Multiple sequence alignment - TraesCS4B01G361700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G361700 chr4B 100.000 8807 0 0 1 8807 650896965 650888159 0.000000e+00 16264
1 TraesCS4B01G361700 chr4D 93.601 8501 289 141 448 8807 504281842 504273456 0.000000e+00 12449
2 TraesCS4B01G361700 chr5A 96.198 7022 184 28 1801 8807 688951845 688944892 0.000000e+00 11411
3 TraesCS4B01G361700 chr5A 84.685 999 69 41 525 1478 688953137 688952178 0.000000e+00 920
4 TraesCS4B01G361700 chr5A 84.502 271 23 7 1451 1705 688952155 688951888 5.280000e-62 250
5 TraesCS4B01G361700 chrUn 100.000 391 0 0 5112 5502 479854443 479854053 0.000000e+00 723
6 TraesCS4B01G361700 chr3B 97.714 350 8 0 3961 4310 433639544 433639893 3.520000e-168 603
7 TraesCS4B01G361700 chr7D 84.512 297 40 1 6454 6744 591386719 591387015 1.120000e-73 289
8 TraesCS4B01G361700 chr4A 85.294 136 18 1 185 318 595044773 595044908 1.190000e-28 139
9 TraesCS4B01G361700 chr1D 81.250 144 23 2 183 323 383758220 383758078 7.230000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G361700 chr4B 650888159 650896965 8806 True 16264.000000 16264 100.000000 1 8807 1 chr4B.!!$R1 8806
1 TraesCS4B01G361700 chr4D 504273456 504281842 8386 True 12449.000000 12449 93.601000 448 8807 1 chr4D.!!$R1 8359
2 TraesCS4B01G361700 chr5A 688944892 688953137 8245 True 4193.666667 11411 88.461667 525 8807 3 chr5A.!!$R1 8282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.034337 TCCGACAAAAGGAACCGAGG 59.966 55.000 0.00 0.00 34.33 4.63 F
286 287 0.036765 AGATTTACCGTGCTCGCCAA 60.037 50.000 1.89 0.00 35.54 4.52 F
1825 2041 0.034670 ATGCTCAGGGTTTCAGGCTC 60.035 55.000 0.00 0.00 0.00 4.70 F
1862 2078 0.650512 CGCTACGTGCATTTACTGGG 59.349 55.000 0.00 0.00 43.06 4.45 F
2368 2585 0.875059 AGTTTTGCAGGTAAGCGAGC 59.125 50.000 0.00 0.00 37.31 5.03 F
2874 3091 1.282382 TAGGGGGCACTTACCAAGAC 58.718 55.000 0.00 0.00 0.00 3.01 F
4083 4324 1.153086 ACATGCTGAGCGGGATTCC 60.153 57.895 0.00 0.00 0.00 3.01 F
4914 5155 3.142174 AGAGAAGTTCCGAAAAAGCCAG 58.858 45.455 0.00 0.00 0.00 4.85 F
5110 5351 1.154469 GACTTGCGGCGCTACAAAC 60.154 57.895 33.26 14.94 0.00 2.93 F
5728 5969 4.503741 TTTATGCAACAAGAGCAGGAAC 57.496 40.909 0.00 0.00 46.36 3.62 F
7278 7520 4.478317 TCCTTCATATGAACTGGGACCATT 59.522 41.667 14.23 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1958 0.168128 GCGGATTTTCACAGGTTCGG 59.832 55.000 0.00 0.00 0.00 4.30 R
1897 2113 0.391661 CGATACTGCAGGCACCTGTT 60.392 55.000 19.93 5.81 45.24 3.16 R
2954 3171 1.208870 CGCATTGCACGCCTGTTAA 59.791 52.632 9.69 0.00 0.00 2.01 R
3264 3496 4.828829 AGGGTGTTTACTTCCAACTATCG 58.171 43.478 0.00 0.00 0.00 2.92 R
4026 4267 1.999024 GCTAGCTCAGTCTGTTGCTTC 59.001 52.381 21.39 13.44 37.02 3.86 R
4665 4906 1.152567 CTGCCCTTTTCCCACACCA 60.153 57.895 0.00 0.00 0.00 4.17 R
5070 5311 5.412594 GTCATCATTTTCCTGCTGTTGTAGA 59.587 40.000 0.00 0.00 0.00 2.59 R
6626 6867 3.624410 TGCTTCATGTACATGTGATGCTC 59.376 43.478 30.03 15.88 42.59 4.26 R
6789 7030 4.021192 AGGAACATCAATGCGGTGATTTTT 60.021 37.500 0.00 0.00 36.04 1.94 R
7435 7681 4.223953 TCTACAGTATGGACAATCCCTCC 58.776 47.826 0.00 0.00 43.62 4.30 R
8738 8991 3.507162 TGCTTGTCTTGGATCCTTCAA 57.493 42.857 14.23 11.31 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.543231 TTAAGGATTGAACTACTTCCTAGAAGA 57.457 33.333 11.17 0.00 37.62 2.87
51 52 8.437274 AAGGATTGAACTACTTCCTAGAAGAA 57.563 34.615 11.17 0.00 37.62 2.52
52 53 8.616799 AGGATTGAACTACTTCCTAGAAGAAT 57.383 34.615 11.17 0.00 36.83 2.40
53 54 9.052365 AGGATTGAACTACTTCCTAGAAGAATT 57.948 33.333 11.17 2.58 36.83 2.17
54 55 9.674068 GGATTGAACTACTTCCTAGAAGAATTT 57.326 33.333 11.17 1.12 0.00 1.82
61 62 9.825109 ACTACTTCCTAGAAGAATTTTAGATGC 57.175 33.333 11.17 0.00 0.00 3.91
63 64 8.729805 ACTTCCTAGAAGAATTTTAGATGCTG 57.270 34.615 11.17 0.00 0.00 4.41
64 65 7.281999 ACTTCCTAGAAGAATTTTAGATGCTGC 59.718 37.037 11.17 0.00 0.00 5.25
65 66 6.893583 TCCTAGAAGAATTTTAGATGCTGCT 58.106 36.000 0.00 0.00 0.00 4.24
66 67 8.023021 TCCTAGAAGAATTTTAGATGCTGCTA 57.977 34.615 0.00 0.00 0.00 3.49
67 68 8.654997 TCCTAGAAGAATTTTAGATGCTGCTAT 58.345 33.333 0.00 0.00 0.00 2.97
68 69 9.282569 CCTAGAAGAATTTTAGATGCTGCTATT 57.717 33.333 0.00 0.00 0.00 1.73
98 99 9.599322 GCATCTAAAATTGTAAGGATTCATACG 57.401 33.333 0.00 0.00 0.00 3.06
133 134 8.983307 AAGAAATGAGATTCTTGAATTTGCTC 57.017 30.769 1.76 1.54 45.47 4.26
134 135 7.545489 AGAAATGAGATTCTTGAATTTGCTCC 58.455 34.615 7.33 0.00 36.23 4.70
135 136 6.845758 AATGAGATTCTTGAATTTGCTCCA 57.154 33.333 0.00 0.00 0.00 3.86
136 137 5.633830 TGAGATTCTTGAATTTGCTCCAC 57.366 39.130 0.00 0.00 0.00 4.02
137 138 5.319453 TGAGATTCTTGAATTTGCTCCACT 58.681 37.500 0.00 0.00 0.00 4.00
138 139 5.771666 TGAGATTCTTGAATTTGCTCCACTT 59.228 36.000 0.00 0.00 0.00 3.16
139 140 6.942005 TGAGATTCTTGAATTTGCTCCACTTA 59.058 34.615 0.00 0.00 0.00 2.24
140 141 7.094634 TGAGATTCTTGAATTTGCTCCACTTAC 60.095 37.037 0.00 0.00 0.00 2.34
141 142 6.716628 AGATTCTTGAATTTGCTCCACTTACA 59.283 34.615 0.00 0.00 0.00 2.41
142 143 5.947228 TCTTGAATTTGCTCCACTTACAG 57.053 39.130 0.00 0.00 0.00 2.74
143 144 5.620206 TCTTGAATTTGCTCCACTTACAGA 58.380 37.500 0.00 0.00 0.00 3.41
144 145 6.240894 TCTTGAATTTGCTCCACTTACAGAT 58.759 36.000 0.00 0.00 0.00 2.90
145 146 5.885230 TGAATTTGCTCCACTTACAGATG 57.115 39.130 0.00 0.00 0.00 2.90
146 147 4.701651 TGAATTTGCTCCACTTACAGATGG 59.298 41.667 0.00 0.00 37.32 3.51
147 148 2.113860 TTGCTCCACTTACAGATGGC 57.886 50.000 0.00 0.00 35.81 4.40
148 149 0.253044 TGCTCCACTTACAGATGGCC 59.747 55.000 0.00 0.00 35.81 5.36
149 150 0.543749 GCTCCACTTACAGATGGCCT 59.456 55.000 3.32 0.00 35.81 5.19
150 151 1.065126 GCTCCACTTACAGATGGCCTT 60.065 52.381 3.32 0.00 35.81 4.35
151 152 2.619074 GCTCCACTTACAGATGGCCTTT 60.619 50.000 3.32 0.00 35.81 3.11
152 153 3.690460 CTCCACTTACAGATGGCCTTTT 58.310 45.455 3.32 0.00 35.81 2.27
153 154 4.843728 CTCCACTTACAGATGGCCTTTTA 58.156 43.478 3.32 0.00 35.81 1.52
154 155 5.249780 TCCACTTACAGATGGCCTTTTAA 57.750 39.130 3.32 0.00 35.81 1.52
155 156 5.636123 TCCACTTACAGATGGCCTTTTAAA 58.364 37.500 3.32 0.00 35.81 1.52
156 157 6.071984 TCCACTTACAGATGGCCTTTTAAAA 58.928 36.000 3.32 0.00 35.81 1.52
157 158 6.208599 TCCACTTACAGATGGCCTTTTAAAAG 59.791 38.462 19.19 19.19 35.81 2.27
158 159 5.863935 CACTTACAGATGGCCTTTTAAAAGC 59.136 40.000 20.45 15.50 34.69 3.51
159 160 3.575965 ACAGATGGCCTTTTAAAAGCG 57.424 42.857 20.45 14.85 34.69 4.68
160 161 2.231235 ACAGATGGCCTTTTAAAAGCGG 59.769 45.455 20.45 11.39 34.69 5.52
161 162 2.491693 CAGATGGCCTTTTAAAAGCGGA 59.508 45.455 20.45 7.72 34.69 5.54
162 163 2.492088 AGATGGCCTTTTAAAAGCGGAC 59.508 45.455 20.45 12.84 34.69 4.79
163 164 0.594110 TGGCCTTTTAAAAGCGGACG 59.406 50.000 20.45 9.12 34.69 4.79
164 165 0.594602 GGCCTTTTAAAAGCGGACGT 59.405 50.000 20.45 0.00 34.69 4.34
165 166 1.400629 GGCCTTTTAAAAGCGGACGTC 60.401 52.381 20.45 7.13 34.69 4.34
166 167 1.723701 GCCTTTTAAAAGCGGACGTCG 60.724 52.381 20.45 6.26 42.76 5.12
167 168 1.136169 CCTTTTAAAAGCGGACGTCGG 60.136 52.381 20.45 17.98 39.69 4.79
168 169 1.794116 CTTTTAAAAGCGGACGTCGGA 59.206 47.619 25.40 2.39 39.69 4.55
169 170 2.083167 TTTAAAAGCGGACGTCGGAT 57.917 45.000 25.40 17.54 39.69 4.18
170 171 2.937469 TTAAAAGCGGACGTCGGATA 57.063 45.000 25.40 9.98 39.69 2.59
171 172 3.441496 TTAAAAGCGGACGTCGGATAT 57.559 42.857 25.40 14.44 39.69 1.63
172 173 1.567504 AAAAGCGGACGTCGGATATG 58.432 50.000 25.40 4.94 39.69 1.78
173 174 0.874607 AAAGCGGACGTCGGATATGC 60.875 55.000 25.40 13.87 39.69 3.14
174 175 2.011741 AAGCGGACGTCGGATATGCA 62.012 55.000 25.40 0.00 39.69 3.96
175 176 1.590525 GCGGACGTCGGATATGCAA 60.591 57.895 25.40 0.00 39.69 4.08
176 177 1.548973 GCGGACGTCGGATATGCAAG 61.549 60.000 25.40 1.01 39.69 4.01
177 178 1.548973 CGGACGTCGGATATGCAAGC 61.549 60.000 17.47 0.00 34.75 4.01
178 179 0.529773 GGACGTCGGATATGCAAGCA 60.530 55.000 9.92 0.00 0.00 3.91
179 180 1.502231 GACGTCGGATATGCAAGCAT 58.498 50.000 12.66 12.66 40.19 3.79
180 181 1.193203 GACGTCGGATATGCAAGCATG 59.807 52.381 17.26 1.02 37.82 4.06
181 182 0.514255 CGTCGGATATGCAAGCATGG 59.486 55.000 17.26 4.69 37.82 3.66
182 183 0.239347 GTCGGATATGCAAGCATGGC 59.761 55.000 17.26 8.75 37.82 4.40
190 191 1.430479 TGCAAGCATGGCATTTTTCG 58.570 45.000 0.00 0.00 42.69 3.46
191 192 1.270199 TGCAAGCATGGCATTTTTCGT 60.270 42.857 0.00 0.00 42.69 3.85
192 193 1.127213 GCAAGCATGGCATTTTTCGTG 59.873 47.619 0.00 0.00 32.79 4.35
193 194 1.727880 CAAGCATGGCATTTTTCGTGG 59.272 47.619 0.00 0.00 0.00 4.94
194 195 0.390209 AGCATGGCATTTTTCGTGGC 60.390 50.000 0.00 0.00 41.99 5.01
203 204 6.843069 GGCATTTTTCGTGGCAATTTATAT 57.157 33.333 0.00 0.00 41.35 0.86
204 205 7.245419 GGCATTTTTCGTGGCAATTTATATT 57.755 32.000 0.00 0.00 41.35 1.28
205 206 7.125113 GGCATTTTTCGTGGCAATTTATATTG 58.875 34.615 1.86 1.86 43.28 1.90
206 207 7.125113 GCATTTTTCGTGGCAATTTATATTGG 58.875 34.615 7.83 0.00 41.21 3.16
216 217 6.621737 GCAATTTATATTGGCGTGATGATG 57.378 37.500 7.83 0.00 41.21 3.07
217 218 5.574055 GCAATTTATATTGGCGTGATGATGG 59.426 40.000 7.83 0.00 41.21 3.51
218 219 4.764679 TTTATATTGGCGTGATGATGGC 57.235 40.909 0.00 0.00 0.00 4.40
219 220 1.159285 ATATTGGCGTGATGATGGCG 58.841 50.000 0.00 0.00 36.42 5.69
220 221 0.105778 TATTGGCGTGATGATGGCGA 59.894 50.000 0.00 0.00 36.42 5.54
221 222 0.747644 ATTGGCGTGATGATGGCGAA 60.748 50.000 0.00 0.00 36.42 4.70
222 223 0.747644 TTGGCGTGATGATGGCGAAT 60.748 50.000 0.00 0.00 36.42 3.34
223 224 0.747644 TGGCGTGATGATGGCGAATT 60.748 50.000 0.00 0.00 36.42 2.17
224 225 0.381801 GGCGTGATGATGGCGAATTT 59.618 50.000 0.00 0.00 0.00 1.82
225 226 1.601903 GGCGTGATGATGGCGAATTTA 59.398 47.619 0.00 0.00 0.00 1.40
226 227 2.349817 GGCGTGATGATGGCGAATTTAG 60.350 50.000 0.00 0.00 0.00 1.85
227 228 2.287915 GCGTGATGATGGCGAATTTAGT 59.712 45.455 0.00 0.00 0.00 2.24
228 229 3.242739 GCGTGATGATGGCGAATTTAGTT 60.243 43.478 0.00 0.00 0.00 2.24
229 230 4.730613 GCGTGATGATGGCGAATTTAGTTT 60.731 41.667 0.00 0.00 0.00 2.66
230 231 4.730042 CGTGATGATGGCGAATTTAGTTTG 59.270 41.667 0.00 0.00 0.00 2.93
231 232 4.500477 GTGATGATGGCGAATTTAGTTTGC 59.500 41.667 0.00 0.00 44.98 3.68
237 238 3.688198 GCGAATTTAGTTTGCAAGCAC 57.312 42.857 16.04 4.53 45.05 4.40
238 239 2.088969 GCGAATTTAGTTTGCAAGCACG 59.911 45.455 16.04 11.05 45.05 5.34
239 240 2.656422 CGAATTTAGTTTGCAAGCACGG 59.344 45.455 16.04 0.00 0.00 4.94
240 241 2.723124 ATTTAGTTTGCAAGCACGGG 57.277 45.000 16.04 0.00 0.00 5.28
241 242 1.681538 TTTAGTTTGCAAGCACGGGA 58.318 45.000 16.04 0.00 0.00 5.14
242 243 1.681538 TTAGTTTGCAAGCACGGGAA 58.318 45.000 16.04 0.02 0.00 3.97
243 244 1.904287 TAGTTTGCAAGCACGGGAAT 58.096 45.000 16.04 0.00 0.00 3.01
244 245 1.039856 AGTTTGCAAGCACGGGAATT 58.960 45.000 16.04 0.00 0.00 2.17
245 246 1.000274 AGTTTGCAAGCACGGGAATTC 60.000 47.619 16.04 0.00 0.00 2.17
246 247 1.000274 GTTTGCAAGCACGGGAATTCT 60.000 47.619 8.58 0.00 0.00 2.40
247 248 0.881118 TTGCAAGCACGGGAATTCTC 59.119 50.000 5.23 0.00 0.00 2.87
248 249 0.960364 TGCAAGCACGGGAATTCTCC 60.960 55.000 5.23 4.25 41.59 3.71
258 259 3.067684 GGGAATTCTCCGACAAAAGGA 57.932 47.619 5.23 0.00 43.51 3.36
259 260 3.418047 GGGAATTCTCCGACAAAAGGAA 58.582 45.455 5.23 0.00 43.51 3.36
260 261 3.190744 GGGAATTCTCCGACAAAAGGAAC 59.809 47.826 5.23 0.00 43.51 3.62
261 262 3.190744 GGAATTCTCCGACAAAAGGAACC 59.809 47.826 5.23 0.00 37.32 3.62
262 263 1.873698 TTCTCCGACAAAAGGAACCG 58.126 50.000 0.00 0.00 37.32 4.44
263 264 1.042229 TCTCCGACAAAAGGAACCGA 58.958 50.000 0.00 0.00 37.32 4.69
264 265 1.000506 TCTCCGACAAAAGGAACCGAG 59.999 52.381 0.00 0.00 37.32 4.63
265 266 0.034337 TCCGACAAAAGGAACCGAGG 59.966 55.000 0.00 0.00 34.33 4.63
266 267 1.574702 CCGACAAAAGGAACCGAGGC 61.575 60.000 0.00 0.00 0.00 4.70
267 268 0.882927 CGACAAAAGGAACCGAGGCA 60.883 55.000 0.00 0.00 0.00 4.75
268 269 0.875059 GACAAAAGGAACCGAGGCAG 59.125 55.000 0.00 0.00 0.00 4.85
269 270 0.472471 ACAAAAGGAACCGAGGCAGA 59.528 50.000 0.00 0.00 0.00 4.26
270 271 1.073923 ACAAAAGGAACCGAGGCAGAT 59.926 47.619 0.00 0.00 0.00 2.90
271 272 2.162681 CAAAAGGAACCGAGGCAGATT 58.837 47.619 0.00 0.00 0.00 2.40
272 273 2.558359 CAAAAGGAACCGAGGCAGATTT 59.442 45.455 0.00 0.00 0.00 2.17
273 274 3.713826 AAAGGAACCGAGGCAGATTTA 57.286 42.857 0.00 0.00 0.00 1.40
274 275 2.693267 AGGAACCGAGGCAGATTTAC 57.307 50.000 0.00 0.00 0.00 2.01
275 276 1.209747 AGGAACCGAGGCAGATTTACC 59.790 52.381 0.00 0.00 0.00 2.85
276 277 1.287425 GAACCGAGGCAGATTTACCG 58.713 55.000 0.00 0.00 0.00 4.02
277 278 0.611714 AACCGAGGCAGATTTACCGT 59.388 50.000 0.00 0.00 0.00 4.83
278 279 0.108329 ACCGAGGCAGATTTACCGTG 60.108 55.000 0.00 0.00 0.00 4.94
279 280 1.429148 CCGAGGCAGATTTACCGTGC 61.429 60.000 0.00 0.00 36.42 5.34
280 281 0.460284 CGAGGCAGATTTACCGTGCT 60.460 55.000 0.00 0.00 37.37 4.40
281 282 1.291132 GAGGCAGATTTACCGTGCTC 58.709 55.000 0.00 0.00 37.37 4.26
282 283 0.460284 AGGCAGATTTACCGTGCTCG 60.460 55.000 0.14 0.14 37.37 5.03
283 284 1.348594 GCAGATTTACCGTGCTCGC 59.651 57.895 1.89 0.00 34.23 5.03
284 285 2.006772 CAGATTTACCGTGCTCGCC 58.993 57.895 1.89 0.00 35.54 5.54
285 286 0.739462 CAGATTTACCGTGCTCGCCA 60.739 55.000 1.89 0.00 35.54 5.69
286 287 0.036765 AGATTTACCGTGCTCGCCAA 60.037 50.000 1.89 0.00 35.54 4.52
287 288 0.373716 GATTTACCGTGCTCGCCAAG 59.626 55.000 1.89 0.00 35.54 3.61
288 289 0.321298 ATTTACCGTGCTCGCCAAGT 60.321 50.000 1.89 0.00 35.54 3.16
289 290 0.317799 TTTACCGTGCTCGCCAAGTA 59.682 50.000 1.89 0.00 35.54 2.24
290 291 0.317799 TTACCGTGCTCGCCAAGTAA 59.682 50.000 1.89 3.44 35.54 2.24
291 292 0.317799 TACCGTGCTCGCCAAGTAAA 59.682 50.000 1.89 0.00 35.54 2.01
292 293 1.226030 ACCGTGCTCGCCAAGTAAAC 61.226 55.000 1.89 0.00 35.54 2.01
293 294 0.949105 CCGTGCTCGCCAAGTAAACT 60.949 55.000 1.89 0.00 35.54 2.66
294 295 0.865769 CGTGCTCGCCAAGTAAACTT 59.134 50.000 0.00 0.00 36.45 2.66
306 307 4.479619 CAAGTAAACTTGCAATCCTCAGC 58.520 43.478 9.75 0.00 45.59 4.26
307 308 2.744202 AGTAAACTTGCAATCCTCAGCG 59.256 45.455 0.00 0.00 0.00 5.18
308 309 1.896220 AAACTTGCAATCCTCAGCGA 58.104 45.000 0.00 0.00 0.00 4.93
309 310 1.896220 AACTTGCAATCCTCAGCGAA 58.104 45.000 0.00 0.00 0.00 4.70
310 311 1.160137 ACTTGCAATCCTCAGCGAAC 58.840 50.000 0.00 0.00 0.00 3.95
311 312 1.159285 CTTGCAATCCTCAGCGAACA 58.841 50.000 0.00 0.00 0.00 3.18
312 313 1.741706 CTTGCAATCCTCAGCGAACAT 59.258 47.619 0.00 0.00 0.00 2.71
313 314 2.689553 TGCAATCCTCAGCGAACATA 57.310 45.000 0.00 0.00 0.00 2.29
314 315 2.984562 TGCAATCCTCAGCGAACATAA 58.015 42.857 0.00 0.00 0.00 1.90
315 316 3.544684 TGCAATCCTCAGCGAACATAAT 58.455 40.909 0.00 0.00 0.00 1.28
316 317 3.947196 TGCAATCCTCAGCGAACATAATT 59.053 39.130 0.00 0.00 0.00 1.40
317 318 4.398988 TGCAATCCTCAGCGAACATAATTT 59.601 37.500 0.00 0.00 0.00 1.82
318 319 4.736793 GCAATCCTCAGCGAACATAATTTG 59.263 41.667 0.00 0.00 0.00 2.32
319 320 5.276270 CAATCCTCAGCGAACATAATTTGG 58.724 41.667 0.00 0.00 0.00 3.28
320 321 2.682856 TCCTCAGCGAACATAATTTGGC 59.317 45.455 0.00 0.00 0.00 4.52
321 322 2.423185 CCTCAGCGAACATAATTTGGCA 59.577 45.455 0.00 0.00 32.97 4.92
322 323 3.067180 CCTCAGCGAACATAATTTGGCAT 59.933 43.478 0.00 0.00 32.97 4.40
323 324 4.275689 CCTCAGCGAACATAATTTGGCATA 59.724 41.667 0.00 0.00 32.97 3.14
324 325 5.048504 CCTCAGCGAACATAATTTGGCATAT 60.049 40.000 0.00 0.00 32.97 1.78
325 326 5.761003 TCAGCGAACATAATTTGGCATATG 58.239 37.500 0.00 0.00 32.97 1.78
326 327 4.383649 CAGCGAACATAATTTGGCATATGC 59.616 41.667 19.79 19.79 41.14 3.14
339 340 3.632855 GCATATGCCTAAAAGTCTGCC 57.367 47.619 17.26 0.00 34.31 4.85
340 341 2.031682 GCATATGCCTAAAAGTCTGCCG 60.032 50.000 17.26 0.00 34.31 5.69
341 342 3.206150 CATATGCCTAAAAGTCTGCCGT 58.794 45.455 0.00 0.00 0.00 5.68
342 343 2.200373 ATGCCTAAAAGTCTGCCGTT 57.800 45.000 0.00 0.00 0.00 4.44
343 344 1.519408 TGCCTAAAAGTCTGCCGTTC 58.481 50.000 0.00 0.00 0.00 3.95
344 345 0.442699 GCCTAAAAGTCTGCCGTTCG 59.557 55.000 0.00 0.00 0.00 3.95
345 346 0.442699 CCTAAAAGTCTGCCGTTCGC 59.557 55.000 0.00 0.00 38.31 4.70
346 347 0.442699 CTAAAAGTCTGCCGTTCGCC 59.557 55.000 0.00 0.00 36.24 5.54
347 348 1.286354 TAAAAGTCTGCCGTTCGCCG 61.286 55.000 0.00 0.00 36.24 6.46
348 349 3.802418 AAAGTCTGCCGTTCGCCGT 62.802 57.895 0.00 0.00 36.24 5.68
349 350 3.802418 AAGTCTGCCGTTCGCCGTT 62.802 57.895 0.00 0.00 36.24 4.44
350 351 3.774702 GTCTGCCGTTCGCCGTTC 61.775 66.667 0.00 0.00 36.24 3.95
365 366 0.859232 CGTTCGCGGGATATTTCAGG 59.141 55.000 6.13 0.00 36.88 3.86
366 367 1.805120 CGTTCGCGGGATATTTCAGGT 60.805 52.381 6.13 0.00 36.88 4.00
367 368 2.544277 CGTTCGCGGGATATTTCAGGTA 60.544 50.000 6.13 0.00 36.88 3.08
368 369 3.660865 GTTCGCGGGATATTTCAGGTAT 58.339 45.455 6.13 0.00 0.00 2.73
369 370 4.616604 CGTTCGCGGGATATTTCAGGTATA 60.617 45.833 6.13 0.00 36.88 1.47
370 371 4.713824 TCGCGGGATATTTCAGGTATAG 57.286 45.455 6.13 0.00 0.00 1.31
371 372 4.338012 TCGCGGGATATTTCAGGTATAGA 58.662 43.478 6.13 0.00 0.00 1.98
372 373 4.398358 TCGCGGGATATTTCAGGTATAGAG 59.602 45.833 6.13 0.00 0.00 2.43
373 374 4.398358 CGCGGGATATTTCAGGTATAGAGA 59.602 45.833 0.00 0.00 0.00 3.10
374 375 5.105877 CGCGGGATATTTCAGGTATAGAGAA 60.106 44.000 0.00 0.00 0.00 2.87
375 376 6.405953 CGCGGGATATTTCAGGTATAGAGAAT 60.406 42.308 0.00 0.00 0.00 2.40
376 377 6.981559 GCGGGATATTTCAGGTATAGAGAATC 59.018 42.308 0.00 0.00 0.00 2.52
377 378 7.363880 GCGGGATATTTCAGGTATAGAGAATCA 60.364 40.741 0.00 0.00 37.82 2.57
378 379 7.976734 CGGGATATTTCAGGTATAGAGAATCAC 59.023 40.741 0.00 0.00 37.82 3.06
379 380 8.261522 GGGATATTTCAGGTATAGAGAATCACC 58.738 40.741 0.00 0.00 37.82 4.02
380 381 8.261522 GGATATTTCAGGTATAGAGAATCACCC 58.738 40.741 0.00 0.00 37.82 4.61
381 382 8.742125 ATATTTCAGGTATAGAGAATCACCCA 57.258 34.615 0.00 0.00 37.82 4.51
382 383 7.639062 ATTTCAGGTATAGAGAATCACCCAT 57.361 36.000 0.00 0.00 37.82 4.00
383 384 6.672266 TTCAGGTATAGAGAATCACCCATC 57.328 41.667 0.00 0.00 37.82 3.51
384 385 5.087323 TCAGGTATAGAGAATCACCCATCC 58.913 45.833 0.00 0.00 37.82 3.51
385 386 4.840680 CAGGTATAGAGAATCACCCATCCA 59.159 45.833 0.00 0.00 37.82 3.41
386 387 5.307976 CAGGTATAGAGAATCACCCATCCAA 59.692 44.000 0.00 0.00 37.82 3.53
387 388 5.911178 AGGTATAGAGAATCACCCATCCAAA 59.089 40.000 0.00 0.00 37.82 3.28
388 389 6.564152 AGGTATAGAGAATCACCCATCCAAAT 59.436 38.462 0.00 0.00 37.82 2.32
389 390 6.881602 GGTATAGAGAATCACCCATCCAAATC 59.118 42.308 0.00 0.00 37.82 2.17
390 391 4.176120 AGAGAATCACCCATCCAAATCC 57.824 45.455 0.00 0.00 37.82 3.01
391 392 3.528905 AGAGAATCACCCATCCAAATCCA 59.471 43.478 0.00 0.00 37.82 3.41
392 393 4.169461 AGAGAATCACCCATCCAAATCCAT 59.831 41.667 0.00 0.00 37.82 3.41
393 394 4.220724 AGAATCACCCATCCAAATCCATG 58.779 43.478 0.00 0.00 0.00 3.66
394 395 3.693526 ATCACCCATCCAAATCCATGT 57.306 42.857 0.00 0.00 0.00 3.21
395 396 3.471430 TCACCCATCCAAATCCATGTT 57.529 42.857 0.00 0.00 0.00 2.71
396 397 4.599720 TCACCCATCCAAATCCATGTTA 57.400 40.909 0.00 0.00 0.00 2.41
397 398 4.535781 TCACCCATCCAAATCCATGTTAG 58.464 43.478 0.00 0.00 0.00 2.34
398 399 4.017591 TCACCCATCCAAATCCATGTTAGT 60.018 41.667 0.00 0.00 0.00 2.24
399 400 4.711355 CACCCATCCAAATCCATGTTAGTT 59.289 41.667 0.00 0.00 0.00 2.24
400 401 4.711355 ACCCATCCAAATCCATGTTAGTTG 59.289 41.667 0.00 0.00 0.00 3.16
401 402 4.099881 CCCATCCAAATCCATGTTAGTTGG 59.900 45.833 14.94 14.94 40.12 3.77
402 403 4.441913 CCATCCAAATCCATGTTAGTTGGC 60.442 45.833 15.85 0.00 38.89 4.52
403 404 3.772387 TCCAAATCCATGTTAGTTGGCA 58.228 40.909 15.85 6.27 38.89 4.92
404 405 3.509575 TCCAAATCCATGTTAGTTGGCAC 59.490 43.478 15.85 0.00 38.89 5.01
405 406 3.511146 CCAAATCCATGTTAGTTGGCACT 59.489 43.478 10.45 0.00 32.90 4.40
406 407 4.704540 CCAAATCCATGTTAGTTGGCACTA 59.295 41.667 10.45 0.00 32.90 2.74
407 408 5.163622 CCAAATCCATGTTAGTTGGCACTAG 60.164 44.000 10.45 0.00 36.81 2.57
408 409 2.985896 TCCATGTTAGTTGGCACTAGC 58.014 47.619 0.00 0.00 36.81 3.42
409 410 2.304470 TCCATGTTAGTTGGCACTAGCA 59.696 45.455 12.97 12.97 46.98 3.49
410 411 2.679837 CCATGTTAGTTGGCACTAGCAG 59.320 50.000 14.83 9.48 46.37 4.24
411 412 1.808411 TGTTAGTTGGCACTAGCAGC 58.192 50.000 8.67 0.00 40.66 5.25
412 413 0.721718 GTTAGTTGGCACTAGCAGCG 59.278 55.000 0.00 0.00 44.61 5.18
413 414 0.391130 TTAGTTGGCACTAGCAGCGG 60.391 55.000 0.00 0.00 44.61 5.52
414 415 1.541310 TAGTTGGCACTAGCAGCGGT 61.541 55.000 0.00 0.00 44.61 5.68
415 416 1.079405 GTTGGCACTAGCAGCGGTA 60.079 57.895 0.00 0.00 44.61 4.02
416 417 0.672401 GTTGGCACTAGCAGCGGTAA 60.672 55.000 0.00 0.00 44.61 2.85
417 418 0.672401 TTGGCACTAGCAGCGGTAAC 60.672 55.000 0.00 0.00 44.61 2.50
418 419 1.218316 GGCACTAGCAGCGGTAACT 59.782 57.895 2.13 0.00 44.61 2.24
419 420 0.458669 GGCACTAGCAGCGGTAACTA 59.541 55.000 2.13 0.00 44.61 2.24
420 421 1.536284 GGCACTAGCAGCGGTAACTAG 60.536 57.143 17.63 17.63 44.61 2.57
421 422 1.841450 CACTAGCAGCGGTAACTAGC 58.159 55.000 18.64 4.99 37.50 3.42
423 424 0.317938 CTAGCAGCGGTAACTAGCGG 60.318 60.000 10.05 0.00 46.21 5.52
424 425 1.731433 TAGCAGCGGTAACTAGCGGG 61.731 60.000 10.05 0.00 46.21 6.13
425 426 2.106332 CAGCGGTAACTAGCGGGG 59.894 66.667 10.05 0.00 46.21 5.73
426 427 2.043652 AGCGGTAACTAGCGGGGA 60.044 61.111 10.05 0.00 46.21 4.81
427 428 2.125961 AGCGGTAACTAGCGGGGAG 61.126 63.158 10.05 0.00 46.21 4.30
428 429 2.123428 GCGGTAACTAGCGGGGAGA 61.123 63.158 10.05 0.00 46.21 3.71
429 430 2.031360 CGGTAACTAGCGGGGAGAG 58.969 63.158 0.44 0.00 42.83 3.20
430 431 0.465097 CGGTAACTAGCGGGGAGAGA 60.465 60.000 0.44 0.00 42.83 3.10
431 432 1.320507 GGTAACTAGCGGGGAGAGAG 58.679 60.000 0.00 0.00 0.00 3.20
432 433 1.133853 GGTAACTAGCGGGGAGAGAGA 60.134 57.143 0.00 0.00 0.00 3.10
433 434 2.223745 GTAACTAGCGGGGAGAGAGAG 58.776 57.143 0.00 0.00 0.00 3.20
434 435 0.920438 AACTAGCGGGGAGAGAGAGA 59.080 55.000 0.00 0.00 0.00 3.10
435 436 0.472471 ACTAGCGGGGAGAGAGAGAG 59.528 60.000 0.00 0.00 0.00 3.20
436 437 0.762418 CTAGCGGGGAGAGAGAGAGA 59.238 60.000 0.00 0.00 0.00 3.10
437 438 0.762418 TAGCGGGGAGAGAGAGAGAG 59.238 60.000 0.00 0.00 0.00 3.20
438 439 0.986019 AGCGGGGAGAGAGAGAGAGA 60.986 60.000 0.00 0.00 0.00 3.10
439 440 0.535102 GCGGGGAGAGAGAGAGAGAG 60.535 65.000 0.00 0.00 0.00 3.20
440 441 1.128200 CGGGGAGAGAGAGAGAGAGA 58.872 60.000 0.00 0.00 0.00 3.10
441 442 1.070758 CGGGGAGAGAGAGAGAGAGAG 59.929 61.905 0.00 0.00 0.00 3.20
442 443 2.127708 GGGGAGAGAGAGAGAGAGAGT 58.872 57.143 0.00 0.00 0.00 3.24
443 444 2.158755 GGGGAGAGAGAGAGAGAGAGTG 60.159 59.091 0.00 0.00 0.00 3.51
444 445 2.505819 GGGAGAGAGAGAGAGAGAGTGT 59.494 54.545 0.00 0.00 0.00 3.55
445 446 3.535561 GGAGAGAGAGAGAGAGAGTGTG 58.464 54.545 0.00 0.00 0.00 3.82
446 447 3.055094 GGAGAGAGAGAGAGAGAGTGTGT 60.055 52.174 0.00 0.00 0.00 3.72
472 473 4.645921 AAACGCAAAGCCAGCCGC 62.646 61.111 0.00 0.00 37.98 6.53
483 484 4.688419 CAGCCGCGGTGTGCTTTG 62.688 66.667 28.70 10.00 43.27 2.77
496 497 1.059098 TGCTTTGCTGGAGAGGAGAA 58.941 50.000 0.00 0.00 0.00 2.87
503 504 2.028996 GCTGGAGAGGAGAAGAGGAGG 61.029 61.905 0.00 0.00 0.00 4.30
505 506 0.105709 GGAGAGGAGAAGAGGAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
508 509 0.930726 GAGGAGAAGAGGAGGGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
650 669 3.812019 CGTCGTCCGGTGGAGAGG 61.812 72.222 0.00 0.00 29.39 3.69
651 670 2.360852 GTCGTCCGGTGGAGAGGA 60.361 66.667 0.00 0.00 29.39 3.71
652 671 2.045242 TCGTCCGGTGGAGAGGAG 60.045 66.667 0.00 0.00 37.18 3.69
701 720 1.327764 CGCCTTAGAAATCTCGCAACC 59.672 52.381 0.00 0.00 0.00 3.77
744 768 3.000222 CGGCTCTTTTTCTTTTTGTGCAC 60.000 43.478 10.75 10.75 0.00 4.57
784 808 6.102762 TCCCTAATTAAGATTCCCCTTTCTCC 59.897 42.308 0.00 0.00 0.00 3.71
802 840 3.782918 CCCCCTCCTCTCTCCTCT 58.217 66.667 0.00 0.00 0.00 3.69
810 849 0.257616 CCTCTCTCCTCTTCCTCCGT 59.742 60.000 0.00 0.00 0.00 4.69
871 910 1.757340 GGCCGGGAGTACACTAGCT 60.757 63.158 2.18 0.00 0.00 3.32
873 912 0.667453 GCCGGGAGTACACTAGCTAC 59.333 60.000 2.18 0.00 0.00 3.58
878 917 1.682323 GGAGTACACTAGCTACCAGGC 59.318 57.143 0.00 0.00 0.00 4.85
881 920 2.100989 GTACACTAGCTACCAGGCAGT 58.899 52.381 0.00 0.00 34.17 4.40
893 932 1.115467 CAGGCAGTAGTACCAGGAGG 58.885 60.000 0.00 0.00 42.21 4.30
894 933 1.008403 AGGCAGTAGTACCAGGAGGA 58.992 55.000 0.00 0.00 38.69 3.71
895 934 1.063567 AGGCAGTAGTACCAGGAGGAG 60.064 57.143 0.00 0.00 38.69 3.69
896 935 1.342175 GGCAGTAGTACCAGGAGGAGT 60.342 57.143 0.00 0.00 38.69 3.85
897 936 2.458620 GCAGTAGTACCAGGAGGAGTT 58.541 52.381 0.00 0.00 38.69 3.01
898 937 2.166664 GCAGTAGTACCAGGAGGAGTTG 59.833 54.545 0.00 0.00 38.69 3.16
899 938 2.761208 CAGTAGTACCAGGAGGAGTTGG 59.239 54.545 0.00 0.00 40.38 3.77
1091 1173 2.783241 TTCCGCGCCGTCATGGTAAA 62.783 55.000 0.00 0.00 41.21 2.01
1100 1185 0.746923 GTCATGGTAAAGCCCGTCCC 60.747 60.000 0.00 0.00 36.04 4.46
1168 1259 4.179579 GCGCCCGCTGTTGATTCC 62.180 66.667 5.27 0.00 38.26 3.01
1171 1262 1.675641 GCCCGCTGTTGATTCCAGT 60.676 57.895 0.00 0.00 32.41 4.00
1226 1317 1.588139 CGGGACTACCAATCGCGTC 60.588 63.158 5.77 0.00 44.73 5.19
1234 1325 2.202610 CAATCGCGTCGCTCCTCA 60.203 61.111 16.36 0.00 0.00 3.86
1236 1327 3.417275 AATCGCGTCGCTCCTCAGG 62.417 63.158 16.36 0.00 0.00 3.86
1244 1335 0.820226 TCGCTCCTCAGGTTGATCTG 59.180 55.000 0.00 0.00 36.17 2.90
1252 1347 2.425312 CTCAGGTTGATCTGCGAGTACT 59.575 50.000 0.00 0.00 34.91 2.73
1253 1348 3.617284 TCAGGTTGATCTGCGAGTACTA 58.383 45.455 0.00 0.00 34.91 1.82
1254 1349 3.377485 TCAGGTTGATCTGCGAGTACTAC 59.623 47.826 0.00 0.00 34.91 2.73
1255 1350 3.378742 CAGGTTGATCTGCGAGTACTACT 59.621 47.826 0.00 0.00 0.00 2.57
1256 1351 4.575236 CAGGTTGATCTGCGAGTACTACTA 59.425 45.833 0.00 0.00 0.00 1.82
1257 1352 4.817464 AGGTTGATCTGCGAGTACTACTAG 59.183 45.833 0.00 0.00 0.00 2.57
1258 1353 4.815308 GGTTGATCTGCGAGTACTACTAGA 59.185 45.833 0.00 0.00 0.00 2.43
1259 1354 5.049954 GGTTGATCTGCGAGTACTACTAGAG 60.050 48.000 0.00 0.00 0.00 2.43
1260 1355 5.279255 TGATCTGCGAGTACTACTAGAGT 57.721 43.478 0.00 0.00 42.69 3.24
1261 1356 6.402456 TGATCTGCGAGTACTACTAGAGTA 57.598 41.667 0.00 0.00 39.81 2.59
1283 1378 9.311916 GAGTATATTTAGCTAGATCAAGCCATG 57.688 37.037 0.00 0.00 43.86 3.66
1369 1483 3.362706 TGACCTAACCTAGCCACTACTG 58.637 50.000 0.00 0.00 0.00 2.74
1373 1487 0.905357 AACCTAGCCACTACTGCTGG 59.095 55.000 0.00 0.00 39.91 4.85
1426 1540 1.532868 GCGTGATCTGGCCATTATGAC 59.467 52.381 5.51 6.83 0.00 3.06
1429 1543 3.062763 GTGATCTGGCCATTATGACGAG 58.937 50.000 5.51 0.00 0.00 4.18
1437 1551 1.308998 CATTATGACGAGCCCCCAAC 58.691 55.000 0.00 0.00 0.00 3.77
1506 1670 1.468520 GAATTGGACCACCATGTCACG 59.531 52.381 0.00 0.00 46.34 4.35
1548 1715 2.819608 GGCAACTTCTCACTGGCAATTA 59.180 45.455 0.00 0.00 35.79 1.40
1550 1717 3.503748 GCAACTTCTCACTGGCAATTACT 59.496 43.478 0.00 0.00 0.00 2.24
1560 1727 6.173339 TCACTGGCAATTACTTCTTTCTAGG 58.827 40.000 0.00 0.00 0.00 3.02
1561 1728 6.013725 TCACTGGCAATTACTTCTTTCTAGGA 60.014 38.462 0.00 0.00 0.00 2.94
1562 1729 6.655003 CACTGGCAATTACTTCTTTCTAGGAA 59.345 38.462 0.00 0.00 0.00 3.36
1564 1731 7.175119 ACTGGCAATTACTTCTTTCTAGGAAAC 59.825 37.037 0.00 0.00 0.00 2.78
1606 1784 2.223479 CCTTTCTGGTTGGTGTTTCACG 60.223 50.000 0.00 0.00 34.83 4.35
1659 1843 0.673333 TACTGCAGCATGGTGTTCCG 60.673 55.000 24.73 13.33 35.86 4.30
1674 1858 0.183971 TTCCGTTTCTCCAAGGGCAA 59.816 50.000 0.00 0.00 39.89 4.52
1677 1861 0.875059 CGTTTCTCCAAGGGCAAGTC 59.125 55.000 0.00 0.00 0.00 3.01
1678 1862 1.248486 GTTTCTCCAAGGGCAAGTCC 58.752 55.000 0.00 0.00 0.00 3.85
1705 1889 0.537143 AAATGCCAGCGAACCTGTCA 60.537 50.000 0.00 0.00 40.06 3.58
1707 1891 0.322816 ATGCCAGCGAACCTGTCATT 60.323 50.000 0.00 0.00 36.82 2.57
1709 1893 0.955428 GCCAGCGAACCTGTCATTCA 60.955 55.000 0.00 0.00 40.06 2.57
1710 1894 1.081892 CCAGCGAACCTGTCATTCAG 58.918 55.000 0.00 0.00 40.06 3.02
1719 1903 2.693797 CTGTCATTCAGGCAACACAC 57.306 50.000 0.00 0.00 40.23 3.82
1722 1906 3.814625 TGTCATTCAGGCAACACACTTA 58.185 40.909 0.00 0.00 41.41 2.24
1723 1907 3.563808 TGTCATTCAGGCAACACACTTAC 59.436 43.478 0.00 0.00 41.41 2.34
1731 1944 1.602377 GCAACACACTTACACTCCACC 59.398 52.381 0.00 0.00 0.00 4.61
1734 1947 1.834896 ACACACTTACACTCCACCACA 59.165 47.619 0.00 0.00 0.00 4.17
1743 1956 0.772124 ACTCCACCACAGGGGAATGT 60.772 55.000 0.00 0.00 41.15 2.71
1745 1958 0.988832 TCCACCACAGGGGAATGTAC 59.011 55.000 0.00 0.00 41.15 2.90
1762 1975 3.404899 TGTACCGAACCTGTGAAAATCC 58.595 45.455 0.00 0.00 0.00 3.01
1769 1985 1.608590 ACCTGTGAAAATCCGCAACAG 59.391 47.619 0.00 0.00 0.00 3.16
1786 2002 1.134965 ACAGCGACTATCTGCACTTCC 60.135 52.381 0.00 0.00 35.04 3.46
1788 2004 1.827969 AGCGACTATCTGCACTTCCTT 59.172 47.619 0.00 0.00 0.00 3.36
1791 2007 3.437049 GCGACTATCTGCACTTCCTTTTT 59.563 43.478 0.00 0.00 0.00 1.94
1792 2008 4.436183 GCGACTATCTGCACTTCCTTTTTC 60.436 45.833 0.00 0.00 0.00 2.29
1794 2010 5.409826 CGACTATCTGCACTTCCTTTTTCTT 59.590 40.000 0.00 0.00 0.00 2.52
1825 2041 0.034670 ATGCTCAGGGTTTCAGGCTC 60.035 55.000 0.00 0.00 0.00 4.70
1833 2049 2.110721 AGGGTTTCAGGCTCATTTCCTT 59.889 45.455 0.00 0.00 0.00 3.36
1852 2068 1.373246 TGGTACAACCGCTACGTGC 60.373 57.895 0.00 0.00 42.58 5.34
1862 2078 0.650512 CGCTACGTGCATTTACTGGG 59.349 55.000 0.00 0.00 43.06 4.45
1891 2107 5.398603 ACGACTCTGATTGATCTGACTTT 57.601 39.130 0.00 0.00 32.42 2.66
1897 2113 9.376075 GACTCTGATTGATCTGACTTTTATTCA 57.624 33.333 0.00 0.00 32.42 2.57
1904 2120 7.439157 TGATCTGACTTTTATTCAACAGGTG 57.561 36.000 0.00 0.00 0.00 4.00
1981 2197 3.016736 CCATCGCCAAATCCAGTAAAGT 58.983 45.455 0.00 0.00 0.00 2.66
2122 2338 2.955614 ACGTATGGGTATTCATAGCGC 58.044 47.619 0.00 0.00 32.67 5.92
2125 2341 2.185004 ATGGGTATTCATAGCGCACC 57.815 50.000 11.47 6.17 0.00 5.01
2147 2363 6.376864 CACCACTGTGCTCTATATATCTAGCT 59.623 42.308 16.17 0.00 35.31 3.32
2195 2411 7.227314 CGATATGGATGTATGGATATTTGTGGG 59.773 40.741 0.00 0.00 0.00 4.61
2368 2585 0.875059 AGTTTTGCAGGTAAGCGAGC 59.125 50.000 0.00 0.00 37.31 5.03
2372 2589 1.544825 TTGCAGGTAAGCGAGCTCCT 61.545 55.000 8.47 3.35 37.31 3.69
2393 2610 4.506288 CCTTGCAACCGTTTCCTTTTTAAG 59.494 41.667 0.00 0.00 0.00 1.85
2410 2627 2.222227 AAGGATTTTCTGGGTGCTCC 57.778 50.000 0.00 0.00 0.00 4.70
2425 2642 3.594134 GTGCTCCTGTATATGATCCTGC 58.406 50.000 0.00 0.00 0.00 4.85
2576 2793 5.318630 TGGGGTAACTAATTCAACTTCACC 58.681 41.667 0.00 0.00 0.00 4.02
2592 2809 7.282450 TCAACTTCACCTTTTCTCTTTTCCTAC 59.718 37.037 0.00 0.00 0.00 3.18
2650 2867 5.221925 ACTGAAGACCCTGCAATCTCTTTAA 60.222 40.000 0.00 0.00 0.00 1.52
2868 3085 1.914108 ACTCCTTTAGGGGGCACTTAC 59.086 52.381 0.00 0.00 41.02 2.34
2874 3091 1.282382 TAGGGGGCACTTACCAAGAC 58.718 55.000 0.00 0.00 0.00 3.01
2903 3120 5.765510 TGGAAACAGGGTATGCTGATATTT 58.234 37.500 0.00 0.00 35.01 1.40
2960 3177 7.083875 TCAGAACAGTGTTTCCTTTTAACAG 57.916 36.000 10.45 0.00 36.27 3.16
3071 3288 6.156775 TGATCATTTAGACACATCTTCCCAGA 59.843 38.462 0.00 0.00 36.29 3.86
3099 3316 5.825593 TGATACCACTCTTCAGGAAACTT 57.174 39.130 0.00 0.00 40.21 2.66
3234 3451 6.098838 AGGTTCTTCTCTTTTCCATGCTTTTT 59.901 34.615 0.00 0.00 0.00 1.94
3264 3496 6.910995 TCTGTTTGCAGTCTAACTACTCTAC 58.089 40.000 1.05 0.00 43.05 2.59
3286 3518 4.828829 CGATAGTTGGAAGTAAACACCCT 58.171 43.478 0.00 0.00 0.00 4.34
3337 3569 9.872757 CTGAAATGAAATGAAACAAAATTCCAG 57.127 29.630 0.00 0.00 0.00 3.86
3371 3603 9.844257 ATATTTCTCTTTTCTGCAGCTAATAGT 57.156 29.630 9.47 0.00 0.00 2.12
3395 3627 6.165700 AGACTTCAAATGTTCATTTGCCTT 57.834 33.333 24.64 14.83 40.36 4.35
3397 3629 6.480981 AGACTTCAAATGTTCATTTGCCTTTG 59.519 34.615 24.64 16.69 40.36 2.77
3399 3631 6.258507 ACTTCAAATGTTCATTTGCCTTTGTC 59.741 34.615 24.64 0.00 40.36 3.18
3504 3745 9.062524 GTGGCTCCACATGTATATAAATTGTAA 57.937 33.333 13.81 0.00 45.53 2.41
3681 3922 7.927092 GGAGATAGTACCCAAGATAGAACAAAC 59.073 40.741 0.00 0.00 0.00 2.93
3783 4024 3.806521 GTGGTGATGAAGGATTGAGATCG 59.193 47.826 0.00 0.00 32.84 3.69
3963 4204 2.827322 TGATGAGGCAAAAATGTGGGAG 59.173 45.455 0.00 0.00 0.00 4.30
4026 4267 4.764172 AGAGGGAATGTTCTGAGAAATCG 58.236 43.478 0.00 0.00 0.00 3.34
4083 4324 1.153086 ACATGCTGAGCGGGATTCC 60.153 57.895 0.00 0.00 0.00 3.01
4431 4672 6.486657 TGAAGAATGGGTTGTTAGTCAAAGAG 59.513 38.462 0.00 0.00 37.81 2.85
4579 4820 9.889128 TTGAATTGGAGAAAGAAAATGAAACTT 57.111 25.926 0.00 0.00 0.00 2.66
4914 5155 3.142174 AGAGAAGTTCCGAAAAAGCCAG 58.858 45.455 0.00 0.00 0.00 4.85
5110 5351 1.154469 GACTTGCGGCGCTACAAAC 60.154 57.895 33.26 14.94 0.00 2.93
5541 5782 8.726068 CAAAGGGTTGAGTTTAAACAAAAACAT 58.274 29.630 20.06 10.99 40.97 2.71
5617 5858 9.761504 TGAGAAGATCTAATTCTAATCTGCAAG 57.238 33.333 0.00 0.00 37.14 4.01
5728 5969 4.503741 TTTATGCAACAAGAGCAGGAAC 57.496 40.909 0.00 0.00 46.36 3.62
5775 6016 7.262048 TCCTTGATTTTTGTAAAACAGTGGAC 58.738 34.615 0.00 0.00 31.88 4.02
6772 7013 9.012161 AGCAGGTTAGCTATATACAGTACTTAC 57.988 37.037 0.00 0.00 44.50 2.34
6880 7121 9.995003 GATTGGAGATTCTACAGATATTCAGTT 57.005 33.333 0.00 0.00 0.00 3.16
7215 7457 7.491696 GGAAATAGCTTCTACAATCTGTTACGT 59.508 37.037 0.00 0.00 34.17 3.57
7278 7520 4.478317 TCCTTCATATGAACTGGGACCATT 59.522 41.667 14.23 0.00 0.00 3.16
7406 7652 7.255590 CCTTGAAATCTGTTGATTACCACTGTT 60.256 37.037 0.00 0.00 41.62 3.16
7407 7653 7.202016 TGAAATCTGTTGATTACCACTGTTC 57.798 36.000 0.00 0.00 41.62 3.18
7435 7681 8.948145 TGGAAAATCATTTCATTTTATTGGCTG 58.052 29.630 3.97 0.00 45.53 4.85
7531 7777 1.765230 AGAGGACTCCCGTACATCAC 58.235 55.000 0.00 0.00 37.58 3.06
7856 8104 6.360370 ACATAAGACTGACAACACAGGTAT 57.640 37.500 0.00 0.00 41.59 2.73
7920 8168 2.820178 TGGGTAGAGCAACATCTCTCA 58.180 47.619 0.00 0.00 42.11 3.27
8090 8338 4.889409 ACAATACAAGCCATGACAATAGGG 59.111 41.667 0.00 0.00 0.00 3.53
8187 8435 0.968901 TACCGGTGGATTGCGAGTCT 60.969 55.000 19.93 0.00 0.00 3.24
8188 8436 1.519455 CCGGTGGATTGCGAGTCTC 60.519 63.158 0.00 0.00 0.00 3.36
8474 8727 6.682423 CATGATTACATGCAAAGTCCACTA 57.318 37.500 0.00 0.00 45.51 2.74
8671 8924 5.605534 CTTTTGTGGGATATCATCGAGTCT 58.394 41.667 4.83 0.00 0.00 3.24
8769 9022 3.079578 CAAGACAAGCATCAGGTGTCAT 58.920 45.455 5.88 0.00 32.46 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.543231 TCTTCTAGGAAGTAGTTCAATCCTTAA 57.457 33.333 12.31 0.00 42.24 1.85
25 26 9.543231 TTCTTCTAGGAAGTAGTTCAATCCTTA 57.457 33.333 12.31 0.00 42.24 2.69
26 27 8.437274 TTCTTCTAGGAAGTAGTTCAATCCTT 57.563 34.615 12.31 0.00 42.24 3.36
27 28 8.616799 ATTCTTCTAGGAAGTAGTTCAATCCT 57.383 34.615 12.31 3.41 44.34 3.24
28 29 9.674068 AAATTCTTCTAGGAAGTAGTTCAATCC 57.326 33.333 12.31 0.00 33.93 3.01
35 36 9.825109 GCATCTAAAATTCTTCTAGGAAGTAGT 57.175 33.333 7.09 0.00 0.00 2.73
37 38 9.823647 CAGCATCTAAAATTCTTCTAGGAAGTA 57.176 33.333 7.09 0.00 0.00 2.24
38 39 7.281999 GCAGCATCTAAAATTCTTCTAGGAAGT 59.718 37.037 7.09 0.00 0.00 3.01
39 40 7.498570 AGCAGCATCTAAAATTCTTCTAGGAAG 59.501 37.037 0.00 1.28 0.00 3.46
40 41 7.341805 AGCAGCATCTAAAATTCTTCTAGGAA 58.658 34.615 0.00 0.00 0.00 3.36
41 42 6.893583 AGCAGCATCTAAAATTCTTCTAGGA 58.106 36.000 0.00 0.00 0.00 2.94
42 43 8.845413 ATAGCAGCATCTAAAATTCTTCTAGG 57.155 34.615 0.00 0.00 0.00 3.02
69 70 9.638176 ATGAATCCTTACAATTTTAGATGCTCT 57.362 29.630 0.00 0.00 0.00 4.09
72 73 9.599322 CGTATGAATCCTTACAATTTTAGATGC 57.401 33.333 0.00 0.00 0.00 3.91
108 109 8.033626 GGAGCAAATTCAAGAATCTCATTTCTT 58.966 33.333 10.35 0.00 44.71 2.52
109 110 7.177921 TGGAGCAAATTCAAGAATCTCATTTCT 59.822 33.333 10.35 0.00 37.56 2.52
110 111 7.275123 GTGGAGCAAATTCAAGAATCTCATTTC 59.725 37.037 10.35 0.00 0.00 2.17
111 112 7.039223 AGTGGAGCAAATTCAAGAATCTCATTT 60.039 33.333 10.35 0.00 0.00 2.32
112 113 6.436532 AGTGGAGCAAATTCAAGAATCTCATT 59.563 34.615 10.35 0.00 0.00 2.57
113 114 5.950549 AGTGGAGCAAATTCAAGAATCTCAT 59.049 36.000 10.35 0.00 0.00 2.90
114 115 5.319453 AGTGGAGCAAATTCAAGAATCTCA 58.681 37.500 10.35 0.00 0.00 3.27
115 116 5.893897 AGTGGAGCAAATTCAAGAATCTC 57.106 39.130 0.00 0.00 0.00 2.75
116 117 6.716628 TGTAAGTGGAGCAAATTCAAGAATCT 59.283 34.615 0.00 0.00 0.00 2.40
117 118 6.913170 TGTAAGTGGAGCAAATTCAAGAATC 58.087 36.000 0.00 0.00 0.00 2.52
118 119 6.716628 TCTGTAAGTGGAGCAAATTCAAGAAT 59.283 34.615 0.00 0.00 33.76 2.40
119 120 6.061441 TCTGTAAGTGGAGCAAATTCAAGAA 58.939 36.000 0.00 0.00 33.76 2.52
120 121 5.620206 TCTGTAAGTGGAGCAAATTCAAGA 58.380 37.500 0.00 0.00 33.76 3.02
121 122 5.947228 TCTGTAAGTGGAGCAAATTCAAG 57.053 39.130 0.00 0.00 33.76 3.02
122 123 5.183713 CCATCTGTAAGTGGAGCAAATTCAA 59.816 40.000 0.00 0.00 37.32 2.69
123 124 4.701651 CCATCTGTAAGTGGAGCAAATTCA 59.298 41.667 0.00 0.00 37.32 2.57
124 125 4.439289 GCCATCTGTAAGTGGAGCAAATTC 60.439 45.833 0.00 0.00 37.32 2.17
125 126 3.445096 GCCATCTGTAAGTGGAGCAAATT 59.555 43.478 0.00 0.00 37.32 1.82
126 127 3.019564 GCCATCTGTAAGTGGAGCAAAT 58.980 45.455 0.00 0.00 37.32 2.32
127 128 2.436417 GCCATCTGTAAGTGGAGCAAA 58.564 47.619 0.00 0.00 37.32 3.68
128 129 1.340017 GGCCATCTGTAAGTGGAGCAA 60.340 52.381 0.00 0.00 37.32 3.91
129 130 0.253044 GGCCATCTGTAAGTGGAGCA 59.747 55.000 0.00 0.00 37.32 4.26
130 131 0.543749 AGGCCATCTGTAAGTGGAGC 59.456 55.000 5.01 0.00 37.32 4.70
131 132 3.356529 AAAGGCCATCTGTAAGTGGAG 57.643 47.619 5.01 0.00 37.32 3.86
132 133 3.806949 AAAAGGCCATCTGTAAGTGGA 57.193 42.857 5.01 0.00 37.32 4.02
133 134 5.975693 TTTAAAAGGCCATCTGTAAGTGG 57.024 39.130 5.01 0.00 37.92 4.00
134 135 5.863935 GCTTTTAAAAGGCCATCTGTAAGTG 59.136 40.000 25.40 0.16 36.53 3.16
135 136 5.335661 CGCTTTTAAAAGGCCATCTGTAAGT 60.336 40.000 25.40 0.00 36.53 2.24
136 137 5.095490 CGCTTTTAAAAGGCCATCTGTAAG 58.905 41.667 25.40 2.80 36.53 2.34
137 138 4.082463 CCGCTTTTAAAAGGCCATCTGTAA 60.082 41.667 25.40 0.00 36.53 2.41
138 139 3.442273 CCGCTTTTAAAAGGCCATCTGTA 59.558 43.478 25.40 0.00 36.53 2.74
139 140 2.231235 CCGCTTTTAAAAGGCCATCTGT 59.769 45.455 25.40 0.00 36.53 3.41
140 141 2.491693 TCCGCTTTTAAAAGGCCATCTG 59.508 45.455 25.40 8.35 36.53 2.90
141 142 2.492088 GTCCGCTTTTAAAAGGCCATCT 59.508 45.455 25.40 0.00 36.53 2.90
142 143 2.731027 CGTCCGCTTTTAAAAGGCCATC 60.731 50.000 25.40 10.36 36.53 3.51
143 144 1.201414 CGTCCGCTTTTAAAAGGCCAT 59.799 47.619 25.40 0.00 36.53 4.40
144 145 0.594110 CGTCCGCTTTTAAAAGGCCA 59.406 50.000 25.40 7.14 36.53 5.36
145 146 0.594602 ACGTCCGCTTTTAAAAGGCC 59.405 50.000 25.40 11.61 36.53 5.19
146 147 1.723701 CGACGTCCGCTTTTAAAAGGC 60.724 52.381 25.40 17.39 36.53 4.35
147 148 1.136169 CCGACGTCCGCTTTTAAAAGG 60.136 52.381 25.40 16.45 36.53 3.11
148 149 1.794116 TCCGACGTCCGCTTTTAAAAG 59.206 47.619 21.32 21.32 39.03 2.27
149 150 1.863267 TCCGACGTCCGCTTTTAAAA 58.137 45.000 10.58 0.00 36.84 1.52
150 151 2.083167 ATCCGACGTCCGCTTTTAAA 57.917 45.000 10.58 0.00 36.84 1.52
151 152 2.937469 TATCCGACGTCCGCTTTTAA 57.063 45.000 10.58 0.00 36.84 1.52
152 153 2.734670 CATATCCGACGTCCGCTTTTA 58.265 47.619 10.58 0.00 36.84 1.52
153 154 1.567504 CATATCCGACGTCCGCTTTT 58.432 50.000 10.58 0.00 36.84 2.27
154 155 0.874607 GCATATCCGACGTCCGCTTT 60.875 55.000 10.58 0.00 36.84 3.51
155 156 1.299926 GCATATCCGACGTCCGCTT 60.300 57.895 10.58 0.00 36.84 4.68
156 157 2.011741 TTGCATATCCGACGTCCGCT 62.012 55.000 10.58 0.00 36.84 5.52
157 158 1.548973 CTTGCATATCCGACGTCCGC 61.549 60.000 10.58 4.04 36.84 5.54
158 159 1.548973 GCTTGCATATCCGACGTCCG 61.549 60.000 10.58 3.37 38.18 4.79
159 160 0.529773 TGCTTGCATATCCGACGTCC 60.530 55.000 10.58 0.00 0.00 4.79
160 161 1.193203 CATGCTTGCATATCCGACGTC 59.807 52.381 5.18 5.18 0.00 4.34
161 162 1.220529 CATGCTTGCATATCCGACGT 58.779 50.000 7.84 0.00 0.00 4.34
162 163 0.514255 CCATGCTTGCATATCCGACG 59.486 55.000 7.84 0.00 0.00 5.12
163 164 0.239347 GCCATGCTTGCATATCCGAC 59.761 55.000 7.84 0.00 0.00 4.79
164 165 0.179023 TGCCATGCTTGCATATCCGA 60.179 50.000 7.84 0.00 32.85 4.55
165 166 2.333291 TGCCATGCTTGCATATCCG 58.667 52.632 7.84 0.00 32.85 4.18
171 172 1.270199 ACGAAAAATGCCATGCTTGCA 60.270 42.857 0.00 0.00 43.97 4.08
172 173 1.127213 CACGAAAAATGCCATGCTTGC 59.873 47.619 0.00 0.00 0.00 4.01
173 174 1.727880 CCACGAAAAATGCCATGCTTG 59.272 47.619 0.00 0.00 0.00 4.01
174 175 1.940752 GCCACGAAAAATGCCATGCTT 60.941 47.619 0.00 0.00 0.00 3.91
175 176 0.390209 GCCACGAAAAATGCCATGCT 60.390 50.000 0.00 0.00 0.00 3.79
176 177 0.669932 TGCCACGAAAAATGCCATGC 60.670 50.000 0.00 0.00 0.00 4.06
177 178 1.793258 TTGCCACGAAAAATGCCATG 58.207 45.000 0.00 0.00 0.00 3.66
178 179 2.766345 ATTGCCACGAAAAATGCCAT 57.234 40.000 0.00 0.00 0.00 4.40
179 180 2.540265 AATTGCCACGAAAAATGCCA 57.460 40.000 0.00 0.00 0.00 4.92
180 181 6.843069 ATATAAATTGCCACGAAAAATGCC 57.157 33.333 0.00 0.00 0.00 4.40
181 182 7.125113 CCAATATAAATTGCCACGAAAAATGC 58.875 34.615 0.00 0.00 41.06 3.56
182 183 7.125113 GCCAATATAAATTGCCACGAAAAATG 58.875 34.615 0.00 0.00 41.06 2.32
183 184 6.019156 CGCCAATATAAATTGCCACGAAAAAT 60.019 34.615 0.00 0.00 41.06 1.82
184 185 5.289675 CGCCAATATAAATTGCCACGAAAAA 59.710 36.000 0.00 0.00 41.06 1.94
185 186 4.800993 CGCCAATATAAATTGCCACGAAAA 59.199 37.500 0.00 0.00 41.06 2.29
186 187 4.142359 ACGCCAATATAAATTGCCACGAAA 60.142 37.500 0.00 0.00 41.06 3.46
187 188 3.378742 ACGCCAATATAAATTGCCACGAA 59.621 39.130 0.00 0.00 41.06 3.85
188 189 2.946329 ACGCCAATATAAATTGCCACGA 59.054 40.909 0.00 0.00 41.06 4.35
189 190 3.042189 CACGCCAATATAAATTGCCACG 58.958 45.455 0.00 0.00 41.06 4.94
190 191 4.300189 TCACGCCAATATAAATTGCCAC 57.700 40.909 0.00 0.00 41.06 5.01
191 192 4.582240 TCATCACGCCAATATAAATTGCCA 59.418 37.500 0.00 0.00 41.06 4.92
192 193 5.119931 TCATCACGCCAATATAAATTGCC 57.880 39.130 0.00 0.00 41.06 4.52
193 194 5.574055 CCATCATCACGCCAATATAAATTGC 59.426 40.000 0.00 0.00 41.06 3.56
194 195 5.574055 GCCATCATCACGCCAATATAAATTG 59.426 40.000 0.00 0.00 41.90 2.32
195 196 5.619757 CGCCATCATCACGCCAATATAAATT 60.620 40.000 0.00 0.00 0.00 1.82
196 197 4.142622 CGCCATCATCACGCCAATATAAAT 60.143 41.667 0.00 0.00 0.00 1.40
197 198 3.188254 CGCCATCATCACGCCAATATAAA 59.812 43.478 0.00 0.00 0.00 1.40
198 199 2.741517 CGCCATCATCACGCCAATATAA 59.258 45.455 0.00 0.00 0.00 0.98
199 200 2.028567 TCGCCATCATCACGCCAATATA 60.029 45.455 0.00 0.00 0.00 0.86
200 201 1.159285 CGCCATCATCACGCCAATAT 58.841 50.000 0.00 0.00 0.00 1.28
201 202 0.105778 TCGCCATCATCACGCCAATA 59.894 50.000 0.00 0.00 0.00 1.90
202 203 0.747644 TTCGCCATCATCACGCCAAT 60.748 50.000 0.00 0.00 0.00 3.16
203 204 0.747644 ATTCGCCATCATCACGCCAA 60.748 50.000 0.00 0.00 0.00 4.52
204 205 0.747644 AATTCGCCATCATCACGCCA 60.748 50.000 0.00 0.00 0.00 5.69
205 206 0.381801 AAATTCGCCATCATCACGCC 59.618 50.000 0.00 0.00 0.00 5.68
206 207 2.287915 ACTAAATTCGCCATCATCACGC 59.712 45.455 0.00 0.00 0.00 5.34
207 208 4.536364 AACTAAATTCGCCATCATCACG 57.464 40.909 0.00 0.00 0.00 4.35
208 209 4.500477 GCAAACTAAATTCGCCATCATCAC 59.500 41.667 0.00 0.00 0.00 3.06
209 210 4.157472 TGCAAACTAAATTCGCCATCATCA 59.843 37.500 0.00 0.00 0.00 3.07
210 211 4.671377 TGCAAACTAAATTCGCCATCATC 58.329 39.130 0.00 0.00 0.00 2.92
211 212 4.717233 TGCAAACTAAATTCGCCATCAT 57.283 36.364 0.00 0.00 0.00 2.45
212 213 4.484236 CTTGCAAACTAAATTCGCCATCA 58.516 39.130 0.00 0.00 0.00 3.07
213 214 3.304293 GCTTGCAAACTAAATTCGCCATC 59.696 43.478 0.00 0.00 0.00 3.51
214 215 3.253230 GCTTGCAAACTAAATTCGCCAT 58.747 40.909 0.00 0.00 0.00 4.40
215 216 2.035193 TGCTTGCAAACTAAATTCGCCA 59.965 40.909 0.00 0.00 0.00 5.69
216 217 2.408368 GTGCTTGCAAACTAAATTCGCC 59.592 45.455 0.00 0.00 0.00 5.54
217 218 2.088969 CGTGCTTGCAAACTAAATTCGC 59.911 45.455 0.00 0.00 0.00 4.70
218 219 2.656422 CCGTGCTTGCAAACTAAATTCG 59.344 45.455 0.00 0.00 0.00 3.34
219 220 2.986479 CCCGTGCTTGCAAACTAAATTC 59.014 45.455 0.00 0.00 0.00 2.17
220 221 2.625790 TCCCGTGCTTGCAAACTAAATT 59.374 40.909 0.00 0.00 0.00 1.82
221 222 2.235016 TCCCGTGCTTGCAAACTAAAT 58.765 42.857 0.00 0.00 0.00 1.40
222 223 1.681538 TCCCGTGCTTGCAAACTAAA 58.318 45.000 0.00 0.00 0.00 1.85
223 224 1.681538 TTCCCGTGCTTGCAAACTAA 58.318 45.000 0.00 0.00 0.00 2.24
224 225 1.904287 ATTCCCGTGCTTGCAAACTA 58.096 45.000 0.00 0.00 0.00 2.24
225 226 1.000274 GAATTCCCGTGCTTGCAAACT 60.000 47.619 0.00 0.00 0.00 2.66
226 227 1.000274 AGAATTCCCGTGCTTGCAAAC 60.000 47.619 0.00 0.00 0.00 2.93
227 228 1.269448 GAGAATTCCCGTGCTTGCAAA 59.731 47.619 0.00 0.00 0.00 3.68
228 229 0.881118 GAGAATTCCCGTGCTTGCAA 59.119 50.000 0.65 0.00 0.00 4.08
229 230 0.960364 GGAGAATTCCCGTGCTTGCA 60.960 55.000 0.65 0.00 37.53 4.08
230 231 1.803289 GGAGAATTCCCGTGCTTGC 59.197 57.895 0.65 0.00 37.53 4.01
231 232 0.391130 TCGGAGAATTCCCGTGCTTG 60.391 55.000 25.08 6.26 46.53 4.01
232 233 0.391263 GTCGGAGAATTCCCGTGCTT 60.391 55.000 25.08 0.00 46.53 3.91
233 234 1.218316 GTCGGAGAATTCCCGTGCT 59.782 57.895 25.08 0.00 46.53 4.40
234 235 0.672401 TTGTCGGAGAATTCCCGTGC 60.672 55.000 25.08 20.53 46.53 5.34
235 236 1.803334 TTTGTCGGAGAATTCCCGTG 58.197 50.000 25.08 6.72 46.53 4.94
236 237 2.423577 CTTTTGTCGGAGAATTCCCGT 58.576 47.619 25.08 0.88 46.53 5.28
238 239 3.067684 TCCTTTTGTCGGAGAATTCCC 57.932 47.619 0.65 2.39 40.67 3.97
239 240 3.190744 GGTTCCTTTTGTCGGAGAATTCC 59.809 47.826 0.65 0.00 39.69 3.01
240 241 3.120304 CGGTTCCTTTTGTCGGAGAATTC 60.120 47.826 0.00 0.00 39.69 2.17
241 242 2.812011 CGGTTCCTTTTGTCGGAGAATT 59.188 45.455 0.00 0.00 39.69 2.17
242 243 2.038033 TCGGTTCCTTTTGTCGGAGAAT 59.962 45.455 0.00 0.00 39.69 2.40
243 244 1.413445 TCGGTTCCTTTTGTCGGAGAA 59.587 47.619 0.00 0.00 39.69 2.87
244 245 1.000506 CTCGGTTCCTTTTGTCGGAGA 59.999 52.381 0.00 0.00 31.88 3.71
245 246 1.429463 CTCGGTTCCTTTTGTCGGAG 58.571 55.000 0.00 0.00 0.00 4.63
246 247 0.034337 CCTCGGTTCCTTTTGTCGGA 59.966 55.000 0.00 0.00 0.00 4.55
247 248 1.574702 GCCTCGGTTCCTTTTGTCGG 61.575 60.000 0.00 0.00 0.00 4.79
248 249 0.882927 TGCCTCGGTTCCTTTTGTCG 60.883 55.000 0.00 0.00 0.00 4.35
249 250 0.875059 CTGCCTCGGTTCCTTTTGTC 59.125 55.000 0.00 0.00 0.00 3.18
250 251 0.472471 TCTGCCTCGGTTCCTTTTGT 59.528 50.000 0.00 0.00 0.00 2.83
251 252 1.826385 ATCTGCCTCGGTTCCTTTTG 58.174 50.000 0.00 0.00 0.00 2.44
252 253 2.586648 AATCTGCCTCGGTTCCTTTT 57.413 45.000 0.00 0.00 0.00 2.27
253 254 2.586648 AAATCTGCCTCGGTTCCTTT 57.413 45.000 0.00 0.00 0.00 3.11
254 255 2.355818 GGTAAATCTGCCTCGGTTCCTT 60.356 50.000 0.00 0.00 0.00 3.36
255 256 1.209747 GGTAAATCTGCCTCGGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
256 257 1.664873 GGTAAATCTGCCTCGGTTCC 58.335 55.000 0.00 0.00 0.00 3.62
257 258 1.287425 CGGTAAATCTGCCTCGGTTC 58.713 55.000 0.00 0.00 0.00 3.62
258 259 0.611714 ACGGTAAATCTGCCTCGGTT 59.388 50.000 0.00 0.00 0.00 4.44
259 260 0.108329 CACGGTAAATCTGCCTCGGT 60.108 55.000 0.00 0.00 0.00 4.69
260 261 1.429148 GCACGGTAAATCTGCCTCGG 61.429 60.000 0.00 0.00 0.00 4.63
261 262 0.460284 AGCACGGTAAATCTGCCTCG 60.460 55.000 0.00 0.00 0.00 4.63
262 263 1.291132 GAGCACGGTAAATCTGCCTC 58.709 55.000 0.00 0.00 0.00 4.70
263 264 0.460284 CGAGCACGGTAAATCTGCCT 60.460 55.000 0.00 0.00 35.72 4.75
264 265 2.006772 CGAGCACGGTAAATCTGCC 58.993 57.895 0.00 0.00 35.72 4.85
265 266 1.348594 GCGAGCACGGTAAATCTGC 59.651 57.895 5.52 0.00 40.15 4.26
266 267 0.739462 TGGCGAGCACGGTAAATCTG 60.739 55.000 5.52 0.00 40.15 2.90
267 268 0.036765 TTGGCGAGCACGGTAAATCT 60.037 50.000 5.52 0.00 40.15 2.40
268 269 0.373716 CTTGGCGAGCACGGTAAATC 59.626 55.000 5.52 0.00 40.15 2.17
269 270 0.321298 ACTTGGCGAGCACGGTAAAT 60.321 50.000 5.52 0.00 40.15 1.40
270 271 0.317799 TACTTGGCGAGCACGGTAAA 59.682 50.000 5.52 0.00 40.15 2.01
271 272 0.317799 TTACTTGGCGAGCACGGTAA 59.682 50.000 5.52 2.57 40.15 2.85
272 273 0.317799 TTTACTTGGCGAGCACGGTA 59.682 50.000 5.52 0.00 40.15 4.02
273 274 1.070105 TTTACTTGGCGAGCACGGT 59.930 52.632 5.52 0.00 40.15 4.83
274 275 0.949105 AGTTTACTTGGCGAGCACGG 60.949 55.000 5.52 0.00 40.15 4.94
275 276 0.865769 AAGTTTACTTGGCGAGCACG 59.134 50.000 0.37 0.00 37.41 5.34
285 286 3.189287 CGCTGAGGATTGCAAGTTTACTT 59.811 43.478 4.94 0.00 36.45 2.24
286 287 2.744202 CGCTGAGGATTGCAAGTTTACT 59.256 45.455 4.94 0.00 0.00 2.24
287 288 2.742053 TCGCTGAGGATTGCAAGTTTAC 59.258 45.455 4.94 0.00 0.00 2.01
288 289 3.052455 TCGCTGAGGATTGCAAGTTTA 57.948 42.857 4.94 0.00 0.00 2.01
289 290 1.896220 TCGCTGAGGATTGCAAGTTT 58.104 45.000 4.94 0.00 0.00 2.66
290 291 1.537202 GTTCGCTGAGGATTGCAAGTT 59.463 47.619 4.94 0.00 0.00 2.66
291 292 1.160137 GTTCGCTGAGGATTGCAAGT 58.840 50.000 4.94 0.00 0.00 3.16
292 293 1.159285 TGTTCGCTGAGGATTGCAAG 58.841 50.000 4.94 0.00 0.00 4.01
293 294 1.825090 ATGTTCGCTGAGGATTGCAA 58.175 45.000 0.00 0.00 0.00 4.08
294 295 2.689553 TATGTTCGCTGAGGATTGCA 57.310 45.000 0.00 0.00 0.00 4.08
295 296 4.558538 AATTATGTTCGCTGAGGATTGC 57.441 40.909 0.00 0.00 0.00 3.56
296 297 5.276270 CCAAATTATGTTCGCTGAGGATTG 58.724 41.667 0.00 0.00 0.00 2.67
297 298 4.202050 GCCAAATTATGTTCGCTGAGGATT 60.202 41.667 0.00 0.00 0.00 3.01
298 299 3.316308 GCCAAATTATGTTCGCTGAGGAT 59.684 43.478 0.00 0.00 0.00 3.24
299 300 2.682856 GCCAAATTATGTTCGCTGAGGA 59.317 45.455 0.00 0.00 0.00 3.71
300 301 2.423185 TGCCAAATTATGTTCGCTGAGG 59.577 45.455 0.00 0.00 0.00 3.86
301 302 3.763097 TGCCAAATTATGTTCGCTGAG 57.237 42.857 0.00 0.00 0.00 3.35
302 303 5.761003 CATATGCCAAATTATGTTCGCTGA 58.239 37.500 0.00 0.00 0.00 4.26
303 304 4.383649 GCATATGCCAAATTATGTTCGCTG 59.616 41.667 17.26 0.00 34.31 5.18
304 305 4.549458 GCATATGCCAAATTATGTTCGCT 58.451 39.130 17.26 0.00 34.31 4.93
305 306 4.891277 GCATATGCCAAATTATGTTCGC 57.109 40.909 17.26 0.00 34.31 4.70
319 320 2.031682 CGGCAGACTTTTAGGCATATGC 60.032 50.000 19.79 19.79 41.14 3.14
320 321 3.206150 ACGGCAGACTTTTAGGCATATG 58.794 45.455 0.00 0.00 0.00 1.78
321 322 3.560636 ACGGCAGACTTTTAGGCATAT 57.439 42.857 0.00 0.00 0.00 1.78
322 323 3.267483 GAACGGCAGACTTTTAGGCATA 58.733 45.455 0.00 0.00 0.00 3.14
323 324 2.084546 GAACGGCAGACTTTTAGGCAT 58.915 47.619 0.00 0.00 0.00 4.40
324 325 1.519408 GAACGGCAGACTTTTAGGCA 58.481 50.000 0.00 0.00 0.00 4.75
325 326 0.442699 CGAACGGCAGACTTTTAGGC 59.557 55.000 0.00 0.00 0.00 3.93
326 327 0.442699 GCGAACGGCAGACTTTTAGG 59.557 55.000 0.00 0.00 42.87 2.69
327 328 0.442699 GGCGAACGGCAGACTTTTAG 59.557 55.000 15.29 0.00 46.16 1.85
328 329 1.286354 CGGCGAACGGCAGACTTTTA 61.286 55.000 19.40 0.00 46.16 1.52
329 330 2.604174 CGGCGAACGGCAGACTTTT 61.604 57.895 19.40 0.00 46.16 2.27
330 331 3.041940 CGGCGAACGGCAGACTTT 61.042 61.111 19.40 0.00 46.16 2.66
346 347 0.859232 CCTGAAATATCCCGCGAACG 59.141 55.000 8.23 0.00 39.67 3.95
347 348 1.949465 ACCTGAAATATCCCGCGAAC 58.051 50.000 8.23 0.00 0.00 3.95
348 349 4.768448 TCTATACCTGAAATATCCCGCGAA 59.232 41.667 8.23 0.00 0.00 4.70
349 350 4.338012 TCTATACCTGAAATATCCCGCGA 58.662 43.478 8.23 0.00 0.00 5.87
350 351 4.398358 TCTCTATACCTGAAATATCCCGCG 59.602 45.833 0.00 0.00 0.00 6.46
351 352 5.916661 TCTCTATACCTGAAATATCCCGC 57.083 43.478 0.00 0.00 0.00 6.13
352 353 7.976734 GTGATTCTCTATACCTGAAATATCCCG 59.023 40.741 0.00 0.00 0.00 5.14
353 354 8.261522 GGTGATTCTCTATACCTGAAATATCCC 58.738 40.741 0.00 0.00 0.00 3.85
354 355 8.261522 GGGTGATTCTCTATACCTGAAATATCC 58.738 40.741 0.00 0.00 33.71 2.59
355 356 8.816894 TGGGTGATTCTCTATACCTGAAATATC 58.183 37.037 0.00 0.00 33.71 1.63
356 357 8.742125 TGGGTGATTCTCTATACCTGAAATAT 57.258 34.615 0.00 0.00 33.71 1.28
357 358 8.742125 ATGGGTGATTCTCTATACCTGAAATA 57.258 34.615 0.00 0.00 33.71 1.40
358 359 7.256835 GGATGGGTGATTCTCTATACCTGAAAT 60.257 40.741 0.00 0.00 33.71 2.17
359 360 6.043243 GGATGGGTGATTCTCTATACCTGAAA 59.957 42.308 0.00 0.00 33.71 2.69
360 361 5.544176 GGATGGGTGATTCTCTATACCTGAA 59.456 44.000 0.00 0.00 33.71 3.02
361 362 5.087323 GGATGGGTGATTCTCTATACCTGA 58.913 45.833 0.00 0.00 33.71 3.86
362 363 4.840680 TGGATGGGTGATTCTCTATACCTG 59.159 45.833 0.00 0.00 33.71 4.00
363 364 5.093236 TGGATGGGTGATTCTCTATACCT 57.907 43.478 0.00 0.00 33.71 3.08
364 365 5.825593 TTGGATGGGTGATTCTCTATACC 57.174 43.478 0.00 0.00 0.00 2.73
365 366 6.881602 GGATTTGGATGGGTGATTCTCTATAC 59.118 42.308 0.00 0.00 0.00 1.47
366 367 6.562223 TGGATTTGGATGGGTGATTCTCTATA 59.438 38.462 0.00 0.00 0.00 1.31
367 368 5.373555 TGGATTTGGATGGGTGATTCTCTAT 59.626 40.000 0.00 0.00 0.00 1.98
368 369 4.726317 TGGATTTGGATGGGTGATTCTCTA 59.274 41.667 0.00 0.00 0.00 2.43
369 370 3.528905 TGGATTTGGATGGGTGATTCTCT 59.471 43.478 0.00 0.00 0.00 3.10
370 371 3.902218 TGGATTTGGATGGGTGATTCTC 58.098 45.455 0.00 0.00 0.00 2.87
371 372 4.220724 CATGGATTTGGATGGGTGATTCT 58.779 43.478 0.00 0.00 0.00 2.40
372 373 3.962718 ACATGGATTTGGATGGGTGATTC 59.037 43.478 0.00 0.00 0.00 2.52
373 374 3.998279 ACATGGATTTGGATGGGTGATT 58.002 40.909 0.00 0.00 0.00 2.57
374 375 3.693526 ACATGGATTTGGATGGGTGAT 57.306 42.857 0.00 0.00 0.00 3.06
375 376 3.471430 AACATGGATTTGGATGGGTGA 57.529 42.857 0.00 0.00 0.00 4.02
376 377 4.280819 ACTAACATGGATTTGGATGGGTG 58.719 43.478 0.00 0.00 0.00 4.61
377 378 4.608170 ACTAACATGGATTTGGATGGGT 57.392 40.909 0.00 0.00 0.00 4.51
378 379 4.099881 CCAACTAACATGGATTTGGATGGG 59.900 45.833 11.43 0.00 40.56 4.00
379 380 4.441913 GCCAACTAACATGGATTTGGATGG 60.442 45.833 17.84 11.15 40.56 3.51
380 381 4.160065 TGCCAACTAACATGGATTTGGATG 59.840 41.667 17.84 3.25 40.56 3.51
381 382 4.160252 GTGCCAACTAACATGGATTTGGAT 59.840 41.667 17.84 0.00 40.56 3.41
382 383 3.509575 GTGCCAACTAACATGGATTTGGA 59.490 43.478 17.84 5.63 40.56 3.53
383 384 3.511146 AGTGCCAACTAACATGGATTTGG 59.489 43.478 12.17 12.17 40.56 3.28
384 385 4.789012 AGTGCCAACTAACATGGATTTG 57.211 40.909 0.00 0.00 40.56 2.32
385 386 4.399303 GCTAGTGCCAACTAACATGGATTT 59.601 41.667 0.00 0.00 40.56 2.17
386 387 3.947834 GCTAGTGCCAACTAACATGGATT 59.052 43.478 0.00 0.00 40.56 3.01
387 388 3.054434 TGCTAGTGCCAACTAACATGGAT 60.054 43.478 0.00 0.00 40.56 3.41
388 389 2.304470 TGCTAGTGCCAACTAACATGGA 59.696 45.455 0.00 0.00 40.56 3.41
389 390 2.679837 CTGCTAGTGCCAACTAACATGG 59.320 50.000 0.00 0.00 38.43 3.66
390 391 2.096496 GCTGCTAGTGCCAACTAACATG 59.904 50.000 0.00 0.00 38.43 3.21
391 392 2.359900 GCTGCTAGTGCCAACTAACAT 58.640 47.619 0.00 0.00 38.43 2.71
392 393 1.808411 GCTGCTAGTGCCAACTAACA 58.192 50.000 0.00 0.00 38.43 2.41
393 394 0.721718 CGCTGCTAGTGCCAACTAAC 59.278 55.000 0.00 0.00 38.43 2.34
394 395 0.391130 CCGCTGCTAGTGCCAACTAA 60.391 55.000 0.00 0.00 38.43 2.24
395 396 1.218047 CCGCTGCTAGTGCCAACTA 59.782 57.895 0.00 0.00 37.88 2.24
396 397 1.541310 TACCGCTGCTAGTGCCAACT 61.541 55.000 0.00 0.00 40.67 3.16
397 398 0.672401 TTACCGCTGCTAGTGCCAAC 60.672 55.000 0.00 0.00 38.71 3.77
398 399 0.672401 GTTACCGCTGCTAGTGCCAA 60.672 55.000 0.00 0.00 38.71 4.52
399 400 1.079405 GTTACCGCTGCTAGTGCCA 60.079 57.895 0.00 0.00 38.71 4.92
400 401 0.458669 TAGTTACCGCTGCTAGTGCC 59.541 55.000 0.00 0.00 38.71 5.01
401 402 1.841450 CTAGTTACCGCTGCTAGTGC 58.159 55.000 0.00 0.00 40.20 4.40
402 403 1.841450 GCTAGTTACCGCTGCTAGTG 58.159 55.000 0.00 0.00 35.79 2.74
403 404 0.381089 CGCTAGTTACCGCTGCTAGT 59.619 55.000 0.00 0.00 35.79 2.57
404 405 0.317938 CCGCTAGTTACCGCTGCTAG 60.318 60.000 0.00 0.00 36.29 3.42
405 406 1.731433 CCCGCTAGTTACCGCTGCTA 61.731 60.000 0.00 0.00 0.00 3.49
406 407 2.494918 CCGCTAGTTACCGCTGCT 59.505 61.111 0.00 0.00 0.00 4.24
407 408 2.585247 CCCGCTAGTTACCGCTGC 60.585 66.667 0.00 0.00 0.00 5.25
408 409 2.106332 CCCCGCTAGTTACCGCTG 59.894 66.667 0.00 0.00 0.00 5.18
409 410 2.043652 TCCCCGCTAGTTACCGCT 60.044 61.111 0.00 0.00 0.00 5.52
410 411 2.073037 CTCTCCCCGCTAGTTACCGC 62.073 65.000 0.00 0.00 0.00 5.68
411 412 0.465097 TCTCTCCCCGCTAGTTACCG 60.465 60.000 0.00 0.00 0.00 4.02
412 413 1.133853 TCTCTCTCCCCGCTAGTTACC 60.134 57.143 0.00 0.00 0.00 2.85
413 414 2.158784 TCTCTCTCTCCCCGCTAGTTAC 60.159 54.545 0.00 0.00 0.00 2.50
414 415 2.105134 CTCTCTCTCTCCCCGCTAGTTA 59.895 54.545 0.00 0.00 0.00 2.24
415 416 0.920438 TCTCTCTCTCCCCGCTAGTT 59.080 55.000 0.00 0.00 0.00 2.24
416 417 0.472471 CTCTCTCTCTCCCCGCTAGT 59.528 60.000 0.00 0.00 0.00 2.57
417 418 0.762418 TCTCTCTCTCTCCCCGCTAG 59.238 60.000 0.00 0.00 0.00 3.42
418 419 0.762418 CTCTCTCTCTCTCCCCGCTA 59.238 60.000 0.00 0.00 0.00 4.26
419 420 0.986019 TCTCTCTCTCTCTCCCCGCT 60.986 60.000 0.00 0.00 0.00 5.52
420 421 0.535102 CTCTCTCTCTCTCTCCCCGC 60.535 65.000 0.00 0.00 0.00 6.13
421 422 1.070758 CTCTCTCTCTCTCTCTCCCCG 59.929 61.905 0.00 0.00 0.00 5.73
422 423 2.127708 ACTCTCTCTCTCTCTCTCCCC 58.872 57.143 0.00 0.00 0.00 4.81
423 424 2.505819 ACACTCTCTCTCTCTCTCTCCC 59.494 54.545 0.00 0.00 0.00 4.30
424 425 3.055094 ACACACTCTCTCTCTCTCTCTCC 60.055 52.174 0.00 0.00 0.00 3.71
425 426 3.935203 CACACACTCTCTCTCTCTCTCTC 59.065 52.174 0.00 0.00 0.00 3.20
426 427 3.327757 ACACACACTCTCTCTCTCTCTCT 59.672 47.826 0.00 0.00 0.00 3.10
427 428 3.436704 CACACACACTCTCTCTCTCTCTC 59.563 52.174 0.00 0.00 0.00 3.20
428 429 3.181445 ACACACACACTCTCTCTCTCTCT 60.181 47.826 0.00 0.00 0.00 3.10
429 430 3.058293 CACACACACACTCTCTCTCTCTC 60.058 52.174 0.00 0.00 0.00 3.20
430 431 2.884012 CACACACACACTCTCTCTCTCT 59.116 50.000 0.00 0.00 0.00 3.10
431 432 2.621055 ACACACACACACTCTCTCTCTC 59.379 50.000 0.00 0.00 0.00 3.20
432 433 2.660572 ACACACACACACTCTCTCTCT 58.339 47.619 0.00 0.00 0.00 3.10
433 434 4.569761 TTACACACACACACTCTCTCTC 57.430 45.455 0.00 0.00 0.00 3.20
434 435 5.339008 TTTTACACACACACACTCTCTCT 57.661 39.130 0.00 0.00 0.00 3.10
435 436 5.500290 CGTTTTTACACACACACACTCTCTC 60.500 44.000 0.00 0.00 0.00 3.20
436 437 4.328983 CGTTTTTACACACACACACTCTCT 59.671 41.667 0.00 0.00 0.00 3.10
437 438 4.574759 CGTTTTTACACACACACACTCTC 58.425 43.478 0.00 0.00 0.00 3.20
438 439 3.181514 GCGTTTTTACACACACACACTCT 60.182 43.478 0.00 0.00 0.00 3.24
439 440 3.095738 GCGTTTTTACACACACACACTC 58.904 45.455 0.00 0.00 0.00 3.51
440 441 2.484651 TGCGTTTTTACACACACACACT 59.515 40.909 0.00 0.00 0.00 3.55
441 442 2.852748 TGCGTTTTTACACACACACAC 58.147 42.857 0.00 0.00 0.00 3.82
442 443 3.554259 TTGCGTTTTTACACACACACA 57.446 38.095 0.00 0.00 0.00 3.72
443 444 3.241520 GCTTTGCGTTTTTACACACACAC 60.242 43.478 0.00 0.00 0.00 3.82
444 445 2.917971 GCTTTGCGTTTTTACACACACA 59.082 40.909 0.00 0.00 0.00 3.72
445 446 2.280445 GGCTTTGCGTTTTTACACACAC 59.720 45.455 0.00 0.00 0.00 3.82
446 447 2.094700 TGGCTTTGCGTTTTTACACACA 60.095 40.909 0.00 0.00 0.00 3.72
472 473 1.572085 CTCTCCAGCAAAGCACACCG 61.572 60.000 0.00 0.00 0.00 4.94
481 482 1.077828 TCCTCTTCTCCTCTCCAGCAA 59.922 52.381 0.00 0.00 0.00 3.91
482 483 0.707024 TCCTCTTCTCCTCTCCAGCA 59.293 55.000 0.00 0.00 0.00 4.41
483 484 1.402787 CTCCTCTTCTCCTCTCCAGC 58.597 60.000 0.00 0.00 0.00 4.85
484 485 1.411501 CCCTCCTCTTCTCCTCTCCAG 60.412 61.905 0.00 0.00 0.00 3.86
485 486 0.633921 CCCTCCTCTTCTCCTCTCCA 59.366 60.000 0.00 0.00 0.00 3.86
496 497 4.150454 CCGGCTCTCCCCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
644 663 0.182299 CCATTTGCTCCCTCCTCTCC 59.818 60.000 0.00 0.00 0.00 3.71
645 664 1.207791 TCCATTTGCTCCCTCCTCTC 58.792 55.000 0.00 0.00 0.00 3.20
646 665 1.673767 TTCCATTTGCTCCCTCCTCT 58.326 50.000 0.00 0.00 0.00 3.69
647 666 2.514458 TTTCCATTTGCTCCCTCCTC 57.486 50.000 0.00 0.00 0.00 3.71
648 667 2.625087 CCATTTCCATTTGCTCCCTCCT 60.625 50.000 0.00 0.00 0.00 3.69
649 668 1.758862 CCATTTCCATTTGCTCCCTCC 59.241 52.381 0.00 0.00 0.00 4.30
650 669 2.428530 GTCCATTTCCATTTGCTCCCTC 59.571 50.000 0.00 0.00 0.00 4.30
651 670 2.225343 TGTCCATTTCCATTTGCTCCCT 60.225 45.455 0.00 0.00 0.00 4.20
652 671 2.178580 TGTCCATTTCCATTTGCTCCC 58.821 47.619 0.00 0.00 0.00 4.30
701 720 1.812214 GCCGAGCGCGTTAATCAGAG 61.812 60.000 8.43 0.00 35.23 3.35
754 778 4.289934 GGGGAATCTTAATTAGGGAGGGAG 59.710 50.000 0.00 0.00 0.00 4.30
755 779 4.076784 AGGGGAATCTTAATTAGGGAGGGA 60.077 45.833 0.00 0.00 0.00 4.20
756 780 4.252010 AGGGGAATCTTAATTAGGGAGGG 58.748 47.826 0.00 0.00 0.00 4.30
757 781 5.932027 AAGGGGAATCTTAATTAGGGAGG 57.068 43.478 0.00 0.00 0.00 4.30
795 819 1.682684 GCCACGGAGGAAGAGGAGA 60.683 63.158 0.00 0.00 41.22 3.71
797 821 3.068691 CGCCACGGAGGAAGAGGA 61.069 66.667 0.00 0.00 41.22 3.71
821 860 1.529244 CAGGGGGCCGGAAATCATC 60.529 63.158 5.05 0.00 0.00 2.92
871 910 1.642238 TCCTGGTACTACTGCCTGGTA 59.358 52.381 0.00 0.00 42.37 3.25
873 912 1.115467 CTCCTGGTACTACTGCCTGG 58.885 60.000 0.00 0.00 42.90 4.45
878 917 2.761208 CCAACTCCTCCTGGTACTACTG 59.239 54.545 0.00 0.00 34.23 2.74
881 920 2.024273 CCTCCAACTCCTCCTGGTACTA 60.024 54.545 0.00 0.00 34.11 1.82
893 932 0.325203 AGCTCCTCCTCCTCCAACTC 60.325 60.000 0.00 0.00 0.00 3.01
894 933 0.325203 GAGCTCCTCCTCCTCCAACT 60.325 60.000 0.87 0.00 0.00 3.16
895 934 1.334384 GGAGCTCCTCCTCCTCCAAC 61.334 65.000 26.25 0.00 46.41 3.77
896 935 1.002274 GGAGCTCCTCCTCCTCCAA 59.998 63.158 26.25 0.00 46.41 3.53
897 936 2.693017 GGAGCTCCTCCTCCTCCA 59.307 66.667 26.25 0.00 46.41 3.86
991 1030 2.750888 GCTTGAACATCCCGGCGAC 61.751 63.158 9.30 0.00 0.00 5.19
992 1031 2.435938 GCTTGAACATCCCGGCGA 60.436 61.111 9.30 0.00 0.00 5.54
993 1032 2.436646 AGCTTGAACATCCCGGCG 60.437 61.111 0.00 0.00 0.00 6.46
1100 1185 2.190578 GGAATCTGGGCGGGTGAG 59.809 66.667 0.00 0.00 0.00 3.51
1162 1253 2.350895 CCACCGCCACTGGAATCA 59.649 61.111 0.00 0.00 0.00 2.57
1211 1302 1.201098 GAGCGACGCGATTGGTAGTC 61.201 60.000 15.93 0.00 0.00 2.59
1226 1317 0.809241 GCAGATCAACCTGAGGAGCG 60.809 60.000 4.99 0.00 36.29 5.03
1234 1325 3.622630 AGTAGTACTCGCAGATCAACCT 58.377 45.455 0.00 0.00 33.89 3.50
1236 1327 5.524646 ACTCTAGTAGTACTCGCAGATCAAC 59.475 44.000 5.96 0.00 36.36 3.18
1244 1335 9.369904 AGCTAAATATACTCTAGTAGTACTCGC 57.630 37.037 5.96 0.00 43.47 5.03
1255 1350 9.755122 TGGCTTGATCTAGCTAAATATACTCTA 57.245 33.333 24.93 0.00 40.99 2.43
1256 1351 8.657387 TGGCTTGATCTAGCTAAATATACTCT 57.343 34.615 24.93 0.00 40.99 3.24
1257 1352 9.311916 CATGGCTTGATCTAGCTAAATATACTC 57.688 37.037 24.93 8.09 40.99 2.59
1258 1353 7.768120 GCATGGCTTGATCTAGCTAAATATACT 59.232 37.037 24.93 3.33 40.99 2.12
1259 1354 7.768120 AGCATGGCTTGATCTAGCTAAATATAC 59.232 37.037 24.93 9.34 40.99 1.47
1260 1355 7.855375 AGCATGGCTTGATCTAGCTAAATATA 58.145 34.615 24.93 7.10 40.99 0.86
1261 1356 6.719301 AGCATGGCTTGATCTAGCTAAATAT 58.281 36.000 24.93 11.48 40.99 1.28
1283 1378 1.299926 CGGGCGTAGTATGGTGAGC 60.300 63.158 0.00 0.00 0.00 4.26
1369 1483 4.096682 CACAGAGGTTACTACTAGTCCAGC 59.903 50.000 0.00 0.00 0.00 4.85
1373 1487 9.570488 CATTAAACACAGAGGTTACTACTAGTC 57.430 37.037 0.00 0.00 0.00 2.59
1386 1500 3.568538 GCAGCAACCATTAAACACAGAG 58.431 45.455 0.00 0.00 0.00 3.35
1387 1501 2.031245 CGCAGCAACCATTAAACACAGA 60.031 45.455 0.00 0.00 0.00 3.41
1429 1543 3.668142 TAGGCTTGGGTTGGGGGC 61.668 66.667 0.00 0.00 0.00 5.80
1437 1551 0.606401 CACACACAGGTAGGCTTGGG 60.606 60.000 0.00 0.00 0.00 4.12
1506 1670 1.315257 ATGCACCGCTGGTTTGATCC 61.315 55.000 0.00 0.00 31.02 3.36
1548 1715 7.404671 TGCTTTTTGTTTCCTAGAAAGAAGT 57.595 32.000 0.00 0.00 30.83 3.01
1550 1717 7.147742 ACCATGCTTTTTGTTTCCTAGAAAGAA 60.148 33.333 0.00 0.00 30.83 2.52
1560 1727 7.755373 GGAGAATACTACCATGCTTTTTGTTTC 59.245 37.037 0.00 0.00 0.00 2.78
1561 1728 7.451566 AGGAGAATACTACCATGCTTTTTGTTT 59.548 33.333 0.00 0.00 0.00 2.83
1562 1729 6.948309 AGGAGAATACTACCATGCTTTTTGTT 59.052 34.615 0.00 0.00 0.00 2.83
1564 1731 7.396540 AAGGAGAATACTACCATGCTTTTTG 57.603 36.000 0.00 0.00 0.00 2.44
1570 1748 5.059833 CCAGAAAGGAGAATACTACCATGC 58.940 45.833 0.00 0.00 41.22 4.06
1659 1843 1.248486 GGACTTGCCCTTGGAGAAAC 58.752 55.000 0.00 0.00 0.00 2.78
1674 1858 1.005215 CTGGCATTTCTTCCAGGGACT 59.995 52.381 0.51 0.00 44.64 3.85
1705 1889 3.815401 GAGTGTAAGTGTGTTGCCTGAAT 59.185 43.478 0.00 0.00 0.00 2.57
1707 1891 2.484770 GGAGTGTAAGTGTGTTGCCTGA 60.485 50.000 0.00 0.00 0.00 3.86
1709 1893 1.488812 TGGAGTGTAAGTGTGTTGCCT 59.511 47.619 0.00 0.00 0.00 4.75
1710 1894 1.602377 GTGGAGTGTAAGTGTGTTGCC 59.398 52.381 0.00 0.00 0.00 4.52
1711 1895 1.602377 GGTGGAGTGTAAGTGTGTTGC 59.398 52.381 0.00 0.00 0.00 4.17
1712 1896 2.612212 GTGGTGGAGTGTAAGTGTGTTG 59.388 50.000 0.00 0.00 0.00 3.33
1713 1897 2.237643 TGTGGTGGAGTGTAAGTGTGTT 59.762 45.455 0.00 0.00 0.00 3.32
1714 1898 1.834896 TGTGGTGGAGTGTAAGTGTGT 59.165 47.619 0.00 0.00 0.00 3.72
1715 1899 2.483876 CTGTGGTGGAGTGTAAGTGTG 58.516 52.381 0.00 0.00 0.00 3.82
1717 1901 1.270839 CCCTGTGGTGGAGTGTAAGTG 60.271 57.143 0.00 0.00 0.00 3.16
1718 1902 1.056660 CCCTGTGGTGGAGTGTAAGT 58.943 55.000 0.00 0.00 0.00 2.24
1719 1903 0.324943 CCCCTGTGGTGGAGTGTAAG 59.675 60.000 0.00 0.00 0.00 2.34
1722 1906 0.772124 ATTCCCCTGTGGTGGAGTGT 60.772 55.000 0.00 0.00 34.77 3.55
1723 1907 0.322816 CATTCCCCTGTGGTGGAGTG 60.323 60.000 0.00 0.00 32.92 3.51
1731 1944 1.677820 GGTTCGGTACATTCCCCTGTG 60.678 57.143 0.00 0.00 0.00 3.66
1734 1947 0.909623 CAGGTTCGGTACATTCCCCT 59.090 55.000 0.00 0.00 0.00 4.79
1743 1956 2.690786 CGGATTTTCACAGGTTCGGTA 58.309 47.619 0.00 0.00 0.00 4.02
1745 1958 0.168128 GCGGATTTTCACAGGTTCGG 59.832 55.000 0.00 0.00 0.00 4.30
1769 1985 2.301577 AAGGAAGTGCAGATAGTCGC 57.698 50.000 0.00 0.00 0.00 5.19
1794 2010 4.469657 ACCCTGAGCATACTGAACAAAAA 58.530 39.130 0.00 0.00 0.00 1.94
1798 2014 3.072330 TGAAACCCTGAGCATACTGAACA 59.928 43.478 0.00 0.00 0.00 3.18
1825 2041 2.556622 AGCGGTTGTACCAAAGGAAATG 59.443 45.455 0.00 0.00 38.47 2.32
1833 2049 0.945265 GCACGTAGCGGTTGTACCAA 60.945 55.000 0.00 0.00 38.47 3.67
1852 2068 5.238650 AGAGTCGTTGAAAACCCAGTAAATG 59.761 40.000 0.00 0.00 46.28 2.32
1862 2078 6.146184 TCAGATCAATCAGAGTCGTTGAAAAC 59.854 38.462 11.03 7.41 45.31 2.43
1891 2107 2.161855 CTGCAGGCACCTGTTGAATAA 58.838 47.619 17.72 0.00 45.24 1.40
1897 2113 0.391661 CGATACTGCAGGCACCTGTT 60.392 55.000 19.93 5.81 45.24 3.16
1904 2120 1.227380 CCTGTCCGATACTGCAGGC 60.227 63.158 19.93 6.04 41.46 4.85
2057 2273 2.688507 TGGCACTCATCGAACTCTTTC 58.311 47.619 0.00 0.00 0.00 2.62
2125 2341 7.773224 AGGTAGCTAGATATATAGAGCACAGTG 59.227 40.741 16.71 0.00 37.40 3.66
2147 2363 5.823570 TCGGTGAGATTGAAAAACAAAGGTA 59.176 36.000 0.00 0.00 42.03 3.08
2218 2435 1.108776 CCCTGCAACATGGGATTGAG 58.891 55.000 2.49 0.00 46.15 3.02
2368 2585 1.318576 AAGGAAACGGTTGCAAGGAG 58.681 50.000 7.67 0.00 0.00 3.69
2393 2610 1.272147 ACAGGAGCACCCAGAAAATCC 60.272 52.381 0.00 0.00 37.41 3.01
2400 2617 3.055530 GGATCATATACAGGAGCACCCAG 60.056 52.174 0.00 0.00 37.41 4.45
2410 2627 5.219343 TCAGGTTGCAGGATCATATACAG 57.781 43.478 0.00 0.00 0.00 2.74
2425 2642 2.102925 AGTTGGCACCATTTTCAGGTTG 59.897 45.455 0.00 0.00 37.23 3.77
2573 2790 5.473846 GGGAAGTAGGAAAAGAGAAAAGGTG 59.526 44.000 0.00 0.00 0.00 4.00
2576 2793 7.767250 AATGGGAAGTAGGAAAAGAGAAAAG 57.233 36.000 0.00 0.00 0.00 2.27
2592 2809 5.278660 GCACATTGGAGCTATAAATGGGAAG 60.279 44.000 17.56 7.85 36.94 3.46
2650 2867 4.067192 GCAAAAACAATGGGAGAGCAATT 58.933 39.130 0.00 0.00 0.00 2.32
2868 3085 1.873591 CTGTTTCCAGGTTCGTCTTGG 59.126 52.381 5.50 5.50 43.58 3.61
2903 3120 7.979786 ACTTAGGATGGAGAGAATTGTTCTA 57.020 36.000 0.00 0.00 40.87 2.10
2954 3171 1.208870 CGCATTGCACGCCTGTTAA 59.791 52.632 9.69 0.00 0.00 2.01
3071 3288 5.026121 TCCTGAAGAGTGGTATCATCAGTT 58.974 41.667 7.83 0.00 41.33 3.16
3264 3496 4.828829 AGGGTGTTTACTTCCAACTATCG 58.171 43.478 0.00 0.00 0.00 2.92
3286 3518 6.707290 AGTATGTAACTGCTGTTGGAACATA 58.293 36.000 18.22 18.61 35.59 2.29
3327 3559 9.525409 GAGAAATATTCATGGACTGGAATTTTG 57.475 33.333 0.00 0.00 35.49 2.44
3337 3569 7.765307 TGCAGAAAAGAGAAATATTCATGGAC 58.235 34.615 0.00 0.00 0.00 4.02
3395 3627 8.918202 AAACTTAAGACATAATGTGAGGACAA 57.082 30.769 10.09 0.00 35.11 3.18
3783 4024 5.393962 CGGGAACTGAAAGATGAATTGTTC 58.606 41.667 0.00 0.00 37.43 3.18
4026 4267 1.999024 GCTAGCTCAGTCTGTTGCTTC 59.001 52.381 21.39 13.44 37.02 3.86
4083 4324 5.551760 ATTCTTCAATTTCGTGCCTGTAG 57.448 39.130 0.00 0.00 0.00 2.74
4431 4672 1.204146 TCCTAGCCCATTCTGTGTCC 58.796 55.000 0.00 0.00 0.00 4.02
4665 4906 1.152567 CTGCCCTTTTCCCACACCA 60.153 57.895 0.00 0.00 0.00 4.17
5070 5311 5.412594 GTCATCATTTTCCTGCTGTTGTAGA 59.587 40.000 0.00 0.00 0.00 2.59
5110 5351 5.565259 CAGACATCAAATTTTCCGTTTCGAG 59.435 40.000 0.00 0.00 0.00 4.04
5541 5782 6.083630 CGACAGTTTTCTTTGTGTTTCTTGA 58.916 36.000 0.00 0.00 0.00 3.02
5617 5858 6.874134 TCTTCAATAAGGTTCTCAACTGTAGC 59.126 38.462 0.00 0.00 33.22 3.58
6626 6867 3.624410 TGCTTCATGTACATGTGATGCTC 59.376 43.478 30.03 15.88 42.59 4.26
6789 7030 4.021192 AGGAACATCAATGCGGTGATTTTT 60.021 37.500 0.00 0.00 36.04 1.94
6880 7121 8.730680 GCTTAGTTTCCAGTATTTGAATCTTCA 58.269 33.333 0.00 0.00 34.92 3.02
7406 7652 9.149225 CCAATAAAATGAAATGATTTTCCACGA 57.851 29.630 0.00 0.00 40.49 4.35
7407 7653 7.904461 GCCAATAAAATGAAATGATTTTCCACG 59.096 33.333 0.00 0.00 40.49 4.94
7435 7681 4.223953 TCTACAGTATGGACAATCCCTCC 58.776 47.826 0.00 0.00 43.62 4.30
7856 8104 6.982160 ATTGGCAAGAAAATAGCATCCATA 57.018 33.333 5.96 0.00 0.00 2.74
7893 8141 2.790433 TGTTGCTCTACCCATCCAAAC 58.210 47.619 0.00 0.00 0.00 2.93
8090 8338 4.995487 TCATGATAATCTGACATCAGCAGC 59.005 41.667 3.88 0.00 43.46 5.25
8091 8339 6.651225 ACATCATGATAATCTGACATCAGCAG 59.349 38.462 8.15 0.00 43.46 4.24
8092 8340 6.426937 CACATCATGATAATCTGACATCAGCA 59.573 38.462 8.15 0.00 43.46 4.41
8093 8341 6.649557 TCACATCATGATAATCTGACATCAGC 59.350 38.462 8.15 0.00 36.79 4.26
8187 8435 5.247564 TCTTTTCTTCCGGGAAATAGTCAGA 59.752 40.000 11.24 5.17 35.51 3.27
8188 8436 5.488341 TCTTTTCTTCCGGGAAATAGTCAG 58.512 41.667 11.24 2.98 35.51 3.51
8474 8727 9.825972 CGAAGAACAACATTTATCAACAGTTAT 57.174 29.630 0.00 0.00 0.00 1.89
8578 8831 8.462016 AGCAGTTGAATCCTTCATATTTTACAC 58.538 33.333 0.00 0.00 39.84 2.90
8631 8884 9.921637 CCCACAAAAGCAATAAGTAATTTTCTA 57.078 29.630 0.00 0.00 0.00 2.10
8632 8885 8.646900 TCCCACAAAAGCAATAAGTAATTTTCT 58.353 29.630 0.00 0.00 0.00 2.52
8738 8991 3.507162 TGCTTGTCTTGGATCCTTCAA 57.493 42.857 14.23 11.31 0.00 2.69
8769 9022 3.708403 ACACCAGCTCAATCATGAAGA 57.292 42.857 0.00 0.00 34.49 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.