Multiple sequence alignment - TraesCS4B01G358100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G358100 chr4B 100.000 4139 0 0 1 4139 648513058 648517196 0.000000e+00 7644.0
1 TraesCS4B01G358100 chr4B 98.765 243 3 0 1 243 648583956 648584198 2.290000e-117 433.0
2 TraesCS4B01G358100 chr4D 92.675 2744 120 32 576 3303 503409271 503411949 0.000000e+00 3879.0
3 TraesCS4B01G358100 chr4D 88.296 769 74 12 2286 3054 481551576 481552328 0.000000e+00 907.0
4 TraesCS4B01G358100 chr4D 91.453 234 11 2 293 519 503408677 503408908 3.110000e-81 313.0
5 TraesCS4B01G358100 chr4D 88.571 245 28 0 6 250 503397283 503397527 8.700000e-77 298.0
6 TraesCS4B01G358100 chr4D 93.878 49 2 1 3465 3513 88116357 88116404 5.740000e-09 73.1
7 TraesCS4B01G358100 chr3D 83.995 2268 270 50 990 3226 502144638 502146843 0.000000e+00 2091.0
8 TraesCS4B01G358100 chr3A 82.747 2417 284 71 990 3370 641629503 641631822 0.000000e+00 2030.0
9 TraesCS4B01G358100 chr3B 83.632 2230 264 58 990 3187 663420803 663422963 0.000000e+00 2002.0
10 TraesCS4B01G358100 chr3B 78.151 714 97 33 3403 4067 803440343 803441046 2.320000e-107 399.0
11 TraesCS4B01G358100 chr3B 80.870 115 21 1 3403 3517 609306040 609306153 5.700000e-14 89.8
12 TraesCS4B01G358100 chr5A 93.220 1298 52 8 1289 2550 687738539 687737242 0.000000e+00 1877.0
13 TraesCS4B01G358100 chr5A 86.395 860 57 22 2543 3397 687743740 687744544 0.000000e+00 885.0
14 TraesCS4B01G358100 chr5A 88.262 656 39 16 669 1298 687731466 687732109 0.000000e+00 750.0
15 TraesCS4B01G358100 chr5A 84.005 769 105 15 2287 3054 518028329 518027578 0.000000e+00 723.0
16 TraesCS4B01G358100 chr5A 89.268 205 19 3 6 208 687716627 687716830 1.910000e-63 254.0
17 TraesCS4B01G358100 chr5A 77.254 488 71 26 3562 4030 12021059 12021525 2.470000e-62 250.0
18 TraesCS4B01G358100 chr6D 86.912 787 68 18 2286 3054 288463183 288463952 0.000000e+00 850.0
19 TraesCS4B01G358100 chr6D 87.256 769 63 20 2286 3054 62249700 62248967 0.000000e+00 845.0
20 TraesCS4B01G358100 chr6D 81.907 713 80 24 3388 4067 454014313 454015009 1.300000e-154 556.0
21 TraesCS4B01G358100 chr6D 78.779 721 96 29 3388 4064 7244925 7245632 8.220000e-117 431.0
22 TraesCS4B01G358100 chr4A 86.701 767 84 14 2289 3054 127169899 127169150 0.000000e+00 835.0
23 TraesCS4B01G358100 chr4A 76.505 681 105 42 3403 4037 710850452 710851123 1.860000e-83 320.0
24 TraesCS4B01G358100 chr5B 82.521 698 88 17 3398 4064 470515714 470516408 2.140000e-162 582.0
25 TraesCS4B01G358100 chr5B 79.641 167 30 3 3398 3561 579598883 579599048 2.610000e-22 117.0
26 TraesCS4B01G358100 chr6B 83.155 653 74 22 3409 4030 690026189 690026836 7.770000e-157 564.0
27 TraesCS4B01G358100 chr2B 78.824 765 108 34 3412 4135 202289280 202290031 2.250000e-127 466.0
28 TraesCS4B01G358100 chr2B 82.231 484 64 19 3555 4033 707593556 707593090 8.340000e-107 398.0
29 TraesCS4B01G358100 chr6A 83.432 507 65 13 3565 4064 2980562 2980068 1.750000e-123 453.0
30 TraesCS4B01G358100 chr1A 79.452 657 86 26 3453 4070 572220133 572220779 1.780000e-113 420.0
31 TraesCS4B01G358100 chr2D 81.310 519 72 18 3561 4062 589508097 589507587 8.340000e-107 398.0
32 TraesCS4B01G358100 chr2A 77.179 390 56 18 3437 3797 579442797 579443182 3.260000e-46 196.0
33 TraesCS4B01G358100 chr1B 83.146 89 14 1 3412 3500 469616253 469616340 3.430000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G358100 chr4B 648513058 648517196 4138 False 7644 7644 100.000 1 4139 1 chr4B.!!$F1 4138
1 TraesCS4B01G358100 chr4D 503408677 503411949 3272 False 2096 3879 92.064 293 3303 2 chr4D.!!$F4 3010
2 TraesCS4B01G358100 chr4D 481551576 481552328 752 False 907 907 88.296 2286 3054 1 chr4D.!!$F2 768
3 TraesCS4B01G358100 chr3D 502144638 502146843 2205 False 2091 2091 83.995 990 3226 1 chr3D.!!$F1 2236
4 TraesCS4B01G358100 chr3A 641629503 641631822 2319 False 2030 2030 82.747 990 3370 1 chr3A.!!$F1 2380
5 TraesCS4B01G358100 chr3B 663420803 663422963 2160 False 2002 2002 83.632 990 3187 1 chr3B.!!$F2 2197
6 TraesCS4B01G358100 chr3B 803440343 803441046 703 False 399 399 78.151 3403 4067 1 chr3B.!!$F3 664
7 TraesCS4B01G358100 chr5A 687737242 687738539 1297 True 1877 1877 93.220 1289 2550 1 chr5A.!!$R2 1261
8 TraesCS4B01G358100 chr5A 687743740 687744544 804 False 885 885 86.395 2543 3397 1 chr5A.!!$F4 854
9 TraesCS4B01G358100 chr5A 687731466 687732109 643 False 750 750 88.262 669 1298 1 chr5A.!!$F3 629
10 TraesCS4B01G358100 chr5A 518027578 518028329 751 True 723 723 84.005 2287 3054 1 chr5A.!!$R1 767
11 TraesCS4B01G358100 chr6D 288463183 288463952 769 False 850 850 86.912 2286 3054 1 chr6D.!!$F2 768
12 TraesCS4B01G358100 chr6D 62248967 62249700 733 True 845 845 87.256 2286 3054 1 chr6D.!!$R1 768
13 TraesCS4B01G358100 chr6D 454014313 454015009 696 False 556 556 81.907 3388 4067 1 chr6D.!!$F3 679
14 TraesCS4B01G358100 chr6D 7244925 7245632 707 False 431 431 78.779 3388 4064 1 chr6D.!!$F1 676
15 TraesCS4B01G358100 chr4A 127169150 127169899 749 True 835 835 86.701 2289 3054 1 chr4A.!!$R1 765
16 TraesCS4B01G358100 chr4A 710850452 710851123 671 False 320 320 76.505 3403 4037 1 chr4A.!!$F1 634
17 TraesCS4B01G358100 chr5B 470515714 470516408 694 False 582 582 82.521 3398 4064 1 chr5B.!!$F1 666
18 TraesCS4B01G358100 chr6B 690026189 690026836 647 False 564 564 83.155 3409 4030 1 chr6B.!!$F1 621
19 TraesCS4B01G358100 chr2B 202289280 202290031 751 False 466 466 78.824 3412 4135 1 chr2B.!!$F1 723
20 TraesCS4B01G358100 chr1A 572220133 572220779 646 False 420 420 79.452 3453 4070 1 chr1A.!!$F1 617
21 TraesCS4B01G358100 chr2D 589507587 589508097 510 True 398 398 81.310 3561 4062 1 chr2D.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.034059 AACGCTGGAGTTGTCCTCAG 59.966 55.0 0.0 0.0 44.30 3.35 F
426 434 0.035439 CACGGTGGCATTCCCTTAGT 60.035 55.0 0.0 0.0 0.00 2.24 F
2063 2488 0.042731 TACAACCTGGGAGGAGGAGG 59.957 60.0 0.0 0.0 37.67 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1682 0.031721 GACACTCGGACGTGAAGGTT 59.968 55.0 0.00 0.00 38.27 3.50 R
2161 2607 0.233848 CCGAAGCCAAACGTGTGTAC 59.766 55.0 4.73 0.00 0.00 2.90 R
3161 3634 0.179187 CGAAGACTGAGTCGCGACAT 60.179 55.0 37.85 23.95 37.39 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.438800 TAGACGGCTCTCCTAAAGCT 57.561 50.000 0.00 0.00 39.75 3.74
21 22 2.438800 AGACGGCTCTCCTAAAGCTA 57.561 50.000 0.00 0.00 39.75 3.32
22 23 2.952116 AGACGGCTCTCCTAAAGCTAT 58.048 47.619 0.00 0.00 39.75 2.97
23 24 2.888414 AGACGGCTCTCCTAAAGCTATC 59.112 50.000 0.00 0.00 39.75 2.08
24 25 2.888414 GACGGCTCTCCTAAAGCTATCT 59.112 50.000 0.00 0.00 39.75 1.98
25 26 2.625790 ACGGCTCTCCTAAAGCTATCTG 59.374 50.000 0.00 0.00 39.75 2.90
26 27 2.625790 CGGCTCTCCTAAAGCTATCTGT 59.374 50.000 0.00 0.00 39.75 3.41
27 28 3.551863 CGGCTCTCCTAAAGCTATCTGTG 60.552 52.174 0.00 0.00 39.75 3.66
28 29 3.244044 GGCTCTCCTAAAGCTATCTGTGG 60.244 52.174 0.00 0.00 39.75 4.17
29 30 3.639094 GCTCTCCTAAAGCTATCTGTGGA 59.361 47.826 0.00 0.00 36.80 4.02
30 31 4.500716 GCTCTCCTAAAGCTATCTGTGGAC 60.501 50.000 0.00 0.00 36.80 4.02
31 32 4.873010 TCTCCTAAAGCTATCTGTGGACT 58.127 43.478 0.00 0.00 0.00 3.85
32 33 5.273208 TCTCCTAAAGCTATCTGTGGACTT 58.727 41.667 0.00 0.00 0.00 3.01
33 34 5.127845 TCTCCTAAAGCTATCTGTGGACTTG 59.872 44.000 0.00 0.00 0.00 3.16
34 35 4.777896 TCCTAAAGCTATCTGTGGACTTGT 59.222 41.667 0.00 0.00 0.00 3.16
35 36 5.105310 TCCTAAAGCTATCTGTGGACTTGTC 60.105 44.000 0.00 0.00 0.00 3.18
36 37 4.899352 AAAGCTATCTGTGGACTTGTCT 57.101 40.909 0.61 0.00 0.00 3.41
37 38 3.883830 AGCTATCTGTGGACTTGTCTG 57.116 47.619 0.61 0.00 0.00 3.51
38 39 3.169099 AGCTATCTGTGGACTTGTCTGT 58.831 45.455 0.61 0.00 0.00 3.41
39 40 3.056250 AGCTATCTGTGGACTTGTCTGTG 60.056 47.826 0.61 0.00 0.00 3.66
40 41 2.847327 ATCTGTGGACTTGTCTGTGG 57.153 50.000 0.61 0.00 0.00 4.17
41 42 1.788229 TCTGTGGACTTGTCTGTGGA 58.212 50.000 0.61 0.00 0.00 4.02
42 43 1.412710 TCTGTGGACTTGTCTGTGGAC 59.587 52.381 0.61 0.00 42.42 4.02
51 52 2.727123 TGTCTGTGGACATTTGGTGT 57.273 45.000 0.00 0.00 46.19 4.16
52 53 2.296792 TGTCTGTGGACATTTGGTGTG 58.703 47.619 0.00 0.00 46.19 3.82
53 54 2.297701 GTCTGTGGACATTTGGTGTGT 58.702 47.619 0.00 0.00 42.36 3.72
54 55 2.290641 GTCTGTGGACATTTGGTGTGTC 59.709 50.000 0.00 0.00 42.36 3.67
60 61 3.915437 GACATTTGGTGTGTCCGATTT 57.085 42.857 0.00 0.00 42.36 2.17
62 63 5.365403 GACATTTGGTGTGTCCGATTTAA 57.635 39.130 0.00 0.00 42.36 1.52
63 64 5.371115 ACATTTGGTGTGTCCGATTTAAG 57.629 39.130 0.00 0.00 40.28 1.85
64 65 4.217550 ACATTTGGTGTGTCCGATTTAAGG 59.782 41.667 0.00 0.00 40.28 2.69
65 66 3.495434 TTGGTGTGTCCGATTTAAGGT 57.505 42.857 0.00 0.00 39.52 3.50
66 67 4.620589 TTGGTGTGTCCGATTTAAGGTA 57.379 40.909 0.00 0.00 39.52 3.08
67 68 3.929094 TGGTGTGTCCGATTTAAGGTAC 58.071 45.455 0.00 0.00 39.52 3.34
68 69 3.324268 TGGTGTGTCCGATTTAAGGTACA 59.676 43.478 0.00 0.00 39.52 2.90
69 70 4.202336 TGGTGTGTCCGATTTAAGGTACAA 60.202 41.667 0.00 0.00 39.52 2.41
70 71 4.152938 GGTGTGTCCGATTTAAGGTACAAC 59.847 45.833 0.00 0.00 32.29 3.32
71 72 3.989167 TGTGTCCGATTTAAGGTACAACG 59.011 43.478 0.00 0.00 0.00 4.10
72 73 2.995258 TGTCCGATTTAAGGTACAACGC 59.005 45.455 0.00 0.00 0.00 4.84
73 74 3.256558 GTCCGATTTAAGGTACAACGCT 58.743 45.455 0.00 0.00 0.00 5.07
74 75 3.061697 GTCCGATTTAAGGTACAACGCTG 59.938 47.826 0.00 0.00 0.00 5.18
75 76 2.350498 CCGATTTAAGGTACAACGCTGG 59.650 50.000 0.00 0.00 0.00 4.85
76 77 3.255725 CGATTTAAGGTACAACGCTGGA 58.744 45.455 0.00 0.00 0.00 3.86
77 78 3.306166 CGATTTAAGGTACAACGCTGGAG 59.694 47.826 0.00 0.00 0.00 3.86
78 79 3.756933 TTTAAGGTACAACGCTGGAGT 57.243 42.857 0.00 0.00 0.00 3.85
79 80 3.756933 TTAAGGTACAACGCTGGAGTT 57.243 42.857 0.00 0.00 34.15 3.01
84 85 4.779475 CAACGCTGGAGTTGTCCT 57.221 55.556 8.62 0.00 44.58 3.85
85 86 2.533318 CAACGCTGGAGTTGTCCTC 58.467 57.895 8.62 0.00 44.58 3.71
86 87 0.249868 CAACGCTGGAGTTGTCCTCA 60.250 55.000 8.62 0.00 44.58 3.86
87 88 0.034059 AACGCTGGAGTTGTCCTCAG 59.966 55.000 0.00 0.00 44.30 3.35
88 89 0.827925 ACGCTGGAGTTGTCCTCAGA 60.828 55.000 0.00 0.00 44.30 3.27
89 90 0.318441 CGCTGGAGTTGTCCTCAGAA 59.682 55.000 0.00 0.00 44.30 3.02
90 91 1.270305 CGCTGGAGTTGTCCTCAGAAA 60.270 52.381 0.00 0.00 44.30 2.52
91 92 2.421619 GCTGGAGTTGTCCTCAGAAAG 58.578 52.381 0.00 0.00 44.30 2.62
103 104 3.760580 CTCAGAAAGGACAGTGGTTCT 57.239 47.619 0.00 0.00 32.83 3.01
104 105 4.078639 CTCAGAAAGGACAGTGGTTCTT 57.921 45.455 0.00 0.00 45.01 2.52
105 106 4.061596 CTCAGAAAGGACAGTGGTTCTTC 58.938 47.826 0.00 0.00 42.18 2.87
106 107 3.142174 CAGAAAGGACAGTGGTTCTTCC 58.858 50.000 0.00 0.00 42.18 3.46
107 108 2.777692 AGAAAGGACAGTGGTTCTTCCA 59.222 45.455 0.00 0.00 42.18 3.53
120 121 5.825532 TGGTTCTTCCATTCATTCCATACA 58.174 37.500 0.00 0.00 41.93 2.29
121 122 6.252233 TGGTTCTTCCATTCATTCCATACAA 58.748 36.000 0.00 0.00 41.93 2.41
122 123 6.377996 TGGTTCTTCCATTCATTCCATACAAG 59.622 38.462 0.00 0.00 41.93 3.16
123 124 6.603201 GGTTCTTCCATTCATTCCATACAAGA 59.397 38.462 0.00 0.00 35.97 3.02
124 125 7.122650 GGTTCTTCCATTCATTCCATACAAGAA 59.877 37.037 0.00 0.00 35.97 2.52
125 126 7.870509 TCTTCCATTCATTCCATACAAGAAG 57.129 36.000 0.00 0.00 0.00 2.85
126 127 7.632861 TCTTCCATTCATTCCATACAAGAAGA 58.367 34.615 0.00 0.00 35.05 2.87
127 128 8.108999 TCTTCCATTCATTCCATACAAGAAGAA 58.891 33.333 0.00 0.00 34.63 2.52
128 129 7.870509 TCCATTCATTCCATACAAGAAGAAG 57.129 36.000 0.00 0.00 0.00 2.85
129 130 7.632861 TCCATTCATTCCATACAAGAAGAAGA 58.367 34.615 0.00 0.00 0.00 2.87
130 131 7.772292 TCCATTCATTCCATACAAGAAGAAGAG 59.228 37.037 0.00 0.00 0.00 2.85
131 132 7.772292 CCATTCATTCCATACAAGAAGAAGAGA 59.228 37.037 0.00 0.00 0.00 3.10
132 133 9.170734 CATTCATTCCATACAAGAAGAAGAGAA 57.829 33.333 0.00 0.00 0.00 2.87
133 134 9.917887 ATTCATTCCATACAAGAAGAAGAGAAT 57.082 29.630 0.00 0.00 0.00 2.40
134 135 9.745018 TTCATTCCATACAAGAAGAAGAGAATT 57.255 29.630 0.00 0.00 0.00 2.17
135 136 9.170734 TCATTCCATACAAGAAGAAGAGAATTG 57.829 33.333 0.00 0.00 0.00 2.32
136 137 6.992063 TCCATACAAGAAGAAGAGAATTGC 57.008 37.500 0.00 0.00 0.00 3.56
137 138 5.882557 TCCATACAAGAAGAAGAGAATTGCC 59.117 40.000 0.00 0.00 0.00 4.52
138 139 5.067023 CCATACAAGAAGAAGAGAATTGCCC 59.933 44.000 0.00 0.00 0.00 5.36
139 140 4.104383 ACAAGAAGAAGAGAATTGCCCA 57.896 40.909 0.00 0.00 0.00 5.36
140 141 4.077822 ACAAGAAGAAGAGAATTGCCCAG 58.922 43.478 0.00 0.00 0.00 4.45
141 142 2.720915 AGAAGAAGAGAATTGCCCAGC 58.279 47.619 0.00 0.00 0.00 4.85
142 143 2.308275 AGAAGAAGAGAATTGCCCAGCT 59.692 45.455 0.00 0.00 0.00 4.24
143 144 2.416680 AGAAGAGAATTGCCCAGCTC 57.583 50.000 0.00 0.00 0.00 4.09
144 145 1.632409 AGAAGAGAATTGCCCAGCTCA 59.368 47.619 0.00 0.00 0.00 4.26
145 146 2.241685 AGAAGAGAATTGCCCAGCTCAT 59.758 45.455 0.00 0.00 0.00 2.90
146 147 2.345124 AGAGAATTGCCCAGCTCATC 57.655 50.000 0.00 0.00 0.00 2.92
147 148 1.562942 AGAGAATTGCCCAGCTCATCA 59.437 47.619 0.00 0.00 0.00 3.07
148 149 2.025605 AGAGAATTGCCCAGCTCATCAA 60.026 45.455 0.00 0.00 0.00 2.57
149 150 2.358267 GAGAATTGCCCAGCTCATCAAG 59.642 50.000 0.00 0.00 0.00 3.02
150 151 1.407979 GAATTGCCCAGCTCATCAAGG 59.592 52.381 0.00 0.00 0.00 3.61
151 152 0.627451 ATTGCCCAGCTCATCAAGGA 59.373 50.000 0.00 0.00 0.00 3.36
152 153 0.405198 TTGCCCAGCTCATCAAGGAA 59.595 50.000 0.00 0.00 0.00 3.36
153 154 0.405198 TGCCCAGCTCATCAAGGAAA 59.595 50.000 0.00 0.00 0.00 3.13
154 155 1.203038 TGCCCAGCTCATCAAGGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
155 156 2.105766 GCCCAGCTCATCAAGGAAAAT 58.894 47.619 0.00 0.00 0.00 1.82
156 157 2.100418 GCCCAGCTCATCAAGGAAAATC 59.900 50.000 0.00 0.00 0.00 2.17
157 158 3.359033 CCCAGCTCATCAAGGAAAATCA 58.641 45.455 0.00 0.00 0.00 2.57
158 159 3.129988 CCCAGCTCATCAAGGAAAATCAC 59.870 47.826 0.00 0.00 0.00 3.06
159 160 3.181503 CCAGCTCATCAAGGAAAATCACG 60.182 47.826 0.00 0.00 0.00 4.35
160 161 2.421424 AGCTCATCAAGGAAAATCACGC 59.579 45.455 0.00 0.00 0.00 5.34
161 162 2.789092 GCTCATCAAGGAAAATCACGCG 60.789 50.000 3.53 3.53 0.00 6.01
162 163 2.672874 CTCATCAAGGAAAATCACGCGA 59.327 45.455 15.93 0.00 0.00 5.87
163 164 3.070748 TCATCAAGGAAAATCACGCGAA 58.929 40.909 15.93 0.00 0.00 4.70
164 165 3.500299 TCATCAAGGAAAATCACGCGAAA 59.500 39.130 15.93 0.00 0.00 3.46
165 166 3.972950 TCAAGGAAAATCACGCGAAAA 57.027 38.095 15.93 0.00 0.00 2.29
166 167 4.497473 TCAAGGAAAATCACGCGAAAAT 57.503 36.364 15.93 0.00 0.00 1.82
167 168 4.865776 TCAAGGAAAATCACGCGAAAATT 58.134 34.783 15.93 6.32 0.00 1.82
168 169 6.003234 TCAAGGAAAATCACGCGAAAATTA 57.997 33.333 15.93 0.00 0.00 1.40
169 170 6.439599 TCAAGGAAAATCACGCGAAAATTAA 58.560 32.000 15.93 0.00 0.00 1.40
170 171 6.918569 TCAAGGAAAATCACGCGAAAATTAAA 59.081 30.769 15.93 0.00 0.00 1.52
171 172 7.596995 TCAAGGAAAATCACGCGAAAATTAAAT 59.403 29.630 15.93 0.00 0.00 1.40
172 173 7.506296 AGGAAAATCACGCGAAAATTAAATC 57.494 32.000 15.93 8.45 0.00 2.17
173 174 7.087639 AGGAAAATCACGCGAAAATTAAATCA 58.912 30.769 15.93 0.00 0.00 2.57
174 175 7.061789 AGGAAAATCACGCGAAAATTAAATCAC 59.938 33.333 15.93 4.26 0.00 3.06
175 176 7.148885 GGAAAATCACGCGAAAATTAAATCACA 60.149 33.333 15.93 0.00 0.00 3.58
176 177 7.630470 AAATCACGCGAAAATTAAATCACAA 57.370 28.000 15.93 0.00 0.00 3.33
177 178 7.630470 AATCACGCGAAAATTAAATCACAAA 57.370 28.000 15.93 0.00 0.00 2.83
178 179 7.810766 ATCACGCGAAAATTAAATCACAAAT 57.189 28.000 15.93 0.00 0.00 2.32
179 180 8.903570 ATCACGCGAAAATTAAATCACAAATA 57.096 26.923 15.93 0.00 0.00 1.40
180 181 8.375717 TCACGCGAAAATTAAATCACAAATAG 57.624 30.769 15.93 0.00 0.00 1.73
181 182 7.007905 TCACGCGAAAATTAAATCACAAATAGC 59.992 33.333 15.93 0.00 0.00 2.97
182 183 6.021782 ACGCGAAAATTAAATCACAAATAGCG 60.022 34.615 15.93 0.00 44.77 4.26
183 184 6.193776 CGCGAAAATTAAATCACAAATAGCGA 59.806 34.615 0.00 0.00 42.39 4.93
184 185 7.253158 CGCGAAAATTAAATCACAAATAGCGAA 60.253 33.333 0.00 0.00 42.39 4.70
185 186 8.369588 GCGAAAATTAAATCACAAATAGCGAAA 58.630 29.630 0.00 0.00 0.00 3.46
188 189 9.971744 AAAATTAAATCACAAATAGCGAAATGC 57.028 25.926 0.00 0.00 46.98 3.56
221 222 6.502074 AAAAACTAGAGCTTAGGGATAGGG 57.498 41.667 0.00 0.00 0.00 3.53
222 223 4.836255 AACTAGAGCTTAGGGATAGGGT 57.164 45.455 0.00 0.00 0.00 4.34
223 224 4.836255 ACTAGAGCTTAGGGATAGGGTT 57.164 45.455 0.00 0.00 0.00 4.11
224 225 5.159139 ACTAGAGCTTAGGGATAGGGTTT 57.841 43.478 0.00 0.00 0.00 3.27
225 226 6.290870 ACTAGAGCTTAGGGATAGGGTTTA 57.709 41.667 0.00 0.00 0.00 2.01
226 227 6.316513 ACTAGAGCTTAGGGATAGGGTTTAG 58.683 44.000 0.00 0.00 0.00 1.85
227 228 5.420215 AGAGCTTAGGGATAGGGTTTAGA 57.580 43.478 0.00 0.00 0.00 2.10
228 229 5.983608 AGAGCTTAGGGATAGGGTTTAGAT 58.016 41.667 0.00 0.00 0.00 1.98
229 230 5.782845 AGAGCTTAGGGATAGGGTTTAGATG 59.217 44.000 0.00 0.00 0.00 2.90
230 231 5.727630 AGCTTAGGGATAGGGTTTAGATGA 58.272 41.667 0.00 0.00 0.00 2.92
231 232 6.151049 AGCTTAGGGATAGGGTTTAGATGAA 58.849 40.000 0.00 0.00 0.00 2.57
232 233 6.043358 AGCTTAGGGATAGGGTTTAGATGAAC 59.957 42.308 0.00 0.00 0.00 3.18
233 234 4.957684 AGGGATAGGGTTTAGATGAACG 57.042 45.455 0.00 0.00 0.00 3.95
234 235 3.071167 AGGGATAGGGTTTAGATGAACGC 59.929 47.826 0.00 0.00 41.28 4.84
235 236 3.181458 GGGATAGGGTTTAGATGAACGCA 60.181 47.826 7.19 0.00 42.82 5.24
236 237 3.808174 GGATAGGGTTTAGATGAACGCAC 59.192 47.826 7.19 0.00 42.82 5.34
237 238 2.851263 AGGGTTTAGATGAACGCACA 57.149 45.000 7.19 0.00 42.82 4.57
238 239 3.350219 AGGGTTTAGATGAACGCACAT 57.650 42.857 7.19 0.00 42.82 3.21
239 240 3.270877 AGGGTTTAGATGAACGCACATC 58.729 45.455 12.52 12.52 42.82 3.06
240 241 2.354821 GGGTTTAGATGAACGCACATCC 59.645 50.000 15.53 4.44 45.20 3.51
241 242 3.006940 GGTTTAGATGAACGCACATCCA 58.993 45.455 15.53 3.39 45.20 3.41
242 243 3.627577 GGTTTAGATGAACGCACATCCAT 59.372 43.478 15.53 4.78 45.20 3.41
243 244 4.496341 GGTTTAGATGAACGCACATCCATG 60.496 45.833 15.53 0.00 45.20 3.66
244 245 2.408271 AGATGAACGCACATCCATGT 57.592 45.000 15.53 0.00 45.20 3.21
245 246 2.283298 AGATGAACGCACATCCATGTC 58.717 47.619 15.53 0.00 45.20 3.06
246 247 2.093288 AGATGAACGCACATCCATGTCT 60.093 45.455 15.53 0.00 45.20 3.41
247 248 1.441738 TGAACGCACATCCATGTCTG 58.558 50.000 0.00 0.00 39.39 3.51
248 249 1.001860 TGAACGCACATCCATGTCTGA 59.998 47.619 0.00 0.00 39.39 3.27
249 250 1.394917 GAACGCACATCCATGTCTGAC 59.605 52.381 0.00 0.00 39.39 3.51
250 251 0.737367 ACGCACATCCATGTCTGACG 60.737 55.000 2.98 1.89 39.39 4.35
251 252 1.717937 GCACATCCATGTCTGACGC 59.282 57.895 2.98 0.00 39.39 5.19
252 253 0.742281 GCACATCCATGTCTGACGCT 60.742 55.000 2.98 0.00 39.39 5.07
253 254 1.284657 CACATCCATGTCTGACGCTC 58.715 55.000 2.98 0.00 39.39 5.03
254 255 0.897621 ACATCCATGTCTGACGCTCA 59.102 50.000 2.98 0.00 35.87 4.26
255 256 1.276138 ACATCCATGTCTGACGCTCAA 59.724 47.619 2.98 0.00 35.87 3.02
256 257 2.289631 ACATCCATGTCTGACGCTCAAA 60.290 45.455 2.98 0.00 35.87 2.69
257 258 2.768253 TCCATGTCTGACGCTCAAAT 57.232 45.000 2.98 0.00 0.00 2.32
258 259 2.349590 TCCATGTCTGACGCTCAAATG 58.650 47.619 2.98 0.37 0.00 2.32
259 260 1.399440 CCATGTCTGACGCTCAAATGG 59.601 52.381 7.83 7.83 30.57 3.16
260 261 2.079158 CATGTCTGACGCTCAAATGGT 58.921 47.619 2.98 0.00 0.00 3.55
261 262 3.261580 CATGTCTGACGCTCAAATGGTA 58.738 45.455 2.98 0.00 0.00 3.25
262 263 3.394674 TGTCTGACGCTCAAATGGTAA 57.605 42.857 2.98 0.00 0.00 2.85
263 264 3.325870 TGTCTGACGCTCAAATGGTAAG 58.674 45.455 2.98 0.00 0.00 2.34
264 265 3.244078 TGTCTGACGCTCAAATGGTAAGT 60.244 43.478 2.98 0.00 0.00 2.24
265 266 3.368236 GTCTGACGCTCAAATGGTAAGTC 59.632 47.826 0.00 0.00 0.00 3.01
266 267 3.006430 TCTGACGCTCAAATGGTAAGTCA 59.994 43.478 0.00 0.00 36.04 3.41
267 268 3.734463 TGACGCTCAAATGGTAAGTCAA 58.266 40.909 0.00 0.00 34.71 3.18
268 269 4.323417 TGACGCTCAAATGGTAAGTCAAT 58.677 39.130 0.00 0.00 34.71 2.57
269 270 4.391830 TGACGCTCAAATGGTAAGTCAATC 59.608 41.667 0.00 0.00 34.71 2.67
270 271 3.689649 ACGCTCAAATGGTAAGTCAATCC 59.310 43.478 0.00 0.00 0.00 3.01
271 272 3.689161 CGCTCAAATGGTAAGTCAATCCA 59.311 43.478 0.00 0.00 35.64 3.41
272 273 4.155826 CGCTCAAATGGTAAGTCAATCCAA 59.844 41.667 0.00 0.00 34.80 3.53
273 274 5.402398 GCTCAAATGGTAAGTCAATCCAAC 58.598 41.667 0.00 0.00 34.80 3.77
274 275 5.621197 TCAAATGGTAAGTCAATCCAACG 57.379 39.130 0.00 0.00 34.80 4.10
275 276 4.457603 TCAAATGGTAAGTCAATCCAACGG 59.542 41.667 0.00 0.00 34.80 4.44
276 277 1.816074 TGGTAAGTCAATCCAACGGC 58.184 50.000 0.00 0.00 0.00 5.68
277 278 1.349688 TGGTAAGTCAATCCAACGGCT 59.650 47.619 0.00 0.00 0.00 5.52
278 279 2.007608 GGTAAGTCAATCCAACGGCTC 58.992 52.381 0.00 0.00 0.00 4.70
279 280 2.614481 GGTAAGTCAATCCAACGGCTCA 60.614 50.000 0.00 0.00 0.00 4.26
280 281 1.523758 AAGTCAATCCAACGGCTCAC 58.476 50.000 0.00 0.00 0.00 3.51
315 316 1.080772 CGTGCCTTCGTGAGCTACA 60.081 57.895 0.00 0.00 0.00 2.74
320 321 1.681793 GCCTTCGTGAGCTACATAGGA 59.318 52.381 5.76 0.00 30.99 2.94
343 351 8.683615 AGGAAAACAGAGGTTAAAGTTGTTAAG 58.316 33.333 0.00 0.00 35.82 1.85
379 387 2.264005 ATGCGGTGGTTAACTGACAA 57.736 45.000 5.42 0.00 37.33 3.18
426 434 0.035439 CACGGTGGCATTCCCTTAGT 60.035 55.000 0.00 0.00 0.00 2.24
429 437 2.508300 ACGGTGGCATTCCCTTAGTAAT 59.492 45.455 0.00 0.00 0.00 1.89
497 505 7.513969 CGCAAAATATGACAAACATGCACTATG 60.514 37.037 0.00 0.00 42.68 2.23
546 889 5.006552 CAGGCAACAAAATGTGTACCTTTTG 59.993 40.000 17.92 17.92 41.85 2.44
549 892 6.926272 GGCAACAAAATGTGTACCTTTTGATA 59.074 34.615 23.13 0.00 41.10 2.15
550 893 7.602265 GGCAACAAAATGTGTACCTTTTGATAT 59.398 33.333 23.13 11.70 41.10 1.63
551 894 8.987890 GCAACAAAATGTGTACCTTTTGATATT 58.012 29.630 23.13 10.87 41.10 1.28
616 959 3.706802 TTGCAAACGCAAATGAGAGAA 57.293 38.095 0.00 0.00 46.17 2.87
650 996 1.808546 CAAGCCCATATGTGCGCAA 59.191 52.632 14.00 2.60 31.51 4.85
653 999 1.527034 AGCCCATATGTGCGCAATAG 58.473 50.000 14.00 0.00 31.51 1.73
682 1029 3.290710 TGAGAGCCCAAATCATAAAGGC 58.709 45.455 0.00 0.00 44.20 4.35
683 1030 3.290710 GAGAGCCCAAATCATAAAGGCA 58.709 45.455 1.74 0.00 46.35 4.75
727 1074 5.124936 GCCCAAAATTAGTCTTAACACCGAT 59.875 40.000 0.00 0.00 0.00 4.18
730 1077 7.241376 CCAAAATTAGTCTTAACACCGATGTC 58.759 38.462 0.00 0.00 38.45 3.06
777 1147 2.896685 TGCCAACAAAAGGTAATCCCAG 59.103 45.455 0.00 0.00 34.66 4.45
822 1192 2.406130 TCCAATCAAACACCGACGTAC 58.594 47.619 0.00 0.00 0.00 3.67
823 1193 2.036217 TCCAATCAAACACCGACGTACT 59.964 45.455 0.00 0.00 0.00 2.73
867 1237 2.048877 CTACGGCCGGTTTCACGT 60.049 61.111 31.76 8.14 42.71 4.49
880 1250 3.432933 GGTTTCACGTGAACGCCTATAAA 59.567 43.478 29.74 9.87 44.43 1.40
953 1326 4.288670 TCACGAAACCGATCTCATCTAC 57.711 45.455 0.00 0.00 0.00 2.59
955 1328 2.033049 ACGAAACCGATCTCATCTACCG 59.967 50.000 0.00 0.00 0.00 4.02
956 1329 2.395654 GAAACCGATCTCATCTACCGC 58.604 52.381 0.00 0.00 0.00 5.68
957 1330 0.311165 AACCGATCTCATCTACCGCG 59.689 55.000 0.00 0.00 0.00 6.46
958 1331 0.534427 ACCGATCTCATCTACCGCGA 60.534 55.000 8.23 0.00 0.00 5.87
959 1332 0.805614 CCGATCTCATCTACCGCGAT 59.194 55.000 8.23 0.00 0.00 4.58
960 1333 1.202087 CCGATCTCATCTACCGCGATC 60.202 57.143 8.23 0.00 0.00 3.69
961 1334 1.527995 CGATCTCATCTACCGCGATCG 60.528 57.143 11.69 11.69 44.65 3.69
962 1335 1.465387 GATCTCATCTACCGCGATCGT 59.535 52.381 17.81 0.00 0.00 3.73
1176 1564 1.219393 CTTCCAGCCGTCTCCCTTC 59.781 63.158 0.00 0.00 0.00 3.46
1239 1627 3.184683 GCTGCTGCTTCGAGGTCG 61.185 66.667 8.53 0.00 37.14 4.79
1268 1668 2.412937 GTGCAAGTGCGCCTTTGT 59.587 55.556 18.42 0.00 45.15 2.83
1281 1682 0.834612 CCTTTGTATACGGCTCCCCA 59.165 55.000 0.00 0.00 0.00 4.96
1325 1726 3.567797 GTTCCATCTCGCCTGCGC 61.568 66.667 6.67 0.00 39.59 6.09
1467 1868 1.812686 CGTCTCCCTTCGTGGACCAA 61.813 60.000 0.00 0.00 38.35 3.67
1650 2075 3.108521 CGACAGCTTCGTAGTGCTT 57.891 52.632 9.30 0.00 43.24 3.91
1659 2084 1.372997 CGTAGTGCTTGTCCACGCT 60.373 57.895 0.00 0.00 40.59 5.07
1788 2213 0.322816 TGCTGAAGAAGGCCATGGAC 60.323 55.000 18.40 14.73 0.00 4.02
1806 2231 0.952497 ACTTCGTCGTCGACCAGCTA 60.952 55.000 19.29 0.35 46.03 3.32
1833 2258 2.202324 GACCGTCTCAGCGTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
1930 2355 1.020861 CGTGCAGTTGCTCATGGCTA 61.021 55.000 5.62 0.00 42.66 3.93
2022 2447 2.583593 GTCGCCAGCGTCATCCTC 60.584 66.667 12.32 0.00 40.74 3.71
2063 2488 0.042731 TACAACCTGGGAGGAGGAGG 59.957 60.000 0.00 0.00 37.67 4.30
2064 2489 1.081092 CAACCTGGGAGGAGGAGGA 59.919 63.158 0.00 0.00 37.67 3.71
2065 2490 0.980231 CAACCTGGGAGGAGGAGGAG 60.980 65.000 0.00 0.00 37.67 3.69
2066 2491 2.188215 AACCTGGGAGGAGGAGGAGG 62.188 65.000 0.00 0.00 37.67 4.30
2067 2492 2.328589 CCTGGGAGGAGGAGGAGGA 61.329 68.421 0.00 0.00 37.67 3.71
2068 2493 1.232792 CTGGGAGGAGGAGGAGGAG 59.767 68.421 0.00 0.00 0.00 3.69
2311 2757 3.519930 GGCTCCTCTCCGTCGTCC 61.520 72.222 0.00 0.00 0.00 4.79
2545 2992 4.712425 GCACCTACCGCGACACGT 62.712 66.667 8.23 0.00 41.42 4.49
2595 3042 4.357947 GACGTGGCGGTGCAGAGA 62.358 66.667 0.00 0.00 0.00 3.10
3145 3618 0.372334 CGGCGTCAACTAAAATCGGG 59.628 55.000 0.00 0.00 0.00 5.14
3147 3620 0.098200 GCGTCAACTAAAATCGGGGC 59.902 55.000 0.00 0.00 0.00 5.80
3161 3634 4.055227 GGGCCCGGTGGATCCAAA 62.055 66.667 18.20 0.00 35.57 3.28
3163 3636 2.127232 GGCCCGGTGGATCCAAATG 61.127 63.158 18.20 9.10 35.57 2.32
3168 3641 1.721487 GGTGGATCCAAATGTCGCG 59.279 57.895 18.20 0.00 35.97 5.87
3181 3657 1.207085 GTCGCGACTCAGTCTTCGT 59.793 57.895 31.12 0.00 37.56 3.85
3213 3695 9.548208 GATTCAGTTATCTTGCACTTTTACTTC 57.452 33.333 0.00 0.00 0.00 3.01
3237 3719 7.751646 TCCGTCTCATATTTTATTTATGGGGT 58.248 34.615 0.00 0.00 30.02 4.95
3238 3720 8.882282 TCCGTCTCATATTTTATTTATGGGGTA 58.118 33.333 0.00 0.00 30.02 3.69
3239 3721 9.162764 CCGTCTCATATTTTATTTATGGGGTAG 57.837 37.037 0.00 0.00 30.02 3.18
3240 3722 9.162764 CGTCTCATATTTTATTTATGGGGTAGG 57.837 37.037 0.00 0.00 30.02 3.18
3357 3859 9.599322 GGATTCGATAATTTCATGTAATGTGTC 57.401 33.333 0.00 0.00 46.80 3.67
3370 3872 6.218025 TGTAATGTGTCACGTTAATGTGTC 57.782 37.500 23.68 19.47 40.74 3.67
3374 3876 1.790043 TGTCACGTTAATGTGTCGCTG 59.210 47.619 23.68 1.57 40.74 5.18
3382 3884 4.084745 CGTTAATGTGTCGCTGTTAAGTGT 60.085 41.667 0.00 0.00 35.32 3.55
3386 3888 3.377439 TGTGTCGCTGTTAAGTGTACTG 58.623 45.455 0.00 0.00 35.32 2.74
3387 3889 3.181484 TGTGTCGCTGTTAAGTGTACTGT 60.181 43.478 0.00 0.00 35.32 3.55
3388 3890 3.800506 GTGTCGCTGTTAAGTGTACTGTT 59.199 43.478 0.00 0.00 35.32 3.16
3389 3891 4.269363 GTGTCGCTGTTAAGTGTACTGTTT 59.731 41.667 0.00 0.00 35.32 2.83
3390 3892 4.269123 TGTCGCTGTTAAGTGTACTGTTTG 59.731 41.667 0.00 0.00 35.32 2.93
3391 3893 3.246699 TCGCTGTTAAGTGTACTGTTTGC 59.753 43.478 0.00 0.00 35.32 3.68
3392 3894 3.247648 CGCTGTTAAGTGTACTGTTTGCT 59.752 43.478 0.00 0.00 0.00 3.91
3393 3895 4.527564 GCTGTTAAGTGTACTGTTTGCTG 58.472 43.478 0.00 0.00 0.00 4.41
3394 3896 4.554723 GCTGTTAAGTGTACTGTTTGCTGG 60.555 45.833 0.00 0.00 0.00 4.85
3395 3897 4.771903 TGTTAAGTGTACTGTTTGCTGGA 58.228 39.130 0.00 0.00 0.00 3.86
3396 3898 5.373222 TGTTAAGTGTACTGTTTGCTGGAT 58.627 37.500 0.00 0.00 0.00 3.41
3410 3914 8.579850 TGTTTGCTGGATAATACTTTCTCAAT 57.420 30.769 0.00 0.00 0.00 2.57
3540 4045 5.163513 ACGATTTTCCAAATCAATCAGCAC 58.836 37.500 9.34 0.00 0.00 4.40
3554 4059 1.479323 TCAGCACCAACCGGTCTATAC 59.521 52.381 8.04 0.00 44.71 1.47
3564 4069 5.983720 CCAACCGGTCTATACAAACATCTAG 59.016 44.000 8.04 0.00 0.00 2.43
3567 4097 7.598759 ACCGGTCTATACAAACATCTAGAAT 57.401 36.000 0.00 0.00 0.00 2.40
3610 4140 9.309224 TGTGATAGTGTAGCACCAATATAGTAT 57.691 33.333 0.20 0.00 44.02 2.12
3624 4154 7.097192 CCAATATAGTATTACATGCGACCACT 58.903 38.462 0.00 0.00 0.00 4.00
3625 4155 7.275779 CCAATATAGTATTACATGCGACCACTC 59.724 40.741 0.00 0.00 0.00 3.51
3634 4165 3.818210 ACATGCGACCACTCACATAAAAA 59.182 39.130 0.00 0.00 0.00 1.94
3683 4214 2.936498 CGGATAACACAGAATCACACCC 59.064 50.000 0.00 0.00 0.00 4.61
3690 4226 1.420138 ACAGAATCACACCCCGAAAGT 59.580 47.619 0.00 0.00 0.00 2.66
3773 4312 6.280643 GCCAAACTAAATATTTCATGGGTCC 58.719 40.000 3.39 0.00 0.00 4.46
3791 4330 7.146715 TGGGTCCAAATATAACGGGTATTAA 57.853 36.000 0.00 0.00 0.00 1.40
3834 4374 9.898152 ATTTCTTTAAATTTGACCCAAGTTCAA 57.102 25.926 0.00 0.00 30.98 2.69
3855 4399 9.722056 GTTCAAAGCAAAAATATCGACATCTAT 57.278 29.630 0.00 0.00 0.00 1.98
4038 4603 0.454196 GAAACACAACACCAACGGCT 59.546 50.000 0.00 0.00 0.00 5.52
4040 4605 1.711060 AACACAACACCAACGGCTCG 61.711 55.000 0.00 0.00 0.00 5.03
4042 4607 2.590575 CAACACCAACGGCTCGGT 60.591 61.111 0.00 0.00 35.27 4.69
4056 4621 3.055719 CGGTGAAGTGCGCCCAAT 61.056 61.111 4.18 0.00 44.59 3.16
4064 4629 0.839946 AGTGCGCCCAATCCTTCTAT 59.160 50.000 4.18 0.00 0.00 1.98
4076 4642 9.000486 GCCCAATCCTTCTATTTAATACACTAC 58.000 37.037 0.00 0.00 0.00 2.73
4085 4651 8.696043 TCTATTTAATACACTACGCTCCCTAA 57.304 34.615 0.00 0.00 0.00 2.69
4090 4656 8.652810 TTAATACACTACGCTCCCTAATTTTC 57.347 34.615 0.00 0.00 0.00 2.29
4104 4670 5.394553 CCCTAATTTTCAAGGCCTCACAATC 60.395 44.000 5.23 0.00 0.00 2.67
4108 4674 5.549742 TTTTCAAGGCCTCACAATCAATT 57.450 34.783 5.23 0.00 0.00 2.32
4109 4675 5.549742 TTTCAAGGCCTCACAATCAATTT 57.450 34.783 5.23 0.00 0.00 1.82
4111 4677 5.902613 TCAAGGCCTCACAATCAATTTAG 57.097 39.130 5.23 0.00 0.00 1.85
4116 4682 3.448660 GCCTCACAATCAATTTAGGCCTT 59.551 43.478 12.58 0.00 42.96 4.35
4117 4683 4.440663 GCCTCACAATCAATTTAGGCCTTC 60.441 45.833 12.58 0.00 42.96 3.46
4123 4689 7.603404 TCACAATCAATTTAGGCCTTCAATTTG 59.397 33.333 12.58 13.11 0.00 2.32
4125 4691 6.625532 ATCAATTTAGGCCTTCAATTTGGT 57.374 33.333 12.58 6.71 0.00 3.67
4135 4701 4.929211 GCCTTCAATTTGGTATTTGGTCAC 59.071 41.667 0.00 0.00 0.00 3.67
4136 4702 5.478407 CCTTCAATTTGGTATTTGGTCACC 58.522 41.667 0.00 0.00 35.24 4.02
4137 4703 5.476091 TTCAATTTGGTATTTGGTCACCC 57.524 39.130 0.00 0.00 33.61 4.61
4138 4704 3.508012 TCAATTTGGTATTTGGTCACCCG 59.492 43.478 0.00 0.00 33.61 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.952116 AGCTTTAGGAGAGCCGTCTAT 58.048 47.619 0.00 0.00 41.03 1.98
8 9 4.892934 AGTCCACAGATAGCTTTAGGAGAG 59.107 45.833 0.00 0.00 0.00 3.20
9 10 4.873010 AGTCCACAGATAGCTTTAGGAGA 58.127 43.478 0.00 0.00 0.00 3.71
10 11 5.105146 ACAAGTCCACAGATAGCTTTAGGAG 60.105 44.000 0.00 0.00 0.00 3.69
11 12 4.777896 ACAAGTCCACAGATAGCTTTAGGA 59.222 41.667 0.00 0.00 0.00 2.94
12 13 5.091261 ACAAGTCCACAGATAGCTTTAGG 57.909 43.478 0.00 0.00 0.00 2.69
13 14 5.809562 CAGACAAGTCCACAGATAGCTTTAG 59.190 44.000 0.00 0.00 0.00 1.85
14 15 5.246203 ACAGACAAGTCCACAGATAGCTTTA 59.754 40.000 0.00 0.00 0.00 1.85
15 16 4.040952 ACAGACAAGTCCACAGATAGCTTT 59.959 41.667 0.00 0.00 0.00 3.51
16 17 3.580458 ACAGACAAGTCCACAGATAGCTT 59.420 43.478 0.00 0.00 0.00 3.74
17 18 3.056250 CACAGACAAGTCCACAGATAGCT 60.056 47.826 0.00 0.00 0.00 3.32
18 19 3.257393 CACAGACAAGTCCACAGATAGC 58.743 50.000 0.00 0.00 0.00 2.97
19 20 3.511540 TCCACAGACAAGTCCACAGATAG 59.488 47.826 0.00 0.00 0.00 2.08
20 21 3.258372 GTCCACAGACAAGTCCACAGATA 59.742 47.826 0.00 0.00 42.99 1.98
21 22 2.037772 GTCCACAGACAAGTCCACAGAT 59.962 50.000 0.00 0.00 42.99 2.90
22 23 1.412710 GTCCACAGACAAGTCCACAGA 59.587 52.381 0.00 0.00 42.99 3.41
23 24 1.871080 GTCCACAGACAAGTCCACAG 58.129 55.000 0.00 0.00 42.99 3.66
33 34 2.290641 GACACACCAAATGTCCACAGAC 59.709 50.000 0.00 0.00 40.64 3.51
34 35 2.571212 GACACACCAAATGTCCACAGA 58.429 47.619 0.00 0.00 40.64 3.41
40 41 3.915437 AAATCGGACACACCAAATGTC 57.085 42.857 0.00 0.00 44.80 3.06
41 42 4.217550 CCTTAAATCGGACACACCAAATGT 59.782 41.667 0.00 0.00 44.81 2.71
42 43 4.217550 ACCTTAAATCGGACACACCAAATG 59.782 41.667 0.00 0.00 38.90 2.32
43 44 4.403734 ACCTTAAATCGGACACACCAAAT 58.596 39.130 0.00 0.00 38.90 2.32
44 45 3.822940 ACCTTAAATCGGACACACCAAA 58.177 40.909 0.00 0.00 38.90 3.28
45 46 3.495434 ACCTTAAATCGGACACACCAA 57.505 42.857 0.00 0.00 38.90 3.67
46 47 3.324268 TGTACCTTAAATCGGACACACCA 59.676 43.478 0.00 0.00 38.90 4.17
47 48 3.929094 TGTACCTTAAATCGGACACACC 58.071 45.455 0.00 0.00 0.00 4.16
48 49 4.143263 CGTTGTACCTTAAATCGGACACAC 60.143 45.833 0.00 0.00 0.00 3.82
49 50 3.989167 CGTTGTACCTTAAATCGGACACA 59.011 43.478 0.00 0.00 0.00 3.72
50 51 3.181527 GCGTTGTACCTTAAATCGGACAC 60.182 47.826 0.00 0.00 0.00 3.67
51 52 2.995258 GCGTTGTACCTTAAATCGGACA 59.005 45.455 0.00 0.00 0.00 4.02
52 53 3.061697 CAGCGTTGTACCTTAAATCGGAC 59.938 47.826 0.00 0.00 0.00 4.79
53 54 3.255725 CAGCGTTGTACCTTAAATCGGA 58.744 45.455 0.00 0.00 0.00 4.55
54 55 2.350498 CCAGCGTTGTACCTTAAATCGG 59.650 50.000 0.00 0.00 0.00 4.18
55 56 3.255725 TCCAGCGTTGTACCTTAAATCG 58.744 45.455 0.00 0.00 0.00 3.34
56 57 4.251268 ACTCCAGCGTTGTACCTTAAATC 58.749 43.478 0.00 0.00 0.00 2.17
57 58 4.281898 ACTCCAGCGTTGTACCTTAAAT 57.718 40.909 0.00 0.00 0.00 1.40
58 59 3.756933 ACTCCAGCGTTGTACCTTAAA 57.243 42.857 0.00 0.00 0.00 1.52
59 60 3.395639 CAACTCCAGCGTTGTACCTTAA 58.604 45.455 0.00 0.00 39.45 1.85
60 61 3.034721 CAACTCCAGCGTTGTACCTTA 57.965 47.619 0.00 0.00 39.45 2.69
61 62 1.878953 CAACTCCAGCGTTGTACCTT 58.121 50.000 0.00 0.00 39.45 3.50
62 63 3.606886 CAACTCCAGCGTTGTACCT 57.393 52.632 0.00 0.00 39.45 3.08
67 68 0.249868 TGAGGACAACTCCAGCGTTG 60.250 55.000 0.00 0.00 46.01 4.10
68 69 0.034059 CTGAGGACAACTCCAGCGTT 59.966 55.000 0.00 0.00 46.01 4.84
69 70 0.827925 TCTGAGGACAACTCCAGCGT 60.828 55.000 0.00 0.00 46.01 5.07
70 71 0.318441 TTCTGAGGACAACTCCAGCG 59.682 55.000 0.00 0.00 46.01 5.18
71 72 2.421619 CTTTCTGAGGACAACTCCAGC 58.578 52.381 0.00 0.00 46.01 4.85
82 83 7.992141 GGAAGAACCACTGTCCTTTCTGAGG 62.992 52.000 0.00 0.00 41.92 3.86
83 84 3.760580 AGAACCACTGTCCTTTCTGAG 57.239 47.619 0.00 0.00 0.00 3.35
84 85 3.181454 GGAAGAACCACTGTCCTTTCTGA 60.181 47.826 0.00 0.00 38.79 3.27
85 86 3.142174 GGAAGAACCACTGTCCTTTCTG 58.858 50.000 0.00 0.00 38.79 3.02
86 87 2.777692 TGGAAGAACCACTGTCCTTTCT 59.222 45.455 0.00 0.00 44.64 2.52
87 88 3.208747 TGGAAGAACCACTGTCCTTTC 57.791 47.619 0.00 0.00 44.64 2.62
98 99 6.603201 TCTTGTATGGAATGAATGGAAGAACC 59.397 38.462 0.00 0.00 39.54 3.62
99 100 7.630242 TCTTGTATGGAATGAATGGAAGAAC 57.370 36.000 0.00 0.00 0.00 3.01
100 101 8.108999 TCTTCTTGTATGGAATGAATGGAAGAA 58.891 33.333 0.00 0.00 34.56 2.52
101 102 7.632861 TCTTCTTGTATGGAATGAATGGAAGA 58.367 34.615 0.00 0.00 34.93 2.87
102 103 7.870509 TCTTCTTGTATGGAATGAATGGAAG 57.129 36.000 0.00 0.00 0.00 3.46
103 104 8.108999 TCTTCTTCTTGTATGGAATGAATGGAA 58.891 33.333 0.00 0.00 0.00 3.53
104 105 7.632861 TCTTCTTCTTGTATGGAATGAATGGA 58.367 34.615 0.00 0.00 0.00 3.41
105 106 7.772292 TCTCTTCTTCTTGTATGGAATGAATGG 59.228 37.037 0.00 0.00 0.00 3.16
106 107 8.728337 TCTCTTCTTCTTGTATGGAATGAATG 57.272 34.615 0.00 0.00 0.00 2.67
107 108 9.917887 ATTCTCTTCTTCTTGTATGGAATGAAT 57.082 29.630 0.00 0.00 0.00 2.57
108 109 9.745018 AATTCTCTTCTTCTTGTATGGAATGAA 57.255 29.630 0.00 0.00 0.00 2.57
109 110 9.170734 CAATTCTCTTCTTCTTGTATGGAATGA 57.829 33.333 0.00 0.00 0.00 2.57
110 111 7.914346 GCAATTCTCTTCTTCTTGTATGGAATG 59.086 37.037 0.00 0.00 0.00 2.67
111 112 7.067981 GGCAATTCTCTTCTTCTTGTATGGAAT 59.932 37.037 0.00 0.00 0.00 3.01
112 113 6.375455 GGCAATTCTCTTCTTCTTGTATGGAA 59.625 38.462 0.00 0.00 0.00 3.53
113 114 5.882557 GGCAATTCTCTTCTTCTTGTATGGA 59.117 40.000 0.00 0.00 0.00 3.41
114 115 5.067023 GGGCAATTCTCTTCTTCTTGTATGG 59.933 44.000 0.00 0.00 0.00 2.74
115 116 5.649395 TGGGCAATTCTCTTCTTCTTGTATG 59.351 40.000 0.00 0.00 0.00 2.39
116 117 5.819991 TGGGCAATTCTCTTCTTCTTGTAT 58.180 37.500 0.00 0.00 0.00 2.29
117 118 5.241403 TGGGCAATTCTCTTCTTCTTGTA 57.759 39.130 0.00 0.00 0.00 2.41
118 119 4.077822 CTGGGCAATTCTCTTCTTCTTGT 58.922 43.478 0.00 0.00 0.00 3.16
119 120 3.119566 GCTGGGCAATTCTCTTCTTCTTG 60.120 47.826 0.00 0.00 0.00 3.02
120 121 3.087781 GCTGGGCAATTCTCTTCTTCTT 58.912 45.455 0.00 0.00 0.00 2.52
121 122 2.308275 AGCTGGGCAATTCTCTTCTTCT 59.692 45.455 0.00 0.00 0.00 2.85
122 123 2.682352 GAGCTGGGCAATTCTCTTCTTC 59.318 50.000 0.00 0.00 0.00 2.87
123 124 2.040813 TGAGCTGGGCAATTCTCTTCTT 59.959 45.455 0.00 0.00 0.00 2.52
124 125 1.632409 TGAGCTGGGCAATTCTCTTCT 59.368 47.619 0.00 0.00 0.00 2.85
125 126 2.119801 TGAGCTGGGCAATTCTCTTC 57.880 50.000 0.00 0.00 0.00 2.87
126 127 2.025605 TGATGAGCTGGGCAATTCTCTT 60.026 45.455 0.00 0.00 0.00 2.85
127 128 1.562942 TGATGAGCTGGGCAATTCTCT 59.437 47.619 0.00 0.00 0.00 3.10
128 129 2.048444 TGATGAGCTGGGCAATTCTC 57.952 50.000 0.00 0.00 0.00 2.87
129 130 2.376109 CTTGATGAGCTGGGCAATTCT 58.624 47.619 0.00 0.00 0.00 2.40
130 131 1.407979 CCTTGATGAGCTGGGCAATTC 59.592 52.381 0.00 0.00 0.00 2.17
131 132 1.006281 TCCTTGATGAGCTGGGCAATT 59.994 47.619 0.00 0.00 0.00 2.32
132 133 0.627451 TCCTTGATGAGCTGGGCAAT 59.373 50.000 0.00 0.00 0.00 3.56
133 134 0.405198 TTCCTTGATGAGCTGGGCAA 59.595 50.000 0.00 0.00 0.00 4.52
134 135 0.405198 TTTCCTTGATGAGCTGGGCA 59.595 50.000 0.00 0.00 0.00 5.36
135 136 1.549203 TTTTCCTTGATGAGCTGGGC 58.451 50.000 0.00 0.00 0.00 5.36
136 137 3.129988 GTGATTTTCCTTGATGAGCTGGG 59.870 47.826 0.00 0.00 0.00 4.45
137 138 3.181503 CGTGATTTTCCTTGATGAGCTGG 60.182 47.826 0.00 0.00 0.00 4.85
138 139 3.730061 GCGTGATTTTCCTTGATGAGCTG 60.730 47.826 0.00 0.00 0.00 4.24
139 140 2.421424 GCGTGATTTTCCTTGATGAGCT 59.579 45.455 0.00 0.00 0.00 4.09
140 141 2.789092 CGCGTGATTTTCCTTGATGAGC 60.789 50.000 0.00 0.00 0.00 4.26
141 142 2.672874 TCGCGTGATTTTCCTTGATGAG 59.327 45.455 5.77 0.00 0.00 2.90
142 143 2.694213 TCGCGTGATTTTCCTTGATGA 58.306 42.857 5.77 0.00 0.00 2.92
143 144 3.469899 TTCGCGTGATTTTCCTTGATG 57.530 42.857 5.77 0.00 0.00 3.07
144 145 4.497473 TTTTCGCGTGATTTTCCTTGAT 57.503 36.364 5.77 0.00 0.00 2.57
145 146 3.972950 TTTTCGCGTGATTTTCCTTGA 57.027 38.095 5.77 0.00 0.00 3.02
146 147 6.683090 TTAATTTTCGCGTGATTTTCCTTG 57.317 33.333 5.77 0.00 0.00 3.61
147 148 7.596995 TGATTTAATTTTCGCGTGATTTTCCTT 59.403 29.630 5.77 0.00 0.00 3.36
148 149 7.061789 GTGATTTAATTTTCGCGTGATTTTCCT 59.938 33.333 5.77 0.00 0.00 3.36
149 150 7.148885 TGTGATTTAATTTTCGCGTGATTTTCC 60.149 33.333 5.77 0.00 0.00 3.13
150 151 7.715821 TGTGATTTAATTTTCGCGTGATTTTC 58.284 30.769 5.77 4.65 0.00 2.29
151 152 7.630470 TGTGATTTAATTTTCGCGTGATTTT 57.370 28.000 5.77 0.00 0.00 1.82
152 153 7.630470 TTGTGATTTAATTTTCGCGTGATTT 57.370 28.000 5.77 1.68 0.00 2.17
153 154 7.630470 TTTGTGATTTAATTTTCGCGTGATT 57.370 28.000 5.77 7.73 0.00 2.57
154 155 7.810766 ATTTGTGATTTAATTTTCGCGTGAT 57.189 28.000 5.77 0.00 0.00 3.06
155 156 7.007905 GCTATTTGTGATTTAATTTTCGCGTGA 59.992 33.333 5.77 0.00 0.00 4.35
156 157 7.104264 GCTATTTGTGATTTAATTTTCGCGTG 58.896 34.615 5.77 0.00 0.00 5.34
157 158 6.021782 CGCTATTTGTGATTTAATTTTCGCGT 60.022 34.615 5.77 0.00 0.00 6.01
158 159 6.193776 TCGCTATTTGTGATTTAATTTTCGCG 59.806 34.615 0.00 0.00 35.28 5.87
159 160 7.431215 TCGCTATTTGTGATTTAATTTTCGC 57.569 32.000 0.00 0.00 0.00 4.70
162 163 9.971744 GCATTTCGCTATTTGTGATTTAATTTT 57.028 25.926 0.00 0.00 37.77 1.82
163 164 9.149225 TGCATTTCGCTATTTGTGATTTAATTT 57.851 25.926 0.00 0.00 43.06 1.82
164 165 8.594687 GTGCATTTCGCTATTTGTGATTTAATT 58.405 29.630 0.00 0.00 43.06 1.40
165 166 7.758980 TGTGCATTTCGCTATTTGTGATTTAAT 59.241 29.630 0.00 0.00 43.06 1.40
166 167 7.087007 TGTGCATTTCGCTATTTGTGATTTAA 58.913 30.769 0.00 0.00 43.06 1.52
167 168 6.616017 TGTGCATTTCGCTATTTGTGATTTA 58.384 32.000 0.00 0.00 43.06 1.40
168 169 5.468592 TGTGCATTTCGCTATTTGTGATTT 58.531 33.333 0.00 0.00 43.06 2.17
169 170 5.058149 TGTGCATTTCGCTATTTGTGATT 57.942 34.783 0.00 0.00 43.06 2.57
170 171 4.700268 TGTGCATTTCGCTATTTGTGAT 57.300 36.364 0.00 0.00 43.06 3.06
171 172 4.495911 TTGTGCATTTCGCTATTTGTGA 57.504 36.364 0.00 0.00 43.06 3.58
172 173 5.573296 TTTTGTGCATTTCGCTATTTGTG 57.427 34.783 0.00 0.00 43.06 3.33
173 174 5.982516 TCTTTTTGTGCATTTCGCTATTTGT 59.017 32.000 0.00 0.00 43.06 2.83
174 175 6.450845 TCTTTTTGTGCATTTCGCTATTTG 57.549 33.333 0.00 0.00 43.06 2.32
175 176 7.475771 TTTCTTTTTGTGCATTTCGCTATTT 57.524 28.000 0.00 0.00 43.06 1.40
176 177 7.475771 TTTTCTTTTTGTGCATTTCGCTATT 57.524 28.000 0.00 0.00 43.06 1.73
177 178 7.475771 TTTTTCTTTTTGTGCATTTCGCTAT 57.524 28.000 0.00 0.00 43.06 2.97
178 179 6.893958 TTTTTCTTTTTGTGCATTTCGCTA 57.106 29.167 0.00 0.00 43.06 4.26
179 180 5.793026 TTTTTCTTTTTGTGCATTTCGCT 57.207 30.435 0.00 0.00 43.06 4.93
198 199 5.971260 ACCCTATCCCTAAGCTCTAGTTTTT 59.029 40.000 0.00 0.00 0.00 1.94
199 200 5.539842 ACCCTATCCCTAAGCTCTAGTTTT 58.460 41.667 0.00 0.00 0.00 2.43
200 201 5.159139 ACCCTATCCCTAAGCTCTAGTTT 57.841 43.478 0.00 0.00 0.00 2.66
201 202 4.836255 ACCCTATCCCTAAGCTCTAGTT 57.164 45.455 0.00 0.00 0.00 2.24
202 203 4.836255 AACCCTATCCCTAAGCTCTAGT 57.164 45.455 0.00 0.00 0.00 2.57
203 204 6.553857 TCTAAACCCTATCCCTAAGCTCTAG 58.446 44.000 0.00 0.00 0.00 2.43
204 205 6.541264 TCTAAACCCTATCCCTAAGCTCTA 57.459 41.667 0.00 0.00 0.00 2.43
205 206 5.420215 TCTAAACCCTATCCCTAAGCTCT 57.580 43.478 0.00 0.00 0.00 4.09
206 207 5.780793 TCATCTAAACCCTATCCCTAAGCTC 59.219 44.000 0.00 0.00 0.00 4.09
207 208 5.727630 TCATCTAAACCCTATCCCTAAGCT 58.272 41.667 0.00 0.00 0.00 3.74
208 209 6.231951 GTTCATCTAAACCCTATCCCTAAGC 58.768 44.000 0.00 0.00 0.00 3.09
209 210 6.456501 CGTTCATCTAAACCCTATCCCTAAG 58.543 44.000 0.00 0.00 0.00 2.18
210 211 5.221581 GCGTTCATCTAAACCCTATCCCTAA 60.222 44.000 0.00 0.00 0.00 2.69
211 212 4.282703 GCGTTCATCTAAACCCTATCCCTA 59.717 45.833 0.00 0.00 0.00 3.53
212 213 3.071167 GCGTTCATCTAAACCCTATCCCT 59.929 47.826 0.00 0.00 0.00 4.20
213 214 3.181458 TGCGTTCATCTAAACCCTATCCC 60.181 47.826 0.00 0.00 0.00 3.85
214 215 3.808174 GTGCGTTCATCTAAACCCTATCC 59.192 47.826 0.00 0.00 0.00 2.59
215 216 4.439057 TGTGCGTTCATCTAAACCCTATC 58.561 43.478 0.00 0.00 0.00 2.08
216 217 4.481368 TGTGCGTTCATCTAAACCCTAT 57.519 40.909 0.00 0.00 0.00 2.57
217 218 3.965379 TGTGCGTTCATCTAAACCCTA 57.035 42.857 0.00 0.00 0.00 3.53
218 219 2.851263 TGTGCGTTCATCTAAACCCT 57.149 45.000 0.00 0.00 0.00 4.34
219 220 2.354821 GGATGTGCGTTCATCTAAACCC 59.645 50.000 16.78 2.37 42.45 4.11
220 221 3.006940 TGGATGTGCGTTCATCTAAACC 58.993 45.455 16.78 6.06 42.45 3.27
221 222 4.094887 ACATGGATGTGCGTTCATCTAAAC 59.905 41.667 16.78 5.84 42.45 2.01
222 223 4.260985 ACATGGATGTGCGTTCATCTAAA 58.739 39.130 16.78 7.80 42.45 1.85
223 224 3.871006 GACATGGATGTGCGTTCATCTAA 59.129 43.478 16.78 9.53 41.95 2.10
224 225 3.132824 AGACATGGATGTGCGTTCATCTA 59.867 43.478 16.78 13.26 41.95 1.98
225 226 2.093288 AGACATGGATGTGCGTTCATCT 60.093 45.455 16.78 2.96 41.95 2.90
226 227 2.031314 CAGACATGGATGTGCGTTCATC 59.969 50.000 11.55 11.55 41.95 2.92
227 228 2.011947 CAGACATGGATGTGCGTTCAT 58.988 47.619 0.00 0.00 41.95 2.57
228 229 1.001860 TCAGACATGGATGTGCGTTCA 59.998 47.619 0.00 0.00 41.95 3.18
229 230 1.394917 GTCAGACATGGATGTGCGTTC 59.605 52.381 0.00 0.00 41.95 3.95
230 231 1.442769 GTCAGACATGGATGTGCGTT 58.557 50.000 0.00 0.00 41.95 4.84
231 232 0.737367 CGTCAGACATGGATGTGCGT 60.737 55.000 0.41 0.00 41.95 5.24
232 233 2.001357 CGTCAGACATGGATGTGCG 58.999 57.895 0.41 1.85 41.95 5.34
233 234 0.742281 AGCGTCAGACATGGATGTGC 60.742 55.000 0.41 4.73 41.95 4.57
234 235 1.284657 GAGCGTCAGACATGGATGTG 58.715 55.000 0.41 0.00 41.95 3.21
235 236 0.897621 TGAGCGTCAGACATGGATGT 59.102 50.000 0.41 0.00 45.16 3.06
236 237 2.014335 TTGAGCGTCAGACATGGATG 57.986 50.000 0.41 0.00 0.00 3.51
237 238 2.768253 TTTGAGCGTCAGACATGGAT 57.232 45.000 0.41 0.00 0.00 3.41
238 239 2.349590 CATTTGAGCGTCAGACATGGA 58.650 47.619 0.41 0.00 0.00 3.41
239 240 1.399440 CCATTTGAGCGTCAGACATGG 59.601 52.381 0.41 1.27 0.00 3.66
240 241 2.079158 ACCATTTGAGCGTCAGACATG 58.921 47.619 0.41 0.00 0.00 3.21
241 242 2.479566 ACCATTTGAGCGTCAGACAT 57.520 45.000 0.41 0.00 0.00 3.06
242 243 3.244078 ACTTACCATTTGAGCGTCAGACA 60.244 43.478 0.41 0.00 0.00 3.41
243 244 3.326747 ACTTACCATTTGAGCGTCAGAC 58.673 45.455 0.00 0.00 0.00 3.51
244 245 3.006430 TGACTTACCATTTGAGCGTCAGA 59.994 43.478 0.00 0.00 0.00 3.27
245 246 3.325870 TGACTTACCATTTGAGCGTCAG 58.674 45.455 0.00 0.00 0.00 3.51
246 247 3.394674 TGACTTACCATTTGAGCGTCA 57.605 42.857 0.00 0.00 0.00 4.35
247 248 4.201822 GGATTGACTTACCATTTGAGCGTC 60.202 45.833 0.00 0.00 0.00 5.19
248 249 3.689649 GGATTGACTTACCATTTGAGCGT 59.310 43.478 0.00 0.00 0.00 5.07
249 250 3.689161 TGGATTGACTTACCATTTGAGCG 59.311 43.478 0.00 0.00 0.00 5.03
250 251 5.402398 GTTGGATTGACTTACCATTTGAGC 58.598 41.667 0.00 0.00 33.56 4.26
251 252 5.391950 CCGTTGGATTGACTTACCATTTGAG 60.392 44.000 0.00 0.00 33.56 3.02
252 253 4.457603 CCGTTGGATTGACTTACCATTTGA 59.542 41.667 0.00 0.00 33.56 2.69
253 254 4.732784 CCGTTGGATTGACTTACCATTTG 58.267 43.478 0.00 0.00 33.56 2.32
254 255 3.192633 GCCGTTGGATTGACTTACCATTT 59.807 43.478 0.00 0.00 33.56 2.32
255 256 2.752903 GCCGTTGGATTGACTTACCATT 59.247 45.455 0.00 0.00 33.56 3.16
256 257 2.026262 AGCCGTTGGATTGACTTACCAT 60.026 45.455 0.00 0.00 33.56 3.55
257 258 1.349688 AGCCGTTGGATTGACTTACCA 59.650 47.619 0.00 0.00 0.00 3.25
258 259 2.007608 GAGCCGTTGGATTGACTTACC 58.992 52.381 0.00 0.00 0.00 2.85
259 260 2.415512 GTGAGCCGTTGGATTGACTTAC 59.584 50.000 0.00 0.00 0.00 2.34
260 261 2.695359 GTGAGCCGTTGGATTGACTTA 58.305 47.619 0.00 0.00 0.00 2.24
261 262 1.523758 GTGAGCCGTTGGATTGACTT 58.476 50.000 0.00 0.00 0.00 3.01
262 263 0.670546 CGTGAGCCGTTGGATTGACT 60.671 55.000 0.00 0.00 0.00 3.41
263 264 0.669318 TCGTGAGCCGTTGGATTGAC 60.669 55.000 0.00 0.00 37.94 3.18
264 265 0.034198 TTCGTGAGCCGTTGGATTGA 59.966 50.000 0.00 0.00 37.94 2.57
265 266 1.062587 GATTCGTGAGCCGTTGGATTG 59.937 52.381 0.00 0.00 37.94 2.67
266 267 1.369625 GATTCGTGAGCCGTTGGATT 58.630 50.000 0.00 0.00 37.94 3.01
267 268 0.806102 CGATTCGTGAGCCGTTGGAT 60.806 55.000 0.00 0.00 37.94 3.41
268 269 1.445410 CGATTCGTGAGCCGTTGGA 60.445 57.895 0.00 0.00 37.94 3.53
269 270 1.445410 TCGATTCGTGAGCCGTTGG 60.445 57.895 5.89 0.00 37.94 3.77
270 271 0.732880 AGTCGATTCGTGAGCCGTTG 60.733 55.000 5.89 0.00 37.94 4.10
271 272 0.732880 CAGTCGATTCGTGAGCCGTT 60.733 55.000 5.89 0.00 37.94 4.44
272 273 1.154016 CAGTCGATTCGTGAGCCGT 60.154 57.895 5.89 0.00 37.94 5.68
273 274 0.248661 ATCAGTCGATTCGTGAGCCG 60.249 55.000 5.89 0.00 38.13 5.52
274 275 2.776312 TATCAGTCGATTCGTGAGCC 57.224 50.000 5.89 0.00 32.73 4.70
275 276 3.666334 GTGATATCAGTCGATTCGTGAGC 59.334 47.826 5.42 0.00 32.73 4.26
276 277 3.903054 CGTGATATCAGTCGATTCGTGAG 59.097 47.826 5.42 0.00 32.73 3.51
277 278 3.311596 ACGTGATATCAGTCGATTCGTGA 59.688 43.478 19.19 3.94 32.73 4.35
278 279 3.418944 CACGTGATATCAGTCGATTCGTG 59.581 47.826 20.95 20.95 36.28 4.35
279 280 3.618698 CACGTGATATCAGTCGATTCGT 58.381 45.455 19.19 14.07 32.73 3.85
280 281 2.402049 GCACGTGATATCAGTCGATTCG 59.598 50.000 22.23 13.51 32.73 3.34
281 282 2.726760 GGCACGTGATATCAGTCGATTC 59.273 50.000 22.23 9.22 32.73 2.52
282 283 2.362397 AGGCACGTGATATCAGTCGATT 59.638 45.455 22.23 0.00 32.73 3.34
283 284 1.957177 AGGCACGTGATATCAGTCGAT 59.043 47.619 22.23 4.52 35.50 3.59
284 285 1.389555 AGGCACGTGATATCAGTCGA 58.610 50.000 22.23 0.00 0.00 4.20
285 286 2.120232 GAAGGCACGTGATATCAGTCG 58.880 52.381 22.23 9.84 0.00 4.18
286 287 2.120232 CGAAGGCACGTGATATCAGTC 58.880 52.381 22.23 4.85 0.00 3.51
287 288 1.476891 ACGAAGGCACGTGATATCAGT 59.523 47.619 22.23 8.42 44.84 3.41
288 289 2.209838 ACGAAGGCACGTGATATCAG 57.790 50.000 22.23 7.74 44.84 2.90
315 316 8.762481 AACAACTTTAACCTCTGTTTTCCTAT 57.238 30.769 0.00 0.00 35.87 2.57
320 321 8.063200 AGCTTAACAACTTTAACCTCTGTTTT 57.937 30.769 0.00 0.00 35.87 2.43
343 351 2.533266 GCATTTGTGCCATGACTAAGC 58.467 47.619 0.00 0.00 0.00 3.09
358 366 2.577700 TGTCAGTTAACCACCGCATTT 58.422 42.857 0.88 0.00 0.00 2.32
359 367 2.264005 TGTCAGTTAACCACCGCATT 57.736 45.000 0.88 0.00 0.00 3.56
426 434 9.857957 TGTACGTGTTAGTCACATTGAATATTA 57.142 29.630 0.00 0.00 46.44 0.98
429 437 7.372714 AGTGTACGTGTTAGTCACATTGAATA 58.627 34.615 0.00 0.00 46.44 1.75
519 527 4.588528 AGGTACACATTTTGTTGCCTGATT 59.411 37.500 0.00 0.00 39.52 2.57
520 528 4.151883 AGGTACACATTTTGTTGCCTGAT 58.848 39.130 0.00 0.00 39.52 2.90
616 959 2.110578 GCTTGCCCATGGAACCTAAAT 58.889 47.619 15.22 0.00 0.00 1.40
645 991 1.401552 TCTCAAATGCCACTATTGCGC 59.598 47.619 0.00 0.00 0.00 6.09
727 1074 2.835764 AGCATAGTCCCTTTTACCGACA 59.164 45.455 0.00 0.00 0.00 4.35
730 1077 6.937436 ATTTTAGCATAGTCCCTTTTACCG 57.063 37.500 0.00 0.00 0.00 4.02
777 1147 2.096119 CCACGTCACGTAATTTGGGAAC 60.096 50.000 0.41 0.00 38.32 3.62
822 1192 2.859032 GCCACCGACTCTCGCTTATAAG 60.859 54.545 8.20 8.20 38.82 1.73
823 1193 1.066605 GCCACCGACTCTCGCTTATAA 59.933 52.381 0.00 0.00 38.82 0.98
867 1237 2.453080 CGCGTACTTTATAGGCGTTCA 58.547 47.619 11.64 0.00 43.87 3.18
957 1330 3.421569 CCGACGAGAAGTACGATACGATC 60.422 52.174 0.00 0.00 34.70 3.69
958 1331 2.474359 CCGACGAGAAGTACGATACGAT 59.526 50.000 0.00 0.00 34.70 3.73
959 1332 1.854743 CCGACGAGAAGTACGATACGA 59.145 52.381 0.00 0.00 34.70 3.43
960 1333 1.655876 GCCGACGAGAAGTACGATACG 60.656 57.143 0.00 0.00 34.70 3.06
961 1334 1.655876 CGCCGACGAGAAGTACGATAC 60.656 57.143 0.00 0.00 43.93 2.24
962 1335 0.578683 CGCCGACGAGAAGTACGATA 59.421 55.000 0.00 0.00 43.93 2.92
1113 1486 1.335132 AACAGGAGGGACACGTGTGT 61.335 55.000 28.82 13.10 46.11 3.72
1117 1490 2.571216 CGGAACAGGAGGGACACGT 61.571 63.158 0.00 0.00 0.00 4.49
1251 1639 0.240945 ATACAAAGGCGCACTTGCAC 59.759 50.000 17.68 0.00 39.96 4.57
1268 1668 1.125633 GAAGGTTGGGGAGCCGTATA 58.874 55.000 0.00 0.00 0.00 1.47
1281 1682 0.031721 GACACTCGGACGTGAAGGTT 59.968 55.000 0.00 0.00 38.27 3.50
1379 1780 1.827344 ACGGGTGTAAGTAAGGGTAGC 59.173 52.381 0.00 0.00 0.00 3.58
1380 1781 3.381590 GGTACGGGTGTAAGTAAGGGTAG 59.618 52.174 0.00 0.00 30.94 3.18
1467 1868 3.387091 TACACGGCTGGCGATGGT 61.387 61.111 30.58 23.64 0.00 3.55
1644 2069 0.320771 CCTTAGCGTGGACAAGCACT 60.321 55.000 12.43 0.00 38.28 4.40
1650 2075 3.712907 GGGGCCTTAGCGTGGACA 61.713 66.667 0.84 0.00 41.24 4.02
1757 2182 2.628697 CTTCAGCAGCGCGATCTTGC 62.629 60.000 12.10 13.78 0.00 4.01
1833 2258 3.479269 GCGTCCGTTGAGAAGGCG 61.479 66.667 0.00 0.00 0.00 5.52
1930 2355 5.658190 CCTTGAGGATATTTGTTCCACCATT 59.342 40.000 0.00 0.00 37.39 3.16
2063 2488 1.732308 CCGTAGCCGTAACCTCCTC 59.268 63.158 0.00 0.00 0.00 3.71
2064 2489 2.421399 GCCGTAGCCGTAACCTCCT 61.421 63.158 0.00 0.00 0.00 3.69
2065 2490 2.105729 GCCGTAGCCGTAACCTCC 59.894 66.667 0.00 0.00 0.00 4.30
2066 2491 1.065436 GAGCCGTAGCCGTAACCTC 59.935 63.158 0.00 0.00 41.25 3.85
2067 2492 2.768492 CGAGCCGTAGCCGTAACCT 61.768 63.158 0.00 0.00 41.25 3.50
2068 2493 2.278401 CGAGCCGTAGCCGTAACC 60.278 66.667 0.00 0.00 41.25 2.85
2154 2600 2.239124 AAACGTGTGTACCGGCGTG 61.239 57.895 6.01 0.00 37.64 5.34
2161 2607 0.233848 CCGAAGCCAAACGTGTGTAC 59.766 55.000 4.73 0.00 0.00 2.90
2311 2757 2.588314 GATGAGCGCCTCCTGCAG 60.588 66.667 6.78 6.78 41.33 4.41
2545 2992 3.625897 CACCACCTGCCCTGTCGA 61.626 66.667 0.00 0.00 0.00 4.20
2598 3045 3.636231 TCCTTGGCCACCTCCACG 61.636 66.667 3.88 0.00 35.50 4.94
3131 3600 3.581163 GGGCCCCGATTTTAGTTGA 57.419 52.632 12.23 0.00 0.00 3.18
3145 3618 2.127232 CATTTGGATCCACCGGGCC 61.127 63.158 15.91 0.00 42.61 5.80
3147 3620 1.095228 CGACATTTGGATCCACCGGG 61.095 60.000 15.91 7.14 42.61 5.73
3161 3634 0.179187 CGAAGACTGAGTCGCGACAT 60.179 55.000 37.85 23.95 37.39 3.06
3163 3636 0.790124 GACGAAGACTGAGTCGCGAC 60.790 60.000 31.30 31.30 40.95 5.19
3168 3641 2.250348 CGAAGGACGAAGACTGAGTC 57.750 55.000 3.98 3.98 45.77 3.36
3181 3657 4.870426 GTGCAAGATAACTGAATCGAAGGA 59.130 41.667 0.00 0.00 0.00 3.36
3191 3667 6.073222 ACGGAAGTAAAAGTGCAAGATAACTG 60.073 38.462 0.00 0.00 46.88 3.16
3213 3695 7.996098 ACCCCATAAATAAAATATGAGACGG 57.004 36.000 0.00 0.00 33.49 4.79
3305 3787 9.569167 CAACCACAATATAACTCGACGATATAT 57.431 33.333 0.00 1.63 0.00 0.86
3357 3859 2.941891 AACAGCGACACATTAACGTG 57.058 45.000 0.00 0.00 42.81 4.49
3370 3872 3.247648 AGCAAACAGTACACTTAACAGCG 59.752 43.478 0.00 0.00 0.00 5.18
3374 3876 5.941948 ATCCAGCAAACAGTACACTTAAC 57.058 39.130 0.00 0.00 0.00 2.01
3382 3884 8.318412 TGAGAAAGTATTATCCAGCAAACAGTA 58.682 33.333 0.00 0.00 0.00 2.74
3386 3888 8.897752 AGATTGAGAAAGTATTATCCAGCAAAC 58.102 33.333 0.00 0.00 0.00 2.93
3387 3889 9.113838 GAGATTGAGAAAGTATTATCCAGCAAA 57.886 33.333 0.00 0.00 0.00 3.68
3388 3890 8.489489 AGAGATTGAGAAAGTATTATCCAGCAA 58.511 33.333 0.00 0.00 0.00 3.91
3389 3891 8.027524 AGAGATTGAGAAAGTATTATCCAGCA 57.972 34.615 0.00 0.00 0.00 4.41
3390 3892 8.900983 AAGAGATTGAGAAAGTATTATCCAGC 57.099 34.615 0.00 0.00 0.00 4.85
3540 4045 4.766375 AGATGTTTGTATAGACCGGTTGG 58.234 43.478 9.42 0.00 42.84 3.77
3554 4059 7.122650 TGGGGCTTCTTTTATTCTAGATGTTTG 59.877 37.037 0.00 0.00 0.00 2.93
3564 4069 3.769300 ACATGGTGGGGCTTCTTTTATTC 59.231 43.478 0.00 0.00 0.00 1.75
3567 4097 2.109128 TCACATGGTGGGGCTTCTTTTA 59.891 45.455 0.00 0.00 33.87 1.52
3577 4107 2.170397 TGCTACACTATCACATGGTGGG 59.830 50.000 0.00 0.00 44.90 4.61
3634 4165 7.563724 ACCAACCTATATATACGTGGGAAAT 57.436 36.000 17.57 0.00 0.00 2.17
3683 4214 2.490509 GGTTATTTGGTGGGACTTTCGG 59.509 50.000 0.00 0.00 0.00 4.30
3690 4226 8.846423 ATTTATAATGTGGTTATTTGGTGGGA 57.154 30.769 0.00 0.00 34.82 4.37
3818 4358 4.751767 TTGCTTTGAACTTGGGTCAAAT 57.248 36.364 10.53 0.00 33.62 2.32
4011 4572 5.347364 CGTTGGTGTTGTGTTTCTTCAAAAT 59.653 36.000 0.00 0.00 0.00 1.82
4038 4603 3.545124 ATTGGGCGCACTTCACCGA 62.545 57.895 12.74 0.00 0.00 4.69
4040 4605 2.700773 GGATTGGGCGCACTTCACC 61.701 63.158 12.74 5.54 0.00 4.02
4042 4607 0.960364 GAAGGATTGGGCGCACTTCA 60.960 55.000 20.75 0.00 37.92 3.02
4043 4608 0.678048 AGAAGGATTGGGCGCACTTC 60.678 55.000 12.74 19.05 38.20 3.01
4056 4621 7.255730 GGGAGCGTAGTGTATTAAATAGAAGGA 60.256 40.741 0.00 0.00 0.00 3.36
4064 4629 9.101655 GAAAATTAGGGAGCGTAGTGTATTAAA 57.898 33.333 0.00 0.00 0.00 1.52
4076 4642 1.405463 GGCCTTGAAAATTAGGGAGCG 59.595 52.381 0.00 0.00 31.95 5.03
4085 4651 5.750352 ATTGATTGTGAGGCCTTGAAAAT 57.250 34.783 6.77 3.47 0.00 1.82
4090 4656 4.678840 GCCTAAATTGATTGTGAGGCCTTG 60.679 45.833 6.77 0.00 43.02 3.61
4104 4670 8.667463 CAAATACCAAATTGAAGGCCTAAATTG 58.333 33.333 21.23 15.18 0.00 2.32
4108 4674 5.782845 ACCAAATACCAAATTGAAGGCCTAA 59.217 36.000 5.16 0.00 0.00 2.69
4109 4675 5.337788 ACCAAATACCAAATTGAAGGCCTA 58.662 37.500 5.16 0.00 0.00 3.93
4111 4677 4.020662 TGACCAAATACCAAATTGAAGGCC 60.021 41.667 0.00 0.00 0.00 5.19
4113 4679 5.478407 GGTGACCAAATACCAAATTGAAGG 58.522 41.667 0.00 0.00 36.94 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.