Multiple sequence alignment - TraesCS4B01G359300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G359300 chr4B 100.000 5818 0 0 1 5818 649607860 649602043 0.000000e+00 10744
1 TraesCS4B01G359300 chr4D 92.083 4939 253 73 1 4876 503809813 503804950 0.000000e+00 6828
2 TraesCS4B01G359300 chr4D 88.628 554 34 16 4869 5403 503804924 503804381 0.000000e+00 647
3 TraesCS4B01G359300 chr4D 89.104 413 14 10 5397 5807 503804331 503803948 8.770000e-133 484
4 TraesCS4B01G359300 chr5A 89.632 4977 270 113 5 4874 688323411 688318574 0.000000e+00 6106
5 TraesCS4B01G359300 chr5A 90.146 548 39 9 4869 5403 688318544 688317999 0.000000e+00 699
6 TraesCS4B01G359300 chr5A 87.901 405 22 13 5397 5793 688317954 688317569 8.890000e-123 451
7 TraesCS4B01G359300 chr5A 79.566 553 56 22 5 521 688325057 688324526 5.580000e-90 342


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G359300 chr4B 649602043 649607860 5817 True 10744.0 10744 100.000000 1 5818 1 chr4B.!!$R1 5817
1 TraesCS4B01G359300 chr4D 503803948 503809813 5865 True 2653.0 6828 89.938333 1 5807 3 chr4D.!!$R1 5806
2 TraesCS4B01G359300 chr5A 688317569 688325057 7488 True 1899.5 6106 86.811250 5 5793 4 chr5A.!!$R1 5788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 2407 0.035534 ACGAGAGAGAGCAGAGCAGA 60.036 55.0 0.0 0.0 0.00 4.26 F
2037 3829 0.034059 AACTGGCTCCTGTCAACTCG 59.966 55.0 0.0 0.0 0.00 4.18 F
2931 4726 0.037697 TGGTTTCACGAGGACATCCG 60.038 55.0 0.0 0.0 42.08 4.18 F
4662 6475 0.394762 GCATCTGGCATCCAACTCCA 60.395 55.0 0.0 0.0 43.97 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2543 4338 1.080839 CCAAATGCGAACCAACCCG 60.081 57.895 0.00 0.0 0.00 5.28 R
3940 5749 0.381801 AAACTCTTGTGCAGCCAACG 59.618 50.000 0.00 0.0 0.00 4.10 R
4769 6582 0.034186 GGAATGACCTGATGTGGCCA 60.034 55.000 0.00 0.0 35.41 5.36 R
5524 7463 0.252479 AGGAGACAGGCAAGCATGAG 59.748 55.000 14.06 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.316588 TGAGACTCTCTATCATTGACGCC 59.683 47.826 7.58 0.00 0.00 5.68
46 47 2.261671 CCCGAGTCTTCCACGGTG 59.738 66.667 0.00 0.00 44.34 4.94
86 88 9.528018 AAAACCAGTACTACAAAACATCATTTG 57.472 29.630 0.00 0.00 44.11 2.32
100 102 3.853831 TCATTTGGCACACATCATCAC 57.146 42.857 0.00 0.00 39.29 3.06
102 104 0.880441 TTTGGCACACATCATCACCG 59.120 50.000 0.00 0.00 39.29 4.94
103 105 0.250684 TTGGCACACATCATCACCGT 60.251 50.000 0.00 0.00 39.29 4.83
111 113 0.535780 CATCATCACCGTGGGATGGG 60.536 60.000 18.72 5.68 41.89 4.00
142 144 1.458445 GCGAAACTTCTAACCCGTCAC 59.542 52.381 0.00 0.00 0.00 3.67
149 151 0.813184 TCTAACCCGTCACGGCTTAG 59.187 55.000 21.07 21.07 46.86 2.18
150 152 0.813184 CTAACCCGTCACGGCTTAGA 59.187 55.000 22.18 0.00 43.70 2.10
151 153 0.813184 TAACCCGTCACGGCTTAGAG 59.187 55.000 12.05 0.00 46.86 2.43
152 154 0.896940 AACCCGTCACGGCTTAGAGA 60.897 55.000 12.05 0.00 46.86 3.10
236 248 1.146263 GGCCACCTAACCATCCTCG 59.854 63.158 0.00 0.00 0.00 4.63
292 307 7.912056 TCACCATCATAGAAATATTGCTAGC 57.088 36.000 8.10 8.10 0.00 3.42
296 311 8.159447 ACCATCATAGAAATATTGCTAGCAGAA 58.841 33.333 18.45 10.48 0.00 3.02
342 381 4.453480 ACATGGAGGAAGAAAAGGTGAA 57.547 40.909 0.00 0.00 0.00 3.18
353 392 3.073209 AGAAAAGGTGAAAGGGAGGAGAC 59.927 47.826 0.00 0.00 0.00 3.36
373 2079 3.093172 GAAGGAGGCAGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
466 2178 3.576259 CCGACCCCAACCCCAAGT 61.576 66.667 0.00 0.00 0.00 3.16
467 2179 2.033602 CGACCCCAACCCCAAGTC 59.966 66.667 0.00 0.00 0.00 3.01
468 2180 2.439245 GACCCCAACCCCAAGTCC 59.561 66.667 0.00 0.00 0.00 3.85
469 2181 3.190391 ACCCCAACCCCAAGTCCC 61.190 66.667 0.00 0.00 0.00 4.46
470 2182 3.992641 CCCCAACCCCAAGTCCCC 61.993 72.222 0.00 0.00 0.00 4.81
473 2185 1.533033 CCAACCCCAAGTCCCCAAC 60.533 63.158 0.00 0.00 0.00 3.77
474 2186 1.533033 CAACCCCAAGTCCCCAACC 60.533 63.158 0.00 0.00 0.00 3.77
475 2187 2.785776 AACCCCAAGTCCCCAACCC 61.786 63.158 0.00 0.00 0.00 4.11
476 2188 2.863988 CCCCAAGTCCCCAACCCT 60.864 66.667 0.00 0.00 0.00 4.34
503 2226 2.183811 CTCGCTCCTCCTGTGCTG 59.816 66.667 0.00 0.00 0.00 4.41
508 2231 1.821936 CTCCTCCTGTGCTGGCTAG 59.178 63.158 0.00 0.00 0.00 3.42
582 2319 1.200948 CTCTACTGCTTGCTTTTGGGC 59.799 52.381 0.00 0.00 0.00 5.36
630 2368 1.291877 CCTTCCGCTCCTTGTTGACG 61.292 60.000 0.00 0.00 0.00 4.35
635 2373 2.742372 CTCCTTGTTGACGCCCGG 60.742 66.667 0.00 0.00 0.00 5.73
639 2377 4.243008 TTGTTGACGCCCGGCTCA 62.243 61.111 8.05 7.60 0.00 4.26
652 2395 3.071206 GCTCAGGCCCACGAGAGA 61.071 66.667 16.55 0.00 0.00 3.10
653 2396 3.074999 GCTCAGGCCCACGAGAGAG 62.075 68.421 16.55 6.67 0.00 3.20
658 2401 2.493973 GCCCACGAGAGAGAGCAG 59.506 66.667 0.00 0.00 0.00 4.24
659 2402 2.049185 GCCCACGAGAGAGAGCAGA 61.049 63.158 0.00 0.00 0.00 4.26
660 2403 2.003658 GCCCACGAGAGAGAGCAGAG 62.004 65.000 0.00 0.00 0.00 3.35
661 2404 1.433064 CCACGAGAGAGAGCAGAGC 59.567 63.158 0.00 0.00 0.00 4.09
662 2405 1.311651 CCACGAGAGAGAGCAGAGCA 61.312 60.000 0.00 0.00 0.00 4.26
663 2406 0.099259 CACGAGAGAGAGCAGAGCAG 59.901 60.000 0.00 0.00 0.00 4.24
664 2407 0.035534 ACGAGAGAGAGCAGAGCAGA 60.036 55.000 0.00 0.00 0.00 4.26
665 2408 0.659427 CGAGAGAGAGCAGAGCAGAG 59.341 60.000 0.00 0.00 0.00 3.35
666 2409 0.383231 GAGAGAGAGCAGAGCAGAGC 59.617 60.000 0.00 0.00 0.00 4.09
667 2410 1.064621 GAGAGAGCAGAGCAGAGCG 59.935 63.158 0.00 0.00 35.48 5.03
668 2411 1.375853 GAGAGAGCAGAGCAGAGCGA 61.376 60.000 0.00 0.00 35.48 4.93
669 2412 1.064621 GAGAGCAGAGCAGAGCGAG 59.935 63.158 0.00 0.00 35.48 5.03
670 2413 2.583045 GAGCAGAGCAGAGCGAGC 60.583 66.667 0.00 0.00 35.48 5.03
699 2442 2.757099 CGGCGGGGTAGTACCACT 60.757 66.667 19.47 0.00 40.33 4.00
700 2443 2.897972 GGCGGGGTAGTACCACTG 59.102 66.667 19.47 13.44 40.33 3.66
701 2444 2.728435 GGCGGGGTAGTACCACTGG 61.728 68.421 19.47 6.08 40.33 4.00
702 2445 2.728435 GCGGGGTAGTACCACTGGG 61.728 68.421 19.47 5.35 40.33 4.45
723 2466 1.524002 CCACTGCATCATCCGTCCT 59.476 57.895 0.00 0.00 0.00 3.85
724 2467 0.531532 CCACTGCATCATCCGTCCTC 60.532 60.000 0.00 0.00 0.00 3.71
726 2469 1.300465 CTGCATCATCCGTCCTCCG 60.300 63.158 0.00 0.00 0.00 4.63
727 2470 2.021068 CTGCATCATCCGTCCTCCGT 62.021 60.000 0.00 0.00 33.66 4.69
754 2501 0.793617 AGGACAGAGAAAGGGGGAGA 59.206 55.000 0.00 0.00 0.00 3.71
756 2503 1.273324 GGACAGAGAAAGGGGGAGAGA 60.273 57.143 0.00 0.00 0.00 3.10
757 2504 2.107366 GACAGAGAAAGGGGGAGAGAG 58.893 57.143 0.00 0.00 0.00 3.20
758 2505 1.719378 ACAGAGAAAGGGGGAGAGAGA 59.281 52.381 0.00 0.00 0.00 3.10
807 2569 1.823899 GCCATAAAGGACCGGGCTG 60.824 63.158 7.57 0.00 41.39 4.85
808 2570 1.823899 CCATAAAGGACCGGGCTGC 60.824 63.158 7.57 0.00 41.22 5.25
809 2571 2.180204 CATAAAGGACCGGGCTGCG 61.180 63.158 7.57 0.00 0.00 5.18
810 2572 3.400599 ATAAAGGACCGGGCTGCGG 62.401 63.158 7.57 0.36 0.00 5.69
933 2695 0.721718 CGCTAAAGCTCGGTCCTTTG 59.278 55.000 0.00 0.00 39.32 2.77
975 2737 4.643387 GAACTGGTGGTGGCGCCT 62.643 66.667 29.70 2.62 38.35 5.52
996 2764 3.041940 CTTGGTCGTGTGGGCGTC 61.042 66.667 0.00 0.00 0.00 5.19
1057 2831 1.075698 AGTTCTTCGACTCCAGGGAGA 59.924 52.381 21.73 0.00 44.53 3.71
1620 3400 2.678934 TCCACCCCGGAGAAGTCG 60.679 66.667 0.73 0.00 39.64 4.18
1621 3401 2.678934 CCACCCCGGAGAAGTCGA 60.679 66.667 0.73 0.00 36.56 4.20
1622 3402 2.711922 CCACCCCGGAGAAGTCGAG 61.712 68.421 0.73 0.00 36.56 4.04
1623 3403 2.362632 ACCCCGGAGAAGTCGAGG 60.363 66.667 0.73 0.00 0.00 4.63
1624 3404 3.839432 CCCCGGAGAAGTCGAGGC 61.839 72.222 0.73 0.00 0.00 4.70
1625 3405 4.194720 CCCGGAGAAGTCGAGGCG 62.195 72.222 0.73 0.00 0.00 5.52
1626 3406 4.856607 CCGGAGAAGTCGAGGCGC 62.857 72.222 0.00 0.00 0.00 6.53
1627 3407 4.856607 CGGAGAAGTCGAGGCGCC 62.857 72.222 21.89 21.89 0.00 6.53
1833 3625 1.002502 GGTGTACAGGGGCCAAGAC 60.003 63.158 4.39 0.00 0.00 3.01
2037 3829 0.034059 AACTGGCTCCTGTCAACTCG 59.966 55.000 0.00 0.00 0.00 4.18
2206 3998 1.618343 GGTCCAAAAATGGGGTGAGTG 59.382 52.381 0.00 0.00 0.00 3.51
2212 4004 0.188342 AAATGGGGTGAGTGGCAGTT 59.812 50.000 0.00 0.00 0.00 3.16
2214 4006 1.136329 ATGGGGTGAGTGGCAGTTCT 61.136 55.000 0.00 0.00 0.00 3.01
2217 4009 0.326264 GGGTGAGTGGCAGTTCTGAT 59.674 55.000 3.84 0.00 0.00 2.90
2225 4017 2.996621 GTGGCAGTTCTGATAGTGTGTC 59.003 50.000 3.84 0.00 0.00 3.67
2451 4246 1.475751 CCTGCCGCTCTTCACCATATT 60.476 52.381 0.00 0.00 0.00 1.28
2456 4251 2.744202 CCGCTCTTCACCATATTATGCC 59.256 50.000 0.00 0.00 0.00 4.40
2534 4329 5.821204 AGTGACAATTATTTTATCAGCGGC 58.179 37.500 0.00 0.00 0.00 6.53
2543 4338 0.875908 TTATCAGCGGCTGCATCGAC 60.876 55.000 24.78 5.24 46.23 4.20
2597 4392 2.694109 CCTAGTGGTAGACTGGGCTAAC 59.306 54.545 0.00 0.00 45.58 2.34
2612 4407 5.126067 TGGGCTAACAGCAAAGAGATAATC 58.874 41.667 0.00 0.00 44.75 1.75
2665 4460 4.272748 GGTTCGCTTGAATATCCTTGTACC 59.727 45.833 0.00 0.00 33.37 3.34
2668 4463 4.161565 TCGCTTGAATATCCTTGTACCAGT 59.838 41.667 0.00 0.00 0.00 4.00
2702 4497 1.994916 CGGCCATTTGTTGATTCACC 58.005 50.000 2.24 0.00 0.00 4.02
2804 4599 5.449588 GCATCAGGTAATCATGAGTTGGTTG 60.450 44.000 0.00 0.00 37.78 3.77
2931 4726 0.037697 TGGTTTCACGAGGACATCCG 60.038 55.000 0.00 0.00 42.08 4.18
3052 4847 5.105997 GCAAGTCATCCTGTTTGAGCTTATT 60.106 40.000 0.00 0.00 0.00 1.40
3053 4848 6.094048 GCAAGTCATCCTGTTTGAGCTTATTA 59.906 38.462 0.00 0.00 0.00 0.98
3054 4849 7.201767 GCAAGTCATCCTGTTTGAGCTTATTAT 60.202 37.037 0.00 0.00 0.00 1.28
3055 4850 7.798596 AGTCATCCTGTTTGAGCTTATTATG 57.201 36.000 0.00 0.00 0.00 1.90
3057 4852 6.767902 GTCATCCTGTTTGAGCTTATTATGGA 59.232 38.462 0.00 0.00 0.00 3.41
3058 4853 7.446625 GTCATCCTGTTTGAGCTTATTATGGAT 59.553 37.037 0.00 0.00 0.00 3.41
3061 4856 7.801104 TCCTGTTTGAGCTTATTATGGATGTA 58.199 34.615 0.00 0.00 0.00 2.29
3062 4857 7.933577 TCCTGTTTGAGCTTATTATGGATGTAG 59.066 37.037 0.00 0.00 0.00 2.74
3063 4858 7.716998 CCTGTTTGAGCTTATTATGGATGTAGT 59.283 37.037 0.00 0.00 0.00 2.73
3064 4859 9.113838 CTGTTTGAGCTTATTATGGATGTAGTT 57.886 33.333 0.00 0.00 0.00 2.24
3065 4860 9.109393 TGTTTGAGCTTATTATGGATGTAGTTC 57.891 33.333 0.00 0.00 0.00 3.01
3066 4861 8.560374 GTTTGAGCTTATTATGGATGTAGTTCC 58.440 37.037 0.00 0.00 36.24 3.62
3067 4862 7.618019 TGAGCTTATTATGGATGTAGTTCCT 57.382 36.000 0.00 0.00 36.68 3.36
3068 4863 8.034313 TGAGCTTATTATGGATGTAGTTCCTT 57.966 34.615 0.00 0.00 36.68 3.36
3070 4865 7.227156 AGCTTATTATGGATGTAGTTCCTTGG 58.773 38.462 0.00 0.00 36.68 3.61
3081 4877 9.457436 GGATGTAGTTCCTTGGTTATTAGAAAA 57.543 33.333 0.00 0.00 32.68 2.29
3121 4918 7.946207 TCAGAGATTTTCATCTACGCTAATCT 58.054 34.615 0.00 0.00 40.14 2.40
3122 4919 8.417106 TCAGAGATTTTCATCTACGCTAATCTT 58.583 33.333 0.00 0.00 40.14 2.40
3158 4955 1.900245 TTTTCCCTGTTTACGCTCCC 58.100 50.000 0.00 0.00 0.00 4.30
3189 4986 6.660521 TCCTGATGAATAAACAAGAATGTGCT 59.339 34.615 0.00 0.00 40.46 4.40
3301 5099 6.618592 GCATGTGCTGTCGACAATATATTACC 60.619 42.308 20.49 0.01 38.21 2.85
3390 5188 8.884124 TCCAACTTCTAAGATTGAAATGGAAT 57.116 30.769 0.00 0.00 36.96 3.01
3391 5189 9.312904 TCCAACTTCTAAGATTGAAATGGAATT 57.687 29.630 0.00 0.00 36.96 2.17
3461 5259 5.360591 GGTATTCCTGTACTGTCAATGAGG 58.639 45.833 0.00 0.00 0.00 3.86
3469 5267 3.864789 ACTGTCAATGAGGGAACAGTT 57.135 42.857 1.36 0.00 35.22 3.16
3522 5324 6.218746 CCAGAATTTATAATGCTCCTTTGGC 58.781 40.000 0.00 0.00 0.00 4.52
3592 5394 4.155099 CACCTTACATTTACCATCGTTGCA 59.845 41.667 0.00 0.00 0.00 4.08
3602 5404 7.908827 TTTACCATCGTTGCATTAGAAGTTA 57.091 32.000 0.00 0.00 0.00 2.24
3650 5452 7.200434 ACCATCAACTCAGTGTTTAGGATAT 57.800 36.000 0.00 0.00 36.63 1.63
3699 5501 3.334583 TGAACTTGCTAGTAAGGCAGG 57.665 47.619 22.43 3.68 40.90 4.85
3719 5525 5.124936 GCAGGAAACTATTGTTAACCCGATT 59.875 40.000 2.48 0.00 40.21 3.34
3789 5598 9.283768 TCTTTTAATCTGCTGAAGTGTTCATTA 57.716 29.630 0.00 0.00 39.30 1.90
3795 5604 4.475028 TGCTGAAGTGTTCATTATTTGCG 58.525 39.130 0.00 0.00 39.30 4.85
3956 5765 0.957395 ATCCGTTGGCTGCACAAGAG 60.957 55.000 0.50 1.45 0.00 2.85
4168 5981 4.104102 ACACCATCTTCTTGTCTTGGGTTA 59.896 41.667 0.00 0.00 0.00 2.85
4169 5982 5.070001 CACCATCTTCTTGTCTTGGGTTAA 58.930 41.667 0.00 0.00 0.00 2.01
4223 6036 7.786943 TCACATTTCTATCTCCTATTCTCAGGT 59.213 37.037 0.00 0.00 36.99 4.00
4232 6045 6.407202 TCTCCTATTCTCAGGTTTACAAAGC 58.593 40.000 0.00 0.00 36.99 3.51
4277 6090 0.833287 CCCCAGACGGAGATCACATT 59.167 55.000 0.00 0.00 0.00 2.71
4289 6102 5.903138 CGGAGATCACATTATCTCTGCTAGC 60.903 48.000 8.10 8.10 46.87 3.42
4295 6108 3.504134 ACATTATCTCTGCTAGCGACGAT 59.496 43.478 10.77 12.96 0.00 3.73
4460 6273 3.136123 CTGGCCTGCAACATCCCG 61.136 66.667 3.32 0.00 0.00 5.14
4586 6399 1.402968 CCATCGGGCAATTTCACTCTG 59.597 52.381 0.00 0.00 0.00 3.35
4623 6436 2.377136 GAGTCTGCTCCAAGGGGAA 58.623 57.895 0.00 0.00 44.38 3.97
4662 6475 0.394762 GCATCTGGCATCCAACTCCA 60.395 55.000 0.00 0.00 43.97 3.86
4769 6582 1.264749 TAGTCACCGCAAGCTGGGAT 61.265 55.000 5.78 0.00 31.21 3.85
4846 6659 1.004185 CTTCTCGGCATTGCTTCATCG 60.004 52.381 8.82 3.27 0.00 3.84
4851 6664 1.031571 GGCATTGCTTCATCGGTGGA 61.032 55.000 8.82 0.00 0.00 4.02
4930 6778 5.069914 TCCAGATATACTGTTGCGGTACAAT 59.930 40.000 0.00 0.00 44.40 2.71
5017 6865 3.008517 TCCAAGATCCCGCCAGCA 61.009 61.111 0.00 0.00 0.00 4.41
5049 6909 0.912486 CCCTTGGGAAGAAGACGGAT 59.088 55.000 0.00 0.00 0.00 4.18
5052 6913 0.690192 TTGGGAAGAAGACGGATGCA 59.310 50.000 0.00 0.00 0.00 3.96
5074 6935 5.421277 CATTCCTTGGCTGAATTATGCAAA 58.579 37.500 0.00 0.00 30.16 3.68
5085 6946 6.405731 GCTGAATTATGCAAATCCTTGTGGTA 60.406 38.462 0.00 0.00 34.79 3.25
5095 6956 0.840722 CCTTGTGGTAGGGTCTGGGT 60.841 60.000 0.00 0.00 0.00 4.51
5124 6987 3.930848 GCCTCTTTGATGCCTTCATTTTG 59.069 43.478 0.00 0.00 33.34 2.44
5142 7005 2.815647 GCTGTTTCGGAGCCCTCG 60.816 66.667 0.00 0.00 0.00 4.63
5143 7006 2.125512 CTGTTTCGGAGCCCTCGG 60.126 66.667 0.00 0.00 0.00 4.63
5145 7008 1.601419 CTGTTTCGGAGCCCTCGGTA 61.601 60.000 3.29 0.00 0.00 4.02
5183 7047 7.405292 AGGAGAGGATGAACATATGTTTTTGA 58.595 34.615 21.63 7.60 38.56 2.69
5252 7116 2.918276 CGGGGAGGTAGCTAGGGC 60.918 72.222 0.00 0.00 39.06 5.19
5269 7133 0.533755 GGCTCGATGTTGAGGATGGG 60.534 60.000 0.00 0.00 36.47 4.00
5279 7143 1.521764 TGAGGATGGGGTGCACATAT 58.478 50.000 20.43 9.28 0.00 1.78
5312 7176 8.815189 TCATTTCATTTGTTGTTACATGTTGTG 58.185 29.630 2.30 0.00 33.44 3.33
5313 7177 8.602328 CATTTCATTTGTTGTTACATGTTGTGT 58.398 29.630 2.30 0.00 44.95 3.72
5314 7178 7.517343 TTCATTTGTTGTTACATGTTGTGTG 57.483 32.000 2.30 0.00 42.24 3.82
5315 7179 6.625362 TCATTTGTTGTTACATGTTGTGTGT 58.375 32.000 2.30 0.00 42.24 3.72
5316 7180 6.529477 TCATTTGTTGTTACATGTTGTGTGTG 59.471 34.615 2.30 0.00 42.24 3.82
5317 7181 5.378292 TTGTTGTTACATGTTGTGTGTGT 57.622 34.783 2.30 0.00 42.24 3.72
5318 7182 4.727475 TGTTGTTACATGTTGTGTGTGTG 58.273 39.130 2.30 0.00 42.24 3.82
5319 7183 4.455877 TGTTGTTACATGTTGTGTGTGTGA 59.544 37.500 2.30 0.00 42.24 3.58
5320 7184 4.873768 TGTTACATGTTGTGTGTGTGAG 57.126 40.909 2.30 0.00 42.24 3.51
5389 7257 1.675641 GAGGTGTGGTGGACATGGC 60.676 63.158 0.00 0.00 36.78 4.40
5488 7427 4.175962 CTCCAGGGGTATGGTTATGGTAT 58.824 47.826 0.00 0.00 41.43 2.73
5489 7428 3.913799 TCCAGGGGTATGGTTATGGTATG 59.086 47.826 0.00 0.00 41.43 2.39
5490 7429 3.010138 CCAGGGGTATGGTTATGGTATGG 59.990 52.174 0.00 0.00 35.47 2.74
5524 7463 5.277974 GCTCATCTATCTCTCACTCACTCAC 60.278 48.000 0.00 0.00 0.00 3.51
5525 7464 6.000246 TCATCTATCTCTCACTCACTCACT 58.000 41.667 0.00 0.00 0.00 3.41
5526 7465 6.054941 TCATCTATCTCTCACTCACTCACTC 58.945 44.000 0.00 0.00 0.00 3.51
5527 7466 5.428184 TCTATCTCTCACTCACTCACTCA 57.572 43.478 0.00 0.00 0.00 3.41
5602 7547 1.552337 TGAGTGCTCAGATCTTGACCC 59.448 52.381 0.00 0.00 34.14 4.46
5607 7552 3.823304 GTGCTCAGATCTTGACCCTTTTT 59.177 43.478 0.00 0.00 0.00 1.94
5619 7564 3.017442 GACCCTTTTTACCTCCTGCATC 58.983 50.000 0.00 0.00 0.00 3.91
5651 7596 5.975988 TGCCCCTCTCTCACTTATTATTT 57.024 39.130 0.00 0.00 0.00 1.40
5652 7597 5.684704 TGCCCCTCTCTCACTTATTATTTG 58.315 41.667 0.00 0.00 0.00 2.32
5653 7598 5.066593 GCCCCTCTCTCACTTATTATTTGG 58.933 45.833 0.00 0.00 0.00 3.28
5654 7599 5.066593 CCCCTCTCTCACTTATTATTTGGC 58.933 45.833 0.00 0.00 0.00 4.52
5655 7600 5.397899 CCCCTCTCTCACTTATTATTTGGCA 60.398 44.000 0.00 0.00 0.00 4.92
5656 7601 5.762218 CCCTCTCTCACTTATTATTTGGCAG 59.238 44.000 0.00 0.00 0.00 4.85
5702 7647 1.762370 CCAAGGTGAAACTGGCCTTTT 59.238 47.619 3.32 3.03 40.31 2.27
5713 7658 1.886542 CTGGCCTTTTCAGTTACCACC 59.113 52.381 3.32 0.00 0.00 4.61
5716 7661 2.583143 GCCTTTTCAGTTACCACCAGT 58.417 47.619 0.00 0.00 0.00 4.00
5765 7710 3.896272 ACACCTCGGAAAACTTCTAGACT 59.104 43.478 0.00 0.00 0.00 3.24
5773 7718 5.758784 CGGAAAACTTCTAGACTTTGACCTT 59.241 40.000 0.00 0.00 0.00 3.50
5777 7722 6.487299 AACTTCTAGACTTTGACCTTCAGT 57.513 37.500 0.00 0.00 0.00 3.41
5795 7740 2.031333 CAGTTCTGAACCAAGAGCAAGC 60.031 50.000 16.48 0.00 30.38 4.01
5798 7743 0.879765 CTGAACCAAGAGCAAGCCTG 59.120 55.000 0.00 0.00 0.00 4.85
5800 7745 0.595095 GAACCAAGAGCAAGCCTGTG 59.405 55.000 0.00 0.00 0.00 3.66
5803 7748 0.820891 CCAAGAGCAAGCCTGTGTGT 60.821 55.000 0.00 0.00 0.00 3.72
5807 7752 0.815213 GAGCAAGCCTGTGTGTGTGA 60.815 55.000 0.00 0.00 0.00 3.58
5808 7753 0.179009 AGCAAGCCTGTGTGTGTGAT 60.179 50.000 0.00 0.00 0.00 3.06
5809 7754 1.072173 AGCAAGCCTGTGTGTGTGATA 59.928 47.619 0.00 0.00 0.00 2.15
5810 7755 1.466167 GCAAGCCTGTGTGTGTGATAG 59.534 52.381 0.00 0.00 0.00 2.08
5811 7756 1.466167 CAAGCCTGTGTGTGTGATAGC 59.534 52.381 0.00 0.00 0.00 2.97
5812 7757 0.036010 AGCCTGTGTGTGTGATAGCC 60.036 55.000 0.00 0.00 0.00 3.93
5813 7758 0.321564 GCCTGTGTGTGTGATAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
5814 7759 1.881925 GCCTGTGTGTGTGATAGCCAA 60.882 52.381 0.00 0.00 0.00 4.52
5815 7760 2.079158 CCTGTGTGTGTGATAGCCAAG 58.921 52.381 0.00 0.00 0.00 3.61
5816 7761 2.550855 CCTGTGTGTGTGATAGCCAAGT 60.551 50.000 0.00 0.00 0.00 3.16
5817 7762 3.306710 CCTGTGTGTGTGATAGCCAAGTA 60.307 47.826 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.316588 TGGCGTCAATGATAGAGAGTCTC 59.683 47.826 12.54 12.54 0.00 3.36
12 13 1.542328 CGGGGAATGGCGTCAATGATA 60.542 52.381 0.00 0.00 0.00 2.15
16 17 1.153168 CTCGGGGAATGGCGTCAAT 60.153 57.895 0.00 0.00 0.00 2.57
20 21 2.240162 GAAGACTCGGGGAATGGCGT 62.240 60.000 0.00 0.00 0.00 5.68
24 25 0.460284 CGTGGAAGACTCGGGGAATG 60.460 60.000 0.00 0.00 0.00 2.67
67 69 6.362283 GTGTGCCAAATGATGTTTTGTAGTAC 59.638 38.462 0.00 0.00 35.30 2.73
79 81 3.131577 GGTGATGATGTGTGCCAAATGAT 59.868 43.478 0.00 0.00 0.00 2.45
86 88 1.647545 CCACGGTGATGATGTGTGCC 61.648 60.000 10.28 0.00 31.75 5.01
100 102 2.360600 TTTTCGCCCATCCCACGG 60.361 61.111 0.00 0.00 0.00 4.94
102 104 1.673009 TCGTTTTCGCCCATCCCAC 60.673 57.895 0.00 0.00 43.73 4.61
103 105 1.673009 GTCGTTTTCGCCCATCCCA 60.673 57.895 0.00 0.00 43.73 4.37
142 144 4.810790 TGTTTCTTTCTCTCTCTAAGCCG 58.189 43.478 0.00 0.00 0.00 5.52
149 151 5.749109 TCTCGTGTTTGTTTCTTTCTCTCTC 59.251 40.000 0.00 0.00 0.00 3.20
150 152 5.520649 GTCTCGTGTTTGTTTCTTTCTCTCT 59.479 40.000 0.00 0.00 0.00 3.10
151 153 5.520649 AGTCTCGTGTTTGTTTCTTTCTCTC 59.479 40.000 0.00 0.00 0.00 3.20
152 154 5.420409 AGTCTCGTGTTTGTTTCTTTCTCT 58.580 37.500 0.00 0.00 0.00 3.10
250 262 8.826710 TGATGGTGAATAATTGTCTAATTCGAC 58.173 33.333 3.23 3.23 37.64 4.20
251 263 8.956533 TGATGGTGAATAATTGTCTAATTCGA 57.043 30.769 0.00 0.00 37.64 3.71
316 355 5.048013 CACCTTTTCTTCCTCCATGTTTACC 60.048 44.000 0.00 0.00 0.00 2.85
342 381 1.306226 CCTTCCCGTCTCCTCCCTT 60.306 63.158 0.00 0.00 0.00 3.95
353 392 3.474570 CCTCCTGCCTCCTTCCCG 61.475 72.222 0.00 0.00 0.00 5.14
404 2110 2.282603 TAAAAGCCGCACCCACCC 60.283 61.111 0.00 0.00 0.00 4.61
461 2173 2.763902 GGAGGGTTGGGGACTTGG 59.236 66.667 0.00 0.00 0.00 3.61
462 2174 1.852626 AGGGAGGGTTGGGGACTTG 60.853 63.158 0.00 0.00 0.00 3.16
463 2175 1.541620 GAGGGAGGGTTGGGGACTT 60.542 63.158 0.00 0.00 0.00 3.01
464 2176 2.125225 GAGGGAGGGTTGGGGACT 59.875 66.667 0.00 0.00 0.00 3.85
466 2178 1.869946 TAGGAGGGAGGGTTGGGGA 60.870 63.158 0.00 0.00 0.00 4.81
467 2179 1.693103 GTAGGAGGGAGGGTTGGGG 60.693 68.421 0.00 0.00 0.00 4.96
468 2180 1.693103 GGTAGGAGGGAGGGTTGGG 60.693 68.421 0.00 0.00 0.00 4.12
469 2181 0.691413 GAGGTAGGAGGGAGGGTTGG 60.691 65.000 0.00 0.00 0.00 3.77
470 2182 1.043673 CGAGGTAGGAGGGAGGGTTG 61.044 65.000 0.00 0.00 0.00 3.77
473 2185 2.522193 GCGAGGTAGGAGGGAGGG 60.522 72.222 0.00 0.00 0.00 4.30
474 2186 1.529713 GAGCGAGGTAGGAGGGAGG 60.530 68.421 0.00 0.00 0.00 4.30
475 2187 1.529713 GGAGCGAGGTAGGAGGGAG 60.530 68.421 0.00 0.00 0.00 4.30
476 2188 1.997256 GAGGAGCGAGGTAGGAGGGA 61.997 65.000 0.00 0.00 0.00 4.20
508 2231 0.249489 CCACGACCACCATAGCTAGC 60.249 60.000 6.62 6.62 0.00 3.42
509 2232 0.249489 GCCACGACCACCATAGCTAG 60.249 60.000 0.00 0.00 0.00 3.42
510 2233 1.682451 GGCCACGACCACCATAGCTA 61.682 60.000 0.00 0.00 0.00 3.32
511 2234 2.584608 GCCACGACCACCATAGCT 59.415 61.111 0.00 0.00 0.00 3.32
512 2235 2.513897 GGCCACGACCACCATAGC 60.514 66.667 0.00 0.00 0.00 2.97
513 2236 0.035439 AAAGGCCACGACCACCATAG 60.035 55.000 5.01 0.00 0.00 2.23
514 2237 0.402504 AAAAGGCCACGACCACCATA 59.597 50.000 5.01 0.00 0.00 2.74
515 2238 0.402504 TAAAAGGCCACGACCACCAT 59.597 50.000 5.01 0.00 0.00 3.55
516 2239 0.402504 ATAAAAGGCCACGACCACCA 59.597 50.000 5.01 0.00 0.00 4.17
517 2240 1.201414 CAATAAAAGGCCACGACCACC 59.799 52.381 5.01 0.00 0.00 4.61
518 2241 1.402325 GCAATAAAAGGCCACGACCAC 60.402 52.381 5.01 0.00 0.00 4.16
519 2242 0.885196 GCAATAAAAGGCCACGACCA 59.115 50.000 5.01 0.00 0.00 4.02
520 2243 3.713936 GCAATAAAAGGCCACGACC 57.286 52.632 5.01 0.00 0.00 4.79
635 2373 3.071206 TCTCTCGTGGGCCTGAGC 61.071 66.667 18.05 0.62 38.76 4.26
637 2375 1.379176 CTCTCTCTCGTGGGCCTGA 60.379 63.158 4.53 1.43 0.00 3.86
639 2377 2.757917 GCTCTCTCTCGTGGGCCT 60.758 66.667 4.53 0.00 0.00 5.19
641 2379 2.003658 CTCTGCTCTCTCTCGTGGGC 62.004 65.000 0.00 0.00 0.00 5.36
652 2395 3.067480 GCTCGCTCTGCTCTGCTCT 62.067 63.158 0.00 0.00 0.00 4.09
653 2396 2.583045 GCTCGCTCTGCTCTGCTC 60.583 66.667 0.00 0.00 0.00 4.26
727 2470 1.699634 CTTTCTCTGTCCTGTTGGGGA 59.300 52.381 0.00 0.00 35.33 4.81
754 2501 3.082701 GCCTCTGCCTGCCTCTCT 61.083 66.667 0.00 0.00 0.00 3.10
756 2503 3.400928 CAGCCTCTGCCTGCCTCT 61.401 66.667 0.00 0.00 38.69 3.69
975 2737 4.308458 CCCACACGACCAAGCCGA 62.308 66.667 0.00 0.00 0.00 5.54
1267 3041 1.965754 GCCAGGACGATCTCCAAGCT 61.966 60.000 12.08 0.00 42.46 3.74
1270 3044 1.612146 TGGCCAGGACGATCTCCAA 60.612 57.895 0.00 0.00 42.46 3.53
1271 3045 2.038813 TGGCCAGGACGATCTCCA 59.961 61.111 0.00 0.00 42.46 3.86
1611 3391 4.856607 CGGCGCCTCGACTTCTCC 62.857 72.222 26.68 0.00 29.68 3.71
1689 3481 3.429141 GCCTCGTCGTCGTCCTCA 61.429 66.667 1.33 0.00 38.33 3.86
1833 3625 3.136123 CCCTTGTGCGCCCTGATG 61.136 66.667 4.18 0.00 0.00 3.07
2037 3829 1.448717 GCTCTTGGTCCCTTCGCTC 60.449 63.158 0.00 0.00 0.00 5.03
2206 3998 3.516615 GAGACACACTATCAGAACTGCC 58.483 50.000 0.00 0.00 0.00 4.85
2217 4009 8.678541 TCCTTCAGGTACATGGAGACACACTA 62.679 46.154 17.45 0.00 39.03 2.74
2225 4017 5.144100 AGTAGATCCTTCAGGTACATGGAG 58.856 45.833 8.93 8.93 36.34 3.86
2451 4246 3.818210 ACAACAAACTTGATGTCGGCATA 59.182 39.130 0.51 0.00 39.57 3.14
2534 4329 1.635663 GAACCAACCCGTCGATGCAG 61.636 60.000 0.00 0.00 0.00 4.41
2543 4338 1.080839 CCAAATGCGAACCAACCCG 60.081 57.895 0.00 0.00 0.00 5.28
2546 4341 1.272212 ACATCCCAAATGCGAACCAAC 59.728 47.619 0.00 0.00 0.00 3.77
2597 4392 2.938451 TGCGGTGATTATCTCTTTGCTG 59.062 45.455 0.00 0.00 0.00 4.41
2612 4407 1.736645 CCGGTAACAGACTGCGGTG 60.737 63.158 0.80 0.00 32.45 4.94
2665 4460 2.604614 GCCGCTTGGTAAAAACAGACTG 60.605 50.000 0.00 0.00 34.16 3.51
2668 4463 0.955905 GGCCGCTTGGTAAAAACAGA 59.044 50.000 0.00 0.00 34.16 3.41
2702 4497 4.993584 ACCAGCAGAAATATAAGCATCTCG 59.006 41.667 0.00 0.00 0.00 4.04
2804 4599 6.619801 AGTACAACTCAAATCTCACAAACC 57.380 37.500 0.00 0.00 0.00 3.27
2902 4697 3.930229 CCTCGTGAAACCAAACGATATCA 59.070 43.478 3.12 0.00 46.70 2.15
2914 4709 2.074547 TTCGGATGTCCTCGTGAAAC 57.925 50.000 0.00 0.00 0.00 2.78
3052 4847 9.442062 TCTAATAACCAAGGAACTACATCCATA 57.558 33.333 0.00 0.00 42.27 2.74
3053 4848 8.331931 TCTAATAACCAAGGAACTACATCCAT 57.668 34.615 0.00 0.00 42.27 3.41
3054 4849 7.743116 TCTAATAACCAAGGAACTACATCCA 57.257 36.000 0.00 0.00 42.27 3.41
3055 4850 9.457436 TTTTCTAATAACCAAGGAACTACATCC 57.543 33.333 0.00 0.00 38.49 3.51
3081 4877 2.423892 TCTCTGAGCGAGCGTTATCTTT 59.576 45.455 0.00 0.00 39.70 2.52
3089 4885 1.633561 TGAAAATCTCTGAGCGAGCG 58.366 50.000 0.00 0.00 39.70 5.03
3090 4886 3.456280 AGATGAAAATCTCTGAGCGAGC 58.544 45.455 0.00 0.00 39.70 5.03
3091 4887 4.674662 CGTAGATGAAAATCTCTGAGCGAG 59.325 45.833 0.00 0.00 41.30 5.03
3092 4888 4.602006 CGTAGATGAAAATCTCTGAGCGA 58.398 43.478 0.00 0.00 32.36 4.93
3121 4918 6.609616 AGGGAAAATCAAGGAAACAACTGTAA 59.390 34.615 0.00 0.00 0.00 2.41
3122 4919 6.040391 CAGGGAAAATCAAGGAAACAACTGTA 59.960 38.462 0.00 0.00 0.00 2.74
3158 4955 4.137116 TGTTTATTCATCAGGACGGAGG 57.863 45.455 0.00 0.00 0.00 4.30
3259 5057 0.676466 TGCCACCTATTCAACGCCAG 60.676 55.000 0.00 0.00 0.00 4.85
3301 5099 9.281371 ACATCAACATGACAATGATCCTATTAG 57.719 33.333 0.00 0.00 37.24 1.73
3339 5137 1.160137 CTCCCGCCAAAACAGAAGAG 58.840 55.000 0.00 0.00 0.00 2.85
3340 5138 0.472471 ACTCCCGCCAAAACAGAAGA 59.528 50.000 0.00 0.00 0.00 2.87
3411 5209 9.994432 CACATTCAGAAATATAGAGTTTTCACC 57.006 33.333 0.00 0.00 34.91 4.02
3414 5212 9.178758 ACCCACATTCAGAAATATAGAGTTTTC 57.821 33.333 0.00 0.00 33.08 2.29
3568 5370 4.658071 CAACGATGGTAAATGTAAGGTGC 58.342 43.478 0.00 0.00 0.00 5.01
3699 5501 9.634163 AAAATCAATCGGGTTAACAATAGTTTC 57.366 29.630 8.10 0.00 39.15 2.78
3772 5581 4.556135 CGCAAATAATGAACACTTCAGCAG 59.444 41.667 0.00 0.00 43.98 4.24
3829 5638 5.701290 AGACGATTTTCTGTGTAAAGAAGGG 59.299 40.000 0.00 0.00 37.48 3.95
3940 5749 0.381801 AAACTCTTGTGCAGCCAACG 59.618 50.000 0.00 0.00 0.00 4.10
4168 5981 6.070995 TCAGGGTCACGAATACTATGAGTTTT 60.071 38.462 0.00 0.00 0.00 2.43
4169 5982 5.421056 TCAGGGTCACGAATACTATGAGTTT 59.579 40.000 0.00 0.00 0.00 2.66
4223 6036 4.681744 CAACTTGGCTTGAGCTTTGTAAA 58.318 39.130 2.66 0.00 41.70 2.01
4232 6045 1.870055 ATGCGGCAACTTGGCTTGAG 61.870 55.000 6.82 0.00 41.25 3.02
4277 6090 2.484651 GGAATCGTCGCTAGCAGAGATA 59.515 50.000 16.45 2.37 0.00 1.98
4295 6108 4.651962 TGATTCCACATGTAGATACGGGAA 59.348 41.667 12.42 12.42 37.35 3.97
4393 6206 1.300931 CACGGTATGGCGATGGAGG 60.301 63.158 0.00 0.00 0.00 4.30
4460 6273 1.195674 GAGACTTCTTGCCGCAAAGAC 59.804 52.381 7.33 3.46 35.92 3.01
4631 6444 2.688666 AGATGCTCCTCCGGCCAA 60.689 61.111 2.24 0.00 0.00 4.52
4769 6582 0.034186 GGAATGACCTGATGTGGCCA 60.034 55.000 0.00 0.00 35.41 5.36
4846 6659 0.035439 TCGCTTCTGGGAAATCCACC 60.035 55.000 1.22 0.00 41.46 4.61
4851 6664 1.450312 CGCCTCGCTTCTGGGAAAT 60.450 57.895 0.00 0.00 34.69 2.17
4930 6778 1.514678 GAAACCAGCCATGTGACGCA 61.515 55.000 0.00 0.00 0.00 5.24
5049 6909 3.181473 GCATAATTCAGCCAAGGAATGCA 60.181 43.478 0.00 0.00 35.28 3.96
5052 6913 5.680594 TTTGCATAATTCAGCCAAGGAAT 57.319 34.783 0.00 0.00 36.57 3.01
5074 6935 1.584724 CCAGACCCTACCACAAGGAT 58.415 55.000 0.00 0.00 39.15 3.24
5085 6946 1.923909 GCCTTGGTACCCAGACCCT 60.924 63.158 14.56 0.00 38.89 4.34
5095 6956 2.128771 GCATCAAAGAGGCCTTGGTA 57.871 50.000 6.77 0.00 32.93 3.25
5102 6964 3.881937 AAATGAAGGCATCAAAGAGGC 57.118 42.857 0.00 0.00 42.54 4.70
5118 6981 1.701704 GCTCCGAAACAGCCAAAATG 58.298 50.000 0.00 0.00 0.00 2.32
5131 6994 0.034186 TACTTTACCGAGGGCTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
5181 7045 0.471211 AGGGGAGTCGAAACTGGTCA 60.471 55.000 0.00 0.00 35.28 4.02
5183 7047 1.533469 CGAGGGGAGTCGAAACTGGT 61.533 60.000 0.00 0.00 42.85 4.00
5252 7116 0.833287 ACCCCATCCTCAACATCGAG 59.167 55.000 0.00 0.00 0.00 4.04
5254 7118 1.097547 GCACCCCATCCTCAACATCG 61.098 60.000 0.00 0.00 0.00 3.84
5258 7122 0.323725 ATGTGCACCCCATCCTCAAC 60.324 55.000 15.69 0.00 0.00 3.18
5269 7133 6.339730 TGAAATGAATCCAAATATGTGCACC 58.660 36.000 15.69 0.00 0.00 5.01
5279 7143 9.605275 TGTAACAACAAATGAAATGAATCCAAA 57.395 25.926 0.00 0.00 0.00 3.28
5312 7176 4.893424 ACAACACCATTAACTCACACAC 57.107 40.909 0.00 0.00 0.00 3.82
5313 7177 5.525745 CAGTACAACACCATTAACTCACACA 59.474 40.000 0.00 0.00 0.00 3.72
5314 7178 5.526111 ACAGTACAACACCATTAACTCACAC 59.474 40.000 0.00 0.00 0.00 3.82
5315 7179 5.525745 CACAGTACAACACCATTAACTCACA 59.474 40.000 0.00 0.00 0.00 3.58
5316 7180 5.560183 GCACAGTACAACACCATTAACTCAC 60.560 44.000 0.00 0.00 0.00 3.51
5317 7181 4.513692 GCACAGTACAACACCATTAACTCA 59.486 41.667 0.00 0.00 0.00 3.41
5318 7182 4.513692 TGCACAGTACAACACCATTAACTC 59.486 41.667 0.00 0.00 0.00 3.01
5319 7183 4.274950 GTGCACAGTACAACACCATTAACT 59.725 41.667 13.17 0.00 0.00 2.24
5320 7184 4.035792 TGTGCACAGTACAACACCATTAAC 59.964 41.667 17.42 0.00 31.98 2.01
5463 7395 0.696485 TAACCATACCCCTGGAGCCC 60.696 60.000 0.00 0.00 39.73 5.19
5464 7396 1.073923 CATAACCATACCCCTGGAGCC 59.926 57.143 0.00 0.00 39.73 4.70
5465 7397 1.073923 CCATAACCATACCCCTGGAGC 59.926 57.143 0.00 0.00 39.73 4.70
5466 7398 2.418669 ACCATAACCATACCCCTGGAG 58.581 52.381 0.00 0.00 39.73 3.86
5467 7399 2.598288 ACCATAACCATACCCCTGGA 57.402 50.000 0.00 0.00 39.73 3.86
5468 7400 3.010138 CCATACCATAACCATACCCCTGG 59.990 52.174 0.00 0.00 42.35 4.45
5469 7401 3.655777 ACCATACCATAACCATACCCCTG 59.344 47.826 0.00 0.00 0.00 4.45
5470 7402 3.655777 CACCATACCATAACCATACCCCT 59.344 47.826 0.00 0.00 0.00 4.79
5471 7403 3.245122 CCACCATACCATAACCATACCCC 60.245 52.174 0.00 0.00 0.00 4.95
5488 7427 0.327480 AGATGAGCCCCATACCACCA 60.327 55.000 0.00 0.00 35.17 4.17
5489 7428 1.729586 TAGATGAGCCCCATACCACC 58.270 55.000 0.00 0.00 35.17 4.61
5490 7429 3.177228 AGATAGATGAGCCCCATACCAC 58.823 50.000 0.00 0.00 35.17 4.16
5524 7463 0.252479 AGGAGACAGGCAAGCATGAG 59.748 55.000 14.06 0.00 0.00 2.90
5525 7464 0.694771 AAGGAGACAGGCAAGCATGA 59.305 50.000 14.06 0.00 0.00 3.07
5526 7465 1.093159 GAAGGAGACAGGCAAGCATG 58.907 55.000 5.03 5.03 0.00 4.06
5527 7466 0.990374 AGAAGGAGACAGGCAAGCAT 59.010 50.000 0.00 0.00 0.00 3.79
5602 7547 2.083774 TGCGATGCAGGAGGTAAAAAG 58.916 47.619 0.00 0.00 33.32 2.27
5607 7552 0.815213 GCAATGCGATGCAGGAGGTA 60.815 55.000 8.51 0.00 43.65 3.08
5651 7596 0.911053 TATCATCACTGCCACTGCCA 59.089 50.000 0.00 0.00 36.33 4.92
5652 7597 2.149578 GATATCATCACTGCCACTGCC 58.850 52.381 0.00 0.00 36.33 4.85
5653 7598 2.149578 GGATATCATCACTGCCACTGC 58.850 52.381 4.83 0.00 38.26 4.40
5654 7599 3.070590 TCAGGATATCATCACTGCCACTG 59.929 47.826 4.83 0.00 31.68 3.66
5655 7600 3.070734 GTCAGGATATCATCACTGCCACT 59.929 47.826 4.83 0.00 31.68 4.00
5656 7601 3.070734 AGTCAGGATATCATCACTGCCAC 59.929 47.826 4.83 0.00 31.68 5.01
5702 7647 4.733165 AGTACAGTACTGGTGGTAACTGA 58.267 43.478 26.12 0.00 37.69 3.41
5713 7658 2.993899 CGGCCAAGAAAGTACAGTACTG 59.006 50.000 21.44 21.44 39.39 2.74
5716 7661 2.868839 GCACGGCCAAGAAAGTACAGTA 60.869 50.000 2.24 0.00 0.00 2.74
5773 7718 3.470709 CTTGCTCTTGGTTCAGAACTGA 58.529 45.455 13.13 8.24 37.91 3.41
5777 7722 1.143684 AGGCTTGCTCTTGGTTCAGAA 59.856 47.619 0.00 0.00 0.00 3.02
5795 7740 2.079158 CTTGGCTATCACACACACAGG 58.921 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.