Multiple sequence alignment - TraesCS4B01G358300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G358300 chr4B 100.000 3518 0 0 1 3518 648696772 648693255 0.000000e+00 6497.0
1 TraesCS4B01G358300 chr4B 90.988 577 49 3 1102 1676 648913915 648913340 0.000000e+00 774.0
2 TraesCS4B01G358300 chr4B 89.799 598 56 5 1088 1681 648572520 648573116 0.000000e+00 761.0
3 TraesCS4B01G358300 chr4B 91.882 542 42 2 1141 1681 649222958 649222418 0.000000e+00 756.0
4 TraesCS4B01G358300 chr4B 89.602 452 20 7 2713 3153 649180801 649181236 1.850000e-152 549.0
5 TraesCS4B01G358300 chr4B 89.974 379 15 11 1669 2024 649222386 649222008 5.320000e-128 468.0
6 TraesCS4B01G358300 chr4B 77.503 889 88 51 1729 2539 648913187 648912333 6.980000e-117 431.0
7 TraesCS4B01G358300 chr4B 88.547 358 25 12 1669 2012 648573148 648573503 1.510000e-113 420.0
8 TraesCS4B01G358300 chr4B 86.957 368 29 9 2357 2712 649179570 649179930 2.540000e-106 396.0
9 TraesCS4B01G358300 chr4B 87.000 200 18 4 2111 2303 649177948 649178146 5.910000e-53 219.0
10 TraesCS4B01G358300 chr4B 93.706 143 9 0 2161 2303 648573760 648573902 7.650000e-52 215.0
11 TraesCS4B01G358300 chr4B 93.662 142 9 0 2161 2302 649221758 649221617 2.750000e-51 213.0
12 TraesCS4B01G358300 chr4B 86.869 99 10 3 2775 2871 648574580 648574677 1.340000e-19 108.0
13 TraesCS4B01G358300 chr4B 85.294 102 7 3 2653 2746 648912011 648911910 8.040000e-17 99.0
14 TraesCS4B01G358300 chr4B 86.458 96 2 4 2264 2359 649221622 649221538 1.040000e-15 95.3
15 TraesCS4B01G358300 chr4B 90.625 64 6 0 1669 1732 648913304 648913241 6.260000e-13 86.1
16 TraesCS4B01G358300 chr4B 100.000 30 0 0 2130 2159 648573707 648573736 4.910000e-04 56.5
17 TraesCS4B01G358300 chr4B 100.000 30 0 0 2130 2159 649221811 649221782 4.910000e-04 56.5
18 TraesCS4B01G358300 chr4B 100.000 28 0 0 2660 2687 648574133 648574160 6.000000e-03 52.8
19 TraesCS4B01G358300 chr6B 90.564 1081 88 5 1 1073 558666569 558667643 0.000000e+00 1419.0
20 TraesCS4B01G358300 chr6B 91.622 370 29 2 3150 3518 614133435 614133803 8.710000e-141 510.0
21 TraesCS4B01G358300 chr3B 91.179 1043 82 4 1 1038 33434958 33433921 0.000000e+00 1408.0
22 TraesCS4B01G358300 chr3B 89.103 1092 97 7 1 1071 615698223 615699313 0.000000e+00 1338.0
23 TraesCS4B01G358300 chr3B 84.190 759 70 24 344 1071 344140666 344139927 0.000000e+00 691.0
24 TraesCS4B01G358300 chr3B 92.329 365 24 3 3151 3513 155596994 155596632 1.870000e-142 516.0
25 TraesCS4B01G358300 chr3B 91.870 369 27 2 3151 3518 154442555 154442921 2.420000e-141 512.0
26 TraesCS4B01G358300 chr1B 89.595 1086 93 7 1 1070 453431473 453432554 0.000000e+00 1362.0
27 TraesCS4B01G358300 chr1B 92.371 367 25 3 3153 3518 301818058 301817694 1.450000e-143 520.0
28 TraesCS4B01G358300 chr1B 87.160 257 33 0 1140 1396 280756341 280756085 3.430000e-75 292.0
29 TraesCS4B01G358300 chr5D 89.289 1083 97 11 1 1072 426487828 426488902 0.000000e+00 1339.0
30 TraesCS4B01G358300 chr2D 88.479 1085 107 11 1 1072 625360570 625359491 0.000000e+00 1295.0
31 TraesCS4B01G358300 chr5A 87.580 1087 114 11 1 1072 214922968 214921888 0.000000e+00 1240.0
32 TraesCS4B01G358300 chr5A 91.096 584 43 7 1099 1681 687873519 687874094 0.000000e+00 782.0
33 TraesCS4B01G358300 chr5A 91.486 552 45 2 1131 1681 687937386 687936836 0.000000e+00 758.0
34 TraesCS4B01G358300 chr5A 84.273 763 45 25 2398 3150 687894976 687895673 0.000000e+00 675.0
35 TraesCS4B01G358300 chr5A 90.592 287 21 5 1729 2012 687874253 687874536 3.320000e-100 375.0
36 TraesCS4B01G358300 chr5A 82.353 323 31 15 2163 2482 687936086 687935787 1.250000e-64 257.0
37 TraesCS4B01G358300 chr5A 87.444 223 11 3 1669 1874 687936804 687936582 1.260000e-59 241.0
38 TraesCS4B01G358300 chr5A 78.495 372 46 21 2606 2954 687875216 687875576 2.750000e-51 213.0
39 TraesCS4B01G358300 chr5A 77.077 349 45 21 2161 2477 687874759 687875104 6.040000e-38 169.0
40 TraesCS4B01G358300 chr5A 86.869 99 10 3 2775 2871 687935563 687935466 1.340000e-19 108.0
41 TraesCS4B01G358300 chr5A 91.803 61 5 0 1669 1729 687874126 687874186 6.260000e-13 86.1
42 TraesCS4B01G358300 chr1D 87.420 1089 119 10 1 1075 56893397 56894481 0.000000e+00 1236.0
43 TraesCS4B01G358300 chr6A 87.362 1084 118 11 1 1071 36376007 36374930 0.000000e+00 1225.0
44 TraesCS4B01G358300 chr4D 84.276 1202 90 29 1671 2798 503499353 503500529 0.000000e+00 1081.0
45 TraesCS4B01G358300 chr4D 92.771 581 40 2 1102 1681 503507547 503506968 0.000000e+00 839.0
46 TraesCS4B01G358300 chr4D 90.344 611 54 4 1072 1681 503498405 503499011 0.000000e+00 797.0
47 TraesCS4B01G358300 chr4D 91.267 584 49 2 1099 1681 503450764 503451346 0.000000e+00 795.0
48 TraesCS4B01G358300 chr4D 91.562 320 20 2 2841 3153 503500525 503500844 5.390000e-118 435.0
49 TraesCS4B01G358300 chr4D 87.151 358 31 9 1669 2012 503506936 503506580 3.290000e-105 392.0
50 TraesCS4B01G358300 chr4D 91.386 267 18 2 1768 2029 503451533 503451799 9.280000e-96 361.0
51 TraesCS4B01G358300 chr4D 91.457 199 11 3 2161 2359 503506346 503506154 5.790000e-68 268.0
52 TraesCS4B01G358300 chr4D 76.944 360 32 25 2163 2477 503452006 503452359 1.310000e-34 158.0
53 TraesCS4B01G358300 chr4D 75.708 424 44 34 2606 2995 503452458 503452856 1.310000e-34 158.0
54 TraesCS4B01G358300 chr4D 87.379 103 10 3 2771 2871 503505844 503505743 7.980000e-22 115.0
55 TraesCS4B01G358300 chr4D 90.164 61 6 0 1669 1729 503451378 503451438 2.910000e-11 80.5
56 TraesCS4B01G358300 chr4D 92.500 40 3 0 2124 2163 503451945 503451984 1.360000e-04 58.4
57 TraesCS4B01G358300 chr4D 89.130 46 5 0 2660 2705 503505902 503505857 1.360000e-04 58.4
58 TraesCS4B01G358300 chr4D 100.000 30 0 0 2130 2159 503506399 503506370 4.910000e-04 56.5
59 TraesCS4B01G358300 chr5B 92.162 370 27 2 3150 3518 382570606 382570974 4.020000e-144 521.0
60 TraesCS4B01G358300 chr5B 92.120 368 25 2 3153 3518 326569234 326568869 1.870000e-142 516.0
61 TraesCS4B01G358300 chr5B 91.848 368 26 3 3153 3518 634990972 634991337 8.710000e-141 510.0
62 TraesCS4B01G358300 chr7B 92.162 370 26 2 3150 3518 659433759 659433392 1.450000e-143 520.0
63 TraesCS4B01G358300 chr2B 91.421 373 28 2 3148 3518 123152829 123153199 3.130000e-140 508.0
64 TraesCS4B01G358300 chr7D 92.623 244 18 0 1784 2027 569233163 569232920 5.590000e-93 351.0
65 TraesCS4B01G358300 chr6D 91.803 244 20 0 1784 2027 17447939 17447696 1.210000e-89 340.0
66 TraesCS4B01G358300 chr1A 87.556 225 28 0 1172 1396 394029819 394030043 9.690000e-66 261.0
67 TraesCS4B01G358300 chr4A 83.660 153 23 2 1530 1681 699888615 699888464 3.660000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G358300 chr4B 648693255 648696772 3517 True 6497.000000 6497 100.000000 1 3518 1 chr4B.!!$R1 3517
1 TraesCS4B01G358300 chr4B 649177948 649181236 3288 False 388.000000 549 87.853000 2111 3153 3 chr4B.!!$F2 1042
2 TraesCS4B01G358300 chr4B 648911910 648913915 2005 True 347.525000 774 86.102500 1102 2746 4 chr4B.!!$R2 1644
3 TraesCS4B01G358300 chr4B 649221538 649222958 1420 True 317.760000 756 92.395200 1141 2359 5 chr4B.!!$R3 1218
4 TraesCS4B01G358300 chr4B 648572520 648574677 2157 False 268.883333 761 93.153500 1088 2871 6 chr4B.!!$F1 1783
5 TraesCS4B01G358300 chr6B 558666569 558667643 1074 False 1419.000000 1419 90.564000 1 1073 1 chr6B.!!$F1 1072
6 TraesCS4B01G358300 chr3B 33433921 33434958 1037 True 1408.000000 1408 91.179000 1 1038 1 chr3B.!!$R1 1037
7 TraesCS4B01G358300 chr3B 615698223 615699313 1090 False 1338.000000 1338 89.103000 1 1071 1 chr3B.!!$F2 1070
8 TraesCS4B01G358300 chr3B 344139927 344140666 739 True 691.000000 691 84.190000 344 1071 1 chr3B.!!$R3 727
9 TraesCS4B01G358300 chr1B 453431473 453432554 1081 False 1362.000000 1362 89.595000 1 1070 1 chr1B.!!$F1 1069
10 TraesCS4B01G358300 chr5D 426487828 426488902 1074 False 1339.000000 1339 89.289000 1 1072 1 chr5D.!!$F1 1071
11 TraesCS4B01G358300 chr2D 625359491 625360570 1079 True 1295.000000 1295 88.479000 1 1072 1 chr2D.!!$R1 1071
12 TraesCS4B01G358300 chr5A 214921888 214922968 1080 True 1240.000000 1240 87.580000 1 1072 1 chr5A.!!$R1 1071
13 TraesCS4B01G358300 chr5A 687894976 687895673 697 False 675.000000 675 84.273000 2398 3150 1 chr5A.!!$F1 752
14 TraesCS4B01G358300 chr5A 687935466 687937386 1920 True 341.000000 758 87.038000 1131 2871 4 chr5A.!!$R2 1740
15 TraesCS4B01G358300 chr5A 687873519 687875576 2057 False 325.020000 782 85.812600 1099 2954 5 chr5A.!!$F2 1855
16 TraesCS4B01G358300 chr1D 56893397 56894481 1084 False 1236.000000 1236 87.420000 1 1075 1 chr1D.!!$F1 1074
17 TraesCS4B01G358300 chr6A 36374930 36376007 1077 True 1225.000000 1225 87.362000 1 1071 1 chr6A.!!$R1 1070
18 TraesCS4B01G358300 chr4D 503498405 503500844 2439 False 771.000000 1081 88.727333 1072 3153 3 chr4D.!!$F2 2081
19 TraesCS4B01G358300 chr4D 503505743 503507547 1804 True 288.150000 839 91.314667 1102 2871 6 chr4D.!!$R1 1769
20 TraesCS4B01G358300 chr4D 503450764 503452856 2092 False 268.483333 795 86.328167 1099 2995 6 chr4D.!!$F1 1896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 531 0.397957 GGAGGAGGAGGAGAAGGGTC 60.398 65.0 0.0 0.0 0.00 4.46 F
549 566 0.439985 CAAGTCCATGCGTCAACTCG 59.560 55.0 0.0 0.0 0.00 4.18 F
1975 2591 0.311165 CACTGACCTCGTCTTCGTGT 59.689 55.0 0.0 0.0 38.33 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2578 0.039074 AGAGCAACACGAAGACGAGG 60.039 55.0 0.00 0.0 42.66 4.63 R
2443 4723 0.689623 ACAGTCCCAGCTCTTCCTTG 59.310 55.0 0.00 0.0 0.00 3.61 R
3227 6755 0.030235 GAAAACTGCCCGGACACAAC 59.970 55.0 0.73 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.654663 AAGTAATATCTGAACTACACAACTTCC 57.345 33.333 0.00 0.00 0.00 3.46
176 178 3.113260 ACTTGGAGAGCAACAGTACAC 57.887 47.619 0.00 0.00 0.00 2.90
182 184 3.680458 GGAGAGCAACAGTACACTAAAGC 59.320 47.826 0.00 0.00 0.00 3.51
183 186 4.561105 GAGAGCAACAGTACACTAAAGCT 58.439 43.478 0.00 0.00 0.00 3.74
334 343 6.011981 TCACTTAGTCAAACCCTAATCCCAAT 60.012 38.462 0.00 0.00 0.00 3.16
466 475 6.716628 TGGATAAAGCAGAAGATGAACAAACT 59.283 34.615 0.00 0.00 0.00 2.66
467 476 7.231317 TGGATAAAGCAGAAGATGAACAAACTT 59.769 33.333 0.00 0.00 0.00 2.66
514 531 0.397957 GGAGGAGGAGGAGAAGGGTC 60.398 65.000 0.00 0.00 0.00 4.46
549 566 0.439985 CAAGTCCATGCGTCAACTCG 59.560 55.000 0.00 0.00 0.00 4.18
794 846 2.609920 GAGTCGAGGGGAGGGGAT 59.390 66.667 0.00 0.00 0.00 3.85
806 858 1.935400 AGGGGATGGGAATGGTGCA 60.935 57.895 0.00 0.00 0.00 4.57
941 1010 2.946990 TGTCGGATCTAGCGTCAATACA 59.053 45.455 0.00 0.00 0.00 2.29
1015 1084 6.007936 ACTGACACGCAAAAATTAGCAATA 57.992 33.333 0.00 0.00 0.00 1.90
1058 1127 5.819379 TGATGCCTCAATTGTGATACTTCTC 59.181 40.000 9.06 0.00 31.85 2.87
1059 1128 4.517285 TGCCTCAATTGTGATACTTCTCC 58.483 43.478 9.06 0.00 31.85 3.71
1074 1143 2.024176 TCTCCGCAATTAACTCCTGC 57.976 50.000 0.00 0.00 0.00 4.85
1079 1148 1.133025 CGCAATTAACTCCTGCCAAGG 59.867 52.381 0.00 0.00 46.06 3.61
1123 1192 2.682136 TGGCCGGTAGTGCTAGCA 60.682 61.111 14.93 14.93 33.46 3.49
1136 1205 1.005332 TGCTAGCAGAGAGTGGAGACT 59.995 52.381 14.93 0.00 33.98 3.24
1175 1244 1.923909 GGTACCTGTTGGGCTCCCT 60.924 63.158 4.06 0.00 39.10 4.20
1179 1248 3.260100 CTGTTGGGCTCCCTGGGT 61.260 66.667 13.56 0.00 36.94 4.51
1340 1409 3.206957 GGTGGTTATTCCGGCGCC 61.207 66.667 19.07 19.07 39.52 6.53
1431 1500 2.888863 CACCTCGACCTCAGCTCC 59.111 66.667 0.00 0.00 0.00 4.70
1469 1538 4.803426 CGCTCGCCGCTTCCTCTT 62.803 66.667 0.00 0.00 36.13 2.85
1477 1546 1.066587 CGCTTCCTCTTCCTAGGCG 59.933 63.158 2.96 0.00 36.51 5.52
1743 2252 3.684788 CACCTAACGCTCATTGTTTAGCT 59.315 43.478 0.00 0.00 36.56 3.32
1815 2337 4.570663 GACGCGACGCAGGCCTAT 62.571 66.667 21.35 0.00 0.00 2.57
1962 2578 1.939769 GAGAGGGCCTCGTCACTGAC 61.940 65.000 27.11 9.07 35.36 3.51
1975 2591 0.311165 CACTGACCTCGTCTTCGTGT 59.689 55.000 0.00 0.00 38.33 4.49
2018 2639 2.104792 CCATCCCACAGGTGACGATTAT 59.895 50.000 0.00 0.00 0.00 1.28
2057 2747 0.948141 GTCGCTGAGCTCTGTTTGCT 60.948 55.000 20.24 0.00 44.24 3.91
2059 2749 0.590195 CGCTGAGCTCTGTTTGCTTT 59.410 50.000 20.24 0.00 41.30 3.51
2060 2750 1.662309 CGCTGAGCTCTGTTTGCTTTG 60.662 52.381 20.24 0.57 41.30 2.77
2061 2751 1.336125 GCTGAGCTCTGTTTGCTTTGT 59.664 47.619 20.24 0.00 41.30 2.83
2062 2752 2.857489 GCTGAGCTCTGTTTGCTTTGTG 60.857 50.000 20.24 0.00 41.30 3.33
2065 2755 0.386838 GCTCTGTTTGCTTTGTGCCT 59.613 50.000 0.00 0.00 42.00 4.75
2068 2758 0.932399 CTGTTTGCTTTGTGCCTTGC 59.068 50.000 0.00 0.00 42.00 4.01
2069 2759 0.461693 TGTTTGCTTTGTGCCTTGCC 60.462 50.000 0.00 0.00 42.00 4.52
2072 2799 2.030490 TTGCTTTGTGCCTTGCCCTG 62.030 55.000 0.00 0.00 42.00 4.45
2081 2808 2.356278 CTTGCCCTGGCCTGCTTA 59.644 61.111 3.32 0.00 41.09 3.09
2303 3169 0.608640 ACCGGACAGGAACATCTGAC 59.391 55.000 9.46 0.00 45.00 3.51
2318 4552 4.817464 ACATCTGACTGAGTATCCGACTAC 59.183 45.833 0.00 0.00 39.06 2.73
2319 4553 4.757019 TCTGACTGAGTATCCGACTACT 57.243 45.455 0.00 0.00 39.06 2.57
2320 4554 4.695396 TCTGACTGAGTATCCGACTACTC 58.305 47.826 14.08 14.08 45.18 2.59
2321 4555 4.406326 TCTGACTGAGTATCCGACTACTCT 59.594 45.833 18.89 6.10 45.19 3.24
2322 4556 5.597594 TCTGACTGAGTATCCGACTACTCTA 59.402 44.000 18.89 9.38 45.19 2.43
2323 4557 5.599732 TGACTGAGTATCCGACTACTCTAC 58.400 45.833 18.89 12.87 45.19 2.59
2324 4558 5.363292 TGACTGAGTATCCGACTACTCTACT 59.637 44.000 18.89 7.06 45.19 2.57
2325 4559 6.127111 TGACTGAGTATCCGACTACTCTACTT 60.127 42.308 18.89 6.61 45.19 2.24
2326 4560 6.652053 ACTGAGTATCCGACTACTCTACTTT 58.348 40.000 18.89 3.64 45.19 2.66
2327 4561 6.539464 ACTGAGTATCCGACTACTCTACTTTG 59.461 42.308 18.89 9.24 45.19 2.77
2359 4601 6.315393 GTCCATCAACCGTGTAAACATATTCT 59.685 38.462 0.00 0.00 0.00 2.40
2360 4602 6.315144 TCCATCAACCGTGTAAACATATTCTG 59.685 38.462 0.00 0.00 0.00 3.02
2363 4605 5.121611 TCAACCGTGTAAACATATTCTGCTG 59.878 40.000 0.00 0.00 0.00 4.41
2364 4606 3.374058 ACCGTGTAAACATATTCTGCTGC 59.626 43.478 0.00 0.00 0.00 5.25
2365 4607 3.373748 CCGTGTAAACATATTCTGCTGCA 59.626 43.478 0.88 0.88 0.00 4.41
2366 4608 4.035558 CCGTGTAAACATATTCTGCTGCAT 59.964 41.667 1.31 0.00 0.00 3.96
2368 4610 4.736793 GTGTAAACATATTCTGCTGCATGC 59.263 41.667 11.82 11.82 43.25 4.06
2369 4611 3.447918 AAACATATTCTGCTGCATGCC 57.552 42.857 16.68 0.28 42.00 4.40
2370 4612 2.061509 ACATATTCTGCTGCATGCCA 57.938 45.000 16.68 5.80 42.00 4.92
2373 4630 2.423446 TATTCTGCTGCATGCCAAGA 57.577 45.000 16.68 12.34 42.00 3.02
2435 4710 2.558359 TGATCGTGTCACAGAGTGATGT 59.442 45.455 3.42 0.00 44.63 3.06
2443 4723 1.397343 CACAGAGTGATGTGCATCTGC 59.603 52.381 11.70 0.00 43.69 4.26
2483 4763 9.363763 GACTGTGAGATCCATGTGTATTATATG 57.636 37.037 0.00 0.00 0.00 1.78
2484 4764 8.874156 ACTGTGAGATCCATGTGTATTATATGT 58.126 33.333 0.00 0.00 0.00 2.29
2485 4765 9.148104 CTGTGAGATCCATGTGTATTATATGTG 57.852 37.037 0.00 0.00 0.00 3.21
2540 4862 6.371825 ACACTAAACTAGGCTTATTGACTTGC 59.628 38.462 0.00 0.00 34.56 4.01
2548 4870 1.398390 CTTATTGACTTGCTGGTCGGC 59.602 52.381 0.00 0.00 38.91 5.54
2598 5101 9.268282 ACTATATTCCATTCGTATTATCCTGGT 57.732 33.333 0.00 0.00 0.00 4.00
2631 5135 4.564372 CCTGTATTGTGTCAGTGAGATTCG 59.436 45.833 0.00 0.00 0.00 3.34
2632 5136 5.385509 TGTATTGTGTCAGTGAGATTCGA 57.614 39.130 0.00 0.00 0.00 3.71
2633 5137 5.965922 TGTATTGTGTCAGTGAGATTCGAT 58.034 37.500 0.00 0.00 0.00 3.59
2634 5138 6.036470 TGTATTGTGTCAGTGAGATTCGATC 58.964 40.000 0.00 0.00 0.00 3.69
2690 5226 2.358898 GTGAGACATGCCACAGTGTTTT 59.641 45.455 0.00 0.00 33.72 2.43
2692 5228 4.216257 GTGAGACATGCCACAGTGTTTTAT 59.784 41.667 0.00 0.00 33.72 1.40
2855 6337 0.537143 GACCGGCCATTCCATATGCA 60.537 55.000 0.00 0.00 34.01 3.96
2876 6358 2.511600 GATGCTTGGGACGGACGG 60.512 66.667 0.00 0.00 0.00 4.79
2966 6486 2.081585 GAAGGAAGGGGTGGCCTTGT 62.082 60.000 3.32 0.00 41.85 3.16
2996 6517 2.592287 GGCGTTGGACGTTTCCCA 60.592 61.111 2.27 0.00 44.73 4.37
3002 6523 1.602377 GTTGGACGTTTCCCAGAACTG 59.398 52.381 0.00 0.00 42.01 3.16
3003 6524 1.124780 TGGACGTTTCCCAGAACTGA 58.875 50.000 3.19 0.00 42.01 3.41
3013 6534 1.216710 CAGAACTGACGAGGCCTCC 59.783 63.158 27.20 14.48 0.00 4.30
3153 6681 3.979495 GGATGATAACGTGCTACCGTAAG 59.021 47.826 0.00 0.00 40.85 2.34
3166 6694 3.201342 CGTAAGGCCATCTCCATCG 57.799 57.895 5.01 0.00 0.00 3.84
3167 6695 0.673985 CGTAAGGCCATCTCCATCGA 59.326 55.000 5.01 0.00 0.00 3.59
3168 6696 1.336332 CGTAAGGCCATCTCCATCGAG 60.336 57.143 5.01 0.00 37.48 4.04
3169 6697 0.681733 TAAGGCCATCTCCATCGAGC 59.318 55.000 5.01 0.00 35.94 5.03
3170 6698 2.356793 GGCCATCTCCATCGAGCG 60.357 66.667 0.00 0.00 35.94 5.03
3171 6699 2.356793 GCCATCTCCATCGAGCGG 60.357 66.667 0.00 0.00 35.94 5.52
3172 6700 2.356793 CCATCTCCATCGAGCGGC 60.357 66.667 0.00 0.00 35.94 6.53
3173 6701 2.356793 CATCTCCATCGAGCGGCC 60.357 66.667 0.00 0.00 35.94 6.13
3174 6702 3.620785 ATCTCCATCGAGCGGCCC 61.621 66.667 0.00 0.00 35.94 5.80
3178 6706 4.794648 CCATCGAGCGGCCCCAAA 62.795 66.667 0.00 0.00 0.00 3.28
3179 6707 3.508840 CATCGAGCGGCCCCAAAC 61.509 66.667 0.00 0.00 0.00 2.93
3180 6708 4.796495 ATCGAGCGGCCCCAAACC 62.796 66.667 0.00 0.00 0.00 3.27
3189 6717 4.303993 CCCCAAACCGACGTCCGT 62.304 66.667 10.58 6.88 36.31 4.69
3190 6718 2.280321 CCCAAACCGACGTCCGTT 60.280 61.111 15.23 15.23 36.31 4.44
3191 6719 1.888638 CCCAAACCGACGTCCGTTT 60.889 57.895 23.51 23.51 36.31 3.60
3192 6720 1.438562 CCCAAACCGACGTCCGTTTT 61.439 55.000 25.67 13.27 33.04 2.43
3193 6721 0.316360 CCAAACCGACGTCCGTTTTG 60.316 55.000 25.67 20.37 46.05 2.44
3194 6722 0.926628 CAAACCGACGTCCGTTTTGC 60.927 55.000 25.67 0.00 42.15 3.68
3195 6723 2.050639 AAACCGACGTCCGTTTTGCC 62.051 55.000 23.51 0.00 31.61 4.52
3196 6724 3.719144 CCGACGTCCGTTTTGCCC 61.719 66.667 10.58 0.00 36.31 5.36
3197 6725 4.067016 CGACGTCCGTTTTGCCCG 62.067 66.667 10.58 0.00 0.00 6.13
3198 6726 3.719144 GACGTCCGTTTTGCCCGG 61.719 66.667 3.51 0.00 46.83 5.73
3205 6733 2.253513 CGTTTTGCCCGGATTCTGT 58.746 52.632 0.73 0.00 0.00 3.41
3206 6734 0.168128 CGTTTTGCCCGGATTCTGTC 59.832 55.000 0.73 0.00 0.00 3.51
3207 6735 0.526211 GTTTTGCCCGGATTCTGTCC 59.474 55.000 0.73 0.00 44.10 4.02
3218 6746 3.522553 GGATTCTGTCCGTTTGAGTAGG 58.477 50.000 0.00 0.00 37.23 3.18
3219 6747 3.522553 GATTCTGTCCGTTTGAGTAGGG 58.477 50.000 0.00 0.00 0.00 3.53
3220 6748 0.606604 TCTGTCCGTTTGAGTAGGGC 59.393 55.000 0.00 0.00 0.00 5.19
3221 6749 0.320374 CTGTCCGTTTGAGTAGGGCA 59.680 55.000 0.00 0.00 37.30 5.36
3222 6750 0.981183 TGTCCGTTTGAGTAGGGCAT 59.019 50.000 0.00 0.00 34.33 4.40
3223 6751 1.349688 TGTCCGTTTGAGTAGGGCATT 59.650 47.619 0.00 0.00 34.33 3.56
3224 6752 1.737793 GTCCGTTTGAGTAGGGCATTG 59.262 52.381 0.00 0.00 0.00 2.82
3225 6753 1.094785 CCGTTTGAGTAGGGCATTGG 58.905 55.000 0.00 0.00 0.00 3.16
3226 6754 1.094785 CGTTTGAGTAGGGCATTGGG 58.905 55.000 0.00 0.00 0.00 4.12
3227 6755 1.474330 GTTTGAGTAGGGCATTGGGG 58.526 55.000 0.00 0.00 0.00 4.96
3228 6756 1.080638 TTTGAGTAGGGCATTGGGGT 58.919 50.000 0.00 0.00 0.00 4.95
3229 6757 1.080638 TTGAGTAGGGCATTGGGGTT 58.919 50.000 0.00 0.00 0.00 4.11
3230 6758 0.331278 TGAGTAGGGCATTGGGGTTG 59.669 55.000 0.00 0.00 0.00 3.77
3231 6759 0.331616 GAGTAGGGCATTGGGGTTGT 59.668 55.000 0.00 0.00 0.00 3.32
3232 6760 0.039618 AGTAGGGCATTGGGGTTGTG 59.960 55.000 0.00 0.00 0.00 3.33
3233 6761 0.251608 GTAGGGCATTGGGGTTGTGT 60.252 55.000 0.00 0.00 0.00 3.72
3234 6762 0.039035 TAGGGCATTGGGGTTGTGTC 59.961 55.000 0.00 0.00 0.00 3.67
3235 6763 2.282783 GGGCATTGGGGTTGTGTCC 61.283 63.158 0.00 0.00 0.00 4.02
3236 6764 2.635443 GGCATTGGGGTTGTGTCCG 61.635 63.158 0.00 0.00 0.00 4.79
3237 6765 2.635443 GCATTGGGGTTGTGTCCGG 61.635 63.158 0.00 0.00 0.00 5.14
3238 6766 1.976474 CATTGGGGTTGTGTCCGGG 60.976 63.158 0.00 0.00 0.00 5.73
3239 6767 3.879180 ATTGGGGTTGTGTCCGGGC 62.879 63.158 0.00 0.00 0.00 6.13
3242 6770 4.265056 GGGTTGTGTCCGGGCAGT 62.265 66.667 10.28 0.00 0.00 4.40
3243 6771 2.203294 GGTTGTGTCCGGGCAGTT 60.203 61.111 10.28 0.00 0.00 3.16
3244 6772 1.826487 GGTTGTGTCCGGGCAGTTT 60.826 57.895 10.28 0.00 0.00 2.66
3245 6773 1.388837 GGTTGTGTCCGGGCAGTTTT 61.389 55.000 10.28 0.00 0.00 2.43
3246 6774 0.030235 GTTGTGTCCGGGCAGTTTTC 59.970 55.000 10.28 0.00 0.00 2.29
3247 6775 1.440938 TTGTGTCCGGGCAGTTTTCG 61.441 55.000 10.28 0.00 0.00 3.46
3248 6776 2.281208 TGTCCGGGCAGTTTTCGG 60.281 61.111 3.51 0.00 44.59 4.30
3249 6777 3.053896 GTCCGGGCAGTTTTCGGG 61.054 66.667 0.00 0.00 43.54 5.14
3250 6778 3.243053 TCCGGGCAGTTTTCGGGA 61.243 61.111 0.00 0.00 43.54 5.14
3251 6779 2.045340 CCGGGCAGTTTTCGGGAT 60.045 61.111 0.00 0.00 40.07 3.85
3252 6780 2.406616 CCGGGCAGTTTTCGGGATG 61.407 63.158 0.00 0.00 40.07 3.51
3253 6781 2.885113 GGGCAGTTTTCGGGATGC 59.115 61.111 0.00 0.00 37.95 3.91
3254 6782 2.485122 GGCAGTTTTCGGGATGCG 59.515 61.111 0.00 0.00 39.58 4.73
3255 6783 2.485122 GCAGTTTTCGGGATGCGG 59.515 61.111 0.00 0.00 0.00 5.69
3256 6784 2.332654 GCAGTTTTCGGGATGCGGT 61.333 57.895 0.00 0.00 0.00 5.68
3257 6785 1.501741 CAGTTTTCGGGATGCGGTG 59.498 57.895 0.00 0.00 0.00 4.94
3258 6786 1.674322 AGTTTTCGGGATGCGGTGG 60.674 57.895 0.00 0.00 0.00 4.61
3259 6787 3.059386 TTTTCGGGATGCGGTGGC 61.059 61.111 0.00 0.00 40.52 5.01
3309 6837 2.512286 CATCCTGTCCGCGTGCAT 60.512 61.111 4.92 0.00 0.00 3.96
3310 6838 2.108514 CATCCTGTCCGCGTGCATT 61.109 57.895 4.92 0.00 0.00 3.56
3311 6839 1.377202 ATCCTGTCCGCGTGCATTT 60.377 52.632 4.92 0.00 0.00 2.32
3312 6840 0.960364 ATCCTGTCCGCGTGCATTTT 60.960 50.000 4.92 0.00 0.00 1.82
3313 6841 1.169661 TCCTGTCCGCGTGCATTTTT 61.170 50.000 4.92 0.00 0.00 1.94
3314 6842 0.729140 CCTGTCCGCGTGCATTTTTC 60.729 55.000 4.92 0.00 0.00 2.29
3315 6843 0.238289 CTGTCCGCGTGCATTTTTCT 59.762 50.000 4.92 0.00 0.00 2.52
3316 6844 0.665835 TGTCCGCGTGCATTTTTCTT 59.334 45.000 4.92 0.00 0.00 2.52
3317 6845 1.066303 TGTCCGCGTGCATTTTTCTTT 59.934 42.857 4.92 0.00 0.00 2.52
3318 6846 1.451651 GTCCGCGTGCATTTTTCTTTG 59.548 47.619 4.92 0.00 0.00 2.77
3319 6847 0.161446 CCGCGTGCATTTTTCTTTGC 59.839 50.000 4.92 0.00 39.33 3.68
3320 6848 0.851495 CGCGTGCATTTTTCTTTGCA 59.149 45.000 0.00 0.00 46.03 4.08
3326 6854 4.405116 TGCATTTTTCTTTGCAAGTCCT 57.595 36.364 0.00 0.00 45.30 3.85
3327 6855 4.768583 TGCATTTTTCTTTGCAAGTCCTT 58.231 34.783 0.00 0.00 45.30 3.36
3328 6856 5.911752 TGCATTTTTCTTTGCAAGTCCTTA 58.088 33.333 0.00 0.00 45.30 2.69
3329 6857 6.344500 TGCATTTTTCTTTGCAAGTCCTTAA 58.656 32.000 0.00 0.00 45.30 1.85
3330 6858 6.991531 TGCATTTTTCTTTGCAAGTCCTTAAT 59.008 30.769 0.00 0.00 45.30 1.40
3331 6859 7.498570 TGCATTTTTCTTTGCAAGTCCTTAATT 59.501 29.630 0.00 0.00 45.30 1.40
3332 6860 8.344831 GCATTTTTCTTTGCAAGTCCTTAATTT 58.655 29.630 0.00 0.00 38.72 1.82
3373 6901 9.853555 TTTTGGTACATGAAACAATACATCATC 57.146 29.630 0.00 0.00 39.30 2.92
3374 6902 8.572855 TTGGTACATGAAACAATACATCATCA 57.427 30.769 0.00 0.00 39.30 3.07
3375 6903 7.984391 TGGTACATGAAACAATACATCATCAC 58.016 34.615 0.00 0.00 31.65 3.06
3376 6904 7.609532 TGGTACATGAAACAATACATCATCACA 59.390 33.333 0.00 0.00 31.65 3.58
3377 6905 8.623903 GGTACATGAAACAATACATCATCACAT 58.376 33.333 0.00 0.00 31.65 3.21
3380 6908 9.932207 ACATGAAACAATACATCATCACATTTT 57.068 25.926 0.00 0.00 31.65 1.82
3383 6911 9.409312 TGAAACAATACATCATCACATTTTGAC 57.591 29.630 0.00 0.00 36.92 3.18
3384 6912 9.630098 GAAACAATACATCATCACATTTTGACT 57.370 29.630 0.00 0.00 36.92 3.41
3387 6915 9.453572 ACAATACATCATCACATTTTGACTAGT 57.546 29.630 0.00 0.00 36.92 2.57
3392 6920 8.454106 ACATCATCACATTTTGACTAGTAAAGC 58.546 33.333 0.00 0.00 36.92 3.51
3393 6921 7.977789 TCATCACATTTTGACTAGTAAAGCA 57.022 32.000 0.00 0.00 36.92 3.91
3394 6922 8.389779 TCATCACATTTTGACTAGTAAAGCAA 57.610 30.769 0.00 0.00 36.92 3.91
3395 6923 8.506437 TCATCACATTTTGACTAGTAAAGCAAG 58.494 33.333 0.00 0.00 36.92 4.01
3396 6924 7.202016 TCACATTTTGACTAGTAAAGCAAGG 57.798 36.000 0.00 0.00 0.00 3.61
3397 6925 5.858581 CACATTTTGACTAGTAAAGCAAGGC 59.141 40.000 0.00 0.00 0.00 4.35
3398 6926 5.048013 ACATTTTGACTAGTAAAGCAAGGCC 60.048 40.000 0.00 0.00 0.00 5.19
3399 6927 3.780804 TTGACTAGTAAAGCAAGGCCA 57.219 42.857 5.01 0.00 0.00 5.36
3400 6928 3.780804 TGACTAGTAAAGCAAGGCCAA 57.219 42.857 5.01 0.00 0.00 4.52
3401 6929 4.093472 TGACTAGTAAAGCAAGGCCAAA 57.907 40.909 5.01 0.00 0.00 3.28
3402 6930 4.072131 TGACTAGTAAAGCAAGGCCAAAG 58.928 43.478 5.01 0.00 0.00 2.77
3403 6931 4.202419 TGACTAGTAAAGCAAGGCCAAAGA 60.202 41.667 5.01 0.00 0.00 2.52
3404 6932 4.725490 ACTAGTAAAGCAAGGCCAAAGAA 58.275 39.130 5.01 0.00 0.00 2.52
3405 6933 5.137551 ACTAGTAAAGCAAGGCCAAAGAAA 58.862 37.500 5.01 0.00 0.00 2.52
3406 6934 5.596772 ACTAGTAAAGCAAGGCCAAAGAAAA 59.403 36.000 5.01 0.00 0.00 2.29
3407 6935 4.693283 AGTAAAGCAAGGCCAAAGAAAAC 58.307 39.130 5.01 0.00 0.00 2.43
3408 6936 3.625649 AAAGCAAGGCCAAAGAAAACA 57.374 38.095 5.01 0.00 0.00 2.83
3409 6937 3.625649 AAGCAAGGCCAAAGAAAACAA 57.374 38.095 5.01 0.00 0.00 2.83
3410 6938 3.183793 AGCAAGGCCAAAGAAAACAAG 57.816 42.857 5.01 0.00 0.00 3.16
3411 6939 2.765699 AGCAAGGCCAAAGAAAACAAGA 59.234 40.909 5.01 0.00 0.00 3.02
3412 6940 3.197549 AGCAAGGCCAAAGAAAACAAGAA 59.802 39.130 5.01 0.00 0.00 2.52
3413 6941 4.129380 GCAAGGCCAAAGAAAACAAGAAT 58.871 39.130 5.01 0.00 0.00 2.40
3414 6942 4.212004 GCAAGGCCAAAGAAAACAAGAATC 59.788 41.667 5.01 0.00 0.00 2.52
3415 6943 5.358922 CAAGGCCAAAGAAAACAAGAATCA 58.641 37.500 5.01 0.00 0.00 2.57
3416 6944 4.948847 AGGCCAAAGAAAACAAGAATCAC 58.051 39.130 5.01 0.00 0.00 3.06
3417 6945 4.405358 AGGCCAAAGAAAACAAGAATCACA 59.595 37.500 5.01 0.00 0.00 3.58
3418 6946 5.104982 AGGCCAAAGAAAACAAGAATCACAA 60.105 36.000 5.01 0.00 0.00 3.33
3419 6947 5.234972 GGCCAAAGAAAACAAGAATCACAAG 59.765 40.000 0.00 0.00 0.00 3.16
3420 6948 6.042143 GCCAAAGAAAACAAGAATCACAAGA 58.958 36.000 0.00 0.00 0.00 3.02
3421 6949 6.534793 GCCAAAGAAAACAAGAATCACAAGAA 59.465 34.615 0.00 0.00 0.00 2.52
3422 6950 7.225341 GCCAAAGAAAACAAGAATCACAAGAAT 59.775 33.333 0.00 0.00 0.00 2.40
3423 6951 9.748708 CCAAAGAAAACAAGAATCACAAGAATA 57.251 29.630 0.00 0.00 0.00 1.75
3455 6983 8.045176 AGAAAATATCTAACTTCCACAACTGC 57.955 34.615 0.00 0.00 36.32 4.40
3456 6984 7.885399 AGAAAATATCTAACTTCCACAACTGCT 59.115 33.333 0.00 0.00 36.32 4.24
3457 6985 7.617041 AAATATCTAACTTCCACAACTGCTC 57.383 36.000 0.00 0.00 0.00 4.26
3458 6986 3.402628 TCTAACTTCCACAACTGCTCC 57.597 47.619 0.00 0.00 0.00 4.70
3459 6987 2.038557 TCTAACTTCCACAACTGCTCCC 59.961 50.000 0.00 0.00 0.00 4.30
3460 6988 0.846693 AACTTCCACAACTGCTCCCT 59.153 50.000 0.00 0.00 0.00 4.20
3461 6989 0.846693 ACTTCCACAACTGCTCCCTT 59.153 50.000 0.00 0.00 0.00 3.95
3462 6990 1.242076 CTTCCACAACTGCTCCCTTG 58.758 55.000 0.00 0.00 0.00 3.61
3463 6991 0.843309 TTCCACAACTGCTCCCTTGA 59.157 50.000 0.00 0.00 0.00 3.02
3464 6992 0.397941 TCCACAACTGCTCCCTTGAG 59.602 55.000 0.00 0.00 41.84 3.02
3465 6993 0.109342 CCACAACTGCTCCCTTGAGT 59.891 55.000 0.00 0.00 40.95 3.41
3466 6994 1.477558 CCACAACTGCTCCCTTGAGTT 60.478 52.381 0.00 0.00 40.95 3.01
3468 6996 1.242076 CAACTGCTCCCTTGAGTTGG 58.758 55.000 0.00 0.00 41.86 3.77
3469 6997 0.111253 AACTGCTCCCTTGAGTTGGG 59.889 55.000 0.00 0.00 45.90 4.12
3470 6998 1.062488 ACTGCTCCCTTGAGTTGGGT 61.062 55.000 0.00 0.00 44.84 4.51
3471 6999 0.111253 CTGCTCCCTTGAGTTGGGTT 59.889 55.000 0.00 0.00 44.84 4.11
3472 7000 1.351017 CTGCTCCCTTGAGTTGGGTTA 59.649 52.381 0.00 0.00 44.84 2.85
3473 7001 1.351017 TGCTCCCTTGAGTTGGGTTAG 59.649 52.381 0.00 0.00 44.84 2.34
3474 7002 1.340114 GCTCCCTTGAGTTGGGTTAGG 60.340 57.143 0.00 0.00 44.84 2.69
3475 7003 1.282157 CTCCCTTGAGTTGGGTTAGGG 59.718 57.143 0.00 0.00 45.71 3.53
3476 7004 0.323451 CCCTTGAGTTGGGTTAGGGC 60.323 60.000 0.00 0.00 39.18 5.19
3477 7005 0.323451 CCTTGAGTTGGGTTAGGGCC 60.323 60.000 0.00 0.00 0.00 5.80
3478 7006 0.698818 CTTGAGTTGGGTTAGGGCCT 59.301 55.000 12.58 12.58 0.00 5.19
3479 7007 1.075536 CTTGAGTTGGGTTAGGGCCTT 59.924 52.381 13.45 0.00 0.00 4.35
3480 7008 0.696501 TGAGTTGGGTTAGGGCCTTC 59.303 55.000 13.45 5.52 0.00 3.46
3481 7009 0.992695 GAGTTGGGTTAGGGCCTTCT 59.007 55.000 13.45 0.00 0.00 2.85
3482 7010 0.992695 AGTTGGGTTAGGGCCTTCTC 59.007 55.000 13.45 6.33 0.00 2.87
3483 7011 0.392595 GTTGGGTTAGGGCCTTCTCG 60.393 60.000 13.45 0.00 0.00 4.04
3484 7012 0.545787 TTGGGTTAGGGCCTTCTCGA 60.546 55.000 13.45 2.32 0.00 4.04
3485 7013 0.326238 TGGGTTAGGGCCTTCTCGAT 60.326 55.000 13.45 0.00 0.00 3.59
3486 7014 0.106894 GGGTTAGGGCCTTCTCGATG 59.893 60.000 13.45 0.00 0.00 3.84
3487 7015 0.533085 GGTTAGGGCCTTCTCGATGC 60.533 60.000 13.45 0.00 0.00 3.91
3488 7016 0.178068 GTTAGGGCCTTCTCGATGCA 59.822 55.000 13.45 0.00 0.00 3.96
3489 7017 0.178068 TTAGGGCCTTCTCGATGCAC 59.822 55.000 13.45 0.00 0.00 4.57
3490 7018 0.687757 TAGGGCCTTCTCGATGCACT 60.688 55.000 13.45 6.42 42.45 4.40
3491 7019 1.522580 GGGCCTTCTCGATGCACTC 60.523 63.158 0.84 0.00 0.00 3.51
3492 7020 1.219124 GGCCTTCTCGATGCACTCA 59.781 57.895 0.00 0.00 0.00 3.41
3493 7021 0.179062 GGCCTTCTCGATGCACTCAT 60.179 55.000 0.00 0.00 35.17 2.90
3494 7022 1.661341 GCCTTCTCGATGCACTCATT 58.339 50.000 0.00 0.00 31.96 2.57
3495 7023 1.329906 GCCTTCTCGATGCACTCATTG 59.670 52.381 0.00 0.00 35.77 2.82
3496 7024 2.625737 CCTTCTCGATGCACTCATTGT 58.374 47.619 0.00 0.00 35.89 2.71
3497 7025 3.005554 CCTTCTCGATGCACTCATTGTT 58.994 45.455 0.00 0.00 35.89 2.83
3498 7026 3.181513 CCTTCTCGATGCACTCATTGTTG 60.182 47.826 0.00 0.00 35.89 3.33
3499 7027 3.317603 TCTCGATGCACTCATTGTTGA 57.682 42.857 0.00 0.00 35.89 3.18
3500 7028 3.865446 TCTCGATGCACTCATTGTTGAT 58.135 40.909 0.00 0.00 35.89 2.57
3501 7029 3.867493 TCTCGATGCACTCATTGTTGATC 59.133 43.478 0.00 0.00 35.89 2.92
3502 7030 3.865446 TCGATGCACTCATTGTTGATCT 58.135 40.909 0.00 0.00 35.89 2.75
3503 7031 3.619929 TCGATGCACTCATTGTTGATCTG 59.380 43.478 0.00 0.00 35.89 2.90
3504 7032 3.373130 CGATGCACTCATTGTTGATCTGT 59.627 43.478 0.00 0.00 31.96 3.41
3505 7033 4.659088 GATGCACTCATTGTTGATCTGTG 58.341 43.478 0.00 0.00 31.96 3.66
3506 7034 2.815503 TGCACTCATTGTTGATCTGTGG 59.184 45.455 0.00 0.00 30.29 4.17
3507 7035 3.076621 GCACTCATTGTTGATCTGTGGA 58.923 45.455 0.00 0.00 30.29 4.02
3508 7036 3.126514 GCACTCATTGTTGATCTGTGGAG 59.873 47.826 0.00 0.00 30.29 3.86
3509 7037 3.688185 CACTCATTGTTGATCTGTGGAGG 59.312 47.826 0.00 0.00 0.00 4.30
3510 7038 3.584406 ACTCATTGTTGATCTGTGGAGGA 59.416 43.478 0.00 0.00 0.00 3.71
3511 7039 4.190001 CTCATTGTTGATCTGTGGAGGAG 58.810 47.826 0.00 0.00 0.00 3.69
3512 7040 3.054875 TCATTGTTGATCTGTGGAGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
3513 7041 0.615331 TGTTGATCTGTGGAGGAGGC 59.385 55.000 0.00 0.00 0.00 4.70
3514 7042 0.908198 GTTGATCTGTGGAGGAGGCT 59.092 55.000 0.00 0.00 0.00 4.58
3515 7043 1.134551 GTTGATCTGTGGAGGAGGCTC 60.135 57.143 5.78 5.78 0.00 4.70
3516 7044 1.039785 TGATCTGTGGAGGAGGCTCG 61.040 60.000 8.69 0.00 0.00 5.03
3517 7045 0.753479 GATCTGTGGAGGAGGCTCGA 60.753 60.000 8.69 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.063510 TGCAAGAGAACCATTGGAGAG 57.936 47.619 10.37 0.00 0.00 3.20
157 159 3.393089 AGTGTACTGTTGCTCTCCAAG 57.607 47.619 0.00 0.00 33.21 3.61
466 475 9.745018 TGATTTATCCAATTGGGCATTTTTAAA 57.255 25.926 24.29 15.06 36.21 1.52
467 476 9.393512 CTGATTTATCCAATTGGGCATTTTTAA 57.606 29.630 24.29 1.71 36.21 1.52
520 537 4.947147 TGGACTTGGTGGCGTGCC 62.947 66.667 3.30 3.30 0.00 5.01
528 545 0.108585 AGTTGACGCATGGACTTGGT 59.891 50.000 0.00 0.00 0.00 3.67
549 566 1.746991 GAACCCTAGCAGCAGCCAC 60.747 63.158 0.00 0.00 43.56 5.01
794 846 2.350895 CCGACTGCACCATTCCCA 59.649 61.111 0.00 0.00 0.00 4.37
846 904 2.045242 ACTAGGACGAGCCGCTGA 60.045 61.111 0.00 0.00 43.43 4.26
914 982 1.371145 GCTAGATCCGACAGCTCGC 60.371 63.158 0.00 0.00 38.70 5.03
924 992 9.419297 TGTTTTATATGTATTGACGCTAGATCC 57.581 33.333 0.00 0.00 0.00 3.36
1015 1084 2.305635 TCACATGCAGATTGGTACCACT 59.694 45.455 16.04 9.86 0.00 4.00
1050 1119 5.360591 CAGGAGTTAATTGCGGAGAAGTAT 58.639 41.667 0.00 0.00 0.00 2.12
1058 1127 1.133025 CTTGGCAGGAGTTAATTGCGG 59.867 52.381 0.00 0.00 38.69 5.69
1059 1128 1.133025 CCTTGGCAGGAGTTAATTGCG 59.867 52.381 0.00 0.00 44.19 4.85
1074 1143 0.737715 GAGCTCGCACACTACCTTGG 60.738 60.000 0.00 0.00 0.00 3.61
1106 1175 2.682136 TGCTAGCACTACCGGCCA 60.682 61.111 14.93 0.00 0.00 5.36
1114 1183 1.005332 TCTCCACTCTCTGCTAGCACT 59.995 52.381 14.93 0.00 0.00 4.40
1123 1192 2.760092 GCATCTTCAGTCTCCACTCTCT 59.240 50.000 0.00 0.00 0.00 3.10
1136 1205 2.437180 CCGCCTGCAGCATCTTCA 60.437 61.111 8.66 0.00 44.04 3.02
1402 1471 2.581354 GAGGTGCAGCACGAGGAT 59.419 61.111 19.42 2.63 34.83 3.24
1477 1546 3.403558 GAGGAGGTGGAGGGGCAC 61.404 72.222 0.00 0.00 0.00 5.01
1743 2252 1.134759 TGTTAATTACTAGCGGCGGCA 60.135 47.619 19.21 3.77 43.41 5.69
1815 2337 3.286751 GCAAGCTTGGACACCGCA 61.287 61.111 27.10 0.00 0.00 5.69
1962 2578 0.039074 AGAGCAACACGAAGACGAGG 60.039 55.000 0.00 0.00 42.66 4.63
2018 2639 2.369860 ACAGAGACATGGAGCAGTTGAA 59.630 45.455 0.00 0.00 0.00 2.69
2065 2755 2.035626 GTAAGCAGGCCAGGGCAA 59.964 61.111 16.94 0.00 44.11 4.52
2258 3053 1.676746 CTTGAGGCACAGATCATGGG 58.323 55.000 0.00 0.00 34.36 4.00
2259 3054 1.022735 GCTTGAGGCACAGATCATGG 58.977 55.000 0.00 0.00 41.35 3.66
2318 4552 4.756642 TGATGGACACAAAGCAAAGTAGAG 59.243 41.667 0.00 0.00 0.00 2.43
2319 4553 4.713553 TGATGGACACAAAGCAAAGTAGA 58.286 39.130 0.00 0.00 0.00 2.59
2320 4554 5.215160 GTTGATGGACACAAAGCAAAGTAG 58.785 41.667 0.00 0.00 0.00 2.57
2321 4555 4.037446 GGTTGATGGACACAAAGCAAAGTA 59.963 41.667 0.00 0.00 0.00 2.24
2322 4556 3.181476 GGTTGATGGACACAAAGCAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
2323 4557 3.383761 GGTTGATGGACACAAAGCAAAG 58.616 45.455 0.00 0.00 0.00 2.77
2324 4558 2.223688 CGGTTGATGGACACAAAGCAAA 60.224 45.455 0.00 0.00 0.00 3.68
2325 4559 1.336440 CGGTTGATGGACACAAAGCAA 59.664 47.619 0.00 0.00 0.00 3.91
2326 4560 0.950836 CGGTTGATGGACACAAAGCA 59.049 50.000 0.00 0.00 0.00 3.91
2327 4561 0.951558 ACGGTTGATGGACACAAAGC 59.048 50.000 0.00 0.00 0.00 3.51
2360 4602 2.094597 TGTTACATTCTTGGCATGCAGC 60.095 45.455 21.36 3.15 44.65 5.25
2363 4605 2.861935 GCATGTTACATTCTTGGCATGC 59.138 45.455 9.90 9.90 43.34 4.06
2364 4606 3.861113 GTGCATGTTACATTCTTGGCATG 59.139 43.478 9.82 0.00 36.04 4.06
2365 4607 3.510753 TGTGCATGTTACATTCTTGGCAT 59.489 39.130 9.82 0.00 0.00 4.40
2366 4608 2.889678 TGTGCATGTTACATTCTTGGCA 59.110 40.909 3.65 3.65 0.00 4.92
2443 4723 0.689623 ACAGTCCCAGCTCTTCCTTG 59.310 55.000 0.00 0.00 0.00 3.61
2483 4763 7.484975 ACAAGAAGATATGAGTAGTACTGCAC 58.515 38.462 13.75 7.59 0.00 4.57
2484 4764 7.646548 ACAAGAAGATATGAGTAGTACTGCA 57.353 36.000 13.75 6.25 0.00 4.41
2521 4809 4.263506 ACCAGCAAGTCAATAAGCCTAGTT 60.264 41.667 0.00 0.00 0.00 2.24
2528 4850 1.398390 GCCGACCAGCAAGTCAATAAG 59.602 52.381 6.90 0.00 36.52 1.73
2540 4862 2.040213 GATTGCATGACGCCGACCAG 62.040 60.000 0.00 0.00 41.33 4.00
2548 4870 7.976175 AGTATACCTGTATATGATTGCATGACG 59.024 37.037 0.00 0.00 35.94 4.35
2598 5101 0.907704 ACAATACAGGAGTCCGGCCA 60.908 55.000 9.48 0.00 0.00 5.36
2690 5226 3.188100 GCTGAGCGTGCGTGCATA 61.188 61.111 0.00 0.00 37.31 3.14
2855 6337 4.096003 CCGTCCCAAGCATCGGGT 62.096 66.667 5.15 0.00 44.81 5.28
2966 6486 1.152922 AACGCCAAGGGAAAACGGA 60.153 52.632 0.00 0.00 0.00 4.69
2996 6517 2.344203 CGGAGGCCTCGTCAGTTCT 61.344 63.158 26.36 0.00 0.00 3.01
3013 6534 3.499737 GAAGCCATGCGTCCCACG 61.500 66.667 0.00 0.00 45.88 4.94
3020 6541 0.392193 AGACAGGAAGAAGCCATGCG 60.392 55.000 0.00 0.00 0.00 4.73
3153 6681 2.356793 CGCTCGATGGAGATGGCC 60.357 66.667 9.17 0.00 43.27 5.36
3154 6682 2.356793 CCGCTCGATGGAGATGGC 60.357 66.667 9.17 0.00 43.27 4.40
3155 6683 2.356793 GCCGCTCGATGGAGATGG 60.357 66.667 9.17 10.12 43.27 3.51
3156 6684 2.356793 GGCCGCTCGATGGAGATG 60.357 66.667 9.17 0.00 43.27 2.90
3157 6685 3.620785 GGGCCGCTCGATGGAGAT 61.621 66.667 9.17 0.00 43.27 2.75
3161 6689 4.794648 TTTGGGGCCGCTCGATGG 62.795 66.667 21.80 0.00 0.00 3.51
3162 6690 3.508840 GTTTGGGGCCGCTCGATG 61.509 66.667 21.80 0.00 0.00 3.84
3163 6691 4.796495 GGTTTGGGGCCGCTCGAT 62.796 66.667 21.80 0.00 0.00 3.59
3172 6700 3.812865 AACGGACGTCGGTTTGGGG 62.813 63.158 29.31 6.37 44.45 4.96
3173 6701 2.280321 AACGGACGTCGGTTTGGG 60.280 61.111 29.31 7.61 44.45 4.12
3178 6706 2.968697 GGCAAAACGGACGTCGGT 60.969 61.111 21.64 21.64 44.45 4.69
3179 6707 3.719144 GGGCAAAACGGACGTCGG 61.719 66.667 20.28 20.28 44.45 4.79
3180 6708 4.067016 CGGGCAAAACGGACGTCG 62.067 66.667 9.92 7.64 45.88 5.12
3187 6715 0.168128 GACAGAATCCGGGCAAAACG 59.832 55.000 0.00 0.00 0.00 3.60
3188 6716 0.526211 GGACAGAATCCGGGCAAAAC 59.474 55.000 0.00 0.00 37.88 2.43
3189 6717 2.955609 GGACAGAATCCGGGCAAAA 58.044 52.632 0.00 0.00 37.88 2.44
3190 6718 4.734652 GGACAGAATCCGGGCAAA 57.265 55.556 0.00 0.00 37.88 3.68
3197 6725 3.522553 CCTACTCAAACGGACAGAATCC 58.477 50.000 0.00 0.00 45.20 3.01
3198 6726 3.522553 CCCTACTCAAACGGACAGAATC 58.477 50.000 0.00 0.00 0.00 2.52
3199 6727 2.354805 GCCCTACTCAAACGGACAGAAT 60.355 50.000 0.00 0.00 0.00 2.40
3200 6728 1.001633 GCCCTACTCAAACGGACAGAA 59.998 52.381 0.00 0.00 0.00 3.02
3201 6729 0.606604 GCCCTACTCAAACGGACAGA 59.393 55.000 0.00 0.00 0.00 3.41
3202 6730 0.320374 TGCCCTACTCAAACGGACAG 59.680 55.000 0.00 0.00 0.00 3.51
3203 6731 0.981183 ATGCCCTACTCAAACGGACA 59.019 50.000 0.00 0.00 0.00 4.02
3204 6732 1.737793 CAATGCCCTACTCAAACGGAC 59.262 52.381 0.00 0.00 0.00 4.79
3205 6733 1.339631 CCAATGCCCTACTCAAACGGA 60.340 52.381 0.00 0.00 0.00 4.69
3206 6734 1.094785 CCAATGCCCTACTCAAACGG 58.905 55.000 0.00 0.00 0.00 4.44
3207 6735 1.094785 CCCAATGCCCTACTCAAACG 58.905 55.000 0.00 0.00 0.00 3.60
3208 6736 1.272480 ACCCCAATGCCCTACTCAAAC 60.272 52.381 0.00 0.00 0.00 2.93
3209 6737 1.080638 ACCCCAATGCCCTACTCAAA 58.919 50.000 0.00 0.00 0.00 2.69
3210 6738 1.080638 AACCCCAATGCCCTACTCAA 58.919 50.000 0.00 0.00 0.00 3.02
3211 6739 0.331278 CAACCCCAATGCCCTACTCA 59.669 55.000 0.00 0.00 0.00 3.41
3212 6740 0.331616 ACAACCCCAATGCCCTACTC 59.668 55.000 0.00 0.00 0.00 2.59
3213 6741 0.039618 CACAACCCCAATGCCCTACT 59.960 55.000 0.00 0.00 0.00 2.57
3214 6742 0.251608 ACACAACCCCAATGCCCTAC 60.252 55.000 0.00 0.00 0.00 3.18
3215 6743 0.039035 GACACAACCCCAATGCCCTA 59.961 55.000 0.00 0.00 0.00 3.53
3216 6744 1.228862 GACACAACCCCAATGCCCT 60.229 57.895 0.00 0.00 0.00 5.19
3217 6745 2.282783 GGACACAACCCCAATGCCC 61.283 63.158 0.00 0.00 0.00 5.36
3218 6746 2.635443 CGGACACAACCCCAATGCC 61.635 63.158 0.00 0.00 0.00 4.40
3219 6747 2.635443 CCGGACACAACCCCAATGC 61.635 63.158 0.00 0.00 0.00 3.56
3220 6748 1.976474 CCCGGACACAACCCCAATG 60.976 63.158 0.73 0.00 0.00 2.82
3221 6749 2.438795 CCCGGACACAACCCCAAT 59.561 61.111 0.73 0.00 0.00 3.16
3222 6750 4.589675 GCCCGGACACAACCCCAA 62.590 66.667 0.73 0.00 0.00 4.12
3225 6753 3.785122 AACTGCCCGGACACAACCC 62.785 63.158 0.73 0.00 0.00 4.11
3226 6754 1.388837 AAAACTGCCCGGACACAACC 61.389 55.000 0.73 0.00 0.00 3.77
3227 6755 0.030235 GAAAACTGCCCGGACACAAC 59.970 55.000 0.73 0.00 0.00 3.32
3228 6756 1.440938 CGAAAACTGCCCGGACACAA 61.441 55.000 0.73 0.00 0.00 3.33
3229 6757 1.890041 CGAAAACTGCCCGGACACA 60.890 57.895 0.73 0.00 0.00 3.72
3230 6758 2.613506 CCGAAAACTGCCCGGACAC 61.614 63.158 0.73 0.00 45.58 3.67
3231 6759 2.281208 CCGAAAACTGCCCGGACA 60.281 61.111 0.73 0.00 45.58 4.02
3232 6760 2.814913 ATCCCGAAAACTGCCCGGAC 62.815 60.000 0.73 0.00 45.58 4.79
3233 6761 2.598787 ATCCCGAAAACTGCCCGGA 61.599 57.895 0.73 0.00 45.58 5.14
3234 6762 2.045340 ATCCCGAAAACTGCCCGG 60.045 61.111 0.00 0.00 42.64 5.73
3235 6763 3.051392 GCATCCCGAAAACTGCCCG 62.051 63.158 0.00 0.00 0.00 6.13
3236 6764 2.885113 GCATCCCGAAAACTGCCC 59.115 61.111 0.00 0.00 0.00 5.36
3237 6765 2.485122 CGCATCCCGAAAACTGCC 59.515 61.111 0.00 0.00 40.02 4.85
3238 6766 2.332654 ACCGCATCCCGAAAACTGC 61.333 57.895 0.00 0.00 40.02 4.40
3239 6767 1.501741 CACCGCATCCCGAAAACTG 59.498 57.895 0.00 0.00 40.02 3.16
3240 6768 1.674322 CCACCGCATCCCGAAAACT 60.674 57.895 0.00 0.00 40.02 2.66
3241 6769 2.874751 CCACCGCATCCCGAAAAC 59.125 61.111 0.00 0.00 40.02 2.43
3242 6770 3.059386 GCCACCGCATCCCGAAAA 61.059 61.111 0.00 0.00 40.02 2.29
3292 6820 1.647545 AAATGCACGCGGACAGGATG 61.648 55.000 12.47 0.00 46.00 3.51
3293 6821 0.960364 AAAATGCACGCGGACAGGAT 60.960 50.000 12.47 0.69 0.00 3.24
3294 6822 1.169661 AAAAATGCACGCGGACAGGA 61.170 50.000 12.47 0.00 0.00 3.86
3295 6823 0.729140 GAAAAATGCACGCGGACAGG 60.729 55.000 12.47 0.00 0.00 4.00
3296 6824 0.238289 AGAAAAATGCACGCGGACAG 59.762 50.000 12.47 0.00 0.00 3.51
3297 6825 0.665835 AAGAAAAATGCACGCGGACA 59.334 45.000 12.47 8.69 0.00 4.02
3298 6826 1.451651 CAAAGAAAAATGCACGCGGAC 59.548 47.619 12.47 1.50 0.00 4.79
3299 6827 1.764851 CAAAGAAAAATGCACGCGGA 58.235 45.000 12.47 0.00 0.00 5.54
3300 6828 0.161446 GCAAAGAAAAATGCACGCGG 59.839 50.000 12.47 0.00 42.12 6.46
3301 6829 0.851495 TGCAAAGAAAAATGCACGCG 59.149 45.000 3.53 3.53 46.87 6.01
3347 6875 9.853555 GATGATGTATTGTTTCATGTACCAAAA 57.146 29.630 0.00 0.00 30.48 2.44
3348 6876 9.018582 TGATGATGTATTGTTTCATGTACCAAA 57.981 29.630 0.00 0.00 30.48 3.28
3349 6877 8.458052 GTGATGATGTATTGTTTCATGTACCAA 58.542 33.333 0.00 0.00 30.48 3.67
3350 6878 7.609532 TGTGATGATGTATTGTTTCATGTACCA 59.390 33.333 0.00 0.00 30.48 3.25
3351 6879 7.984391 TGTGATGATGTATTGTTTCATGTACC 58.016 34.615 0.00 0.00 30.48 3.34
3354 6882 9.932207 AAAATGTGATGATGTATTGTTTCATGT 57.068 25.926 0.00 0.00 30.48 3.21
3357 6885 9.409312 GTCAAAATGTGATGATGTATTGTTTCA 57.591 29.630 0.00 0.00 38.90 2.69
3358 6886 9.630098 AGTCAAAATGTGATGATGTATTGTTTC 57.370 29.630 0.00 0.00 38.90 2.78
3361 6889 9.453572 ACTAGTCAAAATGTGATGATGTATTGT 57.546 29.630 0.00 0.00 38.90 2.71
3366 6894 8.454106 GCTTTACTAGTCAAAATGTGATGATGT 58.546 33.333 0.00 0.00 38.90 3.06
3367 6895 8.453320 TGCTTTACTAGTCAAAATGTGATGATG 58.547 33.333 0.00 0.00 38.90 3.07
3368 6896 8.565896 TGCTTTACTAGTCAAAATGTGATGAT 57.434 30.769 0.00 0.00 38.90 2.45
3369 6897 7.977789 TGCTTTACTAGTCAAAATGTGATGA 57.022 32.000 0.00 0.00 38.90 2.92
3370 6898 7.752239 CCTTGCTTTACTAGTCAAAATGTGATG 59.248 37.037 0.00 0.00 38.90 3.07
3371 6899 7.575720 GCCTTGCTTTACTAGTCAAAATGTGAT 60.576 37.037 0.00 0.00 38.90 3.06
3372 6900 6.293955 GCCTTGCTTTACTAGTCAAAATGTGA 60.294 38.462 0.00 0.00 0.00 3.58
3373 6901 5.858581 GCCTTGCTTTACTAGTCAAAATGTG 59.141 40.000 0.00 0.00 0.00 3.21
3374 6902 5.048013 GGCCTTGCTTTACTAGTCAAAATGT 60.048 40.000 0.00 0.00 0.00 2.71
3375 6903 5.048083 TGGCCTTGCTTTACTAGTCAAAATG 60.048 40.000 3.32 0.00 0.00 2.32
3376 6904 5.076873 TGGCCTTGCTTTACTAGTCAAAAT 58.923 37.500 3.32 0.00 0.00 1.82
3377 6905 4.465886 TGGCCTTGCTTTACTAGTCAAAA 58.534 39.130 3.32 0.00 0.00 2.44
3378 6906 4.093472 TGGCCTTGCTTTACTAGTCAAA 57.907 40.909 3.32 0.00 0.00 2.69
3379 6907 3.780804 TGGCCTTGCTTTACTAGTCAA 57.219 42.857 3.32 0.00 0.00 3.18
3380 6908 3.780804 TTGGCCTTGCTTTACTAGTCA 57.219 42.857 3.32 0.00 0.00 3.41
3381 6909 4.324267 TCTTTGGCCTTGCTTTACTAGTC 58.676 43.478 3.32 0.00 0.00 2.59
3382 6910 4.367039 TCTTTGGCCTTGCTTTACTAGT 57.633 40.909 3.32 0.00 0.00 2.57
3383 6911 5.705609 TTTCTTTGGCCTTGCTTTACTAG 57.294 39.130 3.32 0.00 0.00 2.57
3384 6912 5.361285 TGTTTTCTTTGGCCTTGCTTTACTA 59.639 36.000 3.32 0.00 0.00 1.82
3385 6913 4.161377 TGTTTTCTTTGGCCTTGCTTTACT 59.839 37.500 3.32 0.00 0.00 2.24
3386 6914 4.438148 TGTTTTCTTTGGCCTTGCTTTAC 58.562 39.130 3.32 0.00 0.00 2.01
3387 6915 4.744795 TGTTTTCTTTGGCCTTGCTTTA 57.255 36.364 3.32 0.00 0.00 1.85
3388 6916 3.625649 TGTTTTCTTTGGCCTTGCTTT 57.374 38.095 3.32 0.00 0.00 3.51
3389 6917 3.197549 TCTTGTTTTCTTTGGCCTTGCTT 59.802 39.130 3.32 0.00 0.00 3.91
3390 6918 2.765699 TCTTGTTTTCTTTGGCCTTGCT 59.234 40.909 3.32 0.00 0.00 3.91
3391 6919 3.177997 TCTTGTTTTCTTTGGCCTTGC 57.822 42.857 3.32 0.00 0.00 4.01
3392 6920 5.234972 GTGATTCTTGTTTTCTTTGGCCTTG 59.765 40.000 3.32 0.00 0.00 3.61
3393 6921 5.104982 TGTGATTCTTGTTTTCTTTGGCCTT 60.105 36.000 3.32 0.00 0.00 4.35
3394 6922 4.405358 TGTGATTCTTGTTTTCTTTGGCCT 59.595 37.500 3.32 0.00 0.00 5.19
3395 6923 4.692228 TGTGATTCTTGTTTTCTTTGGCC 58.308 39.130 0.00 0.00 0.00 5.36
3396 6924 6.042143 TCTTGTGATTCTTGTTTTCTTTGGC 58.958 36.000 0.00 0.00 0.00 4.52
3397 6925 8.652810 ATTCTTGTGATTCTTGTTTTCTTTGG 57.347 30.769 0.00 0.00 0.00 3.28
3429 6957 8.515414 GCAGTTGTGGAAGTTAGATATTTTCTT 58.485 33.333 0.00 0.00 35.79 2.52
3430 6958 7.885399 AGCAGTTGTGGAAGTTAGATATTTTCT 59.115 33.333 0.00 0.00 38.57 2.52
3431 6959 8.045176 AGCAGTTGTGGAAGTTAGATATTTTC 57.955 34.615 0.00 0.00 0.00 2.29
3432 6960 7.121315 GGAGCAGTTGTGGAAGTTAGATATTTT 59.879 37.037 0.00 0.00 0.00 1.82
3433 6961 6.599638 GGAGCAGTTGTGGAAGTTAGATATTT 59.400 38.462 0.00 0.00 0.00 1.40
3434 6962 6.116126 GGAGCAGTTGTGGAAGTTAGATATT 58.884 40.000 0.00 0.00 0.00 1.28
3435 6963 5.396884 GGGAGCAGTTGTGGAAGTTAGATAT 60.397 44.000 0.00 0.00 0.00 1.63
3436 6964 4.081087 GGGAGCAGTTGTGGAAGTTAGATA 60.081 45.833 0.00 0.00 0.00 1.98
3437 6965 3.307762 GGGAGCAGTTGTGGAAGTTAGAT 60.308 47.826 0.00 0.00 0.00 1.98
3438 6966 2.038557 GGGAGCAGTTGTGGAAGTTAGA 59.961 50.000 0.00 0.00 0.00 2.10
3439 6967 2.039084 AGGGAGCAGTTGTGGAAGTTAG 59.961 50.000 0.00 0.00 0.00 2.34
3440 6968 2.054799 AGGGAGCAGTTGTGGAAGTTA 58.945 47.619 0.00 0.00 0.00 2.24
3441 6969 0.846693 AGGGAGCAGTTGTGGAAGTT 59.153 50.000 0.00 0.00 0.00 2.66
3442 6970 0.846693 AAGGGAGCAGTTGTGGAAGT 59.153 50.000 0.00 0.00 0.00 3.01
3443 6971 1.202806 TCAAGGGAGCAGTTGTGGAAG 60.203 52.381 0.00 0.00 0.00 3.46
3444 6972 0.843309 TCAAGGGAGCAGTTGTGGAA 59.157 50.000 0.00 0.00 0.00 3.53
3445 6973 0.397941 CTCAAGGGAGCAGTTGTGGA 59.602 55.000 0.00 0.00 33.67 4.02
3446 6974 0.109342 ACTCAAGGGAGCAGTTGTGG 59.891 55.000 0.00 0.00 45.42 4.17
3447 6975 1.605710 CAACTCAAGGGAGCAGTTGTG 59.394 52.381 3.37 0.00 45.42 3.33
3448 6976 1.477558 CCAACTCAAGGGAGCAGTTGT 60.478 52.381 9.53 0.00 45.42 3.32
3449 6977 1.242076 CCAACTCAAGGGAGCAGTTG 58.758 55.000 4.39 4.39 45.42 3.16
3450 6978 3.733709 CCAACTCAAGGGAGCAGTT 57.266 52.632 0.00 0.00 45.42 3.16
3458 6986 0.323451 GGCCCTAACCCAACTCAAGG 60.323 60.000 0.00 0.00 0.00 3.61
3459 6987 0.698818 AGGCCCTAACCCAACTCAAG 59.301 55.000 0.00 0.00 0.00 3.02
3460 6988 1.074889 GAAGGCCCTAACCCAACTCAA 59.925 52.381 0.00 0.00 0.00 3.02
3461 6989 0.696501 GAAGGCCCTAACCCAACTCA 59.303 55.000 0.00 0.00 0.00 3.41
3462 6990 0.992695 AGAAGGCCCTAACCCAACTC 59.007 55.000 0.00 0.00 0.00 3.01
3463 6991 0.992695 GAGAAGGCCCTAACCCAACT 59.007 55.000 0.00 0.00 0.00 3.16
3464 6992 0.392595 CGAGAAGGCCCTAACCCAAC 60.393 60.000 0.00 0.00 0.00 3.77
3465 6993 0.545787 TCGAGAAGGCCCTAACCCAA 60.546 55.000 0.00 0.00 0.00 4.12
3466 6994 0.326238 ATCGAGAAGGCCCTAACCCA 60.326 55.000 0.00 0.00 0.00 4.51
3467 6995 0.106894 CATCGAGAAGGCCCTAACCC 59.893 60.000 0.00 0.00 0.00 4.11
3468 6996 0.533085 GCATCGAGAAGGCCCTAACC 60.533 60.000 0.00 0.00 0.00 2.85
3469 6997 0.178068 TGCATCGAGAAGGCCCTAAC 59.822 55.000 0.00 0.00 0.00 2.34
3470 6998 0.178068 GTGCATCGAGAAGGCCCTAA 59.822 55.000 0.00 0.00 0.00 2.69
3471 6999 0.687757 AGTGCATCGAGAAGGCCCTA 60.688 55.000 0.00 0.00 0.00 3.53
3472 7000 1.965754 GAGTGCATCGAGAAGGCCCT 61.966 60.000 0.00 0.00 0.00 5.19
3473 7001 1.522580 GAGTGCATCGAGAAGGCCC 60.523 63.158 0.00 0.00 0.00 5.80
3474 7002 0.179062 ATGAGTGCATCGAGAAGGCC 60.179 55.000 0.00 0.00 0.00 5.19
3475 7003 1.329906 CAATGAGTGCATCGAGAAGGC 59.670 52.381 0.00 0.00 32.35 4.35
3476 7004 2.625737 ACAATGAGTGCATCGAGAAGG 58.374 47.619 0.00 0.00 32.35 3.46
3477 7005 3.681417 TCAACAATGAGTGCATCGAGAAG 59.319 43.478 0.00 0.00 32.35 2.85
3478 7006 3.663025 TCAACAATGAGTGCATCGAGAA 58.337 40.909 0.00 0.00 32.35 2.87
3479 7007 3.317603 TCAACAATGAGTGCATCGAGA 57.682 42.857 0.00 0.00 32.35 4.04
3480 7008 3.869832 AGATCAACAATGAGTGCATCGAG 59.130 43.478 0.00 0.00 39.39 4.04
3481 7009 3.619929 CAGATCAACAATGAGTGCATCGA 59.380 43.478 0.00 0.00 39.39 3.59
3482 7010 3.373130 ACAGATCAACAATGAGTGCATCG 59.627 43.478 0.00 0.00 39.39 3.84
3483 7011 4.438336 CCACAGATCAACAATGAGTGCATC 60.438 45.833 0.00 0.00 39.39 3.91
3484 7012 3.442625 CCACAGATCAACAATGAGTGCAT 59.557 43.478 0.00 0.00 39.39 3.96
3485 7013 2.815503 CCACAGATCAACAATGAGTGCA 59.184 45.455 0.00 0.00 39.39 4.57
3486 7014 3.076621 TCCACAGATCAACAATGAGTGC 58.923 45.455 0.00 0.00 39.39 4.40
3487 7015 3.688185 CCTCCACAGATCAACAATGAGTG 59.312 47.826 0.00 0.00 39.39 3.51
3488 7016 3.584406 TCCTCCACAGATCAACAATGAGT 59.416 43.478 0.00 0.00 39.39 3.41
3489 7017 4.190001 CTCCTCCACAGATCAACAATGAG 58.810 47.826 0.00 0.00 39.39 2.90
3490 7018 3.054875 CCTCCTCCACAGATCAACAATGA 60.055 47.826 0.00 0.00 40.57 2.57
3491 7019 3.276857 CCTCCTCCACAGATCAACAATG 58.723 50.000 0.00 0.00 0.00 2.82
3492 7020 2.356535 GCCTCCTCCACAGATCAACAAT 60.357 50.000 0.00 0.00 0.00 2.71
3493 7021 1.003580 GCCTCCTCCACAGATCAACAA 59.996 52.381 0.00 0.00 0.00 2.83
3494 7022 0.615331 GCCTCCTCCACAGATCAACA 59.385 55.000 0.00 0.00 0.00 3.33
3495 7023 0.908198 AGCCTCCTCCACAGATCAAC 59.092 55.000 0.00 0.00 0.00 3.18
3496 7024 1.198713 GAGCCTCCTCCACAGATCAA 58.801 55.000 0.00 0.00 31.68 2.57
3497 7025 1.039785 CGAGCCTCCTCCACAGATCA 61.040 60.000 0.00 0.00 34.49 2.92
3498 7026 0.753479 TCGAGCCTCCTCCACAGATC 60.753 60.000 0.00 0.00 34.49 2.75
3499 7027 1.307986 TCGAGCCTCCTCCACAGAT 59.692 57.895 0.00 0.00 34.49 2.90
3500 7028 2.763902 TCGAGCCTCCTCCACAGA 59.236 61.111 0.00 0.00 34.49 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.