Multiple sequence alignment - TraesCS4B01G358500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G358500 chr4B 100.000 3375 0 0 1 3375 649223957 649220583 0.000000e+00 6233.0
1 TraesCS4B01G358500 chr4B 90.412 1554 106 25 810 2341 648572369 648573901 0.000000e+00 2004.0
2 TraesCS4B01G358500 chr4B 95.483 642 29 0 994 1635 648913882 648913241 0.000000e+00 1026.0
3 TraesCS4B01G358500 chr4B 91.882 542 42 2 1000 1540 648695632 648695092 0.000000e+00 756.0
4 TraesCS4B01G358500 chr4B 89.844 384 39 0 1 384 636137295 636136912 8.410000e-136 494.0
5 TraesCS4B01G358500 chr4B 88.462 416 17 7 383 795 649229514 649229127 1.100000e-129 473.0
6 TraesCS4B01G358500 chr4B 89.974 379 15 11 1572 1950 648695104 648694749 5.100000e-128 468.0
7 TraesCS4B01G358500 chr4B 96.169 261 10 0 1676 1936 648913166 648912906 8.650000e-116 427.0
8 TraesCS4B01G358500 chr4B 90.102 293 10 13 2066 2347 648912873 648912589 2.480000e-96 363.0
9 TraesCS4B01G358500 chr4B 93.607 219 9 3 2494 2708 648573972 648574189 4.200000e-84 322.0
10 TraesCS4B01G358500 chr4B 85.938 192 10 7 2715 2890 648574565 648574755 4.450000e-44 189.0
11 TraesCS4B01G358500 chr4B 86.061 165 13 4 2352 2509 648912620 648912459 5.790000e-38 169.0
12 TraesCS4B01G358500 chr4B 91.549 71 3 1 2376 2443 648573900 648573970 9.970000e-16 95.3
13 TraesCS4B01G358500 chr4B 86.458 96 2 4 2336 2420 648694509 648694414 9.970000e-16 95.3
14 TraesCS4B01G358500 chr4D 90.486 1997 95 31 383 2339 503508148 503506207 0.000000e+00 2547.0
15 TraesCS4B01G358500 chr4D 87.153 1082 75 27 2336 3373 503506243 503505182 0.000000e+00 1170.0
16 TraesCS4B01G358500 chr4D 88.942 841 55 15 810 1632 503450618 503451438 0.000000e+00 1003.0
17 TraesCS4B01G358500 chr4D 91.096 584 46 5 995 1576 503498468 503499047 0.000000e+00 785.0
18 TraesCS4B01G358500 chr4D 93.460 367 16 7 1570 1936 503499350 503499708 3.830000e-149 538.0
19 TraesCS4B01G358500 chr4D 93.863 277 12 2 1676 1947 503451515 503451791 2.420000e-111 412.0
20 TraesCS4B01G358500 chr4D 86.141 368 33 12 2146 2509 503451950 503452303 6.830000e-102 381.0
21 TraesCS4B01G358500 chr4D 94.819 193 10 0 2147 2339 503499827 503500019 5.470000e-78 302.0
22 TraesCS4B01G358500 chr4D 93.421 152 10 0 1 152 492038875 492038724 3.390000e-55 226.0
23 TraesCS4B01G358500 chr4D 85.000 120 11 4 2394 2507 503500043 503500161 7.650000e-22 115.0
24 TraesCS4B01G358500 chr5A 90.992 1432 69 22 385 1800 687937969 687936582 0.000000e+00 1875.0
25 TraesCS4B01G358500 chr5A 93.119 683 39 4 957 1632 687873505 687874186 0.000000e+00 994.0
26 TraesCS4B01G358500 chr5A 81.277 1159 72 60 1797 2877 687936491 687935400 0.000000e+00 804.0
27 TraesCS4B01G358500 chr5A 96.198 263 10 0 1676 1938 687874274 687874536 6.690000e-117 431.0
28 TraesCS4B01G358500 chr5A 82.556 493 32 27 2037 2509 687874590 687875048 5.280000e-103 385.0
29 TraesCS4B01G358500 chr6D 93.490 384 25 0 1 384 97586506 97586889 3.780000e-159 571.0
30 TraesCS4B01G358500 chr6D 93.989 183 8 2 2146 2328 17447558 17447379 1.190000e-69 274.0
31 TraesCS4B01G358500 chr3D 92.727 385 28 0 1 385 350583140 350582756 1.060000e-154 556.0
32 TraesCS4B01G358500 chr6A 91.688 385 32 0 1 385 230690591 230690207 4.960000e-148 534.0
33 TraesCS4B01G358500 chr2D 91.146 384 32 2 1 384 158247468 158247087 1.390000e-143 520.0
34 TraesCS4B01G358500 chr3A 89.844 384 39 0 1 384 458189565 458189182 8.410000e-136 494.0
35 TraesCS4B01G358500 chr3A 89.844 384 39 0 1 384 568530631 568530248 8.410000e-136 494.0
36 TraesCS4B01G358500 chr5D 95.738 305 13 0 80 384 342525989 342525685 3.030000e-135 492.0
37 TraesCS4B01G358500 chr1B 95.082 305 15 0 80 384 305284567 305284871 6.550000e-132 481.0
38 TraesCS4B01G358500 chr1B 86.280 379 39 8 888 1255 280756461 280756085 1.890000e-107 399.0
39 TraesCS4B01G358500 chr7D 94.850 233 12 0 1710 1942 569233163 569232931 6.880000e-97 364.0
40 TraesCS4B01G358500 chr7D 92.896 183 10 2 2146 2328 569232782 569232603 2.580000e-66 263.0
41 TraesCS4B01G358500 chr4A 92.763 152 11 0 1 152 100954206 100954357 1.580000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G358500 chr4B 649220583 649223957 3374 True 6233.000000 6233 100.000000 1 3375 1 chr4B.!!$R2 3374
1 TraesCS4B01G358500 chr4B 648572369 648574755 2386 False 652.575000 2004 90.376500 810 2890 4 chr4B.!!$F1 2080
2 TraesCS4B01G358500 chr4B 648912459 648913882 1423 True 496.250000 1026 91.953750 994 2509 4 chr4B.!!$R5 1515
3 TraesCS4B01G358500 chr4B 648694414 648695632 1218 True 439.766667 756 89.438000 1000 2420 3 chr4B.!!$R4 1420
4 TraesCS4B01G358500 chr4D 503505182 503508148 2966 True 1858.500000 2547 88.819500 383 3373 2 chr4D.!!$R2 2990
5 TraesCS4B01G358500 chr4D 503450618 503452303 1685 False 598.666667 1003 89.648667 810 2509 3 chr4D.!!$F1 1699
6 TraesCS4B01G358500 chr4D 503498468 503500161 1693 False 435.000000 785 91.093750 995 2507 4 chr4D.!!$F2 1512
7 TraesCS4B01G358500 chr5A 687935400 687937969 2569 True 1339.500000 1875 86.134500 385 2877 2 chr5A.!!$R1 2492
8 TraesCS4B01G358500 chr5A 687873505 687875048 1543 False 603.333333 994 90.624333 957 2509 3 chr5A.!!$F1 1552
9 TraesCS4B01G358500 chr7D 569232603 569233163 560 True 313.500000 364 93.873000 1710 2328 2 chr7D.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.030101 CGGGCGTCACACAAAAATGT 59.970 50.0 0.00 0.0 0.0 2.71 F
1437 1492 0.036306 CCTTCGCCACCAACTACCTT 59.964 55.0 0.00 0.0 0.0 3.50 F
2315 2957 0.462581 GGACATGATCTGCGCCTCAA 60.463 55.0 4.18 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1565 0.109873 GACGACACGTTCACGATCCT 60.110 55.000 6.30 0.0 41.37 3.24 R
2329 2971 0.107993 TTGAGGCGCAGATCTTCCTG 60.108 55.000 10.83 0.0 37.23 3.86 R
3122 4279 1.140161 CGTCGGCTTGAATCCCGTA 59.860 57.895 4.70 0.0 44.63 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.463505 CGCTACACGCTTGGTCAG 58.536 61.111 0.00 0.00 36.13 3.51
23 24 2.730672 CGCTACACGCTTGGTCAGC 61.731 63.158 0.00 0.00 46.31 4.26
30 31 2.050985 GCTTGGTCAGCGTTGCAC 60.051 61.111 0.00 0.00 39.29 4.57
31 32 2.639286 CTTGGTCAGCGTTGCACC 59.361 61.111 11.90 11.90 0.00 5.01
32 33 2.904866 TTGGTCAGCGTTGCACCC 60.905 61.111 14.77 6.88 0.00 4.61
33 34 4.947147 TGGTCAGCGTTGCACCCC 62.947 66.667 14.77 4.86 0.00 4.95
34 35 4.947147 GGTCAGCGTTGCACCCCA 62.947 66.667 8.87 0.00 0.00 4.96
35 36 3.357079 GTCAGCGTTGCACCCCAG 61.357 66.667 0.00 0.00 0.00 4.45
36 37 3.555324 TCAGCGTTGCACCCCAGA 61.555 61.111 0.00 0.00 0.00 3.86
37 38 3.357079 CAGCGTTGCACCCCAGAC 61.357 66.667 0.00 0.00 0.00 3.51
38 39 3.560251 AGCGTTGCACCCCAGACT 61.560 61.111 0.00 0.00 0.00 3.24
39 40 2.214216 AGCGTTGCACCCCAGACTA 61.214 57.895 0.00 0.00 0.00 2.59
40 41 2.033194 GCGTTGCACCCCAGACTAC 61.033 63.158 0.00 0.00 0.00 2.73
41 42 1.375523 CGTTGCACCCCAGACTACC 60.376 63.158 0.00 0.00 0.00 3.18
42 43 1.827399 CGTTGCACCCCAGACTACCT 61.827 60.000 0.00 0.00 0.00 3.08
43 44 1.272807 GTTGCACCCCAGACTACCTA 58.727 55.000 0.00 0.00 0.00 3.08
44 45 1.626825 GTTGCACCCCAGACTACCTAA 59.373 52.381 0.00 0.00 0.00 2.69
45 46 2.032965 TGCACCCCAGACTACCTAAA 57.967 50.000 0.00 0.00 0.00 1.85
46 47 2.340731 TGCACCCCAGACTACCTAAAA 58.659 47.619 0.00 0.00 0.00 1.52
47 48 2.712087 TGCACCCCAGACTACCTAAAAA 59.288 45.455 0.00 0.00 0.00 1.94
48 49 3.332485 TGCACCCCAGACTACCTAAAAAT 59.668 43.478 0.00 0.00 0.00 1.82
49 50 4.202631 TGCACCCCAGACTACCTAAAAATT 60.203 41.667 0.00 0.00 0.00 1.82
50 51 4.157840 GCACCCCAGACTACCTAAAAATTG 59.842 45.833 0.00 0.00 0.00 2.32
51 52 4.157840 CACCCCAGACTACCTAAAAATTGC 59.842 45.833 0.00 0.00 0.00 3.56
52 53 4.044191 ACCCCAGACTACCTAAAAATTGCT 59.956 41.667 0.00 0.00 0.00 3.91
53 54 5.252164 ACCCCAGACTACCTAAAAATTGCTA 59.748 40.000 0.00 0.00 0.00 3.49
54 55 6.184789 CCCCAGACTACCTAAAAATTGCTAA 58.815 40.000 0.00 0.00 0.00 3.09
55 56 6.318900 CCCCAGACTACCTAAAAATTGCTAAG 59.681 42.308 0.00 0.00 0.00 2.18
56 57 6.884836 CCCAGACTACCTAAAAATTGCTAAGT 59.115 38.462 0.00 0.00 0.00 2.24
57 58 7.065923 CCCAGACTACCTAAAAATTGCTAAGTC 59.934 40.741 0.00 0.00 0.00 3.01
58 59 7.606456 CCAGACTACCTAAAAATTGCTAAGTCA 59.394 37.037 0.00 0.00 34.64 3.41
59 60 8.999431 CAGACTACCTAAAAATTGCTAAGTCAA 58.001 33.333 0.00 0.00 34.64 3.18
60 61 9.740710 AGACTACCTAAAAATTGCTAAGTCAAT 57.259 29.630 0.00 0.00 38.23 2.57
61 62 9.774742 GACTACCTAAAAATTGCTAAGTCAATG 57.225 33.333 0.00 0.00 36.83 2.82
62 63 9.297037 ACTACCTAAAAATTGCTAAGTCAATGT 57.703 29.630 0.00 0.00 36.83 2.71
63 64 9.559958 CTACCTAAAAATTGCTAAGTCAATGTG 57.440 33.333 0.00 0.00 36.83 3.21
64 65 6.868339 ACCTAAAAATTGCTAAGTCAATGTGC 59.132 34.615 0.00 0.00 36.83 4.57
65 66 6.867816 CCTAAAAATTGCTAAGTCAATGTGCA 59.132 34.615 0.00 0.00 36.83 4.57
66 67 6.774354 AAAAATTGCTAAGTCAATGTGCAG 57.226 33.333 0.00 0.00 36.83 4.41
67 68 5.710513 AAATTGCTAAGTCAATGTGCAGA 57.289 34.783 0.00 0.00 36.83 4.26
68 69 4.959596 ATTGCTAAGTCAATGTGCAGAG 57.040 40.909 0.00 0.00 35.52 3.35
69 70 2.079158 TGCTAAGTCAATGTGCAGAGC 58.921 47.619 0.00 0.00 0.00 4.09
70 71 1.399791 GCTAAGTCAATGTGCAGAGCC 59.600 52.381 0.00 0.00 0.00 4.70
71 72 2.938756 GCTAAGTCAATGTGCAGAGCCT 60.939 50.000 0.00 0.00 0.00 4.58
72 73 3.679917 GCTAAGTCAATGTGCAGAGCCTA 60.680 47.826 0.00 0.00 0.00 3.93
73 74 3.423539 AAGTCAATGTGCAGAGCCTAA 57.576 42.857 0.00 0.00 0.00 2.69
74 75 3.423539 AGTCAATGTGCAGAGCCTAAA 57.576 42.857 0.00 0.00 0.00 1.85
75 76 3.754965 AGTCAATGTGCAGAGCCTAAAA 58.245 40.909 0.00 0.00 0.00 1.52
76 77 3.755378 AGTCAATGTGCAGAGCCTAAAAG 59.245 43.478 0.00 0.00 0.00 2.27
77 78 2.489329 TCAATGTGCAGAGCCTAAAAGC 59.511 45.455 0.00 0.00 0.00 3.51
79 80 3.634397 ATGTGCAGAGCCTAAAAGCTA 57.366 42.857 0.00 0.00 45.15 3.32
80 81 2.977914 TGTGCAGAGCCTAAAAGCTAG 58.022 47.619 0.00 0.00 45.15 3.42
81 82 2.284190 GTGCAGAGCCTAAAAGCTAGG 58.716 52.381 0.00 0.00 45.15 3.02
93 94 2.496817 GCTAGGCGCTGCACTAGT 59.503 61.111 21.78 0.00 39.07 2.57
94 95 1.880340 GCTAGGCGCTGCACTAGTG 60.880 63.158 18.93 18.93 39.07 2.74
95 96 1.227089 CTAGGCGCTGCACTAGTGG 60.227 63.158 23.95 9.71 37.39 4.00
96 97 1.949847 CTAGGCGCTGCACTAGTGGT 61.950 60.000 23.95 0.00 37.39 4.16
97 98 1.541310 TAGGCGCTGCACTAGTGGTT 61.541 55.000 23.95 3.73 37.39 3.67
98 99 2.680913 GGCGCTGCACTAGTGGTTG 61.681 63.158 23.95 6.99 37.39 3.77
99 100 2.863153 CGCTGCACTAGTGGTTGC 59.137 61.111 23.95 10.41 33.19 4.17
100 101 1.960763 CGCTGCACTAGTGGTTGCA 60.961 57.895 23.95 14.47 33.19 4.08
101 102 1.576421 GCTGCACTAGTGGTTGCAC 59.424 57.895 23.95 6.97 32.03 4.57
102 103 0.886490 GCTGCACTAGTGGTTGCACT 60.886 55.000 23.95 0.00 39.08 4.40
103 104 1.608025 GCTGCACTAGTGGTTGCACTA 60.608 52.381 23.95 0.00 36.68 2.74
104 105 2.069273 CTGCACTAGTGGTTGCACTAC 58.931 52.381 23.95 4.83 36.68 2.73
105 106 1.414550 TGCACTAGTGGTTGCACTACA 59.585 47.619 23.95 7.41 36.68 2.74
106 107 2.158885 TGCACTAGTGGTTGCACTACAA 60.159 45.455 23.95 0.00 36.68 2.41
107 108 2.875933 GCACTAGTGGTTGCACTACAAA 59.124 45.455 23.95 0.00 40.82 2.83
108 109 3.314080 GCACTAGTGGTTGCACTACAAAA 59.686 43.478 23.95 0.00 40.82 2.44
109 110 4.023193 GCACTAGTGGTTGCACTACAAAAT 60.023 41.667 23.95 0.00 40.82 1.82
110 111 5.451908 CACTAGTGGTTGCACTACAAAATG 58.548 41.667 15.49 0.00 40.82 2.32
111 112 5.238432 CACTAGTGGTTGCACTACAAAATGA 59.762 40.000 15.49 0.00 40.82 2.57
112 113 5.825679 ACTAGTGGTTGCACTACAAAATGAA 59.174 36.000 0.00 0.00 40.82 2.57
113 114 5.186996 AGTGGTTGCACTACAAAATGAAG 57.813 39.130 0.00 0.00 40.82 3.02
114 115 3.735746 GTGGTTGCACTACAAAATGAAGC 59.264 43.478 0.00 0.00 40.82 3.86
115 116 3.382865 TGGTTGCACTACAAAATGAAGCA 59.617 39.130 0.00 0.00 40.82 3.91
116 117 4.142071 TGGTTGCACTACAAAATGAAGCAA 60.142 37.500 0.00 0.00 40.82 3.91
118 119 3.976169 TGCACTACAAAATGAAGCAACC 58.024 40.909 0.00 0.00 0.00 3.77
119 120 3.382865 TGCACTACAAAATGAAGCAACCA 59.617 39.130 0.00 0.00 0.00 3.67
120 121 3.735746 GCACTACAAAATGAAGCAACCAC 59.264 43.478 0.00 0.00 0.00 4.16
121 122 4.499696 GCACTACAAAATGAAGCAACCACT 60.500 41.667 0.00 0.00 0.00 4.00
122 123 5.278266 GCACTACAAAATGAAGCAACCACTA 60.278 40.000 0.00 0.00 0.00 2.74
123 124 6.373779 CACTACAAAATGAAGCAACCACTAG 58.626 40.000 0.00 0.00 0.00 2.57
124 125 6.017109 CACTACAAAATGAAGCAACCACTAGT 60.017 38.462 0.00 0.00 0.00 2.57
125 126 5.186996 ACAAAATGAAGCAACCACTAGTG 57.813 39.130 16.34 16.34 0.00 2.74
126 127 3.923017 AAATGAAGCAACCACTAGTGC 57.077 42.857 17.86 6.14 0.00 4.40
127 128 2.566833 ATGAAGCAACCACTAGTGCA 57.433 45.000 17.86 8.36 0.00 4.57
128 129 2.340210 TGAAGCAACCACTAGTGCAA 57.660 45.000 17.86 0.00 0.00 4.08
129 130 1.946768 TGAAGCAACCACTAGTGCAAC 59.053 47.619 17.86 6.35 0.00 4.17
130 131 0.944386 AAGCAACCACTAGTGCAACG 59.056 50.000 17.86 6.34 45.86 4.10
131 132 0.179056 AGCAACCACTAGTGCAACGT 60.179 50.000 17.86 7.01 45.86 3.99
132 133 0.234884 GCAACCACTAGTGCAACGTC 59.765 55.000 17.86 0.35 45.86 4.34
133 134 1.865865 CAACCACTAGTGCAACGTCT 58.134 50.000 17.86 0.00 45.86 4.18
134 135 2.864882 GCAACCACTAGTGCAACGTCTA 60.865 50.000 17.86 0.00 45.86 2.59
135 136 2.987149 CAACCACTAGTGCAACGTCTAG 59.013 50.000 17.86 7.38 45.86 2.43
136 137 2.511659 ACCACTAGTGCAACGTCTAGA 58.488 47.619 17.86 0.00 45.86 2.43
137 138 2.889045 ACCACTAGTGCAACGTCTAGAA 59.111 45.455 17.86 0.00 45.86 2.10
138 139 3.057456 ACCACTAGTGCAACGTCTAGAAG 60.057 47.826 17.86 3.94 45.86 2.85
139 140 2.917971 CACTAGTGCAACGTCTAGAAGC 59.082 50.000 10.54 3.46 45.86 3.86
140 141 2.820787 ACTAGTGCAACGTCTAGAAGCT 59.179 45.455 14.21 0.00 45.86 3.74
141 142 4.008330 ACTAGTGCAACGTCTAGAAGCTA 58.992 43.478 14.21 0.00 45.86 3.32
142 143 3.495670 AGTGCAACGTCTAGAAGCTAG 57.504 47.619 5.51 0.00 45.86 3.42
143 144 2.164624 AGTGCAACGTCTAGAAGCTAGG 59.835 50.000 5.51 0.00 45.86 3.02
144 145 1.135083 TGCAACGTCTAGAAGCTAGGC 60.135 52.381 5.51 5.27 0.00 3.93
145 146 1.828832 CAACGTCTAGAAGCTAGGCG 58.171 55.000 22.35 22.35 46.78 5.52
146 147 0.100861 AACGTCTAGAAGCTAGGCGC 59.899 55.000 23.47 0.00 45.47 6.53
160 161 4.911053 GCTAGGCGCTACACTATATAGTG 58.089 47.826 32.20 32.20 46.07 2.74
170 171 4.098055 CACTATATAGTGTGGCGCCTAG 57.902 50.000 29.70 19.62 46.51 3.02
171 172 2.492484 ACTATATAGTGTGGCGCCTAGC 59.508 50.000 29.70 17.93 39.21 3.42
172 173 3.814676 ACTATATAGTGTGGCGCCTAGCT 60.815 47.826 29.70 22.74 39.62 3.32
173 174 5.640544 ACTATATAGTGTGGCGCCTAGCTC 61.641 50.000 29.70 17.44 39.62 4.09
174 175 7.790584 ACTATATAGTGTGGCGCCTAGCTCT 62.791 48.000 29.70 22.85 39.62 4.09
187 188 3.046087 GCTCTCAAGCGCTGCACA 61.046 61.111 12.58 0.00 39.10 4.57
188 189 2.858868 CTCTCAAGCGCTGCACAC 59.141 61.111 12.58 0.00 0.00 3.82
189 190 1.667191 CTCTCAAGCGCTGCACACT 60.667 57.895 12.58 0.00 0.00 3.55
190 191 1.898459 CTCTCAAGCGCTGCACACTG 61.898 60.000 12.58 3.97 0.00 3.66
191 192 1.957695 CTCAAGCGCTGCACACTGA 60.958 57.895 12.58 9.11 0.00 3.41
192 193 2.167808 CTCAAGCGCTGCACACTGAC 62.168 60.000 12.58 0.00 0.00 3.51
193 194 2.109799 AAGCGCTGCACACTGACT 59.890 55.556 12.58 0.00 0.00 3.41
194 195 1.524621 AAGCGCTGCACACTGACTT 60.525 52.632 12.58 0.00 0.00 3.01
195 196 1.779025 AAGCGCTGCACACTGACTTG 61.779 55.000 12.58 0.00 0.00 3.16
196 197 2.941333 CGCTGCACACTGACTTGG 59.059 61.111 0.00 0.00 0.00 3.61
197 198 1.889105 CGCTGCACACTGACTTGGT 60.889 57.895 0.00 0.00 0.00 3.67
198 199 0.599991 CGCTGCACACTGACTTGGTA 60.600 55.000 0.00 0.00 0.00 3.25
199 200 1.593196 GCTGCACACTGACTTGGTAA 58.407 50.000 0.00 0.00 0.00 2.85
200 201 2.154462 GCTGCACACTGACTTGGTAAT 58.846 47.619 0.00 0.00 0.00 1.89
201 202 2.554032 GCTGCACACTGACTTGGTAATT 59.446 45.455 0.00 0.00 0.00 1.40
202 203 3.004734 GCTGCACACTGACTTGGTAATTT 59.995 43.478 0.00 0.00 0.00 1.82
203 204 4.499696 GCTGCACACTGACTTGGTAATTTT 60.500 41.667 0.00 0.00 0.00 1.82
204 205 5.181690 TGCACACTGACTTGGTAATTTTC 57.818 39.130 0.00 0.00 0.00 2.29
205 206 4.642437 TGCACACTGACTTGGTAATTTTCA 59.358 37.500 0.00 0.00 0.00 2.69
206 207 5.215160 GCACACTGACTTGGTAATTTTCAG 58.785 41.667 0.00 0.00 39.72 3.02
207 208 5.008613 GCACACTGACTTGGTAATTTTCAGA 59.991 40.000 3.99 0.00 37.67 3.27
208 209 6.294176 GCACACTGACTTGGTAATTTTCAGAT 60.294 38.462 3.99 0.00 37.67 2.90
209 210 7.301054 CACACTGACTTGGTAATTTTCAGATC 58.699 38.462 3.99 0.00 37.67 2.75
210 211 6.998074 ACACTGACTTGGTAATTTTCAGATCA 59.002 34.615 3.99 0.00 37.67 2.92
211 212 7.041098 ACACTGACTTGGTAATTTTCAGATCAC 60.041 37.037 3.99 0.00 37.67 3.06
212 213 6.998074 ACTGACTTGGTAATTTTCAGATCACA 59.002 34.615 3.99 0.00 37.67 3.58
213 214 7.041098 ACTGACTTGGTAATTTTCAGATCACAC 60.041 37.037 3.99 0.00 37.67 3.82
214 215 6.073276 TGACTTGGTAATTTTCAGATCACACG 60.073 38.462 0.00 0.00 0.00 4.49
215 216 5.181245 ACTTGGTAATTTTCAGATCACACGG 59.819 40.000 0.00 0.00 0.00 4.94
216 217 4.006989 TGGTAATTTTCAGATCACACGGG 58.993 43.478 0.00 0.00 0.00 5.28
217 218 4.007659 GGTAATTTTCAGATCACACGGGT 58.992 43.478 0.00 0.00 0.00 5.28
218 219 4.142687 GGTAATTTTCAGATCACACGGGTG 60.143 45.833 12.84 12.84 46.66 4.61
219 220 1.234821 TTTTCAGATCACACGGGTGC 58.765 50.000 14.50 0.00 44.87 5.01
220 221 0.948623 TTTCAGATCACACGGGTGCG 60.949 55.000 14.50 1.16 44.87 5.34
221 222 1.811645 TTCAGATCACACGGGTGCGA 61.812 55.000 14.50 3.84 44.87 5.10
222 223 2.094659 CAGATCACACGGGTGCGAC 61.095 63.158 14.50 6.76 44.87 5.19
223 224 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
237 238 4.664677 GACGCTGGCCAGACGTGT 62.665 66.667 40.41 29.83 39.74 4.49
238 239 3.277211 GACGCTGGCCAGACGTGTA 62.277 63.158 40.41 7.41 39.74 2.90
239 240 2.507102 CGCTGGCCAGACGTGTAG 60.507 66.667 37.21 8.65 0.00 2.74
240 241 2.815647 GCTGGCCAGACGTGTAGC 60.816 66.667 37.21 15.66 0.00 3.58
242 243 4.735132 TGGCCAGACGTGTAGCGC 62.735 66.667 0.00 0.00 46.11 5.92
244 245 4.436998 GCCAGACGTGTAGCGCCT 62.437 66.667 2.29 0.00 46.11 5.52
245 246 3.060020 GCCAGACGTGTAGCGCCTA 62.060 63.158 2.29 0.00 46.11 3.93
246 247 1.734137 CCAGACGTGTAGCGCCTAT 59.266 57.895 2.29 0.00 46.11 2.57
247 248 0.317938 CCAGACGTGTAGCGCCTATC 60.318 60.000 2.29 0.00 46.11 2.08
248 249 0.380733 CAGACGTGTAGCGCCTATCA 59.619 55.000 2.29 0.00 46.11 2.15
249 250 1.100510 AGACGTGTAGCGCCTATCAA 58.899 50.000 2.29 0.00 46.11 2.57
250 251 1.681793 AGACGTGTAGCGCCTATCAAT 59.318 47.619 2.29 0.00 46.11 2.57
251 252 2.100916 AGACGTGTAGCGCCTATCAATT 59.899 45.455 2.29 0.00 46.11 2.32
252 253 3.317149 AGACGTGTAGCGCCTATCAATTA 59.683 43.478 2.29 0.00 46.11 1.40
253 254 3.639538 ACGTGTAGCGCCTATCAATTAG 58.360 45.455 2.29 0.00 46.11 1.73
262 263 3.609103 CCTATCAATTAGGCGTTGCAC 57.391 47.619 0.00 0.00 41.20 4.57
263 264 2.942376 CCTATCAATTAGGCGTTGCACA 59.058 45.455 0.00 0.00 41.20 4.57
264 265 3.002656 CCTATCAATTAGGCGTTGCACAG 59.997 47.826 0.00 0.00 41.20 3.66
265 266 1.890876 TCAATTAGGCGTTGCACAGT 58.109 45.000 0.00 0.00 0.00 3.55
266 267 1.535028 TCAATTAGGCGTTGCACAGTG 59.465 47.619 0.00 0.00 0.00 3.66
267 268 1.266718 CAATTAGGCGTTGCACAGTGT 59.733 47.619 1.61 0.00 0.00 3.55
268 269 2.465860 ATTAGGCGTTGCACAGTGTA 57.534 45.000 1.61 0.00 0.00 2.90
269 270 2.242047 TTAGGCGTTGCACAGTGTAA 57.758 45.000 0.00 0.00 0.00 2.41
270 271 2.465860 TAGGCGTTGCACAGTGTAAT 57.534 45.000 7.39 0.00 0.00 1.89
271 272 0.874390 AGGCGTTGCACAGTGTAATG 59.126 50.000 16.94 16.94 33.06 1.90
272 273 0.591170 GGCGTTGCACAGTGTAATGT 59.409 50.000 20.76 0.00 32.60 2.71
278 279 1.501741 CACAGTGTAATGTGGCGCC 59.498 57.895 22.73 22.73 45.53 6.53
279 280 0.955428 CACAGTGTAATGTGGCGCCT 60.955 55.000 29.70 9.99 45.53 5.52
280 281 0.250727 ACAGTGTAATGTGGCGCCTT 60.251 50.000 29.70 16.60 30.46 4.35
281 282 0.447801 CAGTGTAATGTGGCGCCTTC 59.552 55.000 29.70 20.58 0.00 3.46
282 283 1.019278 AGTGTAATGTGGCGCCTTCG 61.019 55.000 29.70 0.00 39.07 3.79
283 284 1.004320 TGTAATGTGGCGCCTTCGT 60.004 52.632 29.70 18.65 38.14 3.85
284 285 1.295357 TGTAATGTGGCGCCTTCGTG 61.295 55.000 29.70 0.00 38.14 4.35
285 286 1.004320 TAATGTGGCGCCTTCGTGT 60.004 52.632 29.70 10.47 38.14 4.49
286 287 1.017177 TAATGTGGCGCCTTCGTGTC 61.017 55.000 29.70 9.44 38.14 3.67
294 295 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
295 296 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
296 297 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
297 298 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
298 299 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
299 300 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
300 301 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
301 302 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
302 303 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
303 304 0.309612 GTCGGGCGTCACACAAAAAT 59.690 50.000 0.00 0.00 0.00 1.82
304 305 0.309302 TCGGGCGTCACACAAAAATG 59.691 50.000 0.00 0.00 0.00 2.32
305 306 0.030101 CGGGCGTCACACAAAAATGT 59.970 50.000 0.00 0.00 0.00 2.71
306 307 1.766069 GGGCGTCACACAAAAATGTC 58.234 50.000 0.00 0.00 0.00 3.06
307 308 1.066303 GGGCGTCACACAAAAATGTCA 59.934 47.619 0.00 0.00 0.00 3.58
308 309 2.384382 GGCGTCACACAAAAATGTCAG 58.616 47.619 0.00 0.00 0.00 3.51
309 310 1.780860 GCGTCACACAAAAATGTCAGC 59.219 47.619 0.00 0.00 0.00 4.26
310 311 2.384382 CGTCACACAAAAATGTCAGCC 58.616 47.619 0.00 0.00 0.00 4.85
311 312 2.223456 CGTCACACAAAAATGTCAGCCA 60.223 45.455 0.00 0.00 0.00 4.75
312 313 3.115554 GTCACACAAAAATGTCAGCCAC 58.884 45.455 0.00 0.00 0.00 5.01
313 314 2.118683 CACACAAAAATGTCAGCCACG 58.881 47.619 0.00 0.00 0.00 4.94
314 315 1.748493 ACACAAAAATGTCAGCCACGT 59.252 42.857 0.00 0.00 0.00 4.49
315 316 2.118683 CACAAAAATGTCAGCCACGTG 58.881 47.619 9.08 9.08 0.00 4.49
316 317 2.020720 ACAAAAATGTCAGCCACGTGA 58.979 42.857 19.30 0.00 0.00 4.35
317 318 2.425312 ACAAAAATGTCAGCCACGTGAA 59.575 40.909 19.30 0.00 0.00 3.18
318 319 3.119316 ACAAAAATGTCAGCCACGTGAAA 60.119 39.130 19.30 0.00 0.00 2.69
319 320 4.050553 CAAAAATGTCAGCCACGTGAAAT 58.949 39.130 19.30 0.00 0.00 2.17
320 321 5.218885 CAAAAATGTCAGCCACGTGAAATA 58.781 37.500 19.30 0.00 0.00 1.40
321 322 4.685169 AAATGTCAGCCACGTGAAATAG 57.315 40.909 19.30 0.00 0.00 1.73
322 323 2.831685 TGTCAGCCACGTGAAATAGT 57.168 45.000 19.30 0.00 0.00 2.12
323 324 3.120321 TGTCAGCCACGTGAAATAGTT 57.880 42.857 19.30 0.00 0.00 2.24
324 325 3.472652 TGTCAGCCACGTGAAATAGTTT 58.527 40.909 19.30 0.00 0.00 2.66
325 326 3.496884 TGTCAGCCACGTGAAATAGTTTC 59.503 43.478 19.30 0.00 40.08 2.78
326 327 3.496884 GTCAGCCACGTGAAATAGTTTCA 59.503 43.478 19.30 1.24 46.68 2.69
334 335 3.134574 TGAAATAGTTTCACGGGCAGT 57.865 42.857 1.24 0.00 44.21 4.40
335 336 3.482436 TGAAATAGTTTCACGGGCAGTT 58.518 40.909 1.24 0.00 44.21 3.16
336 337 3.886505 TGAAATAGTTTCACGGGCAGTTT 59.113 39.130 1.24 0.00 44.21 2.66
337 338 5.064558 TGAAATAGTTTCACGGGCAGTTTA 58.935 37.500 1.24 0.00 44.21 2.01
338 339 5.708230 TGAAATAGTTTCACGGGCAGTTTAT 59.292 36.000 1.24 0.00 44.21 1.40
339 340 6.207810 TGAAATAGTTTCACGGGCAGTTTATT 59.792 34.615 1.24 0.00 44.21 1.40
340 341 5.813080 ATAGTTTCACGGGCAGTTTATTC 57.187 39.130 0.00 0.00 0.00 1.75
341 342 3.751518 AGTTTCACGGGCAGTTTATTCT 58.248 40.909 0.00 0.00 0.00 2.40
342 343 3.502211 AGTTTCACGGGCAGTTTATTCTG 59.498 43.478 0.00 0.00 38.35 3.02
343 344 2.851263 TCACGGGCAGTTTATTCTGT 57.149 45.000 0.00 0.00 37.70 3.41
344 345 2.422597 TCACGGGCAGTTTATTCTGTG 58.577 47.619 0.00 0.00 37.70 3.66
345 346 2.037902 TCACGGGCAGTTTATTCTGTGA 59.962 45.455 0.00 0.00 41.49 3.58
346 347 3.009723 CACGGGCAGTTTATTCTGTGAT 58.990 45.455 0.00 0.00 38.40 3.06
347 348 3.440173 CACGGGCAGTTTATTCTGTGATT 59.560 43.478 0.00 0.00 38.40 2.57
348 349 4.079253 ACGGGCAGTTTATTCTGTGATTT 58.921 39.130 0.00 0.00 37.70 2.17
349 350 4.082787 ACGGGCAGTTTATTCTGTGATTTG 60.083 41.667 0.00 0.00 37.70 2.32
350 351 4.155826 CGGGCAGTTTATTCTGTGATTTGA 59.844 41.667 0.00 0.00 37.70 2.69
351 352 5.163622 CGGGCAGTTTATTCTGTGATTTGAT 60.164 40.000 0.00 0.00 37.70 2.57
352 353 6.625740 CGGGCAGTTTATTCTGTGATTTGATT 60.626 38.462 0.00 0.00 37.70 2.57
353 354 7.099120 GGGCAGTTTATTCTGTGATTTGATTT 58.901 34.615 0.00 0.00 37.70 2.17
354 355 7.276438 GGGCAGTTTATTCTGTGATTTGATTTC 59.724 37.037 0.00 0.00 37.70 2.17
355 356 7.008628 GGCAGTTTATTCTGTGATTTGATTTCG 59.991 37.037 0.00 0.00 37.70 3.46
356 357 7.538678 GCAGTTTATTCTGTGATTTGATTTCGT 59.461 33.333 0.00 0.00 37.70 3.85
357 358 9.398170 CAGTTTATTCTGTGATTTGATTTCGTT 57.602 29.630 0.00 0.00 0.00 3.85
358 359 9.612620 AGTTTATTCTGTGATTTGATTTCGTTC 57.387 29.630 0.00 0.00 0.00 3.95
359 360 9.393249 GTTTATTCTGTGATTTGATTTCGTTCA 57.607 29.630 0.00 0.00 0.00 3.18
363 364 7.307493 TCTGTGATTTGATTTCGTTCATAGG 57.693 36.000 0.00 0.00 0.00 2.57
364 365 6.878923 TCTGTGATTTGATTTCGTTCATAGGT 59.121 34.615 0.00 0.00 0.00 3.08
365 366 7.064609 TCTGTGATTTGATTTCGTTCATAGGTC 59.935 37.037 0.00 0.00 0.00 3.85
366 367 6.652900 TGTGATTTGATTTCGTTCATAGGTCA 59.347 34.615 0.00 0.00 0.00 4.02
367 368 7.174080 TGTGATTTGATTTCGTTCATAGGTCAA 59.826 33.333 0.00 0.00 0.00 3.18
368 369 8.020819 GTGATTTGATTTCGTTCATAGGTCAAA 58.979 33.333 0.00 0.00 38.14 2.69
369 370 8.739039 TGATTTGATTTCGTTCATAGGTCAAAT 58.261 29.630 9.41 9.41 43.48 2.32
370 371 9.573133 GATTTGATTTCGTTCATAGGTCAAATT 57.427 29.630 10.57 0.00 41.90 1.82
371 372 9.927668 ATTTGATTTCGTTCATAGGTCAAATTT 57.072 25.926 0.00 0.00 40.10 1.82
372 373 8.741101 TTGATTTCGTTCATAGGTCAAATTTG 57.259 30.769 12.15 12.15 0.00 2.32
373 374 7.881142 TGATTTCGTTCATAGGTCAAATTTGT 58.119 30.769 17.47 1.67 0.00 2.83
374 375 9.004717 TGATTTCGTTCATAGGTCAAATTTGTA 57.995 29.630 17.47 3.94 0.00 2.41
375 376 9.834628 GATTTCGTTCATAGGTCAAATTTGTAA 57.165 29.630 17.47 0.00 0.00 2.41
383 384 9.213799 TCATAGGTCAAATTTGTAAATTTTGCC 57.786 29.630 17.47 14.49 43.91 4.52
427 428 1.039233 AGGTGGTGCTATGCAATGCC 61.039 55.000 1.53 1.35 41.47 4.40
448 449 4.147449 CCGGTCGATGAGCCTGCA 62.147 66.667 0.00 0.00 0.00 4.41
462 465 1.207791 CCTGCACCCTTATCCACTCT 58.792 55.000 0.00 0.00 0.00 3.24
463 466 1.134280 CCTGCACCCTTATCCACTCTG 60.134 57.143 0.00 0.00 0.00 3.35
484 487 2.605094 CCATTACGACTGGCCATCG 58.395 57.895 25.99 25.99 45.17 3.84
573 576 7.538678 ACTGAAATGAAATTCGACAGCAATAAC 59.461 33.333 0.00 0.00 33.67 1.89
683 696 0.882927 ACGCGCCAGCTAGTTTTTCA 60.883 50.000 5.73 0.00 42.32 2.69
688 701 1.464997 GCCAGCTAGTTTTTCAGTCCG 59.535 52.381 0.00 0.00 0.00 4.79
694 707 1.861971 AGTTTTTCAGTCCGTCCGAC 58.138 50.000 0.00 0.00 42.32 4.79
743 757 2.545526 CGGTCAATGCGATCAATTAGCT 59.454 45.455 0.00 0.00 0.00 3.32
750 778 2.866156 TGCGATCAATTAGCTCCTTTCG 59.134 45.455 0.00 0.00 0.00 3.46
766 794 1.833787 TTCGGCAGTGTACTTCCCCC 61.834 60.000 0.00 0.00 0.00 5.40
769 797 2.288025 GCAGTGTACTTCCCCCGGA 61.288 63.158 0.73 0.00 0.00 5.14
879 913 1.475403 TAACTTCCTCAGCTCCTCCG 58.525 55.000 0.00 0.00 0.00 4.63
964 1006 0.530744 AAGAAGATAGACGTGCGGCA 59.469 50.000 0.00 0.00 0.00 5.69
1299 1354 3.517140 CTCAGCTCGCTCGCCTCT 61.517 66.667 0.00 0.00 0.00 3.69
1437 1492 0.036306 CCTTCGCCACCAACTACCTT 59.964 55.000 0.00 0.00 0.00 3.50
2000 2610 2.203567 CCGGCCCTAGCTAGCTCT 60.204 66.667 23.26 0.00 39.73 4.09
2035 2645 1.956170 CCGAGCCATGCATACGTCC 60.956 63.158 0.00 0.00 0.00 4.79
2136 2766 2.789203 CGCCGCTTCTTACTGACGC 61.789 63.158 0.00 0.00 36.70 5.19
2305 2947 1.300233 GGCGTCGGAGGACATGATC 60.300 63.158 0.00 0.00 43.61 2.92
2306 2948 1.736586 GCGTCGGAGGACATGATCT 59.263 57.895 0.00 0.00 43.61 2.75
2307 2949 0.596083 GCGTCGGAGGACATGATCTG 60.596 60.000 0.00 0.00 43.61 2.90
2308 2950 0.596083 CGTCGGAGGACATGATCTGC 60.596 60.000 0.00 0.39 43.61 4.26
2309 2951 0.596083 GTCGGAGGACATGATCTGCG 60.596 60.000 20.49 20.49 44.26 5.18
2310 2952 1.953138 CGGAGGACATGATCTGCGC 60.953 63.158 16.74 0.00 37.94 6.09
2311 2953 1.596477 GGAGGACATGATCTGCGCC 60.596 63.158 4.18 0.00 0.00 6.53
2312 2954 1.445095 GAGGACATGATCTGCGCCT 59.555 57.895 4.18 1.18 36.09 5.52
2313 2955 0.599728 GAGGACATGATCTGCGCCTC 60.600 60.000 4.18 13.61 40.46 4.70
2314 2956 1.144716 GGACATGATCTGCGCCTCA 59.855 57.895 4.18 5.85 0.00 3.86
2315 2957 0.462581 GGACATGATCTGCGCCTCAA 60.463 55.000 4.18 0.00 0.00 3.02
2316 2958 0.935898 GACATGATCTGCGCCTCAAG 59.064 55.000 4.18 5.17 0.00 3.02
2317 2959 1.094073 ACATGATCTGCGCCTCAAGC 61.094 55.000 4.18 0.00 38.52 4.01
2318 2960 1.093496 CATGATCTGCGCCTCAAGCA 61.093 55.000 4.18 0.00 44.04 3.91
2323 2965 2.110835 TGCGCCTCAAGCAGTCAA 59.889 55.556 4.18 0.00 44.04 3.18
2324 2966 2.253758 TGCGCCTCAAGCAGTCAAC 61.254 57.895 4.18 0.00 44.04 3.18
2325 2967 2.970974 GCGCCTCAAGCAGTCAACC 61.971 63.158 0.00 0.00 44.04 3.77
2326 2968 2.671177 CGCCTCAAGCAGTCAACCG 61.671 63.158 0.00 0.00 44.04 4.44
2327 2969 2.328099 GCCTCAAGCAGTCAACCGG 61.328 63.158 0.00 0.00 42.97 5.28
2328 2970 1.371183 CCTCAAGCAGTCAACCGGA 59.629 57.895 9.46 0.00 0.00 5.14
2439 3143 2.733218 CGCTCGGTTCGTTCTGCA 60.733 61.111 0.00 0.00 0.00 4.41
2450 3154 1.651240 CGTTCTGCATCAAGCCAGGG 61.651 60.000 0.00 0.00 44.83 4.45
2454 3158 1.303561 TGCATCAAGCCAGGGTGTC 60.304 57.895 0.00 0.00 44.83 3.67
2513 3226 5.671329 GCCAATTAGTGATCGTGTTTCTGTC 60.671 44.000 0.00 0.00 0.00 3.51
2585 3341 1.200948 GGTGGTCGGTGTAGACTGTAC 59.799 57.143 0.00 0.00 40.76 2.90
2681 3440 2.125753 GAGAGAGCCACAGTGCCG 60.126 66.667 0.00 0.00 0.00 5.69
2682 3441 4.385405 AGAGAGCCACAGTGCCGC 62.385 66.667 0.00 0.00 0.00 6.53
2713 3488 1.073216 CACGCACGCTCTGGAAGTAG 61.073 60.000 0.00 0.00 33.76 2.57
2761 3897 1.647545 ATGCATGGGCGAACAGAACG 61.648 55.000 0.00 0.00 45.35 3.95
2890 4047 4.722700 TTGGCTCGGCTGCTTCCC 62.723 66.667 0.00 0.00 0.00 3.97
2911 4068 3.372206 CCTGTCTTCGGATGATTGTTGAC 59.628 47.826 0.00 0.00 0.00 3.18
2942 4099 1.066143 GGTCCTCTTTGATTCGCAGGA 60.066 52.381 0.00 0.00 0.00 3.86
2943 4100 2.003301 GTCCTCTTTGATTCGCAGGAC 58.997 52.381 0.79 0.79 44.85 3.85
2965 4122 6.300354 ACCGTGAAAACACATTTAGAGAAG 57.700 37.500 0.00 0.00 0.00 2.85
2996 4153 7.065324 CAGAATTGGAATTTCATGTCCATTTGG 59.935 37.037 12.42 0.00 43.42 3.28
3002 4159 7.234371 TGGAATTTCATGTCCATTTGGTTTCTA 59.766 33.333 0.00 0.00 39.04 2.10
3042 4199 9.260002 AGTTTAATTGCATTACAGGAAAACAAG 57.740 29.630 0.00 0.00 31.94 3.16
3043 4200 7.650834 TTAATTGCATTACAGGAAAACAAGC 57.349 32.000 0.00 0.00 0.00 4.01
3150 4307 1.737236 TCAAGCCGACGAATCAAATGG 59.263 47.619 0.00 0.00 0.00 3.16
3155 4312 1.467374 CCGACGAATCAAATGGCCAAC 60.467 52.381 10.96 0.00 0.00 3.77
3160 4317 5.591099 GACGAATCAAATGGCCAACATAAT 58.409 37.500 10.96 0.00 39.40 1.28
3161 4318 5.976458 ACGAATCAAATGGCCAACATAATT 58.024 33.333 10.96 6.48 39.40 1.40
3162 4319 6.405538 ACGAATCAAATGGCCAACATAATTT 58.594 32.000 10.96 0.66 39.40 1.82
3163 4320 6.878389 ACGAATCAAATGGCCAACATAATTTT 59.122 30.769 10.96 0.00 39.40 1.82
3164 4321 7.390162 ACGAATCAAATGGCCAACATAATTTTT 59.610 29.630 10.96 0.00 39.40 1.94
3235 4392 5.556915 TCGAAGGAAGCCTAAGAATTTCAA 58.443 37.500 0.00 0.00 31.13 2.69
3246 4403 0.457337 GAATTTCAAGGCAGCTGCGG 60.457 55.000 31.19 22.50 43.26 5.69
3267 4424 4.505566 CGGGAGGGATATATATTGGCCATG 60.506 50.000 6.09 0.00 0.00 3.66
3289 4446 8.636213 CCATGATAAGAGCTTAAACAATTGGAT 58.364 33.333 10.83 0.23 0.00 3.41
3292 4449 9.905713 TGATAAGAGCTTAAACAATTGGATAGT 57.094 29.630 10.83 0.00 0.00 2.12
3318 4475 2.416747 TCATCGGTGTGAAAAGAGCTG 58.583 47.619 0.00 0.00 0.00 4.24
3325 4482 2.810852 GTGTGAAAAGAGCTGGAAGGAG 59.189 50.000 0.00 0.00 0.00 3.69
3326 4483 2.224621 TGTGAAAAGAGCTGGAAGGAGG 60.225 50.000 0.00 0.00 0.00 4.30
3340 4497 3.194329 GGAAGGAGGAATTTCAGCCTTTG 59.806 47.826 17.75 0.00 38.96 2.77
3343 4500 2.893489 GGAGGAATTTCAGCCTTTGTGT 59.107 45.455 0.00 0.00 33.84 3.72
3344 4501 4.079253 GGAGGAATTTCAGCCTTTGTGTA 58.921 43.478 0.00 0.00 33.84 2.90
3345 4502 4.082733 GGAGGAATTTCAGCCTTTGTGTAC 60.083 45.833 0.00 0.00 33.84 2.90
3373 4530 5.888161 AGTTAGATGGTGGACAATTTGGATC 59.112 40.000 0.78 0.00 0.00 3.36
3374 4531 3.282021 AGATGGTGGACAATTTGGATCG 58.718 45.455 0.78 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.169198 GCTGACCAAGCGTGTAGC 58.831 61.111 0.00 2.23 43.45 3.58
14 15 2.639286 GGTGCAACGCTGACCAAG 59.361 61.111 0.00 0.00 38.12 3.61
23 24 1.375523 GGTAGTCTGGGGTGCAACG 60.376 63.158 0.00 0.00 38.12 4.10
24 25 1.272807 TAGGTAGTCTGGGGTGCAAC 58.727 55.000 0.00 0.00 0.00 4.17
25 26 2.032965 TTAGGTAGTCTGGGGTGCAA 57.967 50.000 0.00 0.00 0.00 4.08
26 27 2.032965 TTTAGGTAGTCTGGGGTGCA 57.967 50.000 0.00 0.00 0.00 4.57
27 28 3.428413 TTTTTAGGTAGTCTGGGGTGC 57.572 47.619 0.00 0.00 0.00 5.01
28 29 4.157840 GCAATTTTTAGGTAGTCTGGGGTG 59.842 45.833 0.00 0.00 0.00 4.61
29 30 4.044191 AGCAATTTTTAGGTAGTCTGGGGT 59.956 41.667 0.00 0.00 0.00 4.95
30 31 4.600062 AGCAATTTTTAGGTAGTCTGGGG 58.400 43.478 0.00 0.00 0.00 4.96
31 32 6.884836 ACTTAGCAATTTTTAGGTAGTCTGGG 59.115 38.462 0.00 0.00 0.00 4.45
32 33 7.606456 TGACTTAGCAATTTTTAGGTAGTCTGG 59.394 37.037 0.00 0.00 0.00 3.86
33 34 8.547967 TGACTTAGCAATTTTTAGGTAGTCTG 57.452 34.615 0.00 0.00 0.00 3.51
34 35 9.740710 ATTGACTTAGCAATTTTTAGGTAGTCT 57.259 29.630 0.00 0.00 35.01 3.24
35 36 9.774742 CATTGACTTAGCAATTTTTAGGTAGTC 57.225 33.333 0.00 0.00 36.39 2.59
36 37 9.297037 ACATTGACTTAGCAATTTTTAGGTAGT 57.703 29.630 0.00 0.00 36.39 2.73
37 38 9.559958 CACATTGACTTAGCAATTTTTAGGTAG 57.440 33.333 0.00 0.00 36.39 3.18
38 39 8.026607 GCACATTGACTTAGCAATTTTTAGGTA 58.973 33.333 0.00 0.00 36.39 3.08
39 40 6.868339 GCACATTGACTTAGCAATTTTTAGGT 59.132 34.615 0.00 0.00 36.39 3.08
40 41 6.867816 TGCACATTGACTTAGCAATTTTTAGG 59.132 34.615 0.00 0.00 36.39 2.69
41 42 7.809331 TCTGCACATTGACTTAGCAATTTTTAG 59.191 33.333 0.00 0.00 36.39 1.85
42 43 7.656412 TCTGCACATTGACTTAGCAATTTTTA 58.344 30.769 0.00 0.00 36.39 1.52
43 44 6.514947 TCTGCACATTGACTTAGCAATTTTT 58.485 32.000 0.00 0.00 36.39 1.94
44 45 6.088016 TCTGCACATTGACTTAGCAATTTT 57.912 33.333 0.00 0.00 36.39 1.82
45 46 5.706916 CTCTGCACATTGACTTAGCAATTT 58.293 37.500 0.00 0.00 36.39 1.82
46 47 4.380233 GCTCTGCACATTGACTTAGCAATT 60.380 41.667 0.00 0.00 36.39 2.32
47 48 3.128242 GCTCTGCACATTGACTTAGCAAT 59.872 43.478 0.00 0.00 38.96 3.56
48 49 2.485426 GCTCTGCACATTGACTTAGCAA 59.515 45.455 0.00 0.00 34.45 3.91
49 50 2.079158 GCTCTGCACATTGACTTAGCA 58.921 47.619 0.00 0.00 0.00 3.49
50 51 1.399791 GGCTCTGCACATTGACTTAGC 59.600 52.381 0.00 0.00 0.00 3.09
51 52 2.983229 AGGCTCTGCACATTGACTTAG 58.017 47.619 0.00 0.00 0.00 2.18
52 53 4.551702 TTAGGCTCTGCACATTGACTTA 57.448 40.909 0.00 0.00 0.00 2.24
53 54 3.423539 TTAGGCTCTGCACATTGACTT 57.576 42.857 0.00 0.00 0.00 3.01
54 55 3.423539 TTTAGGCTCTGCACATTGACT 57.576 42.857 0.00 0.00 0.00 3.41
55 56 3.671702 GCTTTTAGGCTCTGCACATTGAC 60.672 47.826 0.00 0.00 0.00 3.18
56 57 2.489329 GCTTTTAGGCTCTGCACATTGA 59.511 45.455 0.00 0.00 0.00 2.57
57 58 2.490903 AGCTTTTAGGCTCTGCACATTG 59.509 45.455 0.00 0.00 38.24 2.82
58 59 2.800250 AGCTTTTAGGCTCTGCACATT 58.200 42.857 0.00 0.00 38.24 2.71
59 60 2.503895 AGCTTTTAGGCTCTGCACAT 57.496 45.000 0.00 0.00 38.24 3.21
60 61 2.355108 CCTAGCTTTTAGGCTCTGCACA 60.355 50.000 0.00 0.00 42.97 4.57
61 62 2.284190 CCTAGCTTTTAGGCTCTGCAC 58.716 52.381 0.00 0.00 42.97 4.57
62 63 2.698855 CCTAGCTTTTAGGCTCTGCA 57.301 50.000 0.00 0.00 42.97 4.41
77 78 1.227089 CCACTAGTGCAGCGCCTAG 60.227 63.158 17.86 14.52 36.35 3.02
78 79 1.541310 AACCACTAGTGCAGCGCCTA 61.541 55.000 17.86 0.00 0.00 3.93
79 80 2.883828 AACCACTAGTGCAGCGCCT 61.884 57.895 17.86 0.00 0.00 5.52
80 81 2.358737 AACCACTAGTGCAGCGCC 60.359 61.111 17.86 0.00 0.00 6.53
81 82 2.863153 CAACCACTAGTGCAGCGC 59.137 61.111 17.86 0.00 0.00 5.92
82 83 1.960763 TGCAACCACTAGTGCAGCG 60.961 57.895 17.86 6.34 31.61 5.18
83 84 1.576421 GTGCAACCACTAGTGCAGC 59.424 57.895 17.86 18.77 38.93 5.25
92 93 3.735746 GCTTCATTTTGTAGTGCAACCAC 59.264 43.478 0.00 0.00 42.39 4.16
93 94 3.382865 TGCTTCATTTTGTAGTGCAACCA 59.617 39.130 0.00 0.00 37.80 3.67
94 95 3.976169 TGCTTCATTTTGTAGTGCAACC 58.024 40.909 0.00 0.00 37.80 3.77
96 97 4.142071 TGGTTGCTTCATTTTGTAGTGCAA 60.142 37.500 0.00 0.00 36.74 4.08
97 98 3.382865 TGGTTGCTTCATTTTGTAGTGCA 59.617 39.130 0.00 0.00 0.00 4.57
98 99 3.735746 GTGGTTGCTTCATTTTGTAGTGC 59.264 43.478 0.00 0.00 0.00 4.40
99 100 5.186996 AGTGGTTGCTTCATTTTGTAGTG 57.813 39.130 0.00 0.00 0.00 2.74
100 101 6.017109 CACTAGTGGTTGCTTCATTTTGTAGT 60.017 38.462 15.49 0.00 0.00 2.73
101 102 6.373779 CACTAGTGGTTGCTTCATTTTGTAG 58.626 40.000 15.49 0.00 0.00 2.74
102 103 5.278266 GCACTAGTGGTTGCTTCATTTTGTA 60.278 40.000 23.95 0.00 0.00 2.41
103 104 4.499696 GCACTAGTGGTTGCTTCATTTTGT 60.500 41.667 23.95 0.00 0.00 2.83
104 105 3.983344 GCACTAGTGGTTGCTTCATTTTG 59.017 43.478 23.95 0.00 0.00 2.44
105 106 3.636300 TGCACTAGTGGTTGCTTCATTTT 59.364 39.130 23.95 0.00 0.00 1.82
106 107 3.221771 TGCACTAGTGGTTGCTTCATTT 58.778 40.909 23.95 0.00 0.00 2.32
107 108 2.862541 TGCACTAGTGGTTGCTTCATT 58.137 42.857 23.95 0.00 0.00 2.57
108 109 2.554032 GTTGCACTAGTGGTTGCTTCAT 59.446 45.455 23.95 0.00 0.00 2.57
109 110 1.946768 GTTGCACTAGTGGTTGCTTCA 59.053 47.619 23.95 8.83 0.00 3.02
110 111 1.069906 CGTTGCACTAGTGGTTGCTTC 60.070 52.381 23.95 6.25 0.00 3.86
111 112 0.944386 CGTTGCACTAGTGGTTGCTT 59.056 50.000 23.95 0.00 0.00 3.91
112 113 0.179056 ACGTTGCACTAGTGGTTGCT 60.179 50.000 23.95 0.00 0.00 3.91
113 114 0.234884 GACGTTGCACTAGTGGTTGC 59.765 55.000 23.95 10.41 0.00 4.17
114 115 1.865865 AGACGTTGCACTAGTGGTTG 58.134 50.000 23.95 0.00 0.00 3.77
115 116 2.889045 TCTAGACGTTGCACTAGTGGTT 59.111 45.455 23.95 7.26 37.78 3.67
116 117 2.511659 TCTAGACGTTGCACTAGTGGT 58.488 47.619 23.95 13.11 37.78 4.16
117 118 3.502920 CTTCTAGACGTTGCACTAGTGG 58.497 50.000 23.95 9.92 37.78 4.00
118 119 2.917971 GCTTCTAGACGTTGCACTAGTG 59.082 50.000 18.93 18.93 37.78 2.74
119 120 2.820787 AGCTTCTAGACGTTGCACTAGT 59.179 45.455 8.47 0.00 37.78 2.57
120 121 3.495670 AGCTTCTAGACGTTGCACTAG 57.504 47.619 0.00 3.29 37.87 2.57
121 122 3.377485 CCTAGCTTCTAGACGTTGCACTA 59.623 47.826 0.00 0.00 0.00 2.74
122 123 2.164624 CCTAGCTTCTAGACGTTGCACT 59.835 50.000 0.00 0.00 0.00 4.40
123 124 2.531206 CCTAGCTTCTAGACGTTGCAC 58.469 52.381 0.00 0.00 0.00 4.57
124 125 1.135083 GCCTAGCTTCTAGACGTTGCA 60.135 52.381 0.00 0.00 0.00 4.08
125 126 1.562017 GCCTAGCTTCTAGACGTTGC 58.438 55.000 0.00 0.00 0.00 4.17
126 127 1.828832 CGCCTAGCTTCTAGACGTTG 58.171 55.000 0.00 0.00 0.00 4.10
127 128 0.100861 GCGCCTAGCTTCTAGACGTT 59.899 55.000 10.35 0.00 44.04 3.99
128 129 1.728672 GCGCCTAGCTTCTAGACGT 59.271 57.895 10.35 0.00 44.04 4.34
129 130 4.618513 GCGCCTAGCTTCTAGACG 57.381 61.111 0.00 5.42 44.04 4.18
133 134 7.581076 ACTATATAGTGTAGCGCCTAGCTTCTA 60.581 40.741 14.71 0.00 44.35 2.10
134 135 6.801164 ACTATATAGTGTAGCGCCTAGCTTCT 60.801 42.308 14.71 0.00 44.35 2.85
135 136 5.354792 ACTATATAGTGTAGCGCCTAGCTTC 59.645 44.000 14.71 0.00 44.35 3.86
136 137 5.254901 ACTATATAGTGTAGCGCCTAGCTT 58.745 41.667 14.71 0.00 44.35 3.74
137 138 4.846040 ACTATATAGTGTAGCGCCTAGCT 58.154 43.478 14.71 0.00 46.70 3.32
138 139 4.911053 CACTATATAGTGTAGCGCCTAGC 58.089 47.826 27.86 0.00 46.51 3.42
150 151 2.492484 GCTAGGCGCCACACTATATAGT 59.508 50.000 31.54 9.71 36.90 2.12
151 152 2.755655 AGCTAGGCGCCACACTATATAG 59.244 50.000 31.54 19.15 40.39 1.31
152 153 2.753452 GAGCTAGGCGCCACACTATATA 59.247 50.000 31.54 8.52 40.39 0.86
153 154 1.546476 GAGCTAGGCGCCACACTATAT 59.454 52.381 31.54 7.63 40.39 0.86
154 155 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
155 156 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
156 157 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
157 158 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
158 159 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
159 160 2.230994 CTTGAGAGCTAGGCGCCACA 62.231 60.000 31.54 15.42 40.39 4.17
160 161 1.520342 CTTGAGAGCTAGGCGCCAC 60.520 63.158 31.54 17.93 40.39 5.01
161 162 2.895680 CTTGAGAGCTAGGCGCCA 59.104 61.111 31.54 14.00 40.39 5.69
162 163 2.587473 GCTTGAGAGCTAGGCGCC 60.587 66.667 21.89 21.89 45.65 6.53
163 164 2.959071 CGCTTGAGAGCTAGGCGC 60.959 66.667 0.00 0.00 46.96 6.53
164 165 2.959071 GCGCTTGAGAGCTAGGCG 60.959 66.667 7.08 7.08 46.96 5.52
170 171 3.046087 TGTGCAGCGCTTGAGAGC 61.046 61.111 7.50 8.78 45.65 4.09
171 172 1.667191 AGTGTGCAGCGCTTGAGAG 60.667 57.895 7.50 0.00 33.46 3.20
172 173 1.957695 CAGTGTGCAGCGCTTGAGA 60.958 57.895 7.50 0.00 35.42 3.27
173 174 1.957695 TCAGTGTGCAGCGCTTGAG 60.958 57.895 7.50 0.00 35.42 3.02
174 175 2.108771 TCAGTGTGCAGCGCTTGA 59.891 55.556 7.50 4.85 35.42 3.02
175 176 1.779025 AAGTCAGTGTGCAGCGCTTG 61.779 55.000 7.50 1.73 35.42 4.01
176 177 1.524621 AAGTCAGTGTGCAGCGCTT 60.525 52.632 7.50 0.00 35.42 4.68
177 178 2.109799 AAGTCAGTGTGCAGCGCT 59.890 55.556 2.64 2.64 38.72 5.92
178 179 2.250485 CAAGTCAGTGTGCAGCGC 59.750 61.111 0.00 0.00 0.00 5.92
179 180 0.599991 TACCAAGTCAGTGTGCAGCG 60.600 55.000 0.00 0.00 0.00 5.18
180 181 1.593196 TTACCAAGTCAGTGTGCAGC 58.407 50.000 0.00 0.00 0.00 5.25
181 182 4.836125 AAATTACCAAGTCAGTGTGCAG 57.164 40.909 0.00 0.00 0.00 4.41
182 183 4.642437 TGAAAATTACCAAGTCAGTGTGCA 59.358 37.500 0.00 0.00 0.00 4.57
183 184 5.008613 TCTGAAAATTACCAAGTCAGTGTGC 59.991 40.000 0.00 0.00 37.55 4.57
184 185 6.618287 TCTGAAAATTACCAAGTCAGTGTG 57.382 37.500 0.00 0.00 37.55 3.82
185 186 6.998074 TGATCTGAAAATTACCAAGTCAGTGT 59.002 34.615 0.00 0.00 37.55 3.55
186 187 7.041167 TGTGATCTGAAAATTACCAAGTCAGTG 60.041 37.037 0.00 0.00 37.55 3.66
187 188 6.998074 TGTGATCTGAAAATTACCAAGTCAGT 59.002 34.615 0.00 0.00 37.55 3.41
188 189 7.301054 GTGTGATCTGAAAATTACCAAGTCAG 58.699 38.462 0.00 0.00 37.62 3.51
189 190 6.073276 CGTGTGATCTGAAAATTACCAAGTCA 60.073 38.462 0.00 0.00 0.00 3.41
190 191 6.307155 CGTGTGATCTGAAAATTACCAAGTC 58.693 40.000 0.00 0.00 0.00 3.01
191 192 5.181245 CCGTGTGATCTGAAAATTACCAAGT 59.819 40.000 0.00 0.00 0.00 3.16
192 193 5.391950 CCCGTGTGATCTGAAAATTACCAAG 60.392 44.000 0.00 0.00 0.00 3.61
193 194 4.457603 CCCGTGTGATCTGAAAATTACCAA 59.542 41.667 0.00 0.00 0.00 3.67
194 195 4.006989 CCCGTGTGATCTGAAAATTACCA 58.993 43.478 0.00 0.00 0.00 3.25
195 196 4.007659 ACCCGTGTGATCTGAAAATTACC 58.992 43.478 0.00 0.00 0.00 2.85
196 197 4.671766 GCACCCGTGTGATCTGAAAATTAC 60.672 45.833 0.90 0.00 45.76 1.89
197 198 3.438781 GCACCCGTGTGATCTGAAAATTA 59.561 43.478 0.90 0.00 45.76 1.40
198 199 2.228822 GCACCCGTGTGATCTGAAAATT 59.771 45.455 0.90 0.00 45.76 1.82
199 200 1.812571 GCACCCGTGTGATCTGAAAAT 59.187 47.619 0.90 0.00 45.76 1.82
200 201 1.234821 GCACCCGTGTGATCTGAAAA 58.765 50.000 0.90 0.00 45.76 2.29
201 202 0.948623 CGCACCCGTGTGATCTGAAA 60.949 55.000 0.90 0.00 45.76 2.69
202 203 1.374125 CGCACCCGTGTGATCTGAA 60.374 57.895 0.90 0.00 45.76 3.02
203 204 2.261361 CGCACCCGTGTGATCTGA 59.739 61.111 0.90 0.00 45.76 3.27
204 205 2.261361 TCGCACCCGTGTGATCTG 59.739 61.111 0.90 0.00 45.76 2.90
220 221 3.277211 TACACGTCTGGCCAGCGTC 62.277 63.158 36.15 24.33 38.44 5.19
221 222 3.282745 CTACACGTCTGGCCAGCGT 62.283 63.158 34.50 34.50 40.07 5.07
222 223 2.507102 CTACACGTCTGGCCAGCG 60.507 66.667 33.47 33.47 35.30 5.18
223 224 2.815647 GCTACACGTCTGGCCAGC 60.816 66.667 28.91 20.95 0.00 4.85
224 225 2.507102 CGCTACACGTCTGGCCAG 60.507 66.667 27.87 27.87 36.87 4.85
225 226 4.735132 GCGCTACACGTCTGGCCA 62.735 66.667 4.71 4.71 46.11 5.36
232 233 2.596904 AATTGATAGGCGCTACACGT 57.403 45.000 7.64 0.00 46.11 4.49
233 234 2.987149 CCTAATTGATAGGCGCTACACG 59.013 50.000 7.64 0.00 44.72 4.49
242 243 2.942376 TGTGCAACGCCTAATTGATAGG 59.058 45.455 0.00 0.00 44.51 2.57
243 244 3.623060 ACTGTGCAACGCCTAATTGATAG 59.377 43.478 0.00 0.00 42.39 2.08
244 245 3.373748 CACTGTGCAACGCCTAATTGATA 59.626 43.478 0.00 0.00 42.39 2.15
245 246 2.162208 CACTGTGCAACGCCTAATTGAT 59.838 45.455 0.00 0.00 42.39 2.57
246 247 1.535028 CACTGTGCAACGCCTAATTGA 59.465 47.619 0.00 0.00 42.39 2.57
247 248 1.266718 ACACTGTGCAACGCCTAATTG 59.733 47.619 7.90 0.00 42.39 2.32
248 249 1.604604 ACACTGTGCAACGCCTAATT 58.395 45.000 7.90 0.00 42.39 1.40
249 250 2.465860 TACACTGTGCAACGCCTAAT 57.534 45.000 7.90 0.00 42.39 1.73
250 251 2.242047 TTACACTGTGCAACGCCTAA 57.758 45.000 7.90 0.00 42.39 2.69
251 252 2.073056 CATTACACTGTGCAACGCCTA 58.927 47.619 7.90 0.00 42.39 3.93
252 253 0.874390 CATTACACTGTGCAACGCCT 59.126 50.000 7.90 0.00 42.39 5.52
253 254 0.591170 ACATTACACTGTGCAACGCC 59.409 50.000 7.90 0.00 42.39 5.68
254 255 1.662876 CCACATTACACTGTGCAACGC 60.663 52.381 7.90 0.00 44.16 4.84
255 256 1.662876 GCCACATTACACTGTGCAACG 60.663 52.381 7.90 0.00 44.16 4.10
256 257 1.662876 CGCCACATTACACTGTGCAAC 60.663 52.381 7.90 0.00 44.16 4.17
257 258 0.590682 CGCCACATTACACTGTGCAA 59.409 50.000 7.90 1.06 44.16 4.08
258 259 1.851021 GCGCCACATTACACTGTGCA 61.851 55.000 7.90 0.00 44.16 4.57
259 260 1.154225 GCGCCACATTACACTGTGC 60.154 57.895 7.90 0.00 44.16 4.57
260 261 0.955428 AGGCGCCACATTACACTGTG 60.955 55.000 31.54 6.19 44.92 3.66
261 262 0.250727 AAGGCGCCACATTACACTGT 60.251 50.000 31.54 0.00 0.00 3.55
262 263 0.447801 GAAGGCGCCACATTACACTG 59.552 55.000 31.54 0.00 0.00 3.66
263 264 1.019278 CGAAGGCGCCACATTACACT 61.019 55.000 31.54 0.00 0.00 3.55
264 265 1.296056 ACGAAGGCGCCACATTACAC 61.296 55.000 31.54 8.98 42.48 2.90
265 266 1.004320 ACGAAGGCGCCACATTACA 60.004 52.632 31.54 0.00 42.48 2.41
266 267 1.296056 ACACGAAGGCGCCACATTAC 61.296 55.000 31.54 11.50 42.48 1.89
267 268 1.004320 ACACGAAGGCGCCACATTA 60.004 52.632 31.54 0.00 42.48 1.90
268 269 2.281484 ACACGAAGGCGCCACATT 60.281 55.556 31.54 15.15 42.48 2.71
269 270 2.742372 GACACGAAGGCGCCACAT 60.742 61.111 31.54 14.90 42.48 3.21
277 278 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
278 279 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
279 280 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
280 281 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
281 282 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
282 283 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
283 284 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
284 285 0.309612 ATTTTTGTGTGACGCCCGAC 59.690 50.000 0.00 0.00 0.00 4.79
285 286 0.309302 CATTTTTGTGTGACGCCCGA 59.691 50.000 0.00 0.00 0.00 5.14
286 287 0.030101 ACATTTTTGTGTGACGCCCG 59.970 50.000 0.00 0.00 0.00 6.13
287 288 1.066303 TGACATTTTTGTGTGACGCCC 59.934 47.619 0.00 0.00 31.16 6.13
288 289 2.384382 CTGACATTTTTGTGTGACGCC 58.616 47.619 0.00 0.00 31.16 5.68
289 290 1.780860 GCTGACATTTTTGTGTGACGC 59.219 47.619 0.00 0.00 31.16 5.19
290 291 2.223456 TGGCTGACATTTTTGTGTGACG 60.223 45.455 0.00 0.00 31.16 4.35
291 292 3.115554 GTGGCTGACATTTTTGTGTGAC 58.884 45.455 0.00 0.00 31.16 3.67
292 293 2.223456 CGTGGCTGACATTTTTGTGTGA 60.223 45.455 0.00 0.00 31.16 3.58
293 294 2.118683 CGTGGCTGACATTTTTGTGTG 58.881 47.619 0.00 0.00 31.16 3.82
294 295 1.748493 ACGTGGCTGACATTTTTGTGT 59.252 42.857 0.00 0.00 34.39 3.72
295 296 2.118683 CACGTGGCTGACATTTTTGTG 58.881 47.619 7.95 0.00 0.00 3.33
296 297 2.020720 TCACGTGGCTGACATTTTTGT 58.979 42.857 17.00 0.00 0.00 2.83
297 298 2.772568 TCACGTGGCTGACATTTTTG 57.227 45.000 17.00 0.00 0.00 2.44
298 299 3.791973 TTTCACGTGGCTGACATTTTT 57.208 38.095 17.00 0.00 0.00 1.94
299 300 4.518970 ACTATTTCACGTGGCTGACATTTT 59.481 37.500 17.00 0.00 0.00 1.82
300 301 4.072131 ACTATTTCACGTGGCTGACATTT 58.928 39.130 17.00 0.00 0.00 2.32
301 302 3.674997 ACTATTTCACGTGGCTGACATT 58.325 40.909 17.00 0.00 0.00 2.71
302 303 3.334583 ACTATTTCACGTGGCTGACAT 57.665 42.857 17.00 0.00 0.00 3.06
303 304 2.831685 ACTATTTCACGTGGCTGACA 57.168 45.000 17.00 0.00 0.00 3.58
304 305 3.496884 TGAAACTATTTCACGTGGCTGAC 59.503 43.478 17.00 0.00 44.21 3.51
305 306 3.734463 TGAAACTATTTCACGTGGCTGA 58.266 40.909 17.00 0.00 44.21 4.26
314 315 3.134574 ACTGCCCGTGAAACTATTTCA 57.865 42.857 0.00 0.00 46.68 2.69
315 316 4.499037 AAACTGCCCGTGAAACTATTTC 57.501 40.909 0.00 0.00 40.08 2.17
316 317 6.433093 AGAATAAACTGCCCGTGAAACTATTT 59.567 34.615 0.00 0.00 31.75 1.40
317 318 5.944007 AGAATAAACTGCCCGTGAAACTATT 59.056 36.000 0.00 0.00 31.75 1.73
318 319 5.354234 CAGAATAAACTGCCCGTGAAACTAT 59.646 40.000 0.00 0.00 31.75 2.12
319 320 4.693566 CAGAATAAACTGCCCGTGAAACTA 59.306 41.667 0.00 0.00 31.75 2.24
320 321 3.502211 CAGAATAAACTGCCCGTGAAACT 59.498 43.478 0.00 0.00 31.75 2.66
321 322 3.252458 ACAGAATAAACTGCCCGTGAAAC 59.748 43.478 0.00 0.00 41.06 2.78
322 323 3.252215 CACAGAATAAACTGCCCGTGAAA 59.748 43.478 0.00 0.00 41.06 2.69
323 324 2.811431 CACAGAATAAACTGCCCGTGAA 59.189 45.455 0.00 0.00 41.06 3.18
324 325 2.037902 TCACAGAATAAACTGCCCGTGA 59.962 45.455 0.00 0.00 41.06 4.35
325 326 2.422597 TCACAGAATAAACTGCCCGTG 58.577 47.619 0.00 0.00 41.06 4.94
326 327 2.851263 TCACAGAATAAACTGCCCGT 57.149 45.000 0.00 0.00 41.06 5.28
327 328 4.155826 TCAAATCACAGAATAAACTGCCCG 59.844 41.667 0.00 0.00 41.06 6.13
328 329 5.643379 TCAAATCACAGAATAAACTGCCC 57.357 39.130 0.00 0.00 41.06 5.36
329 330 7.008628 CGAAATCAAATCACAGAATAAACTGCC 59.991 37.037 0.00 0.00 41.06 4.85
330 331 7.538678 ACGAAATCAAATCACAGAATAAACTGC 59.461 33.333 0.00 0.00 41.06 4.40
331 332 8.955061 ACGAAATCAAATCACAGAATAAACTG 57.045 30.769 0.00 0.00 42.78 3.16
332 333 9.612620 GAACGAAATCAAATCACAGAATAAACT 57.387 29.630 0.00 0.00 0.00 2.66
333 334 9.393249 TGAACGAAATCAAATCACAGAATAAAC 57.607 29.630 0.00 0.00 0.00 2.01
337 338 8.400947 CCTATGAACGAAATCAAATCACAGAAT 58.599 33.333 0.00 0.00 32.06 2.40
338 339 7.390440 ACCTATGAACGAAATCAAATCACAGAA 59.610 33.333 0.00 0.00 32.06 3.02
339 340 6.878923 ACCTATGAACGAAATCAAATCACAGA 59.121 34.615 0.00 0.00 32.06 3.41
340 341 7.076842 ACCTATGAACGAAATCAAATCACAG 57.923 36.000 0.00 0.00 32.06 3.66
341 342 6.652900 TGACCTATGAACGAAATCAAATCACA 59.347 34.615 0.00 0.00 32.06 3.58
342 343 7.072177 TGACCTATGAACGAAATCAAATCAC 57.928 36.000 0.00 0.00 32.06 3.06
343 344 7.680442 TTGACCTATGAACGAAATCAAATCA 57.320 32.000 0.00 0.00 32.06 2.57
344 345 9.573133 AATTTGACCTATGAACGAAATCAAATC 57.427 29.630 9.11 0.00 41.85 2.17
345 346 9.927668 AAATTTGACCTATGAACGAAATCAAAT 57.072 25.926 0.00 0.00 43.55 2.32
346 347 9.190858 CAAATTTGACCTATGAACGAAATCAAA 57.809 29.630 13.08 0.00 38.52 2.69
347 348 8.356657 ACAAATTTGACCTATGAACGAAATCAA 58.643 29.630 24.64 0.00 32.06 2.57
348 349 7.881142 ACAAATTTGACCTATGAACGAAATCA 58.119 30.769 24.64 0.00 0.00 2.57
349 350 9.834628 TTACAAATTTGACCTATGAACGAAATC 57.165 29.630 24.64 0.00 0.00 2.17
357 358 9.213799 GGCAAAATTTACAAATTTGACCTATGA 57.786 29.630 24.64 3.85 45.16 2.15
358 359 8.997323 TGGCAAAATTTACAAATTTGACCTATG 58.003 29.630 24.64 13.77 45.16 2.23
359 360 8.998377 GTGGCAAAATTTACAAATTTGACCTAT 58.002 29.630 24.64 9.09 45.16 2.57
360 361 7.442666 GGTGGCAAAATTTACAAATTTGACCTA 59.557 33.333 24.64 4.09 45.16 3.08
361 362 6.262049 GGTGGCAAAATTTACAAATTTGACCT 59.738 34.615 24.64 5.12 45.16 3.85
362 363 6.038714 TGGTGGCAAAATTTACAAATTTGACC 59.961 34.615 24.64 15.75 45.16 4.02
363 364 6.909895 GTGGTGGCAAAATTTACAAATTTGAC 59.090 34.615 24.64 7.35 45.16 3.18
364 365 6.599244 TGTGGTGGCAAAATTTACAAATTTGA 59.401 30.769 24.64 2.69 45.16 2.69
365 366 6.690528 GTGTGGTGGCAAAATTTACAAATTTG 59.309 34.615 16.67 16.67 45.16 2.32
367 368 5.882557 TGTGTGGTGGCAAAATTTACAAATT 59.117 32.000 0.00 0.00 40.15 1.82
368 369 5.431765 TGTGTGGTGGCAAAATTTACAAAT 58.568 33.333 0.00 0.00 0.00 2.32
369 370 4.832248 TGTGTGGTGGCAAAATTTACAAA 58.168 34.783 0.00 0.00 0.00 2.83
370 371 4.160439 TCTGTGTGGTGGCAAAATTTACAA 59.840 37.500 0.00 0.00 0.00 2.41
371 372 3.701542 TCTGTGTGGTGGCAAAATTTACA 59.298 39.130 0.00 0.00 0.00 2.41
372 373 4.048504 GTCTGTGTGGTGGCAAAATTTAC 58.951 43.478 0.00 0.00 0.00 2.01
373 374 3.068873 GGTCTGTGTGGTGGCAAAATTTA 59.931 43.478 0.00 0.00 0.00 1.40
374 375 2.158971 GGTCTGTGTGGTGGCAAAATTT 60.159 45.455 0.00 0.00 0.00 1.82
375 376 1.412343 GGTCTGTGTGGTGGCAAAATT 59.588 47.619 0.00 0.00 0.00 1.82
376 377 1.039856 GGTCTGTGTGGTGGCAAAAT 58.960 50.000 0.00 0.00 0.00 1.82
377 378 0.323816 TGGTCTGTGTGGTGGCAAAA 60.324 50.000 0.00 0.00 0.00 2.44
378 379 0.323816 TTGGTCTGTGTGGTGGCAAA 60.324 50.000 0.00 0.00 0.00 3.68
379 380 0.323816 TTTGGTCTGTGTGGTGGCAA 60.324 50.000 0.00 0.00 0.00 4.52
380 381 1.034838 GTTTGGTCTGTGTGGTGGCA 61.035 55.000 0.00 0.00 0.00 4.92
381 382 1.733526 GTTTGGTCTGTGTGGTGGC 59.266 57.895 0.00 0.00 0.00 5.01
382 383 0.462937 TCGTTTGGTCTGTGTGGTGG 60.463 55.000 0.00 0.00 0.00 4.61
383 384 0.655733 GTCGTTTGGTCTGTGTGGTG 59.344 55.000 0.00 0.00 0.00 4.17
448 449 1.522569 GCGCAGAGTGGATAAGGGT 59.477 57.895 0.30 0.00 0.00 4.34
484 487 0.104120 GGACAAACCAACCAAGCCAC 59.896 55.000 0.00 0.00 38.79 5.01
670 673 2.737252 GGACGGACTGAAAAACTAGCTG 59.263 50.000 0.00 0.00 0.00 4.24
671 674 2.609737 CGGACGGACTGAAAAACTAGCT 60.610 50.000 0.00 0.00 0.00 3.32
702 715 2.517450 GCGAATCAAGGAGCGACCG 61.517 63.158 0.00 0.00 44.74 4.79
750 778 2.267961 CGGGGGAAGTACACTGCC 59.732 66.667 0.00 0.00 41.24 4.85
766 794 9.843334 GATCCTAAAATAATCTACACTACTCCG 57.157 37.037 0.00 0.00 0.00 4.63
769 797 8.305317 GGCGATCCTAAAATAATCTACACTACT 58.695 37.037 0.00 0.00 0.00 2.57
879 913 1.178534 AGAGGAGAGCTAGGCGATGC 61.179 60.000 0.00 0.00 0.00 3.91
990 1032 1.300465 CTGCAGCATCGTCGGCTAT 60.300 57.895 0.00 0.00 40.23 2.97
1341 1396 0.615331 TGTTGATGAGGAGGTGGAGC 59.385 55.000 0.00 0.00 0.00 4.70
1437 1492 1.675310 CGTCAGCAGGAAATGGCCA 60.675 57.895 8.56 8.56 0.00 5.36
1509 1564 0.313043 ACGACACGTTCACGATCCTT 59.687 50.000 6.30 0.00 43.02 3.36
1510 1565 0.109873 GACGACACGTTCACGATCCT 60.110 55.000 6.30 0.00 41.37 3.24
1512 1567 0.386352 TGGACGACACGTTCACGATC 60.386 55.000 6.30 2.60 40.69 3.69
1663 2147 5.242838 CCAAGGTTAATTACAAACAGGAGCA 59.757 40.000 0.00 0.00 0.00 4.26
1667 2151 5.461032 TGCCAAGGTTAATTACAAACAGG 57.539 39.130 0.00 0.00 0.00 4.00
1668 2152 6.365789 CACATGCCAAGGTTAATTACAAACAG 59.634 38.462 0.00 0.00 0.00 3.16
1669 2153 6.219473 CACATGCCAAGGTTAATTACAAACA 58.781 36.000 0.00 0.00 0.00 2.83
1670 2154 5.120053 GCACATGCCAAGGTTAATTACAAAC 59.880 40.000 0.00 0.00 34.31 2.93
1671 2155 5.221521 TGCACATGCCAAGGTTAATTACAAA 60.222 36.000 0.49 0.00 41.18 2.83
1672 2156 4.281941 TGCACATGCCAAGGTTAATTACAA 59.718 37.500 0.49 0.00 41.18 2.41
1673 2157 3.829026 TGCACATGCCAAGGTTAATTACA 59.171 39.130 0.49 0.00 41.18 2.41
2035 2645 2.512515 GGCTAGGCGCAGAACAGG 60.513 66.667 10.83 0.00 41.67 4.00
2306 2948 2.110835 TTGACTGCTTGAGGCGCA 59.889 55.556 10.83 0.00 45.43 6.09
2307 2949 2.558313 GTTGACTGCTTGAGGCGC 59.442 61.111 0.00 0.00 45.43 6.53
2308 2950 2.671177 CGGTTGACTGCTTGAGGCG 61.671 63.158 0.00 0.00 45.43 5.52
2309 2951 2.328099 CCGGTTGACTGCTTGAGGC 61.328 63.158 0.00 0.00 42.22 4.70
2310 2952 0.951040 GTCCGGTTGACTGCTTGAGG 60.951 60.000 0.00 0.00 41.03 3.86
2311 2953 0.249868 TGTCCGGTTGACTGCTTGAG 60.250 55.000 0.00 0.00 44.75 3.02
2312 2954 0.249868 CTGTCCGGTTGACTGCTTGA 60.250 55.000 0.00 0.00 44.75 3.02
2313 2955 1.230635 CCTGTCCGGTTGACTGCTTG 61.231 60.000 0.00 0.00 44.75 4.01
2314 2956 1.071471 CCTGTCCGGTTGACTGCTT 59.929 57.895 0.00 0.00 44.75 3.91
2315 2957 1.407656 TTCCTGTCCGGTTGACTGCT 61.408 55.000 0.00 0.00 44.75 4.24
2316 2958 0.951040 CTTCCTGTCCGGTTGACTGC 60.951 60.000 0.00 0.00 44.75 4.40
2317 2959 0.679505 TCTTCCTGTCCGGTTGACTG 59.320 55.000 0.00 0.00 44.75 3.51
2318 2960 1.550976 GATCTTCCTGTCCGGTTGACT 59.449 52.381 0.00 0.00 44.75 3.41
2319 2961 1.550976 AGATCTTCCTGTCCGGTTGAC 59.449 52.381 0.00 0.00 44.72 3.18
2320 2962 1.550524 CAGATCTTCCTGTCCGGTTGA 59.449 52.381 0.00 0.00 0.00 3.18
2321 2963 2.009042 GCAGATCTTCCTGTCCGGTTG 61.009 57.143 0.00 0.00 36.57 3.77
2322 2964 0.250513 GCAGATCTTCCTGTCCGGTT 59.749 55.000 0.00 0.00 36.57 4.44
2323 2965 1.901085 GCAGATCTTCCTGTCCGGT 59.099 57.895 0.00 0.00 36.57 5.28
2324 2966 1.227089 CGCAGATCTTCCTGTCCGG 60.227 63.158 0.00 0.00 36.57 5.14
2325 2967 1.880340 GCGCAGATCTTCCTGTCCG 60.880 63.158 0.30 0.00 36.57 4.79
2326 2968 1.522580 GGCGCAGATCTTCCTGTCC 60.523 63.158 10.83 0.00 36.57 4.02
2327 2969 0.529555 GAGGCGCAGATCTTCCTGTC 60.530 60.000 10.83 0.00 36.57 3.51
2328 2970 1.260538 TGAGGCGCAGATCTTCCTGT 61.261 55.000 10.83 0.00 36.57 4.00
2329 2971 0.107993 TTGAGGCGCAGATCTTCCTG 60.108 55.000 10.83 0.00 37.23 3.86
2330 2972 0.177604 CTTGAGGCGCAGATCTTCCT 59.822 55.000 10.83 7.47 0.00 3.36
2331 2973 1.435408 GCTTGAGGCGCAGATCTTCC 61.435 60.000 10.83 0.00 0.00 3.46
2332 2974 0.742281 TGCTTGAGGCGCAGATCTTC 60.742 55.000 10.83 0.00 45.43 2.87
2333 2975 1.297689 TGCTTGAGGCGCAGATCTT 59.702 52.632 10.83 0.00 45.43 2.40
2334 2976 2.984623 TGCTTGAGGCGCAGATCT 59.015 55.556 10.83 0.00 45.43 2.75
2439 3143 0.700564 ATGTGACACCCTGGCTTGAT 59.299 50.000 2.45 0.00 0.00 2.57
2585 3341 6.925211 TCTCACTGACAAAATACAGGAGTAG 58.075 40.000 0.00 0.00 38.30 2.57
2646 3404 1.140852 CTCACTTCCCTGACACCAACA 59.859 52.381 0.00 0.00 0.00 3.33
2713 3488 1.215655 GCACCATCGCCATCTCGTAC 61.216 60.000 0.00 0.00 0.00 3.67
2761 3897 3.119096 GTTCTGTTCGGGCGCTCC 61.119 66.667 7.64 6.04 0.00 4.70
2785 3942 2.680913 GCATCGGGCGCATATGGAC 61.681 63.158 10.83 0.00 0.00 4.02
2890 4047 3.061295 CGTCAACAATCATCCGAAGACAG 59.939 47.826 0.00 0.00 0.00 3.51
2911 4068 6.699575 ATCAAAGAGGACCATAAATTTCCG 57.300 37.500 0.00 0.00 34.31 4.30
2965 4122 5.163513 ACATGAAATTCCAATTCTGCGTTC 58.836 37.500 0.00 0.00 0.00 3.95
3027 4184 7.518211 GCAAAAATTCGCTTGTTTTCCTGTAAT 60.518 33.333 0.00 0.00 0.00 1.89
3042 4199 3.121362 CGAAACCTCTTGCAAAAATTCGC 60.121 43.478 14.96 0.00 33.17 4.70
3043 4200 3.425193 CCGAAACCTCTTGCAAAAATTCG 59.575 43.478 18.02 18.02 38.41 3.34
3109 4266 7.461182 TTGAATCCCGTATGATTTTGTTCTT 57.539 32.000 0.00 0.00 35.15 2.52
3114 4271 4.610945 GGCTTGAATCCCGTATGATTTTG 58.389 43.478 0.00 0.00 35.15 2.44
3118 4275 1.691976 TCGGCTTGAATCCCGTATGAT 59.308 47.619 4.70 0.00 44.63 2.45
3122 4279 1.140161 CGTCGGCTTGAATCCCGTA 59.860 57.895 4.70 0.00 44.63 4.02
3187 4344 5.817784 TCAACGGGTTTCCATAGGAATTTA 58.182 37.500 0.00 0.00 41.71 1.40
3196 4353 2.483014 TCGATTCAACGGGTTTCCAT 57.517 45.000 0.00 0.00 0.00 3.41
3199 4356 2.419667 TCCTTCGATTCAACGGGTTTC 58.580 47.619 0.00 0.00 0.00 2.78
3246 4403 5.912149 TCATGGCCAATATATATCCCTCC 57.088 43.478 10.96 0.00 0.00 4.30
3289 4446 8.610248 TCTTTTCACACCGATGATTTTTACTA 57.390 30.769 0.00 0.00 0.00 1.82
3291 4448 6.305638 GCTCTTTTCACACCGATGATTTTTAC 59.694 38.462 0.00 0.00 0.00 2.01
3292 4449 6.206634 AGCTCTTTTCACACCGATGATTTTTA 59.793 34.615 0.00 0.00 0.00 1.52
3318 4475 2.816777 AGGCTGAAATTCCTCCTTCC 57.183 50.000 0.00 0.00 0.00 3.46
3325 4482 4.846779 TGTACACAAAGGCTGAAATTCC 57.153 40.909 0.00 0.00 0.00 3.01
3326 4483 6.756542 ACTTTTGTACACAAAGGCTGAAATTC 59.243 34.615 22.85 0.00 45.34 2.17
3340 4497 5.761234 TGTCCACCATCTAACTTTTGTACAC 59.239 40.000 0.00 0.00 0.00 2.90
3343 4500 8.356657 CAAATTGTCCACCATCTAACTTTTGTA 58.643 33.333 0.00 0.00 0.00 2.41
3344 4501 6.976934 AATTGTCCACCATCTAACTTTTGT 57.023 33.333 0.00 0.00 0.00 2.83
3345 4502 6.646240 CCAAATTGTCCACCATCTAACTTTTG 59.354 38.462 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.