Multiple sequence alignment - TraesCS4B01G362900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G362900 chr4B 100.000 2243 0 0 1 2243 651977367 651975125 0.000000e+00 4143
1 TraesCS4B01G362900 chr4B 91.589 107 9 0 2137 2243 591275612 591275506 4.990000e-32 148
2 TraesCS4B01G362900 chr1D 88.316 873 68 15 1383 2243 462966498 462967348 0.000000e+00 1016
3 TraesCS4B01G362900 chr1D 88.843 242 21 5 220 459 486144861 486144624 2.180000e-75 292
4 TraesCS4B01G362900 chr5B 89.975 798 56 18 1384 2170 347395917 347396701 0.000000e+00 1009
5 TraesCS4B01G362900 chr5B 87.001 877 84 22 1378 2243 597104226 597103369 0.000000e+00 961
6 TraesCS4B01G362900 chr5B 84.498 329 43 2 1916 2243 347396326 347396005 3.590000e-83 318
7 TraesCS4B01G362900 chr4D 87.608 928 39 24 523 1385 505308088 505307172 0.000000e+00 1007
8 TraesCS4B01G362900 chrUn 87.673 868 75 21 1386 2242 272237541 272238387 0.000000e+00 981
9 TraesCS4B01G362900 chrUn 78.523 880 146 27 1381 2243 272238480 272237627 2.530000e-149 538
10 TraesCS4B01G362900 chr1B 87.086 875 75 26 1375 2243 683782677 683781835 0.000000e+00 955
11 TraesCS4B01G362900 chr1B 86.499 874 84 23 1375 2243 683778187 683777343 0.000000e+00 929
12 TraesCS4B01G362900 chr1B 86.885 244 30 2 220 461 357188152 357188395 2.840000e-69 272
13 TraesCS4B01G362900 chr3D 86.866 868 82 19 1384 2243 549724767 549723924 0.000000e+00 942
14 TraesCS4B01G362900 chr1A 86.179 861 102 9 1386 2243 284747626 284746780 0.000000e+00 915
15 TraesCS4B01G362900 chr1A 87.029 239 31 0 220 458 574541838 574541600 1.020000e-68 270
16 TraesCS4B01G362900 chr1A 85.441 261 28 10 211 466 12417655 12417910 1.710000e-66 263
17 TraesCS4B01G362900 chr7D 87.280 794 76 19 1462 2243 55384401 55385181 0.000000e+00 883
18 TraesCS4B01G362900 chr7D 87.552 241 28 2 220 459 11263453 11263214 6.100000e-71 278
19 TraesCS4B01G362900 chr7B 88.314 676 59 10 1574 2243 73717088 73716427 0.000000e+00 793
20 TraesCS4B01G362900 chr2B 80.091 879 117 32 1383 2243 669496255 669497093 3.190000e-168 601
21 TraesCS4B01G362900 chr5A 86.616 396 27 15 674 1051 689513043 689512656 4.460000e-112 414
22 TraesCS4B01G362900 chr5A 93.665 221 13 1 1042 1261 689512434 689512214 1.660000e-86 329
23 TraesCS4B01G362900 chr5A 92.857 98 3 1 575 672 689513164 689513071 3.000000e-29 139
24 TraesCS4B01G362900 chr6D 89.451 237 22 3 227 461 298213651 298213886 1.680000e-76 296
25 TraesCS4B01G362900 chr6D 87.083 240 31 0 220 459 464536541 464536780 2.840000e-69 272
26 TraesCS4B01G362900 chr5D 87.395 238 30 0 221 458 460070562 460070799 7.890000e-70 274
27 TraesCS4B01G362900 chr3B 85.772 246 33 2 220 465 498732825 498733068 2.210000e-65 259
28 TraesCS4B01G362900 chr3B 86.093 151 12 2 2093 2243 790750805 790750664 1.070000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G362900 chr4B 651975125 651977367 2242 True 4143 4143 100.0000 1 2243 1 chr4B.!!$R2 2242
1 TraesCS4B01G362900 chr1D 462966498 462967348 850 False 1016 1016 88.3160 1383 2243 1 chr1D.!!$F1 860
2 TraesCS4B01G362900 chr5B 347395917 347396701 784 False 1009 1009 89.9750 1384 2170 1 chr5B.!!$F1 786
3 TraesCS4B01G362900 chr5B 597103369 597104226 857 True 961 961 87.0010 1378 2243 1 chr5B.!!$R2 865
4 TraesCS4B01G362900 chr4D 505307172 505308088 916 True 1007 1007 87.6080 523 1385 1 chr4D.!!$R1 862
5 TraesCS4B01G362900 chrUn 272237541 272238387 846 False 981 981 87.6730 1386 2242 1 chrUn.!!$F1 856
6 TraesCS4B01G362900 chrUn 272237627 272238480 853 True 538 538 78.5230 1381 2243 1 chrUn.!!$R1 862
7 TraesCS4B01G362900 chr1B 683777343 683782677 5334 True 942 955 86.7925 1375 2243 2 chr1B.!!$R1 868
8 TraesCS4B01G362900 chr3D 549723924 549724767 843 True 942 942 86.8660 1384 2243 1 chr3D.!!$R1 859
9 TraesCS4B01G362900 chr1A 284746780 284747626 846 True 915 915 86.1790 1386 2243 1 chr1A.!!$R1 857
10 TraesCS4B01G362900 chr7D 55384401 55385181 780 False 883 883 87.2800 1462 2243 1 chr7D.!!$F1 781
11 TraesCS4B01G362900 chr7B 73716427 73717088 661 True 793 793 88.3140 1574 2243 1 chr7B.!!$R1 669
12 TraesCS4B01G362900 chr2B 669496255 669497093 838 False 601 601 80.0910 1383 2243 1 chr2B.!!$F1 860
13 TraesCS4B01G362900 chr5A 689512214 689513164 950 True 294 414 91.0460 575 1261 3 chr5A.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 499 0.034198 TGCCGATCCTTTGACGTGAA 59.966 50.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1822 0.037046 GGACTAAAACCGCCCGAAGA 60.037 55.0 0.0 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.479070 CTTACGCACTGATTGTACAAAAATC 57.521 36.000 13.23 6.56 35.10 2.17
25 26 5.689383 ACGCACTGATTGTACAAAAATCT 57.311 34.783 13.23 0.00 35.48 2.40
26 27 6.795098 ACGCACTGATTGTACAAAAATCTA 57.205 33.333 13.23 0.00 35.48 1.98
27 28 6.599437 ACGCACTGATTGTACAAAAATCTAC 58.401 36.000 13.23 0.00 35.48 2.59
28 29 5.728049 CGCACTGATTGTACAAAAATCTACG 59.272 40.000 13.23 7.92 35.48 3.51
29 30 5.508224 GCACTGATTGTACAAAAATCTACGC 59.492 40.000 13.23 6.28 35.48 4.42
30 31 6.598525 CACTGATTGTACAAAAATCTACGCA 58.401 36.000 13.23 0.00 35.48 5.24
31 32 6.519761 CACTGATTGTACAAAAATCTACGCAC 59.480 38.462 13.23 0.00 35.48 5.34
32 33 6.426937 ACTGATTGTACAAAAATCTACGCACT 59.573 34.615 13.23 0.00 35.48 4.40
33 34 7.601130 ACTGATTGTACAAAAATCTACGCACTA 59.399 33.333 13.23 0.00 35.48 2.74
34 35 7.959733 TGATTGTACAAAAATCTACGCACTAG 58.040 34.615 13.23 0.00 35.48 2.57
35 36 5.773239 TGTACAAAAATCTACGCACTAGC 57.227 39.130 0.00 0.00 37.42 3.42
36 37 5.475719 TGTACAAAAATCTACGCACTAGCT 58.524 37.500 0.00 0.00 39.10 3.32
37 38 6.623486 TGTACAAAAATCTACGCACTAGCTA 58.377 36.000 0.00 0.00 39.10 3.32
38 39 6.750501 TGTACAAAAATCTACGCACTAGCTAG 59.249 38.462 19.44 19.44 39.10 3.42
39 40 5.721232 ACAAAAATCTACGCACTAGCTAGT 58.279 37.500 20.95 20.95 39.10 2.57
40 41 6.164176 ACAAAAATCTACGCACTAGCTAGTT 58.836 36.000 23.94 12.44 39.10 2.24
41 42 6.310711 ACAAAAATCTACGCACTAGCTAGTTC 59.689 38.462 23.94 18.15 39.10 3.01
42 43 5.578005 AAATCTACGCACTAGCTAGTTCA 57.422 39.130 23.94 3.72 39.10 3.18
43 44 5.578005 AATCTACGCACTAGCTAGTTCAA 57.422 39.130 23.94 9.24 39.10 2.69
44 45 5.578005 ATCTACGCACTAGCTAGTTCAAA 57.422 39.130 23.94 8.89 39.10 2.69
45 46 5.578005 TCTACGCACTAGCTAGTTCAAAT 57.422 39.130 23.94 9.95 39.10 2.32
46 47 5.962433 TCTACGCACTAGCTAGTTCAAATT 58.038 37.500 23.94 7.85 39.10 1.82
47 48 4.928661 ACGCACTAGCTAGTTCAAATTG 57.071 40.909 23.94 11.80 39.10 2.32
48 49 3.125316 ACGCACTAGCTAGTTCAAATTGC 59.875 43.478 23.94 19.48 39.10 3.56
49 50 3.372206 CGCACTAGCTAGTTCAAATTGCT 59.628 43.478 23.94 0.00 39.10 3.91
50 51 4.656041 GCACTAGCTAGTTCAAATTGCTG 58.344 43.478 23.94 9.67 37.91 4.41
51 52 4.437930 GCACTAGCTAGTTCAAATTGCTGG 60.438 45.833 23.94 9.12 38.05 4.85
52 53 3.691609 ACTAGCTAGTTCAAATTGCTGGC 59.308 43.478 20.95 1.85 36.02 4.85
53 54 1.470098 AGCTAGTTCAAATTGCTGGCG 59.530 47.619 0.00 0.00 40.81 5.69
54 55 1.468054 GCTAGTTCAAATTGCTGGCGG 60.468 52.381 0.00 0.00 0.00 6.13
55 56 1.812571 CTAGTTCAAATTGCTGGCGGT 59.187 47.619 0.00 0.00 0.00 5.68
56 57 1.039856 AGTTCAAATTGCTGGCGGTT 58.960 45.000 0.00 0.00 0.00 4.44
57 58 2.235016 AGTTCAAATTGCTGGCGGTTA 58.765 42.857 0.00 0.00 0.00 2.85
58 59 2.825532 AGTTCAAATTGCTGGCGGTTAT 59.174 40.909 0.00 0.00 0.00 1.89
59 60 3.258123 AGTTCAAATTGCTGGCGGTTATT 59.742 39.130 0.00 0.00 0.00 1.40
60 61 3.502191 TCAAATTGCTGGCGGTTATTC 57.498 42.857 0.00 0.00 0.00 1.75
61 62 2.165437 TCAAATTGCTGGCGGTTATTCC 59.835 45.455 0.00 0.00 0.00 3.01
62 63 1.111277 AATTGCTGGCGGTTATTCCC 58.889 50.000 0.00 0.00 0.00 3.97
63 64 0.258774 ATTGCTGGCGGTTATTCCCT 59.741 50.000 0.00 0.00 0.00 4.20
64 65 0.393808 TTGCTGGCGGTTATTCCCTC 60.394 55.000 0.00 0.00 0.00 4.30
65 66 1.526225 GCTGGCGGTTATTCCCTCC 60.526 63.158 0.00 0.00 0.00 4.30
66 67 1.984288 GCTGGCGGTTATTCCCTCCT 61.984 60.000 0.00 0.00 0.00 3.69
67 68 0.546598 CTGGCGGTTATTCCCTCCTT 59.453 55.000 0.00 0.00 0.00 3.36
68 69 0.996583 TGGCGGTTATTCCCTCCTTT 59.003 50.000 0.00 0.00 0.00 3.11
69 70 1.356398 TGGCGGTTATTCCCTCCTTTT 59.644 47.619 0.00 0.00 0.00 2.27
70 71 2.225167 TGGCGGTTATTCCCTCCTTTTT 60.225 45.455 0.00 0.00 0.00 1.94
71 72 2.426024 GGCGGTTATTCCCTCCTTTTTC 59.574 50.000 0.00 0.00 0.00 2.29
72 73 3.353557 GCGGTTATTCCCTCCTTTTTCT 58.646 45.455 0.00 0.00 0.00 2.52
73 74 3.377485 GCGGTTATTCCCTCCTTTTTCTC 59.623 47.826 0.00 0.00 0.00 2.87
74 75 3.945921 CGGTTATTCCCTCCTTTTTCTCC 59.054 47.826 0.00 0.00 0.00 3.71
75 76 4.324331 CGGTTATTCCCTCCTTTTTCTCCT 60.324 45.833 0.00 0.00 0.00 3.69
76 77 4.950475 GGTTATTCCCTCCTTTTTCTCCTG 59.050 45.833 0.00 0.00 0.00 3.86
77 78 5.281037 GGTTATTCCCTCCTTTTTCTCCTGA 60.281 44.000 0.00 0.00 0.00 3.86
78 79 3.790089 TTCCCTCCTTTTTCTCCTGAC 57.210 47.619 0.00 0.00 0.00 3.51
79 80 1.623811 TCCCTCCTTTTTCTCCTGACG 59.376 52.381 0.00 0.00 0.00 4.35
80 81 1.339151 CCCTCCTTTTTCTCCTGACGG 60.339 57.143 0.00 0.00 0.00 4.79
81 82 1.348036 CCTCCTTTTTCTCCTGACGGT 59.652 52.381 0.00 0.00 0.00 4.83
82 83 2.417719 CTCCTTTTTCTCCTGACGGTG 58.582 52.381 0.00 0.00 0.00 4.94
83 84 2.037251 CTCCTTTTTCTCCTGACGGTGA 59.963 50.000 0.00 0.00 0.00 4.02
84 85 2.637872 TCCTTTTTCTCCTGACGGTGAT 59.362 45.455 0.00 0.00 33.16 3.06
85 86 3.072476 TCCTTTTTCTCCTGACGGTGATT 59.928 43.478 0.00 0.00 33.16 2.57
86 87 3.189287 CCTTTTTCTCCTGACGGTGATTG 59.811 47.826 0.00 0.00 33.16 2.67
87 88 3.485463 TTTTCTCCTGACGGTGATTGT 57.515 42.857 0.00 0.00 33.16 2.71
88 89 2.743636 TTCTCCTGACGGTGATTGTC 57.256 50.000 0.00 0.00 33.16 3.18
89 90 1.924731 TCTCCTGACGGTGATTGTCT 58.075 50.000 0.00 0.00 37.26 3.41
90 91 1.819288 TCTCCTGACGGTGATTGTCTC 59.181 52.381 0.00 0.00 37.26 3.36
91 92 1.821753 CTCCTGACGGTGATTGTCTCT 59.178 52.381 0.00 0.00 37.26 3.10
92 93 1.819288 TCCTGACGGTGATTGTCTCTC 59.181 52.381 0.00 0.00 37.26 3.20
93 94 1.821753 CCTGACGGTGATTGTCTCTCT 59.178 52.381 0.00 0.00 37.26 3.10
94 95 2.159310 CCTGACGGTGATTGTCTCTCTC 60.159 54.545 0.00 0.00 37.26 3.20
95 96 2.489722 CTGACGGTGATTGTCTCTCTCA 59.510 50.000 0.00 0.00 37.26 3.27
96 97 2.229062 TGACGGTGATTGTCTCTCTCAC 59.771 50.000 0.00 0.00 38.82 3.51
97 98 2.229062 GACGGTGATTGTCTCTCTCACA 59.771 50.000 4.52 0.00 40.80 3.58
98 99 2.828520 ACGGTGATTGTCTCTCTCACAT 59.171 45.455 4.52 0.00 40.80 3.21
99 100 3.119316 ACGGTGATTGTCTCTCTCACATC 60.119 47.826 4.52 0.00 40.80 3.06
100 101 3.119352 CGGTGATTGTCTCTCTCACATCA 60.119 47.826 4.52 0.00 40.80 3.07
101 102 4.441217 CGGTGATTGTCTCTCTCACATCAT 60.441 45.833 4.52 0.00 40.80 2.45
102 103 4.809958 GGTGATTGTCTCTCTCACATCATG 59.190 45.833 4.52 0.00 40.80 3.07
103 104 5.417811 GTGATTGTCTCTCTCACATCATGT 58.582 41.667 0.00 0.00 39.24 3.21
104 105 6.406288 GGTGATTGTCTCTCTCACATCATGTA 60.406 42.308 0.00 0.00 40.80 2.29
105 106 7.038048 GTGATTGTCTCTCTCACATCATGTAA 58.962 38.462 0.00 0.00 39.24 2.41
106 107 7.222417 GTGATTGTCTCTCTCACATCATGTAAG 59.778 40.741 0.00 0.00 39.24 2.34
107 108 6.596309 TTGTCTCTCTCACATCATGTAAGT 57.404 37.500 0.00 0.00 0.00 2.24
108 109 6.596309 TGTCTCTCTCACATCATGTAAGTT 57.404 37.500 0.00 0.00 0.00 2.66
109 110 6.997655 TGTCTCTCTCACATCATGTAAGTTT 58.002 36.000 0.00 0.00 0.00 2.66
110 111 7.445121 TGTCTCTCTCACATCATGTAAGTTTT 58.555 34.615 0.00 0.00 0.00 2.43
111 112 8.585018 TGTCTCTCTCACATCATGTAAGTTTTA 58.415 33.333 0.00 0.00 0.00 1.52
112 113 8.865001 GTCTCTCTCACATCATGTAAGTTTTAC 58.135 37.037 0.00 0.00 0.00 2.01
113 114 7.755373 TCTCTCTCACATCATGTAAGTTTTACG 59.245 37.037 0.00 0.00 0.00 3.18
114 115 7.375834 TCTCTCACATCATGTAAGTTTTACGT 58.624 34.615 0.00 0.00 0.00 3.57
115 116 8.517056 TCTCTCACATCATGTAAGTTTTACGTA 58.483 33.333 0.00 0.00 0.00 3.57
116 117 8.683550 TCTCACATCATGTAAGTTTTACGTAG 57.316 34.615 0.00 0.00 0.00 3.51
117 118 8.517056 TCTCACATCATGTAAGTTTTACGTAGA 58.483 33.333 0.00 0.00 0.00 2.59
118 119 9.135843 CTCACATCATGTAAGTTTTACGTAGAA 57.864 33.333 0.00 0.00 0.00 2.10
119 120 9.135843 TCACATCATGTAAGTTTTACGTAGAAG 57.864 33.333 0.00 0.00 0.00 2.85
120 121 8.922676 CACATCATGTAAGTTTTACGTAGAAGT 58.077 33.333 0.00 0.00 0.00 3.01
121 122 9.485206 ACATCATGTAAGTTTTACGTAGAAGTT 57.515 29.630 19.28 19.28 0.00 2.66
122 123 9.741168 CATCATGTAAGTTTTACGTAGAAGTTG 57.259 33.333 22.56 11.21 0.00 3.16
123 124 8.301730 TCATGTAAGTTTTACGTAGAAGTTGG 57.698 34.615 22.56 12.70 0.00 3.77
124 125 7.385752 TCATGTAAGTTTTACGTAGAAGTTGGG 59.614 37.037 22.56 12.45 0.00 4.12
125 126 5.466393 TGTAAGTTTTACGTAGAAGTTGGGC 59.534 40.000 22.56 15.01 0.00 5.36
126 127 3.062042 AGTTTTACGTAGAAGTTGGGCG 58.938 45.455 0.00 0.00 0.00 6.13
127 128 2.802247 GTTTTACGTAGAAGTTGGGCGT 59.198 45.455 0.00 0.00 39.23 5.68
128 129 3.932545 TTTACGTAGAAGTTGGGCGTA 57.067 42.857 0.00 0.00 37.05 4.42
129 130 2.919666 TACGTAGAAGTTGGGCGTAC 57.080 50.000 0.00 0.00 37.05 3.67
130 131 0.109597 ACGTAGAAGTTGGGCGTACG 60.110 55.000 11.84 11.84 41.69 3.67
131 132 0.168788 CGTAGAAGTTGGGCGTACGA 59.831 55.000 21.65 0.00 39.00 3.43
132 133 1.792993 CGTAGAAGTTGGGCGTACGAG 60.793 57.143 21.65 0.00 39.00 4.18
133 134 1.200948 GTAGAAGTTGGGCGTACGAGT 59.799 52.381 21.65 0.00 0.00 4.18
134 135 1.538047 AGAAGTTGGGCGTACGAGTA 58.462 50.000 21.65 0.00 0.00 2.59
135 136 1.888512 AGAAGTTGGGCGTACGAGTAA 59.111 47.619 21.65 6.93 0.00 2.24
136 137 1.988467 GAAGTTGGGCGTACGAGTAAC 59.012 52.381 21.65 18.19 0.00 2.50
137 138 0.961019 AGTTGGGCGTACGAGTAACA 59.039 50.000 21.65 6.57 0.00 2.41
138 139 1.547372 AGTTGGGCGTACGAGTAACAT 59.453 47.619 21.65 7.14 0.00 2.71
139 140 2.028748 AGTTGGGCGTACGAGTAACATT 60.029 45.455 21.65 2.61 0.00 2.71
140 141 2.738314 GTTGGGCGTACGAGTAACATTT 59.262 45.455 21.65 0.00 0.00 2.32
141 142 2.339418 TGGGCGTACGAGTAACATTTG 58.661 47.619 21.65 0.00 0.00 2.32
142 143 2.288948 TGGGCGTACGAGTAACATTTGT 60.289 45.455 21.65 0.00 0.00 2.83
143 144 2.093152 GGGCGTACGAGTAACATTTGTG 59.907 50.000 21.65 0.00 0.00 3.33
144 145 2.473376 GGCGTACGAGTAACATTTGTGC 60.473 50.000 21.65 0.00 0.00 4.57
145 146 2.156117 GCGTACGAGTAACATTTGTGCA 59.844 45.455 21.65 0.00 0.00 4.57
146 147 3.181524 GCGTACGAGTAACATTTGTGCAT 60.182 43.478 21.65 0.00 0.00 3.96
147 148 4.322934 CGTACGAGTAACATTTGTGCATG 58.677 43.478 10.44 0.00 0.00 4.06
148 149 4.090786 CGTACGAGTAACATTTGTGCATGA 59.909 41.667 10.44 0.00 0.00 3.07
149 150 4.668576 ACGAGTAACATTTGTGCATGAG 57.331 40.909 0.00 0.00 0.00 2.90
150 151 4.065088 ACGAGTAACATTTGTGCATGAGT 58.935 39.130 0.00 0.00 0.00 3.41
151 152 4.515191 ACGAGTAACATTTGTGCATGAGTT 59.485 37.500 0.00 0.00 0.00 3.01
152 153 5.699001 ACGAGTAACATTTGTGCATGAGTTA 59.301 36.000 0.00 0.00 0.00 2.24
153 154 6.371548 ACGAGTAACATTTGTGCATGAGTTAT 59.628 34.615 0.00 0.00 0.00 1.89
154 155 7.094805 ACGAGTAACATTTGTGCATGAGTTATT 60.095 33.333 0.00 0.00 0.00 1.40
155 156 8.387354 CGAGTAACATTTGTGCATGAGTTATTA 58.613 33.333 0.00 0.00 0.00 0.98
160 161 8.743085 ACATTTGTGCATGAGTTATTATCTCT 57.257 30.769 0.00 0.00 33.59 3.10
161 162 9.182214 ACATTTGTGCATGAGTTATTATCTCTT 57.818 29.630 0.00 0.00 33.59 2.85
178 179 8.690203 TTATCTCTTTATCTCTCTCCTGACTG 57.310 38.462 0.00 0.00 0.00 3.51
179 180 5.445069 TCTCTTTATCTCTCTCCTGACTGG 58.555 45.833 0.00 0.00 37.10 4.00
180 181 3.957497 TCTTTATCTCTCTCCTGACTGGC 59.043 47.826 0.00 0.00 35.26 4.85
181 182 2.373335 TATCTCTCTCCTGACTGGCC 57.627 55.000 0.00 0.00 35.26 5.36
182 183 0.754957 ATCTCTCTCCTGACTGGCCG 60.755 60.000 0.00 0.00 35.26 6.13
183 184 1.379176 CTCTCTCCTGACTGGCCGA 60.379 63.158 0.00 0.00 35.26 5.54
184 185 1.379176 TCTCTCCTGACTGGCCGAG 60.379 63.158 0.00 0.00 35.67 4.63
185 186 2.363018 TCTCCTGACTGGCCGAGG 60.363 66.667 0.00 0.32 35.26 4.63
186 187 3.465403 CTCCTGACTGGCCGAGGG 61.465 72.222 0.00 0.00 35.26 4.30
187 188 4.316823 TCCTGACTGGCCGAGGGT 62.317 66.667 0.00 0.00 35.26 4.34
188 189 4.087892 CCTGACTGGCCGAGGGTG 62.088 72.222 0.00 0.00 0.00 4.61
189 190 4.087892 CTGACTGGCCGAGGGTGG 62.088 72.222 0.00 0.00 0.00 4.61
197 198 3.953775 CCGAGGGTGGCTTGTGGT 61.954 66.667 0.00 0.00 0.00 4.16
198 199 2.669569 CGAGGGTGGCTTGTGGTG 60.670 66.667 0.00 0.00 0.00 4.17
199 200 2.985847 GAGGGTGGCTTGTGGTGC 60.986 66.667 0.00 0.00 0.00 5.01
205 206 3.670377 GGCTTGTGGTGCCCGAAC 61.670 66.667 0.00 0.00 44.32 3.95
206 207 2.904866 GCTTGTGGTGCCCGAACA 60.905 61.111 0.00 0.00 0.00 3.18
207 208 2.485795 GCTTGTGGTGCCCGAACAA 61.486 57.895 0.00 0.00 33.06 2.83
208 209 2.010582 GCTTGTGGTGCCCGAACAAA 62.011 55.000 0.00 0.00 33.67 2.83
209 210 0.457851 CTTGTGGTGCCCGAACAAAA 59.542 50.000 0.00 0.00 33.67 2.44
210 211 1.068434 CTTGTGGTGCCCGAACAAAAT 59.932 47.619 0.00 0.00 33.67 1.82
211 212 1.982660 TGTGGTGCCCGAACAAAATA 58.017 45.000 0.00 0.00 0.00 1.40
212 213 1.609555 TGTGGTGCCCGAACAAAATAC 59.390 47.619 0.00 0.00 0.00 1.89
213 214 1.883926 GTGGTGCCCGAACAAAATACT 59.116 47.619 0.00 0.00 0.00 2.12
214 215 3.075884 GTGGTGCCCGAACAAAATACTA 58.924 45.455 0.00 0.00 0.00 1.82
215 216 3.075884 TGGTGCCCGAACAAAATACTAC 58.924 45.455 0.00 0.00 0.00 2.73
216 217 3.244630 TGGTGCCCGAACAAAATACTACT 60.245 43.478 0.00 0.00 0.00 2.57
217 218 3.373130 GGTGCCCGAACAAAATACTACTC 59.627 47.826 0.00 0.00 0.00 2.59
218 219 3.373130 GTGCCCGAACAAAATACTACTCC 59.627 47.826 0.00 0.00 0.00 3.85
219 220 2.941064 GCCCGAACAAAATACTACTCCC 59.059 50.000 0.00 0.00 0.00 4.30
220 221 3.370209 GCCCGAACAAAATACTACTCCCT 60.370 47.826 0.00 0.00 0.00 4.20
221 222 4.439968 CCCGAACAAAATACTACTCCCTC 58.560 47.826 0.00 0.00 0.00 4.30
222 223 4.439968 CCGAACAAAATACTACTCCCTCC 58.560 47.826 0.00 0.00 0.00 4.30
223 224 4.439968 CGAACAAAATACTACTCCCTCCC 58.560 47.826 0.00 0.00 0.00 4.30
224 225 4.682589 CGAACAAAATACTACTCCCTCCCC 60.683 50.000 0.00 0.00 0.00 4.81
225 226 3.120898 ACAAAATACTACTCCCTCCCCC 58.879 50.000 0.00 0.00 0.00 5.40
243 244 3.157087 CCCCCATTCCACAATATAGTGC 58.843 50.000 0.00 0.00 38.18 4.40
244 245 2.813754 CCCCATTCCACAATATAGTGCG 59.186 50.000 0.00 0.00 38.18 5.34
245 246 2.226437 CCCATTCCACAATATAGTGCGC 59.774 50.000 0.00 0.00 38.18 6.09
246 247 2.226437 CCATTCCACAATATAGTGCGCC 59.774 50.000 4.18 0.00 38.18 6.53
247 248 3.141398 CATTCCACAATATAGTGCGCCT 58.859 45.455 4.18 3.99 38.18 5.52
248 249 2.238942 TCCACAATATAGTGCGCCTG 57.761 50.000 4.18 0.00 38.18 4.85
249 250 0.588252 CCACAATATAGTGCGCCTGC 59.412 55.000 4.18 0.00 38.18 4.85
259 260 2.174349 GCGCCTGCGTTTTCTGAG 59.826 61.111 13.57 0.00 42.09 3.35
260 261 2.317609 GCGCCTGCGTTTTCTGAGA 61.318 57.895 13.57 0.00 42.09 3.27
261 262 1.639298 GCGCCTGCGTTTTCTGAGAT 61.639 55.000 13.57 0.00 42.09 2.75
262 263 0.798776 CGCCTGCGTTTTCTGAGATT 59.201 50.000 2.83 0.00 34.35 2.40
263 264 1.201965 CGCCTGCGTTTTCTGAGATTC 60.202 52.381 2.83 0.00 34.35 2.52
264 265 1.806542 GCCTGCGTTTTCTGAGATTCA 59.193 47.619 0.00 0.00 0.00 2.57
265 266 2.226437 GCCTGCGTTTTCTGAGATTCAA 59.774 45.455 0.00 0.00 0.00 2.69
266 267 3.669023 GCCTGCGTTTTCTGAGATTCAAG 60.669 47.826 0.00 0.00 0.00 3.02
267 268 3.499918 CCTGCGTTTTCTGAGATTCAAGT 59.500 43.478 0.00 0.00 0.00 3.16
268 269 4.023707 CCTGCGTTTTCTGAGATTCAAGTT 60.024 41.667 0.00 0.00 0.00 2.66
269 270 5.499139 TGCGTTTTCTGAGATTCAAGTTT 57.501 34.783 0.00 0.00 0.00 2.66
270 271 5.273170 TGCGTTTTCTGAGATTCAAGTTTG 58.727 37.500 0.00 0.00 0.00 2.93
271 272 5.065859 TGCGTTTTCTGAGATTCAAGTTTGA 59.934 36.000 0.00 0.00 34.92 2.69
272 273 6.145535 GCGTTTTCTGAGATTCAAGTTTGAT 58.854 36.000 0.00 0.00 37.00 2.57
273 274 6.304208 GCGTTTTCTGAGATTCAAGTTTGATC 59.696 38.462 0.00 0.00 37.00 2.92
274 275 6.517714 CGTTTTCTGAGATTCAAGTTTGATCG 59.482 38.462 0.00 0.00 37.00 3.69
275 276 7.355778 GTTTTCTGAGATTCAAGTTTGATCGT 58.644 34.615 0.00 0.00 37.00 3.73
276 277 8.495949 GTTTTCTGAGATTCAAGTTTGATCGTA 58.504 33.333 0.00 0.00 37.00 3.43
277 278 8.601845 TTTCTGAGATTCAAGTTTGATCGTAA 57.398 30.769 0.00 0.00 37.00 3.18
278 279 8.601845 TTCTGAGATTCAAGTTTGATCGTAAA 57.398 30.769 0.00 0.00 37.00 2.01
279 280 8.777865 TCTGAGATTCAAGTTTGATCGTAAAT 57.222 30.769 0.00 0.00 37.00 1.40
280 281 9.219603 TCTGAGATTCAAGTTTGATCGTAAATT 57.780 29.630 0.00 0.00 37.00 1.82
281 282 9.831737 CTGAGATTCAAGTTTGATCGTAAATTT 57.168 29.630 0.00 0.00 37.00 1.82
289 290 9.257865 CAAGTTTGATCGTAAATTTAACTACCG 57.742 33.333 0.00 0.00 0.00 4.02
290 291 8.761575 AGTTTGATCGTAAATTTAACTACCGA 57.238 30.769 9.43 9.43 0.00 4.69
291 292 8.866956 AGTTTGATCGTAAATTTAACTACCGAG 58.133 33.333 11.80 0.00 0.00 4.63
292 293 8.863049 GTTTGATCGTAAATTTAACTACCGAGA 58.137 33.333 11.80 1.82 0.00 4.04
293 294 7.975866 TGATCGTAAATTTAACTACCGAGAC 57.024 36.000 11.80 9.42 0.00 3.36
294 295 6.974622 TGATCGTAAATTTAACTACCGAGACC 59.025 38.462 11.80 6.24 0.00 3.85
295 296 5.331902 TCGTAAATTTAACTACCGAGACCG 58.668 41.667 0.00 0.00 0.00 4.79
296 297 5.123186 TCGTAAATTTAACTACCGAGACCGA 59.877 40.000 0.00 0.00 38.22 4.69
297 298 5.228012 CGTAAATTTAACTACCGAGACCGAC 59.772 44.000 0.00 0.00 38.22 4.79
298 299 5.397142 AAATTTAACTACCGAGACCGACT 57.603 39.130 0.00 0.00 38.22 4.18
299 300 6.515272 AAATTTAACTACCGAGACCGACTA 57.485 37.500 0.00 0.00 38.22 2.59
300 301 6.705863 AATTTAACTACCGAGACCGACTAT 57.294 37.500 0.00 0.00 38.22 2.12
301 302 5.490139 TTTAACTACCGAGACCGACTATG 57.510 43.478 0.00 0.00 38.22 2.23
302 303 1.964552 ACTACCGAGACCGACTATGG 58.035 55.000 0.00 0.00 38.22 2.74
303 304 0.592148 CTACCGAGACCGACTATGGC 59.408 60.000 0.00 0.00 38.22 4.40
304 305 0.182061 TACCGAGACCGACTATGGCT 59.818 55.000 0.00 0.00 38.22 4.75
305 306 1.360551 CCGAGACCGACTATGGCTG 59.639 63.158 0.00 0.00 38.22 4.85
306 307 1.360551 CGAGACCGACTATGGCTGG 59.639 63.158 0.00 0.00 38.22 4.85
307 308 1.101635 CGAGACCGACTATGGCTGGA 61.102 60.000 0.00 0.00 38.22 3.86
308 309 0.671251 GAGACCGACTATGGCTGGAG 59.329 60.000 0.00 0.00 0.00 3.86
309 310 1.068250 GACCGACTATGGCTGGAGC 59.932 63.158 0.00 0.00 41.14 4.70
310 311 1.676678 GACCGACTATGGCTGGAGCA 61.677 60.000 0.20 0.00 44.36 4.26
311 312 1.264749 ACCGACTATGGCTGGAGCAA 61.265 55.000 0.20 0.00 44.36 3.91
312 313 0.107703 CCGACTATGGCTGGAGCAAA 60.108 55.000 0.20 0.00 44.36 3.68
313 314 1.678728 CCGACTATGGCTGGAGCAAAA 60.679 52.381 0.20 0.00 44.36 2.44
314 315 2.083774 CGACTATGGCTGGAGCAAAAA 58.916 47.619 0.20 0.00 44.36 1.94
315 316 2.684881 CGACTATGGCTGGAGCAAAAAT 59.315 45.455 0.20 0.00 44.36 1.82
316 317 3.129287 CGACTATGGCTGGAGCAAAAATT 59.871 43.478 0.20 0.00 44.36 1.82
317 318 4.335315 CGACTATGGCTGGAGCAAAAATTA 59.665 41.667 0.20 0.00 44.36 1.40
318 319 5.009010 CGACTATGGCTGGAGCAAAAATTAT 59.991 40.000 0.20 0.00 44.36 1.28
319 320 6.204688 CGACTATGGCTGGAGCAAAAATTATA 59.795 38.462 0.20 0.00 44.36 0.98
320 321 7.277174 ACTATGGCTGGAGCAAAAATTATAC 57.723 36.000 0.20 0.00 44.36 1.47
321 322 5.535753 ATGGCTGGAGCAAAAATTATACC 57.464 39.130 0.20 0.00 44.36 2.73
322 323 4.348486 TGGCTGGAGCAAAAATTATACCA 58.652 39.130 0.20 0.00 44.36 3.25
323 324 4.961730 TGGCTGGAGCAAAAATTATACCAT 59.038 37.500 0.20 0.00 44.36 3.55
324 325 5.424895 TGGCTGGAGCAAAAATTATACCATT 59.575 36.000 0.20 0.00 44.36 3.16
325 326 5.754890 GGCTGGAGCAAAAATTATACCATTG 59.245 40.000 0.20 0.00 44.36 2.82
326 327 6.406849 GGCTGGAGCAAAAATTATACCATTGA 60.407 38.462 0.20 0.00 44.36 2.57
327 328 7.041107 GCTGGAGCAAAAATTATACCATTGAA 58.959 34.615 0.00 0.00 41.59 2.69
328 329 7.712205 GCTGGAGCAAAAATTATACCATTGAAT 59.288 33.333 0.00 0.00 41.59 2.57
329 330 9.603921 CTGGAGCAAAAATTATACCATTGAATT 57.396 29.630 0.00 0.00 0.00 2.17
330 331 9.598517 TGGAGCAAAAATTATACCATTGAATTC 57.401 29.630 0.00 0.00 0.00 2.17
331 332 8.755018 GGAGCAAAAATTATACCATTGAATTCG 58.245 33.333 0.04 0.00 0.00 3.34
332 333 9.301153 GAGCAAAAATTATACCATTGAATTCGT 57.699 29.630 0.04 0.00 0.00 3.85
345 346 9.051679 ACCATTGAATTCGTATTTTCGATATGA 57.948 29.630 0.04 0.00 39.57 2.15
346 347 9.877137 CCATTGAATTCGTATTTTCGATATGAA 57.123 29.630 0.04 2.52 39.57 2.57
354 355 8.865590 TCGTATTTTCGATATGAATTCAGTGA 57.134 30.769 14.54 6.02 36.22 3.41
355 356 9.476202 TCGTATTTTCGATATGAATTCAGTGAT 57.524 29.630 14.54 7.10 36.22 3.06
370 371 9.468532 GAATTCAGTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
371 372 6.618287 TCAGTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
372 373 5.008613 TCAGTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
373 374 4.278419 AGTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
374 375 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
375 376 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
376 377 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
377 378 2.490993 AATTTTTGCTCCCGCCGCAG 62.491 55.000 0.00 0.00 38.80 5.18
378 379 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
390 391 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
391 392 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
392 393 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
393 394 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
394 395 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
395 396 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
396 397 2.473984 CAGTCGGTCTCGTTGGTTAAAC 59.526 50.000 0.00 0.00 37.69 2.01
397 398 2.363359 AGTCGGTCTCGTTGGTTAAACT 59.637 45.455 0.00 0.00 36.56 2.66
398 399 3.126073 GTCGGTCTCGTTGGTTAAACTT 58.874 45.455 0.00 0.00 36.56 2.66
399 400 4.037923 AGTCGGTCTCGTTGGTTAAACTTA 59.962 41.667 0.00 0.00 36.56 2.24
400 401 4.148871 GTCGGTCTCGTTGGTTAAACTTAC 59.851 45.833 0.00 0.00 36.56 2.34
401 402 3.120121 CGGTCTCGTTGGTTAAACTTACG 59.880 47.826 11.05 11.05 36.56 3.18
402 403 3.429881 GGTCTCGTTGGTTAAACTTACGG 59.570 47.826 15.38 8.80 36.56 4.02
403 404 4.051237 GTCTCGTTGGTTAAACTTACGGT 58.949 43.478 15.38 0.00 36.56 4.83
404 405 4.148871 GTCTCGTTGGTTAAACTTACGGTC 59.851 45.833 15.38 6.17 36.56 4.79
405 406 4.050553 CTCGTTGGTTAAACTTACGGTCA 58.949 43.478 15.38 0.72 36.56 4.02
406 407 4.437239 TCGTTGGTTAAACTTACGGTCAA 58.563 39.130 15.38 0.00 36.56 3.18
407 408 4.872691 TCGTTGGTTAAACTTACGGTCAAA 59.127 37.500 15.38 0.00 36.56 2.69
408 409 4.963352 CGTTGGTTAAACTTACGGTCAAAC 59.037 41.667 9.85 0.00 36.56 2.93
409 410 5.220643 CGTTGGTTAAACTTACGGTCAAACT 60.221 40.000 9.85 0.00 36.56 2.66
410 411 6.554419 GTTGGTTAAACTTACGGTCAAACTT 58.446 36.000 0.00 0.00 35.75 2.66
411 412 6.121613 TGGTTAAACTTACGGTCAAACTTG 57.878 37.500 0.00 0.00 0.00 3.16
412 413 5.066246 TGGTTAAACTTACGGTCAAACTTGG 59.934 40.000 0.00 0.00 0.00 3.61
413 414 5.296531 GGTTAAACTTACGGTCAAACTTGGA 59.703 40.000 0.00 0.00 0.00 3.53
414 415 6.016860 GGTTAAACTTACGGTCAAACTTGGAT 60.017 38.462 0.00 0.00 0.00 3.41
415 416 5.684550 AAACTTACGGTCAAACTTGGATC 57.315 39.130 0.00 0.00 0.00 3.36
416 417 4.618920 ACTTACGGTCAAACTTGGATCT 57.381 40.909 0.00 0.00 0.00 2.75
417 418 4.566987 ACTTACGGTCAAACTTGGATCTC 58.433 43.478 0.00 0.00 0.00 2.75
418 419 2.080286 ACGGTCAAACTTGGATCTCG 57.920 50.000 0.00 0.00 0.00 4.04
419 420 1.616865 ACGGTCAAACTTGGATCTCGA 59.383 47.619 0.00 0.00 0.00 4.04
420 421 1.993370 CGGTCAAACTTGGATCTCGAC 59.007 52.381 0.00 0.00 0.00 4.20
421 422 2.609491 CGGTCAAACTTGGATCTCGACA 60.609 50.000 0.00 0.00 0.00 4.35
422 423 3.399330 GGTCAAACTTGGATCTCGACAA 58.601 45.455 0.00 0.00 0.00 3.18
424 425 3.067106 TCAAACTTGGATCTCGACAAGC 58.933 45.455 12.07 0.00 46.03 4.01
425 426 1.714794 AACTTGGATCTCGACAAGCG 58.285 50.000 12.07 0.00 46.03 4.68
426 427 0.737715 ACTTGGATCTCGACAAGCGC 60.738 55.000 12.07 0.00 46.03 5.92
427 428 1.746727 CTTGGATCTCGACAAGCGCG 61.747 60.000 0.00 0.00 37.82 6.86
428 429 2.956964 GGATCTCGACAAGCGCGG 60.957 66.667 8.83 0.00 40.61 6.46
429 430 2.102357 GATCTCGACAAGCGCGGA 59.898 61.111 8.83 0.00 40.61 5.54
430 431 1.299468 GATCTCGACAAGCGCGGAT 60.299 57.895 8.83 0.00 40.61 4.18
431 432 1.543941 GATCTCGACAAGCGCGGATG 61.544 60.000 8.83 5.46 40.61 3.51
432 433 3.918220 CTCGACAAGCGCGGATGC 61.918 66.667 8.83 0.00 40.61 3.91
433 434 4.733371 TCGACAAGCGCGGATGCA 62.733 61.111 8.83 0.00 42.97 3.96
434 435 4.505217 CGACAAGCGCGGATGCAC 62.505 66.667 8.83 0.65 42.97 4.57
435 436 3.121030 GACAAGCGCGGATGCACT 61.121 61.111 8.83 0.00 42.97 4.40
436 437 1.809619 GACAAGCGCGGATGCACTA 60.810 57.895 8.83 0.00 42.97 2.74
437 438 2.025359 GACAAGCGCGGATGCACTAC 62.025 60.000 8.83 0.00 42.97 2.73
438 439 2.100031 CAAGCGCGGATGCACTACA 61.100 57.895 8.83 0.00 42.97 2.74
439 440 1.153369 AAGCGCGGATGCACTACAT 60.153 52.632 8.83 0.00 43.54 2.29
440 441 0.744414 AAGCGCGGATGCACTACATT 60.744 50.000 8.83 0.00 39.84 2.71
441 442 0.744414 AGCGCGGATGCACTACATTT 60.744 50.000 8.83 0.00 39.84 2.32
442 443 0.098728 GCGCGGATGCACTACATTTT 59.901 50.000 8.83 0.00 39.84 1.82
443 444 1.813896 CGCGGATGCACTACATTTTG 58.186 50.000 0.00 0.00 39.84 2.44
444 445 1.396648 CGCGGATGCACTACATTTTGA 59.603 47.619 0.00 0.00 39.84 2.69
445 446 2.159585 CGCGGATGCACTACATTTTGAA 60.160 45.455 0.00 0.00 39.84 2.69
446 447 3.669290 CGCGGATGCACTACATTTTGAAA 60.669 43.478 0.00 0.00 39.84 2.69
447 448 3.608073 GCGGATGCACTACATTTTGAAAC 59.392 43.478 0.00 0.00 39.84 2.78
448 449 3.845775 CGGATGCACTACATTTTGAAACG 59.154 43.478 0.00 0.00 39.84 3.60
449 450 3.608073 GGATGCACTACATTTTGAAACGC 59.392 43.478 0.00 0.00 39.84 4.84
450 451 3.699779 TGCACTACATTTTGAAACGCA 57.300 38.095 0.00 0.00 0.00 5.24
451 452 3.626977 TGCACTACATTTTGAAACGCAG 58.373 40.909 0.00 0.00 0.00 5.18
452 453 2.979813 GCACTACATTTTGAAACGCAGG 59.020 45.455 0.00 0.00 0.00 4.85
453 454 3.564511 CACTACATTTTGAAACGCAGGG 58.435 45.455 0.00 0.00 0.00 4.45
454 455 3.252215 CACTACATTTTGAAACGCAGGGA 59.748 43.478 0.00 0.00 0.00 4.20
455 456 3.502211 ACTACATTTTGAAACGCAGGGAG 59.498 43.478 0.00 0.00 0.00 4.30
456 457 2.306847 ACATTTTGAAACGCAGGGAGT 58.693 42.857 0.00 0.00 0.00 3.85
457 458 3.482436 ACATTTTGAAACGCAGGGAGTA 58.518 40.909 0.00 0.00 0.00 2.59
458 459 4.079253 ACATTTTGAAACGCAGGGAGTAT 58.921 39.130 0.00 0.00 0.00 2.12
459 460 5.250200 ACATTTTGAAACGCAGGGAGTATA 58.750 37.500 0.00 0.00 0.00 1.47
460 461 5.885912 ACATTTTGAAACGCAGGGAGTATAT 59.114 36.000 0.00 0.00 0.00 0.86
461 462 7.051623 ACATTTTGAAACGCAGGGAGTATATA 58.948 34.615 0.00 0.00 0.00 0.86
462 463 7.226720 ACATTTTGAAACGCAGGGAGTATATAG 59.773 37.037 0.00 0.00 0.00 1.31
463 464 6.474140 TTTGAAACGCAGGGAGTATATAGA 57.526 37.500 0.00 0.00 0.00 1.98
464 465 6.665992 TTGAAACGCAGGGAGTATATAGAT 57.334 37.500 0.00 0.00 0.00 1.98
465 466 6.268825 TGAAACGCAGGGAGTATATAGATC 57.731 41.667 0.00 0.00 0.00 2.75
466 467 6.010850 TGAAACGCAGGGAGTATATAGATCT 58.989 40.000 0.00 0.00 0.00 2.75
467 468 6.493802 TGAAACGCAGGGAGTATATAGATCTT 59.506 38.462 0.00 0.00 0.00 2.40
468 469 6.919775 AACGCAGGGAGTATATAGATCTTT 57.080 37.500 0.00 0.00 0.00 2.52
469 470 6.274157 ACGCAGGGAGTATATAGATCTTTG 57.726 41.667 0.00 0.00 0.00 2.77
470 471 5.775701 ACGCAGGGAGTATATAGATCTTTGT 59.224 40.000 0.00 0.00 0.00 2.83
471 472 6.946583 ACGCAGGGAGTATATAGATCTTTGTA 59.053 38.462 0.00 0.00 0.00 2.41
472 473 7.450634 ACGCAGGGAGTATATAGATCTTTGTAA 59.549 37.037 0.00 0.00 0.00 2.41
473 474 7.755822 CGCAGGGAGTATATAGATCTTTGTAAC 59.244 40.741 0.00 0.00 0.00 2.50
474 475 7.755822 GCAGGGAGTATATAGATCTTTGTAACG 59.244 40.741 0.00 0.00 0.00 3.18
475 476 8.244802 CAGGGAGTATATAGATCTTTGTAACGG 58.755 40.741 0.00 0.00 0.00 4.44
476 477 7.949006 AGGGAGTATATAGATCTTTGTAACGGT 59.051 37.037 0.00 0.00 0.00 4.83
477 478 8.583296 GGGAGTATATAGATCTTTGTAACGGTT 58.417 37.037 0.00 0.00 0.00 4.44
482 483 8.773404 ATATAGATCTTTGTAACGGTTATGCC 57.227 34.615 0.00 0.00 0.00 4.40
494 495 1.597663 GGTTATGCCGATCCTTTGACG 59.402 52.381 0.00 0.00 0.00 4.35
495 496 2.277084 GTTATGCCGATCCTTTGACGT 58.723 47.619 0.00 0.00 0.00 4.34
496 497 1.934589 TATGCCGATCCTTTGACGTG 58.065 50.000 0.00 0.00 0.00 4.49
497 498 0.249120 ATGCCGATCCTTTGACGTGA 59.751 50.000 0.00 0.00 0.00 4.35
498 499 0.034198 TGCCGATCCTTTGACGTGAA 59.966 50.000 0.00 0.00 0.00 3.18
499 500 0.721718 GCCGATCCTTTGACGTGAAG 59.278 55.000 0.00 0.00 0.00 3.02
500 501 1.939838 GCCGATCCTTTGACGTGAAGT 60.940 52.381 0.00 0.00 0.00 3.01
501 502 2.413837 CCGATCCTTTGACGTGAAGTT 58.586 47.619 0.00 0.00 0.00 2.66
502 503 2.157668 CCGATCCTTTGACGTGAAGTTG 59.842 50.000 0.00 0.00 0.00 3.16
503 504 3.057019 CGATCCTTTGACGTGAAGTTGA 58.943 45.455 0.00 0.00 0.00 3.18
504 505 3.493129 CGATCCTTTGACGTGAAGTTGAA 59.507 43.478 0.00 0.00 0.00 2.69
505 506 4.025229 CGATCCTTTGACGTGAAGTTGAAA 60.025 41.667 0.00 0.00 0.00 2.69
506 507 4.609691 TCCTTTGACGTGAAGTTGAAAC 57.390 40.909 0.00 0.00 0.00 2.78
507 508 4.004314 TCCTTTGACGTGAAGTTGAAACA 58.996 39.130 0.00 0.00 0.00 2.83
508 509 4.638421 TCCTTTGACGTGAAGTTGAAACAT 59.362 37.500 0.00 0.00 0.00 2.71
509 510 5.818336 TCCTTTGACGTGAAGTTGAAACATA 59.182 36.000 0.00 0.00 0.00 2.29
510 511 6.316640 TCCTTTGACGTGAAGTTGAAACATAA 59.683 34.615 0.00 0.00 0.00 1.90
511 512 7.012894 TCCTTTGACGTGAAGTTGAAACATAAT 59.987 33.333 0.00 0.00 0.00 1.28
512 513 7.647715 CCTTTGACGTGAAGTTGAAACATAATT 59.352 33.333 0.00 0.00 0.00 1.40
513 514 9.658475 CTTTGACGTGAAGTTGAAACATAATTA 57.342 29.630 0.00 0.00 0.00 1.40
543 544 0.102300 AACACCAAGCAAAAGACGCC 59.898 50.000 0.00 0.00 0.00 5.68
586 587 8.720562 CCAGGTTCAAATTCAAATCCAATTAAC 58.279 33.333 0.00 0.00 0.00 2.01
594 595 3.759618 TCAAATCCAATTAACGGGGACAC 59.240 43.478 0.00 0.00 32.60 3.67
595 596 2.032680 ATCCAATTAACGGGGACACG 57.967 50.000 0.00 0.00 40.31 4.49
596 597 0.674269 TCCAATTAACGGGGACACGC 60.674 55.000 0.00 0.00 37.37 5.34
623 624 2.932614 CGTATCCAGTTCTTGCTTGGAG 59.067 50.000 0.00 0.00 31.64 3.86
665 673 1.228552 TGGCTTGGAGGCTTCAACC 60.229 57.895 3.48 11.57 41.96 3.77
709 743 2.029649 CCACACCATCTTTTGCTCTTGG 60.030 50.000 0.00 0.00 0.00 3.61
710 744 2.886523 CACACCATCTTTTGCTCTTGGA 59.113 45.455 0.00 0.00 0.00 3.53
718 752 4.326826 TCTTTTGCTCTTGGACACTATGG 58.673 43.478 0.00 0.00 0.00 2.74
739 787 0.820226 TCCTTCTGCCATCTCAGTCG 59.180 55.000 0.00 0.00 35.63 4.18
749 797 3.068873 GCCATCTCAGTCGGTAATCTCTT 59.931 47.826 0.00 0.00 0.00 2.85
762 819 3.377253 AATCTCTTGGTCATGCATGGT 57.623 42.857 25.97 0.00 0.00 3.55
779 836 2.153913 GTTGCAAGAGCGACGTGAT 58.846 52.632 0.00 0.00 44.70 3.06
794 851 2.618709 ACGTGATGATCGACATAGCTGA 59.381 45.455 0.00 0.00 39.56 4.26
797 854 5.027099 CGTGATGATCGACATAGCTGATAG 58.973 45.833 0.00 0.00 39.56 2.08
798 855 4.797868 GTGATGATCGACATAGCTGATAGC 59.202 45.833 0.00 0.00 39.48 2.97
1011 1074 3.785859 GCCGAGATGAGGGGTGCA 61.786 66.667 0.00 0.00 0.00 4.57
1179 1473 3.777910 GGGCCGGTGGTGTACGAT 61.778 66.667 1.90 0.00 0.00 3.73
1450 1766 5.866207 AGAAAACGTCCCTCAACTCTAAAT 58.134 37.500 0.00 0.00 0.00 1.40
1452 1768 4.884668 AACGTCCCTCAACTCTAAATCA 57.115 40.909 0.00 0.00 0.00 2.57
1475 1791 4.218852 AGAGAGTTTTCGTCCCTCAACTAG 59.781 45.833 0.00 0.00 29.43 2.57
1499 1815 0.538584 ACCGGATAGTTTTCGTCCCC 59.461 55.000 9.46 0.00 0.00 4.81
1506 1822 3.562232 TTTTCGTCCCCCGTGCCT 61.562 61.111 0.00 0.00 37.94 4.75
1535 1851 2.362736 GGTTTTAGTCCGGGATGAACC 58.637 52.381 0.00 8.77 38.08 3.62
1779 2116 1.432270 GCTCAGGTACGCAAGATGCC 61.432 60.000 0.00 0.00 41.12 4.40
1927 2302 1.402259 ACACCACGAAATTTTGCACGA 59.598 42.857 5.27 0.00 0.00 4.35
1934 2309 4.026968 CACGAAATTTTGCACGAATGTTGT 60.027 37.500 5.27 0.00 0.00 3.32
1957 2332 0.405198 TCCAAGCCTCTTTGATGCCA 59.595 50.000 0.00 0.00 0.00 4.92
2101 6974 1.654137 CGTGTCTTGCGCACCAAAC 60.654 57.895 11.12 3.41 33.61 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.298122 AGATTTTTGTACAATCAGTGCGTAAG 58.702 34.615 9.56 0.00 35.35 2.34
1 2 7.197071 AGATTTTTGTACAATCAGTGCGTAA 57.803 32.000 9.56 0.00 35.35 3.18
4 5 5.728049 CGTAGATTTTTGTACAATCAGTGCG 59.272 40.000 9.56 5.51 35.35 5.34
5 6 5.508224 GCGTAGATTTTTGTACAATCAGTGC 59.492 40.000 9.56 5.86 33.67 4.40
6 7 6.519761 GTGCGTAGATTTTTGTACAATCAGTG 59.480 38.462 9.56 0.00 33.67 3.66
7 8 6.426937 AGTGCGTAGATTTTTGTACAATCAGT 59.573 34.615 9.56 0.00 33.67 3.41
8 9 6.831769 AGTGCGTAGATTTTTGTACAATCAG 58.168 36.000 9.56 2.07 33.67 2.90
9 10 6.795098 AGTGCGTAGATTTTTGTACAATCA 57.205 33.333 9.56 0.00 33.67 2.57
10 11 6.900299 GCTAGTGCGTAGATTTTTGTACAATC 59.100 38.462 9.56 4.31 0.00 2.67
11 12 6.594159 AGCTAGTGCGTAGATTTTTGTACAAT 59.406 34.615 9.56 0.00 45.42 2.71
12 13 5.929992 AGCTAGTGCGTAGATTTTTGTACAA 59.070 36.000 3.59 3.59 45.42 2.41
13 14 5.475719 AGCTAGTGCGTAGATTTTTGTACA 58.524 37.500 0.00 0.00 45.42 2.90
14 15 6.750963 ACTAGCTAGTGCGTAGATTTTTGTAC 59.249 38.462 25.52 0.00 45.42 2.90
15 16 6.860080 ACTAGCTAGTGCGTAGATTTTTGTA 58.140 36.000 25.52 0.00 45.42 2.41
16 17 5.721232 ACTAGCTAGTGCGTAGATTTTTGT 58.279 37.500 25.52 0.00 45.42 2.83
17 18 6.310467 TGAACTAGCTAGTGCGTAGATTTTTG 59.690 38.462 26.70 0.00 45.42 2.44
18 19 6.395629 TGAACTAGCTAGTGCGTAGATTTTT 58.604 36.000 26.70 6.59 45.42 1.94
19 20 5.962433 TGAACTAGCTAGTGCGTAGATTTT 58.038 37.500 26.70 7.13 45.42 1.82
20 21 5.578005 TGAACTAGCTAGTGCGTAGATTT 57.422 39.130 26.70 7.89 45.42 2.17
21 22 5.578005 TTGAACTAGCTAGTGCGTAGATT 57.422 39.130 26.70 8.65 45.42 2.40
22 23 5.578005 TTTGAACTAGCTAGTGCGTAGAT 57.422 39.130 26.70 9.43 45.42 1.98
23 24 5.578005 ATTTGAACTAGCTAGTGCGTAGA 57.422 39.130 26.70 12.09 45.42 2.59
24 25 5.500931 GCAATTTGAACTAGCTAGTGCGTAG 60.501 44.000 26.70 14.46 45.42 3.51
25 26 4.328983 GCAATTTGAACTAGCTAGTGCGTA 59.671 41.667 26.70 16.37 45.42 4.42
26 27 3.125316 GCAATTTGAACTAGCTAGTGCGT 59.875 43.478 26.70 11.76 45.42 5.24
27 28 3.372206 AGCAATTTGAACTAGCTAGTGCG 59.628 43.478 26.70 12.59 45.42 5.34
28 29 4.437930 CCAGCAATTTGAACTAGCTAGTGC 60.438 45.833 26.70 24.91 36.50 4.40
29 30 4.437930 GCCAGCAATTTGAACTAGCTAGTG 60.438 45.833 26.70 13.28 36.50 2.74
30 31 3.691609 GCCAGCAATTTGAACTAGCTAGT 59.308 43.478 20.95 20.95 38.39 2.57
31 32 3.242543 CGCCAGCAATTTGAACTAGCTAG 60.243 47.826 19.44 19.44 33.59 3.42
32 33 2.677836 CGCCAGCAATTTGAACTAGCTA 59.322 45.455 0.00 0.00 33.59 3.32
33 34 1.470098 CGCCAGCAATTTGAACTAGCT 59.530 47.619 0.00 0.00 35.63 3.32
34 35 1.468054 CCGCCAGCAATTTGAACTAGC 60.468 52.381 0.00 0.00 0.00 3.42
35 36 1.812571 ACCGCCAGCAATTTGAACTAG 59.187 47.619 0.00 0.00 0.00 2.57
36 37 1.904287 ACCGCCAGCAATTTGAACTA 58.096 45.000 0.00 0.00 0.00 2.24
37 38 1.039856 AACCGCCAGCAATTTGAACT 58.960 45.000 0.00 0.00 0.00 3.01
38 39 2.715737 TAACCGCCAGCAATTTGAAC 57.284 45.000 0.00 0.00 0.00 3.18
39 40 3.367910 GGAATAACCGCCAGCAATTTGAA 60.368 43.478 0.00 0.00 0.00 2.69
40 41 2.165437 GGAATAACCGCCAGCAATTTGA 59.835 45.455 0.00 0.00 0.00 2.69
41 42 2.539476 GGAATAACCGCCAGCAATTTG 58.461 47.619 0.00 0.00 0.00 2.32
42 43 1.480545 GGGAATAACCGCCAGCAATTT 59.519 47.619 0.00 0.00 40.11 1.82
43 44 1.111277 GGGAATAACCGCCAGCAATT 58.889 50.000 0.00 0.00 40.11 2.32
44 45 0.258774 AGGGAATAACCGCCAGCAAT 59.741 50.000 0.00 0.00 40.11 3.56
45 46 0.393808 GAGGGAATAACCGCCAGCAA 60.394 55.000 0.00 0.00 40.11 3.91
46 47 1.223487 GAGGGAATAACCGCCAGCA 59.777 57.895 0.00 0.00 40.11 4.41
47 48 4.142780 GAGGGAATAACCGCCAGC 57.857 61.111 0.00 0.00 40.11 4.85
51 52 3.353557 AGAAAAAGGAGGGAATAACCGC 58.646 45.455 0.00 0.00 40.11 5.68
52 53 3.945921 GGAGAAAAAGGAGGGAATAACCG 59.054 47.826 0.00 0.00 40.11 4.44
53 54 4.950475 CAGGAGAAAAAGGAGGGAATAACC 59.050 45.833 0.00 0.00 38.08 2.85
54 55 5.648526 GTCAGGAGAAAAAGGAGGGAATAAC 59.351 44.000 0.00 0.00 0.00 1.89
55 56 5.570844 CGTCAGGAGAAAAAGGAGGGAATAA 60.571 44.000 0.00 0.00 0.00 1.40
56 57 4.081087 CGTCAGGAGAAAAAGGAGGGAATA 60.081 45.833 0.00 0.00 0.00 1.75
57 58 3.307762 CGTCAGGAGAAAAAGGAGGGAAT 60.308 47.826 0.00 0.00 0.00 3.01
58 59 2.038557 CGTCAGGAGAAAAAGGAGGGAA 59.961 50.000 0.00 0.00 0.00 3.97
59 60 1.623811 CGTCAGGAGAAAAAGGAGGGA 59.376 52.381 0.00 0.00 0.00 4.20
60 61 1.339151 CCGTCAGGAGAAAAAGGAGGG 60.339 57.143 0.00 0.00 41.02 4.30
61 62 1.348036 ACCGTCAGGAGAAAAAGGAGG 59.652 52.381 0.00 0.00 41.02 4.30
62 63 2.037251 TCACCGTCAGGAGAAAAAGGAG 59.963 50.000 0.00 0.00 41.02 3.69
63 64 2.043992 TCACCGTCAGGAGAAAAAGGA 58.956 47.619 0.00 0.00 41.02 3.36
64 65 2.543777 TCACCGTCAGGAGAAAAAGG 57.456 50.000 0.00 0.00 41.02 3.11
65 66 3.815401 ACAATCACCGTCAGGAGAAAAAG 59.185 43.478 0.00 0.00 40.45 2.27
66 67 3.813166 GACAATCACCGTCAGGAGAAAAA 59.187 43.478 0.00 0.00 40.45 1.94
67 68 3.071023 AGACAATCACCGTCAGGAGAAAA 59.929 43.478 0.00 0.00 40.45 2.29
68 69 2.632996 AGACAATCACCGTCAGGAGAAA 59.367 45.455 0.00 0.00 40.45 2.52
69 70 2.231478 GAGACAATCACCGTCAGGAGAA 59.769 50.000 0.00 0.00 40.45 2.87
70 71 1.819288 GAGACAATCACCGTCAGGAGA 59.181 52.381 0.00 0.00 41.30 3.71
71 72 1.821753 AGAGACAATCACCGTCAGGAG 59.178 52.381 0.00 0.00 41.02 3.69
72 73 1.819288 GAGAGACAATCACCGTCAGGA 59.181 52.381 0.00 0.00 41.02 3.86
73 74 1.821753 AGAGAGACAATCACCGTCAGG 59.178 52.381 0.00 0.00 45.13 3.86
74 75 2.489722 TGAGAGAGACAATCACCGTCAG 59.510 50.000 0.00 0.00 35.77 3.51
75 76 2.229062 GTGAGAGAGACAATCACCGTCA 59.771 50.000 0.00 0.00 37.88 4.35
76 77 2.229062 TGTGAGAGAGACAATCACCGTC 59.771 50.000 2.42 0.00 42.11 4.79
77 78 2.239400 TGTGAGAGAGACAATCACCGT 58.761 47.619 2.42 0.00 42.11 4.83
78 79 3.119352 TGATGTGAGAGAGACAATCACCG 60.119 47.826 2.42 0.00 42.11 4.94
79 80 4.462508 TGATGTGAGAGAGACAATCACC 57.537 45.455 2.42 0.00 42.11 4.02
80 81 5.417811 ACATGATGTGAGAGAGACAATCAC 58.582 41.667 0.00 0.00 42.90 3.06
81 82 5.672421 ACATGATGTGAGAGAGACAATCA 57.328 39.130 0.00 0.00 0.00 2.57
82 83 7.264221 ACTTACATGATGTGAGAGAGACAATC 58.736 38.462 22.07 0.00 36.22 2.67
83 84 7.180322 ACTTACATGATGTGAGAGAGACAAT 57.820 36.000 22.07 0.00 36.22 2.71
84 85 6.596309 ACTTACATGATGTGAGAGAGACAA 57.404 37.500 22.07 0.00 36.22 3.18
85 86 6.596309 AACTTACATGATGTGAGAGAGACA 57.404 37.500 22.07 0.00 36.22 3.41
86 87 7.897575 AAAACTTACATGATGTGAGAGAGAC 57.102 36.000 22.07 0.00 36.22 3.36
87 88 7.755373 CGTAAAACTTACATGATGTGAGAGAGA 59.245 37.037 22.07 4.07 36.22 3.10
88 89 7.542477 ACGTAAAACTTACATGATGTGAGAGAG 59.458 37.037 22.07 10.11 36.22 3.20
89 90 7.375834 ACGTAAAACTTACATGATGTGAGAGA 58.624 34.615 22.07 3.44 36.22 3.10
90 91 7.582435 ACGTAAAACTTACATGATGTGAGAG 57.418 36.000 22.07 12.64 36.22 3.20
91 92 8.517056 TCTACGTAAAACTTACATGATGTGAGA 58.483 33.333 22.07 0.00 36.22 3.27
92 93 8.683550 TCTACGTAAAACTTACATGATGTGAG 57.316 34.615 14.86 14.86 39.55 3.51
93 94 9.135843 CTTCTACGTAAAACTTACATGATGTGA 57.864 33.333 8.61 0.00 0.00 3.58
94 95 8.922676 ACTTCTACGTAAAACTTACATGATGTG 58.077 33.333 8.61 0.00 0.00 3.21
95 96 9.485206 AACTTCTACGTAAAACTTACATGATGT 57.515 29.630 2.65 2.65 0.00 3.06
96 97 9.741168 CAACTTCTACGTAAAACTTACATGATG 57.259 33.333 0.00 0.00 0.00 3.07
97 98 8.932791 CCAACTTCTACGTAAAACTTACATGAT 58.067 33.333 0.00 0.00 0.00 2.45
98 99 7.385752 CCCAACTTCTACGTAAAACTTACATGA 59.614 37.037 0.00 0.00 0.00 3.07
99 100 7.515643 CCCAACTTCTACGTAAAACTTACATG 58.484 38.462 0.00 0.00 0.00 3.21
100 101 6.148315 GCCCAACTTCTACGTAAAACTTACAT 59.852 38.462 0.00 0.00 0.00 2.29
101 102 5.466393 GCCCAACTTCTACGTAAAACTTACA 59.534 40.000 0.00 0.00 0.00 2.41
102 103 5.388786 CGCCCAACTTCTACGTAAAACTTAC 60.389 44.000 0.00 0.00 0.00 2.34
103 104 4.685628 CGCCCAACTTCTACGTAAAACTTA 59.314 41.667 0.00 0.00 0.00 2.24
104 105 3.495753 CGCCCAACTTCTACGTAAAACTT 59.504 43.478 0.00 0.00 0.00 2.66
105 106 3.062042 CGCCCAACTTCTACGTAAAACT 58.938 45.455 0.00 0.00 0.00 2.66
106 107 2.802247 ACGCCCAACTTCTACGTAAAAC 59.198 45.455 0.00 0.00 34.79 2.43
107 108 3.110447 ACGCCCAACTTCTACGTAAAA 57.890 42.857 0.00 0.00 34.79 1.52
108 109 2.818130 ACGCCCAACTTCTACGTAAA 57.182 45.000 0.00 0.00 34.79 2.01
109 110 2.414029 CGTACGCCCAACTTCTACGTAA 60.414 50.000 0.52 0.00 40.47 3.18
110 111 1.130373 CGTACGCCCAACTTCTACGTA 59.870 52.381 0.52 0.00 38.12 3.57
111 112 0.109597 CGTACGCCCAACTTCTACGT 60.110 55.000 0.52 0.00 40.53 3.57
112 113 0.168788 TCGTACGCCCAACTTCTACG 59.831 55.000 11.24 0.00 33.15 3.51
113 114 1.200948 ACTCGTACGCCCAACTTCTAC 59.799 52.381 11.24 0.00 0.00 2.59
114 115 1.538047 ACTCGTACGCCCAACTTCTA 58.462 50.000 11.24 0.00 0.00 2.10
115 116 1.538047 TACTCGTACGCCCAACTTCT 58.462 50.000 11.24 0.00 0.00 2.85
116 117 1.988467 GTTACTCGTACGCCCAACTTC 59.012 52.381 11.24 0.00 0.00 3.01
117 118 1.340889 TGTTACTCGTACGCCCAACTT 59.659 47.619 11.24 0.00 0.00 2.66
118 119 0.961019 TGTTACTCGTACGCCCAACT 59.039 50.000 11.24 0.00 0.00 3.16
119 120 2.000429 ATGTTACTCGTACGCCCAAC 58.000 50.000 11.24 13.49 0.00 3.77
120 121 2.737783 CAAATGTTACTCGTACGCCCAA 59.262 45.455 11.24 0.61 0.00 4.12
121 122 2.288948 ACAAATGTTACTCGTACGCCCA 60.289 45.455 11.24 2.62 0.00 5.36
122 123 2.093152 CACAAATGTTACTCGTACGCCC 59.907 50.000 11.24 0.00 0.00 6.13
123 124 2.473376 GCACAAATGTTACTCGTACGCC 60.473 50.000 11.24 0.00 0.00 5.68
124 125 2.156117 TGCACAAATGTTACTCGTACGC 59.844 45.455 11.24 0.00 0.00 4.42
125 126 4.090786 TCATGCACAAATGTTACTCGTACG 59.909 41.667 9.53 9.53 0.00 3.67
126 127 5.120208 ACTCATGCACAAATGTTACTCGTAC 59.880 40.000 0.00 0.00 0.00 3.67
127 128 5.234752 ACTCATGCACAAATGTTACTCGTA 58.765 37.500 0.00 0.00 0.00 3.43
128 129 4.065088 ACTCATGCACAAATGTTACTCGT 58.935 39.130 0.00 0.00 0.00 4.18
129 130 4.668576 ACTCATGCACAAATGTTACTCG 57.331 40.909 0.00 0.00 0.00 4.18
134 135 9.182214 AGAGATAATAACTCATGCACAAATGTT 57.818 29.630 0.00 0.00 36.91 2.71
135 136 8.743085 AGAGATAATAACTCATGCACAAATGT 57.257 30.769 0.00 0.00 36.91 2.71
152 153 9.300681 CAGTCAGGAGAGAGATAAAGAGATAAT 57.699 37.037 0.00 0.00 0.00 1.28
153 154 7.723616 CCAGTCAGGAGAGAGATAAAGAGATAA 59.276 40.741 0.00 0.00 41.22 1.75
154 155 7.230747 CCAGTCAGGAGAGAGATAAAGAGATA 58.769 42.308 0.00 0.00 41.22 1.98
155 156 6.070656 CCAGTCAGGAGAGAGATAAAGAGAT 58.929 44.000 0.00 0.00 41.22 2.75
156 157 5.445069 CCAGTCAGGAGAGAGATAAAGAGA 58.555 45.833 0.00 0.00 41.22 3.10
157 158 4.037923 GCCAGTCAGGAGAGAGATAAAGAG 59.962 50.000 0.00 0.00 41.22 2.85
158 159 3.957497 GCCAGTCAGGAGAGAGATAAAGA 59.043 47.826 0.00 0.00 41.22 2.52
159 160 3.069443 GGCCAGTCAGGAGAGAGATAAAG 59.931 52.174 0.00 0.00 41.22 1.85
160 161 3.034635 GGCCAGTCAGGAGAGAGATAAA 58.965 50.000 0.00 0.00 41.22 1.40
161 162 2.672098 GGCCAGTCAGGAGAGAGATAA 58.328 52.381 0.00 0.00 41.22 1.75
162 163 1.477740 CGGCCAGTCAGGAGAGAGATA 60.478 57.143 2.24 0.00 41.22 1.98
163 164 0.754957 CGGCCAGTCAGGAGAGAGAT 60.755 60.000 2.24 0.00 41.22 2.75
164 165 1.379176 CGGCCAGTCAGGAGAGAGA 60.379 63.158 2.24 0.00 41.22 3.10
165 166 1.379176 TCGGCCAGTCAGGAGAGAG 60.379 63.158 2.24 0.00 41.22 3.20
166 167 1.379176 CTCGGCCAGTCAGGAGAGA 60.379 63.158 2.24 0.00 42.65 3.10
167 168 2.422231 CCTCGGCCAGTCAGGAGAG 61.422 68.421 2.24 0.00 41.22 3.20
168 169 2.363018 CCTCGGCCAGTCAGGAGA 60.363 66.667 2.24 0.00 41.22 3.71
169 170 3.465403 CCCTCGGCCAGTCAGGAG 61.465 72.222 2.24 0.00 41.22 3.69
170 171 4.316823 ACCCTCGGCCAGTCAGGA 62.317 66.667 2.24 0.00 41.22 3.86
171 172 4.087892 CACCCTCGGCCAGTCAGG 62.088 72.222 2.24 1.34 41.84 3.86
172 173 4.087892 CCACCCTCGGCCAGTCAG 62.088 72.222 2.24 0.00 0.00 3.51
180 181 3.953775 ACCACAAGCCACCCTCGG 61.954 66.667 0.00 0.00 0.00 4.63
181 182 2.669569 CACCACAAGCCACCCTCG 60.670 66.667 0.00 0.00 0.00 4.63
182 183 2.985847 GCACCACAAGCCACCCTC 60.986 66.667 0.00 0.00 0.00 4.30
196 197 3.373130 GGAGTAGTATTTTGTTCGGGCAC 59.627 47.826 0.00 0.00 0.00 5.01
197 198 3.602483 GGAGTAGTATTTTGTTCGGGCA 58.398 45.455 0.00 0.00 0.00 5.36
198 199 2.941064 GGGAGTAGTATTTTGTTCGGGC 59.059 50.000 0.00 0.00 0.00 6.13
199 200 4.439968 GAGGGAGTAGTATTTTGTTCGGG 58.560 47.826 0.00 0.00 0.00 5.14
200 201 4.439968 GGAGGGAGTAGTATTTTGTTCGG 58.560 47.826 0.00 0.00 0.00 4.30
201 202 4.439968 GGGAGGGAGTAGTATTTTGTTCG 58.560 47.826 0.00 0.00 0.00 3.95
202 203 4.384978 GGGGGAGGGAGTAGTATTTTGTTC 60.385 50.000 0.00 0.00 0.00 3.18
203 204 3.526430 GGGGGAGGGAGTAGTATTTTGTT 59.474 47.826 0.00 0.00 0.00 2.83
204 205 3.120898 GGGGGAGGGAGTAGTATTTTGT 58.879 50.000 0.00 0.00 0.00 2.83
205 206 3.859061 GGGGGAGGGAGTAGTATTTTG 57.141 52.381 0.00 0.00 0.00 2.44
222 223 3.157087 GCACTATATTGTGGAATGGGGG 58.843 50.000 17.22 0.00 38.31 5.40
223 224 2.813754 CGCACTATATTGTGGAATGGGG 59.186 50.000 17.22 0.00 38.31 4.96
224 225 2.226437 GCGCACTATATTGTGGAATGGG 59.774 50.000 17.22 2.75 38.31 4.00
225 226 2.226437 GGCGCACTATATTGTGGAATGG 59.774 50.000 17.22 0.00 38.31 3.16
226 227 3.058708 CAGGCGCACTATATTGTGGAATG 60.059 47.826 17.22 7.45 38.31 2.67
227 228 3.141398 CAGGCGCACTATATTGTGGAAT 58.859 45.455 17.22 0.46 38.31 3.01
228 229 2.560504 CAGGCGCACTATATTGTGGAA 58.439 47.619 17.22 0.00 38.31 3.53
229 230 1.810031 GCAGGCGCACTATATTGTGGA 60.810 52.381 17.22 0.00 38.31 4.02
230 231 0.588252 GCAGGCGCACTATATTGTGG 59.412 55.000 17.22 9.54 38.31 4.17
231 232 0.233074 CGCAGGCGCACTATATTGTG 59.767 55.000 10.83 12.29 40.62 3.33
232 233 0.179084 ACGCAGGCGCACTATATTGT 60.179 50.000 14.32 0.00 44.19 2.71
233 234 0.937304 AACGCAGGCGCACTATATTG 59.063 50.000 14.32 0.00 44.19 1.90
234 235 1.663695 AAACGCAGGCGCACTATATT 58.336 45.000 14.32 0.00 44.19 1.28
235 236 1.597663 GAAAACGCAGGCGCACTATAT 59.402 47.619 14.32 0.00 44.19 0.86
236 237 1.003851 GAAAACGCAGGCGCACTATA 58.996 50.000 14.32 0.00 44.19 1.31
237 238 0.673644 AGAAAACGCAGGCGCACTAT 60.674 50.000 14.32 0.00 44.19 2.12
238 239 1.301401 AGAAAACGCAGGCGCACTA 60.301 52.632 14.32 0.00 44.19 2.74
239 240 2.591715 AGAAAACGCAGGCGCACT 60.592 55.556 14.32 0.02 44.19 4.40
240 241 2.427410 CAGAAAACGCAGGCGCAC 60.427 61.111 14.32 0.00 44.19 5.34
241 242 2.590291 TCAGAAAACGCAGGCGCA 60.590 55.556 14.32 0.00 44.19 6.09
242 243 1.639298 ATCTCAGAAAACGCAGGCGC 61.639 55.000 14.32 0.00 44.19 6.53
243 244 0.798776 AATCTCAGAAAACGCAGGCG 59.201 50.000 12.71 12.71 46.03 5.52
244 245 1.806542 TGAATCTCAGAAAACGCAGGC 59.193 47.619 0.00 0.00 0.00 4.85
245 246 3.499918 ACTTGAATCTCAGAAAACGCAGG 59.500 43.478 0.00 0.00 0.00 4.85
246 247 4.739046 ACTTGAATCTCAGAAAACGCAG 57.261 40.909 0.00 0.00 0.00 5.18
247 248 5.065859 TCAAACTTGAATCTCAGAAAACGCA 59.934 36.000 0.00 0.00 33.55 5.24
248 249 5.510671 TCAAACTTGAATCTCAGAAAACGC 58.489 37.500 0.00 0.00 33.55 4.84
249 250 6.517714 CGATCAAACTTGAATCTCAGAAAACG 59.482 38.462 0.00 0.00 41.13 3.60
250 251 7.355778 ACGATCAAACTTGAATCTCAGAAAAC 58.644 34.615 0.00 0.00 41.13 2.43
251 252 7.496529 ACGATCAAACTTGAATCTCAGAAAA 57.503 32.000 0.00 0.00 41.13 2.29
252 253 8.601845 TTACGATCAAACTTGAATCTCAGAAA 57.398 30.769 0.00 0.00 41.13 2.52
253 254 8.601845 TTTACGATCAAACTTGAATCTCAGAA 57.398 30.769 0.00 0.00 41.13 3.02
254 255 8.777865 ATTTACGATCAAACTTGAATCTCAGA 57.222 30.769 0.00 0.00 41.13 3.27
255 256 9.831737 AAATTTACGATCAAACTTGAATCTCAG 57.168 29.630 0.00 0.00 41.13 3.35
263 264 9.257865 CGGTAGTTAAATTTACGATCAAACTTG 57.742 33.333 0.00 0.00 0.00 3.16
264 265 9.206870 TCGGTAGTTAAATTTACGATCAAACTT 57.793 29.630 0.00 0.00 0.00 2.66
265 266 8.761575 TCGGTAGTTAAATTTACGATCAAACT 57.238 30.769 0.00 1.75 0.00 2.66
266 267 8.863049 TCTCGGTAGTTAAATTTACGATCAAAC 58.137 33.333 7.92 0.30 0.00 2.93
267 268 8.863049 GTCTCGGTAGTTAAATTTACGATCAAA 58.137 33.333 7.92 0.00 0.00 2.69
268 269 7.489113 GGTCTCGGTAGTTAAATTTACGATCAA 59.511 37.037 7.92 0.00 0.00 2.57
269 270 6.974622 GGTCTCGGTAGTTAAATTTACGATCA 59.025 38.462 7.92 0.00 0.00 2.92
270 271 6.141369 CGGTCTCGGTAGTTAAATTTACGATC 59.859 42.308 7.92 5.64 0.00 3.69
271 272 5.973565 CGGTCTCGGTAGTTAAATTTACGAT 59.026 40.000 7.92 0.00 0.00 3.73
272 273 5.123186 TCGGTCTCGGTAGTTAAATTTACGA 59.877 40.000 0.00 2.84 36.95 3.43
273 274 5.228012 GTCGGTCTCGGTAGTTAAATTTACG 59.772 44.000 0.00 0.00 36.95 3.18
274 275 6.325596 AGTCGGTCTCGGTAGTTAAATTTAC 58.674 40.000 0.00 0.00 36.95 2.01
275 276 6.515272 AGTCGGTCTCGGTAGTTAAATTTA 57.485 37.500 0.00 0.00 36.95 1.40
276 277 5.397142 AGTCGGTCTCGGTAGTTAAATTT 57.603 39.130 0.00 0.00 36.95 1.82
277 278 6.460676 CCATAGTCGGTCTCGGTAGTTAAATT 60.461 42.308 0.00 0.00 36.95 1.82
278 279 5.009410 CCATAGTCGGTCTCGGTAGTTAAAT 59.991 44.000 0.00 0.00 36.95 1.40
279 280 4.336433 CCATAGTCGGTCTCGGTAGTTAAA 59.664 45.833 0.00 0.00 36.95 1.52
280 281 3.879295 CCATAGTCGGTCTCGGTAGTTAA 59.121 47.826 0.00 0.00 36.95 2.01
281 282 3.470709 CCATAGTCGGTCTCGGTAGTTA 58.529 50.000 0.00 0.00 36.95 2.24
282 283 2.295885 CCATAGTCGGTCTCGGTAGTT 58.704 52.381 0.00 0.00 36.95 2.24
283 284 1.964552 CCATAGTCGGTCTCGGTAGT 58.035 55.000 0.00 0.00 36.95 2.73
284 285 0.592148 GCCATAGTCGGTCTCGGTAG 59.408 60.000 0.00 0.00 36.95 3.18
285 286 0.182061 AGCCATAGTCGGTCTCGGTA 59.818 55.000 0.00 0.00 36.95 4.02
286 287 1.076923 AGCCATAGTCGGTCTCGGT 60.077 57.895 0.00 0.00 36.95 4.69
287 288 1.360551 CAGCCATAGTCGGTCTCGG 59.639 63.158 0.00 0.00 36.95 4.63
288 289 1.101635 TCCAGCCATAGTCGGTCTCG 61.102 60.000 0.00 0.00 37.82 4.04
289 290 0.671251 CTCCAGCCATAGTCGGTCTC 59.329 60.000 0.00 0.00 0.00 3.36
290 291 1.395826 GCTCCAGCCATAGTCGGTCT 61.396 60.000 0.00 0.00 34.31 3.85
291 292 1.068250 GCTCCAGCCATAGTCGGTC 59.932 63.158 0.00 0.00 34.31 4.79
292 293 1.264749 TTGCTCCAGCCATAGTCGGT 61.265 55.000 0.00 0.00 41.18 4.69
293 294 0.107703 TTTGCTCCAGCCATAGTCGG 60.108 55.000 0.00 0.00 41.18 4.79
294 295 1.737838 TTTTGCTCCAGCCATAGTCG 58.262 50.000 0.00 0.00 41.18 4.18
295 296 4.725790 AATTTTTGCTCCAGCCATAGTC 57.274 40.909 0.00 0.00 41.18 2.59
296 297 6.265422 GGTATAATTTTTGCTCCAGCCATAGT 59.735 38.462 0.00 0.00 41.18 2.12
297 298 6.265196 TGGTATAATTTTTGCTCCAGCCATAG 59.735 38.462 0.00 0.00 41.18 2.23
298 299 6.132658 TGGTATAATTTTTGCTCCAGCCATA 58.867 36.000 0.00 0.00 41.18 2.74
299 300 4.961730 TGGTATAATTTTTGCTCCAGCCAT 59.038 37.500 0.00 0.00 41.18 4.40
300 301 4.348486 TGGTATAATTTTTGCTCCAGCCA 58.652 39.130 0.00 0.00 41.18 4.75
301 302 5.535753 ATGGTATAATTTTTGCTCCAGCC 57.464 39.130 0.00 0.00 41.18 4.85
302 303 6.572519 TCAATGGTATAATTTTTGCTCCAGC 58.427 36.000 0.00 0.00 42.50 4.85
303 304 9.603921 AATTCAATGGTATAATTTTTGCTCCAG 57.396 29.630 0.00 0.00 0.00 3.86
304 305 9.598517 GAATTCAATGGTATAATTTTTGCTCCA 57.401 29.630 0.00 0.00 0.00 3.86
305 306 8.755018 CGAATTCAATGGTATAATTTTTGCTCC 58.245 33.333 6.22 0.00 0.00 4.70
306 307 9.301153 ACGAATTCAATGGTATAATTTTTGCTC 57.699 29.630 6.22 0.00 0.00 4.26
319 320 9.051679 TCATATCGAAAATACGAATTCAATGGT 57.948 29.630 6.22 0.00 45.16 3.55
320 321 9.877137 TTCATATCGAAAATACGAATTCAATGG 57.123 29.630 6.22 0.00 45.16 3.16
328 329 9.308318 TCACTGAATTCATATCGAAAATACGAA 57.692 29.630 8.96 0.00 45.16 3.85
329 330 8.865590 TCACTGAATTCATATCGAAAATACGA 57.134 30.769 8.96 0.00 46.04 3.43
344 345 9.468532 GGGAGCAAAAATTATATCACTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
345 346 8.137437 CGGGAGCAAAAATTATATCACTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
346 347 7.651808 CGGGAGCAAAAATTATATCACTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
347 348 7.026631 CGGGAGCAAAAATTATATCACTGAA 57.973 36.000 0.00 0.00 0.00 3.02
348 349 6.618287 CGGGAGCAAAAATTATATCACTGA 57.382 37.500 0.00 0.00 0.00 3.41
373 374 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
374 375 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
375 376 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
376 377 2.363359 AGTTTAACCAACGAGACCGACT 59.637 45.455 0.00 0.00 40.75 4.18
377 378 2.747436 AGTTTAACCAACGAGACCGAC 58.253 47.619 0.00 0.00 40.75 4.79
378 379 3.457610 AAGTTTAACCAACGAGACCGA 57.542 42.857 0.00 0.00 40.75 4.69
379 380 3.120121 CGTAAGTTTAACCAACGAGACCG 59.880 47.826 12.48 0.00 40.75 4.79
380 381 3.429881 CCGTAAGTTTAACCAACGAGACC 59.570 47.826 17.47 0.00 40.75 3.85
381 382 4.051237 ACCGTAAGTTTAACCAACGAGAC 58.949 43.478 17.47 0.00 40.75 3.36
382 383 4.202101 TGACCGTAAGTTTAACCAACGAGA 60.202 41.667 17.47 2.83 40.75 4.04
383 384 4.050553 TGACCGTAAGTTTAACCAACGAG 58.949 43.478 17.47 11.57 40.75 4.18
384 385 4.052159 TGACCGTAAGTTTAACCAACGA 57.948 40.909 17.47 0.26 40.75 3.85
385 386 4.792528 TTGACCGTAAGTTTAACCAACG 57.207 40.909 11.30 11.30 40.75 4.10
386 387 6.122850 AGTTTGACCGTAAGTTTAACCAAC 57.877 37.500 0.00 0.00 35.32 3.77
387 388 6.404513 CCAAGTTTGACCGTAAGTTTAACCAA 60.405 38.462 0.00 0.00 0.00 3.67
388 389 5.066246 CCAAGTTTGACCGTAAGTTTAACCA 59.934 40.000 0.00 0.00 0.00 3.67
389 390 5.296531 TCCAAGTTTGACCGTAAGTTTAACC 59.703 40.000 0.00 0.00 0.00 2.85
390 391 6.362210 TCCAAGTTTGACCGTAAGTTTAAC 57.638 37.500 0.00 0.00 0.00 2.01
391 392 6.993902 AGATCCAAGTTTGACCGTAAGTTTAA 59.006 34.615 0.00 0.00 0.00 1.52
392 393 6.527423 AGATCCAAGTTTGACCGTAAGTTTA 58.473 36.000 0.00 0.00 0.00 2.01
393 394 5.374071 AGATCCAAGTTTGACCGTAAGTTT 58.626 37.500 0.00 0.00 0.00 2.66
394 395 4.969484 AGATCCAAGTTTGACCGTAAGTT 58.031 39.130 0.00 0.00 0.00 2.66
395 396 4.566987 GAGATCCAAGTTTGACCGTAAGT 58.433 43.478 0.00 0.00 0.00 2.24
396 397 3.612860 CGAGATCCAAGTTTGACCGTAAG 59.387 47.826 0.00 0.00 0.00 2.34
397 398 3.256383 TCGAGATCCAAGTTTGACCGTAA 59.744 43.478 0.00 0.00 0.00 3.18
398 399 2.821378 TCGAGATCCAAGTTTGACCGTA 59.179 45.455 0.00 0.00 0.00 4.02
399 400 1.616865 TCGAGATCCAAGTTTGACCGT 59.383 47.619 0.00 0.00 0.00 4.83
400 401 1.993370 GTCGAGATCCAAGTTTGACCG 59.007 52.381 0.00 0.00 0.00 4.79
401 402 3.040147 TGTCGAGATCCAAGTTTGACC 57.960 47.619 0.00 0.00 0.00 4.02
402 403 3.120511 GCTTGTCGAGATCCAAGTTTGAC 60.121 47.826 13.20 2.80 40.13 3.18
403 404 3.067106 GCTTGTCGAGATCCAAGTTTGA 58.933 45.455 13.20 0.00 40.13 2.69
404 405 2.159787 CGCTTGTCGAGATCCAAGTTTG 60.160 50.000 13.20 3.09 40.13 2.93
405 406 2.069273 CGCTTGTCGAGATCCAAGTTT 58.931 47.619 13.20 0.00 40.13 2.66
406 407 1.714794 CGCTTGTCGAGATCCAAGTT 58.285 50.000 13.20 0.00 40.13 2.66
407 408 0.737715 GCGCTTGTCGAGATCCAAGT 60.738 55.000 13.20 0.00 40.13 3.16
408 409 1.746727 CGCGCTTGTCGAGATCCAAG 61.747 60.000 5.56 8.68 40.54 3.61
409 410 1.805539 CGCGCTTGTCGAGATCCAA 60.806 57.895 5.56 0.00 40.54 3.53
410 411 2.202610 CGCGCTTGTCGAGATCCA 60.203 61.111 5.56 0.00 40.54 3.41
411 412 2.685387 ATCCGCGCTTGTCGAGATCC 62.685 60.000 5.56 0.00 40.54 3.36
412 413 1.299468 ATCCGCGCTTGTCGAGATC 60.299 57.895 5.56 0.00 40.54 2.75
413 414 1.589993 CATCCGCGCTTGTCGAGAT 60.590 57.895 5.56 0.00 40.54 2.75
414 415 2.202610 CATCCGCGCTTGTCGAGA 60.203 61.111 5.56 0.00 40.54 4.04
415 416 3.918220 GCATCCGCGCTTGTCGAG 61.918 66.667 5.56 0.00 41.67 4.04
416 417 4.733371 TGCATCCGCGCTTGTCGA 62.733 61.111 5.56 0.00 42.97 4.20
417 418 4.505217 GTGCATCCGCGCTTGTCG 62.505 66.667 5.56 0.00 45.49 4.35
424 425 1.396648 TCAAAATGTAGTGCATCCGCG 59.603 47.619 0.00 0.00 42.97 6.46
425 426 3.485947 TTCAAAATGTAGTGCATCCGC 57.514 42.857 0.00 0.00 36.67 5.54
426 427 3.845775 CGTTTCAAAATGTAGTGCATCCG 59.154 43.478 0.00 0.00 36.67 4.18
427 428 3.608073 GCGTTTCAAAATGTAGTGCATCC 59.392 43.478 0.00 0.00 36.67 3.51
428 429 4.225984 TGCGTTTCAAAATGTAGTGCATC 58.774 39.130 0.00 0.00 36.67 3.91
429 430 4.229096 CTGCGTTTCAAAATGTAGTGCAT 58.771 39.130 0.00 0.00 40.03 3.96
430 431 3.549827 CCTGCGTTTCAAAATGTAGTGCA 60.550 43.478 10.56 0.00 36.34 4.57
431 432 2.979813 CCTGCGTTTCAAAATGTAGTGC 59.020 45.455 10.56 0.00 36.34 4.40
432 433 3.252215 TCCCTGCGTTTCAAAATGTAGTG 59.748 43.478 10.56 1.82 36.34 2.74
433 434 3.482436 TCCCTGCGTTTCAAAATGTAGT 58.518 40.909 10.56 0.00 36.34 2.73
434 435 3.502211 ACTCCCTGCGTTTCAAAATGTAG 59.498 43.478 5.98 5.98 37.37 2.74
435 436 3.482436 ACTCCCTGCGTTTCAAAATGTA 58.518 40.909 0.00 0.00 0.00 2.29
436 437 2.306847 ACTCCCTGCGTTTCAAAATGT 58.693 42.857 0.00 0.00 0.00 2.71
437 438 4.701956 ATACTCCCTGCGTTTCAAAATG 57.298 40.909 0.00 0.00 0.00 2.32
438 439 7.506114 TCTATATACTCCCTGCGTTTCAAAAT 58.494 34.615 0.00 0.00 0.00 1.82
439 440 6.880484 TCTATATACTCCCTGCGTTTCAAAA 58.120 36.000 0.00 0.00 0.00 2.44
440 441 6.474140 TCTATATACTCCCTGCGTTTCAAA 57.526 37.500 0.00 0.00 0.00 2.69
441 442 6.493802 AGATCTATATACTCCCTGCGTTTCAA 59.506 38.462 0.00 0.00 0.00 2.69
442 443 6.010850 AGATCTATATACTCCCTGCGTTTCA 58.989 40.000 0.00 0.00 0.00 2.69
443 444 6.518208 AGATCTATATACTCCCTGCGTTTC 57.482 41.667 0.00 0.00 0.00 2.78
444 445 6.919775 AAGATCTATATACTCCCTGCGTTT 57.080 37.500 0.00 0.00 0.00 3.60
445 446 6.267928 ACAAAGATCTATATACTCCCTGCGTT 59.732 38.462 0.00 0.00 0.00 4.84
446 447 5.775701 ACAAAGATCTATATACTCCCTGCGT 59.224 40.000 0.00 0.00 0.00 5.24
447 448 6.274157 ACAAAGATCTATATACTCCCTGCG 57.726 41.667 0.00 0.00 0.00 5.18
448 449 7.755822 CGTTACAAAGATCTATATACTCCCTGC 59.244 40.741 0.00 0.00 0.00 4.85
449 450 8.244802 CCGTTACAAAGATCTATATACTCCCTG 58.755 40.741 0.00 0.00 0.00 4.45
450 451 7.949006 ACCGTTACAAAGATCTATATACTCCCT 59.051 37.037 0.00 0.00 0.00 4.20
451 452 8.120140 ACCGTTACAAAGATCTATATACTCCC 57.880 38.462 0.00 0.00 0.00 4.30
456 457 9.865321 GGCATAACCGTTACAAAGATCTATATA 57.135 33.333 0.00 0.00 0.00 0.86
457 458 8.773404 GGCATAACCGTTACAAAGATCTATAT 57.227 34.615 0.00 0.00 0.00 0.86
474 475 1.597663 CGTCAAAGGATCGGCATAACC 59.402 52.381 0.00 0.00 0.00 2.85
475 476 2.030457 CACGTCAAAGGATCGGCATAAC 59.970 50.000 0.00 0.00 0.00 1.89
476 477 2.093921 TCACGTCAAAGGATCGGCATAA 60.094 45.455 0.00 0.00 0.00 1.90
477 478 1.478916 TCACGTCAAAGGATCGGCATA 59.521 47.619 0.00 0.00 0.00 3.14
478 479 0.249120 TCACGTCAAAGGATCGGCAT 59.751 50.000 0.00 0.00 0.00 4.40
479 480 0.034198 TTCACGTCAAAGGATCGGCA 59.966 50.000 0.00 0.00 0.00 5.69
480 481 0.721718 CTTCACGTCAAAGGATCGGC 59.278 55.000 0.00 0.00 0.00 5.54
481 482 2.080286 ACTTCACGTCAAAGGATCGG 57.920 50.000 10.95 0.00 0.00 4.18
482 483 3.057019 TCAACTTCACGTCAAAGGATCG 58.943 45.455 10.95 0.00 0.00 3.69
483 484 5.205565 GTTTCAACTTCACGTCAAAGGATC 58.794 41.667 10.95 0.00 0.00 3.36
484 485 4.638421 TGTTTCAACTTCACGTCAAAGGAT 59.362 37.500 10.95 0.00 0.00 3.24
485 486 4.004314 TGTTTCAACTTCACGTCAAAGGA 58.996 39.130 10.95 0.00 0.00 3.36
486 487 4.349663 TGTTTCAACTTCACGTCAAAGG 57.650 40.909 10.95 0.00 0.00 3.11
487 488 8.560576 AATTATGTTTCAACTTCACGTCAAAG 57.439 30.769 5.81 5.81 0.00 2.77
507 508 9.855021 GCTTGGTGTTTCAGTTGTATTAATTAT 57.145 29.630 0.00 0.00 0.00 1.28
508 509 8.851145 TGCTTGGTGTTTCAGTTGTATTAATTA 58.149 29.630 0.00 0.00 0.00 1.40
509 510 7.721402 TGCTTGGTGTTTCAGTTGTATTAATT 58.279 30.769 0.00 0.00 0.00 1.40
510 511 7.283625 TGCTTGGTGTTTCAGTTGTATTAAT 57.716 32.000 0.00 0.00 0.00 1.40
511 512 6.701145 TGCTTGGTGTTTCAGTTGTATTAA 57.299 33.333 0.00 0.00 0.00 1.40
512 513 6.701145 TTGCTTGGTGTTTCAGTTGTATTA 57.299 33.333 0.00 0.00 0.00 0.98
513 514 5.590530 TTGCTTGGTGTTTCAGTTGTATT 57.409 34.783 0.00 0.00 0.00 1.89
514 515 5.590530 TTTGCTTGGTGTTTCAGTTGTAT 57.409 34.783 0.00 0.00 0.00 2.29
515 516 5.184096 TCTTTTGCTTGGTGTTTCAGTTGTA 59.816 36.000 0.00 0.00 0.00 2.41
516 517 3.951775 TTTGCTTGGTGTTTCAGTTGT 57.048 38.095 0.00 0.00 0.00 3.32
517 518 4.327087 GTCTTTTGCTTGGTGTTTCAGTTG 59.673 41.667 0.00 0.00 0.00 3.16
518 519 4.494484 GTCTTTTGCTTGGTGTTTCAGTT 58.506 39.130 0.00 0.00 0.00 3.16
519 520 3.427503 CGTCTTTTGCTTGGTGTTTCAGT 60.428 43.478 0.00 0.00 0.00 3.41
520 521 3.108144 CGTCTTTTGCTTGGTGTTTCAG 58.892 45.455 0.00 0.00 0.00 3.02
521 522 2.733858 GCGTCTTTTGCTTGGTGTTTCA 60.734 45.455 0.00 0.00 0.00 2.69
528 529 2.429069 GCGGCGTCTTTTGCTTGG 60.429 61.111 9.37 0.00 0.00 3.61
543 544 1.154225 GGCCACAAATTCACGAGCG 60.154 57.895 0.00 0.00 0.00 5.03
550 551 3.467374 TTTGAACCTGGCCACAAATTC 57.533 42.857 13.62 9.94 0.00 2.17
595 596 3.139118 GAACTGGATACGTGCGCGC 62.139 63.158 27.26 27.26 42.83 6.86
596 597 1.076533 AAGAACTGGATACGTGCGCG 61.077 55.000 19.78 19.78 44.93 6.86
597 598 0.370273 CAAGAACTGGATACGTGCGC 59.630 55.000 0.00 0.00 42.51 6.09
623 624 0.674895 CAGCACCAACCTGCCTACTC 60.675 60.000 0.00 0.00 37.96 2.59
665 673 0.980423 GCTAGCTAGGGGGATCCTTG 59.020 60.000 22.10 0.00 45.47 3.61
709 743 2.435805 TGGCAGAAGGATCCATAGTGTC 59.564 50.000 15.82 7.75 0.00 3.67
710 744 2.481441 TGGCAGAAGGATCCATAGTGT 58.519 47.619 15.82 0.00 0.00 3.55
718 752 2.545532 CGACTGAGATGGCAGAAGGATC 60.546 54.545 0.00 0.00 39.20 3.36
739 787 3.567164 CCATGCATGACCAAGAGATTACC 59.433 47.826 28.31 0.00 0.00 2.85
762 819 0.319469 TCATCACGTCGCTCTTGCAA 60.319 50.000 0.00 0.00 39.64 4.08
767 824 0.028242 GTCGATCATCACGTCGCTCT 59.972 55.000 0.00 0.00 37.74 4.09
771 828 1.972640 GCTATGTCGATCATCACGTCG 59.027 52.381 4.15 0.00 37.91 5.12
938 1001 2.362397 CCCGTGTATCTGCTCTGTATGT 59.638 50.000 0.00 0.00 0.00 2.29
1134 1428 4.228567 TTGGCGTCGCACACCTGA 62.229 61.111 20.50 0.00 0.00 3.86
1179 1473 1.846124 GGTGTTGAGGGTGAGGGGA 60.846 63.158 0.00 0.00 0.00 4.81
1402 1718 2.564471 TCGGAAGAGTTCGAGGACC 58.436 57.895 0.00 0.00 34.84 4.46
1432 1748 4.087182 TCTGATTTAGAGTTGAGGGACGT 58.913 43.478 0.00 0.00 0.00 4.34
1450 1766 2.594131 TGAGGGACGAAAACTCTCTGA 58.406 47.619 0.00 0.00 36.03 3.27
1452 1768 2.966516 AGTTGAGGGACGAAAACTCTCT 59.033 45.455 0.00 0.00 36.03 3.10
1475 1791 3.485633 GACGAAAACTATCCGGTTTTGC 58.514 45.455 0.00 0.00 45.62 3.68
1506 1822 0.037046 GGACTAAAACCGCCCGAAGA 60.037 55.000 0.00 0.00 0.00 2.87
1535 1851 9.658475 TTCAATTTTACTGTTCACTGATTTACG 57.342 29.630 0.00 0.00 0.00 3.18
1578 1910 8.981647 GTTCATTTGATGCTGTAAAATTTCAGT 58.018 29.630 8.27 0.00 34.57 3.41
1597 1929 3.433615 GTCTTGCGCACTAGAGTTCATTT 59.566 43.478 11.12 0.00 0.00 2.32
1600 1932 1.336887 GGTCTTGCGCACTAGAGTTCA 60.337 52.381 11.12 0.00 0.00 3.18
1601 1933 1.351153 GGTCTTGCGCACTAGAGTTC 58.649 55.000 11.12 0.00 0.00 3.01
1779 2116 6.144241 TGTCATTTGATCACGAAATTTTGCAG 59.856 34.615 5.27 0.00 0.00 4.41
1927 2302 1.547372 GAGGCTTGGATGCACAACATT 59.453 47.619 0.00 0.00 39.84 2.71
1934 2309 2.097036 CATCAAAGAGGCTTGGATGCA 58.903 47.619 10.62 0.00 34.04 3.96
1938 2313 0.405198 TGGCATCAAAGAGGCTTGGA 59.595 50.000 3.61 0.00 39.44 3.53
2177 7057 3.617284 GGTTTTAGTCCGGGATGAACAT 58.383 45.455 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.