Multiple sequence alignment - TraesCS4B01G357100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G357100 chr4B 100.000 3657 0 0 1 3657 647694964 647691308 0.000000e+00 6754.0
1 TraesCS4B01G357100 chr4B 91.416 1759 79 30 952 2700 648269149 648270845 0.000000e+00 2346.0
2 TraesCS4B01G357100 chr4B 91.359 1759 80 30 952 2700 648243119 648244815 0.000000e+00 2340.0
3 TraesCS4B01G357100 chr4B 91.302 1759 81 28 952 2700 648193851 648195547 0.000000e+00 2335.0
4 TraesCS4B01G357100 chr4B 92.768 1521 65 18 1185 2700 648219461 648220941 0.000000e+00 2158.0
5 TraesCS4B01G357100 chr4B 91.566 83 6 1 606 687 648193614 648193696 2.980000e-21 113.0
6 TraesCS4B01G357100 chr4B 91.566 83 6 1 606 687 648219040 648219122 2.980000e-21 113.0
7 TraesCS4B01G357100 chr4B 91.566 83 6 1 606 687 648242883 648242965 2.980000e-21 113.0
8 TraesCS4B01G357100 chr4B 91.566 83 6 1 606 687 648268913 648268995 2.980000e-21 113.0
9 TraesCS4B01G357100 chr4B 92.105 76 5 1 849 923 648219201 648219276 4.990000e-19 106.0
10 TraesCS4B01G357100 chr4B 92.105 76 5 1 849 923 648243045 648243120 4.990000e-19 106.0
11 TraesCS4B01G357100 chr4B 92.105 76 5 1 849 923 648269075 648269150 4.990000e-19 106.0
12 TraesCS4B01G357100 chr4B 90.789 76 6 1 849 923 648193777 648193852 2.320000e-17 100.0
13 TraesCS4B01G357100 chr4B 96.296 54 2 0 337 390 648193556 648193609 5.030000e-14 89.8
14 TraesCS4B01G357100 chr4B 96.296 54 2 0 337 390 648218982 648219035 5.030000e-14 89.8
15 TraesCS4B01G357100 chr4B 96.296 54 2 0 337 390 648242825 648242878 5.030000e-14 89.8
16 TraesCS4B01G357100 chr4B 96.296 54 2 0 337 390 648268855 648268908 5.030000e-14 89.8
17 TraesCS4B01G357100 chr4D 91.176 2040 97 36 718 2714 503175519 503177518 0.000000e+00 2693.0
18 TraesCS4B01G357100 chr4D 92.651 381 19 6 316 687 503175198 503175578 1.160000e-149 540.0
19 TraesCS4B01G357100 chr5A 90.526 1995 118 36 734 2677 687654759 687656733 0.000000e+00 2571.0
20 TraesCS4B01G357100 chr5A 89.927 953 83 12 2714 3657 702452580 702453528 0.000000e+00 1216.0
21 TraesCS4B01G357100 chr5A 89.695 951 90 8 2714 3657 561139151 561140100 0.000000e+00 1206.0
22 TraesCS4B01G357100 chr5A 91.111 225 16 3 316 540 687654327 687654547 5.930000e-78 302.0
23 TraesCS4B01G357100 chr6A 90.526 950 82 8 2714 3657 7713832 7712885 0.000000e+00 1249.0
24 TraesCS4B01G357100 chr6A 90.011 951 84 11 2714 3657 559750650 559749704 0.000000e+00 1219.0
25 TraesCS4B01G357100 chr6A 86.720 1009 119 11 1365 2368 7398206 7397208 0.000000e+00 1107.0
26 TraesCS4B01G357100 chr4A 90.316 950 84 8 2714 3657 555797972 555797025 0.000000e+00 1238.0
27 TraesCS4B01G357100 chr4A 96.541 318 10 1 1 317 716732531 716732848 3.240000e-145 525.0
28 TraesCS4B01G357100 chr4A 78.832 137 21 6 1097 1230 707674860 707674991 6.510000e-13 86.1
29 TraesCS4B01G357100 chr4A 77.372 137 23 6 1097 1230 707702319 707702450 1.410000e-09 75.0
30 TraesCS4B01G357100 chr6B 90.126 952 83 11 2712 3657 638937464 638938410 0.000000e+00 1227.0
31 TraesCS4B01G357100 chr6B 86.065 1019 130 9 1354 2367 14126525 14127536 0.000000e+00 1085.0
32 TraesCS4B01G357100 chr6B 85.473 1005 136 8 1365 2368 13975261 13974266 0.000000e+00 1038.0
33 TraesCS4B01G357100 chr1B 89.989 949 88 7 2714 3657 563036627 563035681 0.000000e+00 1219.0
34 TraesCS4B01G357100 chr1B 96.855 318 9 1 1 317 429009644 429009961 6.950000e-147 531.0
35 TraesCS4B01G357100 chr1B 96.250 320 8 3 2 318 234126327 234126645 4.180000e-144 521.0
36 TraesCS4B01G357100 chr7A 89.916 952 83 12 2714 3657 16638423 16639369 0.000000e+00 1214.0
37 TraesCS4B01G357100 chr7A 97.771 314 6 1 4 316 683646035 683645722 1.160000e-149 540.0
38 TraesCS4B01G357100 chr2B 89.916 952 83 13 2714 3657 798491759 798490813 0.000000e+00 1214.0
39 TraesCS4B01G357100 chr6D 86.022 1023 120 14 1354 2367 7552302 7553310 0.000000e+00 1075.0
40 TraesCS4B01G357100 chr3B 96.855 318 5 2 4 316 817081173 817080856 8.990000e-146 527.0
41 TraesCS4B01G357100 chr3B 96.530 317 10 1 1 316 47268049 47268365 1.160000e-144 523.0
42 TraesCS4B01G357100 chr5B 96.825 315 7 2 1 314 442371947 442372259 1.160000e-144 523.0
43 TraesCS4B01G357100 chr2A 96.541 318 8 2 1 317 775432388 775432703 1.160000e-144 523.0
44 TraesCS4B01G357100 chrUn 96.815 314 7 2 4 316 263435399 263435088 4.180000e-144 521.0
45 TraesCS4B01G357100 chr7D 81.739 115 16 4 1117 1230 24021164 24021054 1.400000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G357100 chr4B 647691308 647694964 3656 True 6754.00 6754 100.00000 1 3657 1 chr4B.!!$R1 3656
1 TraesCS4B01G357100 chr4B 648268855 648270845 1990 False 663.70 2346 92.84575 337 2700 4 chr4B.!!$F4 2363
2 TraesCS4B01G357100 chr4B 648242825 648244815 1990 False 662.20 2340 92.83150 337 2700 4 chr4B.!!$F3 2363
3 TraesCS4B01G357100 chr4B 648193556 648195547 1991 False 659.45 2335 92.48825 337 2700 4 chr4B.!!$F1 2363
4 TraesCS4B01G357100 chr4B 648218982 648220941 1959 False 616.70 2158 93.18375 337 2700 4 chr4B.!!$F2 2363
5 TraesCS4B01G357100 chr4D 503175198 503177518 2320 False 1616.50 2693 91.91350 316 2714 2 chr4D.!!$F1 2398
6 TraesCS4B01G357100 chr5A 687654327 687656733 2406 False 1436.50 2571 90.81850 316 2677 2 chr5A.!!$F3 2361
7 TraesCS4B01G357100 chr5A 702452580 702453528 948 False 1216.00 1216 89.92700 2714 3657 1 chr5A.!!$F2 943
8 TraesCS4B01G357100 chr5A 561139151 561140100 949 False 1206.00 1206 89.69500 2714 3657 1 chr5A.!!$F1 943
9 TraesCS4B01G357100 chr6A 7712885 7713832 947 True 1249.00 1249 90.52600 2714 3657 1 chr6A.!!$R2 943
10 TraesCS4B01G357100 chr6A 559749704 559750650 946 True 1219.00 1219 90.01100 2714 3657 1 chr6A.!!$R3 943
11 TraesCS4B01G357100 chr6A 7397208 7398206 998 True 1107.00 1107 86.72000 1365 2368 1 chr6A.!!$R1 1003
12 TraesCS4B01G357100 chr4A 555797025 555797972 947 True 1238.00 1238 90.31600 2714 3657 1 chr4A.!!$R1 943
13 TraesCS4B01G357100 chr6B 638937464 638938410 946 False 1227.00 1227 90.12600 2712 3657 1 chr6B.!!$F2 945
14 TraesCS4B01G357100 chr6B 14126525 14127536 1011 False 1085.00 1085 86.06500 1354 2367 1 chr6B.!!$F1 1013
15 TraesCS4B01G357100 chr6B 13974266 13975261 995 True 1038.00 1038 85.47300 1365 2368 1 chr6B.!!$R1 1003
16 TraesCS4B01G357100 chr1B 563035681 563036627 946 True 1219.00 1219 89.98900 2714 3657 1 chr1B.!!$R1 943
17 TraesCS4B01G357100 chr7A 16638423 16639369 946 False 1214.00 1214 89.91600 2714 3657 1 chr7A.!!$F1 943
18 TraesCS4B01G357100 chr2B 798490813 798491759 946 True 1214.00 1214 89.91600 2714 3657 1 chr2B.!!$R1 943
19 TraesCS4B01G357100 chr6D 7552302 7553310 1008 False 1075.00 1075 86.02200 1354 2367 1 chr6D.!!$F1 1013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 832 0.033920 GGGCCCAAGCTTTCACAAAG 59.966 55.0 19.95 0.0 41.46 2.77 F
991 1122 0.169672 CAAGCTTGGCGGATCACTTG 59.830 55.0 19.14 0.0 0.00 3.16 F
1004 1135 0.249447 TCACTTGGACACGCACTCAG 60.249 55.0 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2304 0.107214 TCCACCTCGCATTCCCATTC 60.107 55.0 0.00 0.00 0.00 2.67 R
2439 2677 0.249114 TGACACACGCGTACACACAT 60.249 50.0 13.44 0.00 0.00 3.21 R
2737 2978 0.390472 CTTGGTCCTCGGCAGAAGAC 60.390 60.0 7.03 7.03 37.16 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.579207 TCTTCCGCGTATTCTTGGAG 57.421 50.000 4.92 0.00 0.00 3.86
20 21 0.931005 CTTCCGCGTATTCTTGGAGC 59.069 55.000 4.92 0.00 0.00 4.70
21 22 0.535335 TTCCGCGTATTCTTGGAGCT 59.465 50.000 4.92 0.00 0.00 4.09
22 23 0.179111 TCCGCGTATTCTTGGAGCTG 60.179 55.000 4.92 0.00 0.00 4.24
23 24 0.460284 CCGCGTATTCTTGGAGCTGT 60.460 55.000 4.92 0.00 0.00 4.40
24 25 0.647410 CGCGTATTCTTGGAGCTGTG 59.353 55.000 0.00 0.00 0.00 3.66
25 26 1.009829 GCGTATTCTTGGAGCTGTGG 58.990 55.000 0.00 0.00 0.00 4.17
26 27 1.009829 CGTATTCTTGGAGCTGTGGC 58.990 55.000 0.00 0.00 39.06 5.01
36 37 2.964978 GCTGTGGCTTGCCGATTT 59.035 55.556 7.18 0.00 35.22 2.17
37 38 2.179764 GCTGTGGCTTGCCGATTTA 58.820 52.632 7.18 0.00 35.22 1.40
38 39 0.179163 GCTGTGGCTTGCCGATTTAC 60.179 55.000 7.18 0.00 35.22 2.01
39 40 1.164411 CTGTGGCTTGCCGATTTACA 58.836 50.000 7.18 4.58 0.00 2.41
40 41 1.745087 CTGTGGCTTGCCGATTTACAT 59.255 47.619 7.18 0.00 0.00 2.29
41 42 1.472082 TGTGGCTTGCCGATTTACATG 59.528 47.619 7.18 0.00 0.00 3.21
42 43 1.742831 GTGGCTTGCCGATTTACATGA 59.257 47.619 0.00 0.00 0.00 3.07
43 44 2.163412 GTGGCTTGCCGATTTACATGAA 59.837 45.455 0.00 0.00 0.00 2.57
44 45 2.822561 TGGCTTGCCGATTTACATGAAA 59.177 40.909 0.00 0.00 0.00 2.69
45 46 3.446873 TGGCTTGCCGATTTACATGAAAT 59.553 39.130 0.00 1.08 40.62 2.17
46 47 4.081752 TGGCTTGCCGATTTACATGAAATT 60.082 37.500 0.00 0.00 37.90 1.82
47 48 5.126222 TGGCTTGCCGATTTACATGAAATTA 59.874 36.000 0.00 0.00 37.90 1.40
48 49 6.039616 GGCTTGCCGATTTACATGAAATTAA 58.960 36.000 0.00 0.00 37.90 1.40
49 50 6.701400 GGCTTGCCGATTTACATGAAATTAAT 59.299 34.615 0.00 0.00 37.90 1.40
50 51 7.224557 GGCTTGCCGATTTACATGAAATTAATT 59.775 33.333 0.00 0.00 37.90 1.40
51 52 8.268738 GCTTGCCGATTTACATGAAATTAATTC 58.731 33.333 0.00 0.00 37.90 2.17
52 53 8.641499 TTGCCGATTTACATGAAATTAATTCC 57.359 30.769 0.00 0.00 37.90 3.01
53 54 8.006298 TGCCGATTTACATGAAATTAATTCCT 57.994 30.769 0.00 0.00 37.90 3.36
54 55 8.474025 TGCCGATTTACATGAAATTAATTCCTT 58.526 29.630 0.00 0.00 37.90 3.36
55 56 8.968242 GCCGATTTACATGAAATTAATTCCTTC 58.032 33.333 0.00 0.00 37.90 3.46
63 64 8.526147 ACATGAAATTAATTCCTTCAGTTCTGG 58.474 33.333 0.00 0.00 37.22 3.86
64 65 8.526147 CATGAAATTAATTCCTTCAGTTCTGGT 58.474 33.333 0.10 0.00 37.22 4.00
65 66 7.885297 TGAAATTAATTCCTTCAGTTCTGGTG 58.115 34.615 0.10 0.00 37.22 4.17
66 67 6.840780 AATTAATTCCTTCAGTTCTGGTGG 57.159 37.500 0.00 3.48 0.00 4.61
67 68 2.206576 ATTCCTTCAGTTCTGGTGGC 57.793 50.000 0.00 0.00 0.00 5.01
68 69 0.843309 TTCCTTCAGTTCTGGTGGCA 59.157 50.000 0.00 0.00 0.00 4.92
69 70 0.843309 TCCTTCAGTTCTGGTGGCAA 59.157 50.000 0.00 0.00 0.00 4.52
70 71 1.214175 TCCTTCAGTTCTGGTGGCAAA 59.786 47.619 0.00 0.00 0.00 3.68
71 72 2.158475 TCCTTCAGTTCTGGTGGCAAAT 60.158 45.455 0.00 0.00 0.00 2.32
72 73 3.073798 TCCTTCAGTTCTGGTGGCAAATA 59.926 43.478 0.00 0.00 0.00 1.40
73 74 4.019174 CCTTCAGTTCTGGTGGCAAATAT 58.981 43.478 0.00 0.00 0.00 1.28
74 75 5.045213 TCCTTCAGTTCTGGTGGCAAATATA 60.045 40.000 0.00 0.00 0.00 0.86
75 76 5.652014 CCTTCAGTTCTGGTGGCAAATATAA 59.348 40.000 0.00 0.00 0.00 0.98
76 77 6.322201 CCTTCAGTTCTGGTGGCAAATATAAT 59.678 38.462 0.00 0.00 0.00 1.28
77 78 7.502226 CCTTCAGTTCTGGTGGCAAATATAATA 59.498 37.037 0.00 0.00 0.00 0.98
78 79 7.801716 TCAGTTCTGGTGGCAAATATAATAC 57.198 36.000 0.00 0.00 0.00 1.89
79 80 7.342581 TCAGTTCTGGTGGCAAATATAATACA 58.657 34.615 0.00 0.00 0.00 2.29
80 81 7.282224 TCAGTTCTGGTGGCAAATATAATACAC 59.718 37.037 0.00 0.00 0.00 2.90
81 82 7.066887 CAGTTCTGGTGGCAAATATAATACACA 59.933 37.037 0.00 0.00 0.00 3.72
82 83 7.779798 AGTTCTGGTGGCAAATATAATACACAT 59.220 33.333 0.00 0.00 0.00 3.21
83 84 9.062524 GTTCTGGTGGCAAATATAATACACATA 57.937 33.333 0.00 0.00 0.00 2.29
84 85 9.634021 TTCTGGTGGCAAATATAATACACATAA 57.366 29.630 0.00 0.00 0.00 1.90
85 86 9.806448 TCTGGTGGCAAATATAATACACATAAT 57.194 29.630 0.00 0.00 0.00 1.28
87 88 9.019656 TGGTGGCAAATATAATACACATAATCC 57.980 33.333 0.00 0.00 0.00 3.01
88 89 9.019656 GGTGGCAAATATAATACACATAATCCA 57.980 33.333 0.00 0.00 0.00 3.41
102 103 8.696043 ACACATAATCCATATTGTTATGCACT 57.304 30.769 0.00 0.00 38.67 4.40
103 104 9.791801 ACACATAATCCATATTGTTATGCACTA 57.208 29.630 0.00 0.00 38.67 2.74
105 106 8.950210 ACATAATCCATATTGTTATGCACTAGC 58.050 33.333 0.00 0.00 38.67 3.42
106 107 6.486253 AATCCATATTGTTATGCACTAGCG 57.514 37.500 0.00 0.00 46.23 4.26
107 108 4.956085 TCCATATTGTTATGCACTAGCGT 58.044 39.130 0.00 0.00 46.23 5.07
108 109 4.749598 TCCATATTGTTATGCACTAGCGTG 59.250 41.667 0.00 0.00 46.23 5.34
109 110 4.511454 CCATATTGTTATGCACTAGCGTGT 59.489 41.667 0.00 0.00 46.23 4.49
110 111 5.434706 CATATTGTTATGCACTAGCGTGTG 58.565 41.667 7.59 7.59 46.23 3.82
111 112 2.448926 TGTTATGCACTAGCGTGTGT 57.551 45.000 12.36 0.00 46.23 3.72
112 113 2.065512 TGTTATGCACTAGCGTGTGTG 58.934 47.619 12.36 5.74 46.23 3.82
113 114 2.066262 GTTATGCACTAGCGTGTGTGT 58.934 47.619 12.36 5.67 46.23 3.72
114 115 1.708822 TATGCACTAGCGTGTGTGTG 58.291 50.000 12.36 0.00 46.23 3.82
115 116 0.249868 ATGCACTAGCGTGTGTGTGT 60.250 50.000 12.36 0.00 46.23 3.72
116 117 1.151172 TGCACTAGCGTGTGTGTGTG 61.151 55.000 12.36 0.00 46.23 3.82
117 118 0.874175 GCACTAGCGTGTGTGTGTGA 60.874 55.000 12.36 0.00 43.16 3.58
118 119 1.566404 CACTAGCGTGTGTGTGTGAA 58.434 50.000 4.34 0.00 36.39 3.18
119 120 1.930503 CACTAGCGTGTGTGTGTGAAA 59.069 47.619 4.34 0.00 36.39 2.69
120 121 2.543848 CACTAGCGTGTGTGTGTGAAAT 59.456 45.455 4.34 0.00 36.39 2.17
121 122 3.738791 CACTAGCGTGTGTGTGTGAAATA 59.261 43.478 4.34 0.00 36.39 1.40
122 123 3.987868 ACTAGCGTGTGTGTGTGAAATAG 59.012 43.478 0.00 0.00 0.00 1.73
123 124 3.106242 AGCGTGTGTGTGTGAAATAGA 57.894 42.857 0.00 0.00 0.00 1.98
124 125 3.664107 AGCGTGTGTGTGTGAAATAGAT 58.336 40.909 0.00 0.00 0.00 1.98
125 126 3.433274 AGCGTGTGTGTGTGAAATAGATG 59.567 43.478 0.00 0.00 0.00 2.90
126 127 3.424829 GCGTGTGTGTGTGAAATAGATGG 60.425 47.826 0.00 0.00 0.00 3.51
127 128 3.993736 CGTGTGTGTGTGAAATAGATGGA 59.006 43.478 0.00 0.00 0.00 3.41
128 129 4.631377 CGTGTGTGTGTGAAATAGATGGAT 59.369 41.667 0.00 0.00 0.00 3.41
129 130 5.122239 CGTGTGTGTGTGAAATAGATGGATT 59.878 40.000 0.00 0.00 0.00 3.01
130 131 6.312672 CGTGTGTGTGTGAAATAGATGGATTA 59.687 38.462 0.00 0.00 0.00 1.75
131 132 7.011389 CGTGTGTGTGTGAAATAGATGGATTAT 59.989 37.037 0.00 0.00 0.00 1.28
132 133 8.124823 GTGTGTGTGTGAAATAGATGGATTATG 58.875 37.037 0.00 0.00 0.00 1.90
133 134 7.282901 TGTGTGTGTGAAATAGATGGATTATGG 59.717 37.037 0.00 0.00 0.00 2.74
134 135 7.283127 GTGTGTGTGAAATAGATGGATTATGGT 59.717 37.037 0.00 0.00 0.00 3.55
135 136 7.498900 TGTGTGTGAAATAGATGGATTATGGTC 59.501 37.037 0.00 0.00 0.00 4.02
136 137 6.998074 TGTGTGAAATAGATGGATTATGGTCC 59.002 38.462 0.00 0.00 38.81 4.46
137 138 6.431234 GTGTGAAATAGATGGATTATGGTCCC 59.569 42.308 0.00 0.00 37.48 4.46
138 139 5.643777 GTGAAATAGATGGATTATGGTCCCG 59.356 44.000 0.00 0.00 37.48 5.14
139 140 5.309543 TGAAATAGATGGATTATGGTCCCGT 59.690 40.000 0.00 0.00 37.48 5.28
140 141 6.499000 TGAAATAGATGGATTATGGTCCCGTA 59.501 38.462 0.00 0.00 37.48 4.02
141 142 5.934402 ATAGATGGATTATGGTCCCGTAC 57.066 43.478 0.00 0.00 37.48 3.67
152 153 3.121738 GGTCCCGTACCCAATAAGATG 57.878 52.381 0.00 0.00 43.16 2.90
153 154 2.224450 GGTCCCGTACCCAATAAGATGG 60.224 54.545 0.00 0.00 43.16 3.51
154 155 2.701951 GTCCCGTACCCAATAAGATGGA 59.298 50.000 0.00 0.00 43.54 3.41
155 156 3.326880 GTCCCGTACCCAATAAGATGGAT 59.673 47.826 0.00 0.00 43.54 3.41
156 157 4.529377 GTCCCGTACCCAATAAGATGGATA 59.471 45.833 0.00 0.00 43.54 2.59
157 158 5.189145 GTCCCGTACCCAATAAGATGGATAT 59.811 44.000 0.00 0.00 43.54 1.63
158 159 5.188948 TCCCGTACCCAATAAGATGGATATG 59.811 44.000 0.00 0.00 43.54 1.78
159 160 5.045869 CCCGTACCCAATAAGATGGATATGT 60.046 44.000 0.00 0.00 43.54 2.29
160 161 5.874810 CCGTACCCAATAAGATGGATATGTG 59.125 44.000 0.00 0.00 43.54 3.21
161 162 6.464222 CGTACCCAATAAGATGGATATGTGT 58.536 40.000 0.00 0.00 43.54 3.72
162 163 6.368791 CGTACCCAATAAGATGGATATGTGTG 59.631 42.308 0.00 0.00 43.54 3.82
163 164 6.266131 ACCCAATAAGATGGATATGTGTGT 57.734 37.500 0.00 0.00 43.54 3.72
164 165 6.064060 ACCCAATAAGATGGATATGTGTGTG 58.936 40.000 0.00 0.00 43.54 3.82
165 166 6.064060 CCCAATAAGATGGATATGTGTGTGT 58.936 40.000 0.00 0.00 43.54 3.72
166 167 6.016860 CCCAATAAGATGGATATGTGTGTGTG 60.017 42.308 0.00 0.00 43.54 3.82
167 168 6.543465 CCAATAAGATGGATATGTGTGTGTGT 59.457 38.462 0.00 0.00 43.54 3.72
168 169 7.067372 CCAATAAGATGGATATGTGTGTGTGTT 59.933 37.037 0.00 0.00 43.54 3.32
169 170 9.108284 CAATAAGATGGATATGTGTGTGTGTTA 57.892 33.333 0.00 0.00 0.00 2.41
170 171 8.893219 ATAAGATGGATATGTGTGTGTGTTAG 57.107 34.615 0.00 0.00 0.00 2.34
171 172 6.544928 AGATGGATATGTGTGTGTGTTAGA 57.455 37.500 0.00 0.00 0.00 2.10
172 173 6.577103 AGATGGATATGTGTGTGTGTTAGAG 58.423 40.000 0.00 0.00 0.00 2.43
173 174 5.993748 TGGATATGTGTGTGTGTTAGAGA 57.006 39.130 0.00 0.00 0.00 3.10
174 175 5.965922 TGGATATGTGTGTGTGTTAGAGAG 58.034 41.667 0.00 0.00 0.00 3.20
175 176 5.714806 TGGATATGTGTGTGTGTTAGAGAGA 59.285 40.000 0.00 0.00 0.00 3.10
176 177 6.127619 TGGATATGTGTGTGTGTTAGAGAGAG 60.128 42.308 0.00 0.00 0.00 3.20
177 178 4.527509 ATGTGTGTGTGTTAGAGAGAGG 57.472 45.455 0.00 0.00 0.00 3.69
178 179 2.628178 TGTGTGTGTGTTAGAGAGAGGG 59.372 50.000 0.00 0.00 0.00 4.30
179 180 2.891580 GTGTGTGTGTTAGAGAGAGGGA 59.108 50.000 0.00 0.00 0.00 4.20
180 181 3.057174 GTGTGTGTGTTAGAGAGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
181 182 3.181433 TGTGTGTGTTAGAGAGAGGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
182 183 3.442273 GTGTGTGTTAGAGAGAGGGAGAG 59.558 52.174 0.00 0.00 0.00 3.20
183 184 3.020984 GTGTGTTAGAGAGAGGGAGAGG 58.979 54.545 0.00 0.00 0.00 3.69
184 185 2.024846 TGTGTTAGAGAGAGGGAGAGGG 60.025 54.545 0.00 0.00 0.00 4.30
185 186 1.571457 TGTTAGAGAGAGGGAGAGGGG 59.429 57.143 0.00 0.00 0.00 4.79
186 187 1.133294 GTTAGAGAGAGGGAGAGGGGG 60.133 61.905 0.00 0.00 0.00 5.40
187 188 0.350904 TAGAGAGAGGGAGAGGGGGA 59.649 60.000 0.00 0.00 0.00 4.81
188 189 0.998945 AGAGAGAGGGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
189 190 0.996762 GAGAGAGGGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
190 191 0.998945 AGAGAGGGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
191 192 0.996762 GAGAGGGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
192 193 0.998945 AGAGGGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
193 194 0.996762 GAGGGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
194 195 0.998945 AGGGAGAGGGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
195 196 1.293683 GGGAGAGGGGGAGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
196 197 0.106217 GGAGAGGGGGAGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
197 198 0.923358 GAGAGGGGGAGAGAGAGTGA 59.077 60.000 0.00 0.00 0.00 3.41
198 199 0.926293 AGAGGGGGAGAGAGAGTGAG 59.074 60.000 0.00 0.00 0.00 3.51
199 200 0.106217 GAGGGGGAGAGAGAGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
200 201 0.553862 AGGGGGAGAGAGAGTGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
201 202 0.336737 GGGGGAGAGAGAGTGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
202 203 1.687996 GGGGGAGAGAGAGTGAGGAAG 60.688 61.905 0.00 0.00 0.00 3.46
203 204 1.286553 GGGGAGAGAGAGTGAGGAAGA 59.713 57.143 0.00 0.00 0.00 2.87
204 205 2.654863 GGGAGAGAGAGTGAGGAAGAG 58.345 57.143 0.00 0.00 0.00 2.85
205 206 2.654863 GGAGAGAGAGTGAGGAAGAGG 58.345 57.143 0.00 0.00 0.00 3.69
206 207 2.654863 GAGAGAGAGTGAGGAAGAGGG 58.345 57.143 0.00 0.00 0.00 4.30
207 208 2.241176 GAGAGAGAGTGAGGAAGAGGGA 59.759 54.545 0.00 0.00 0.00 4.20
208 209 2.242196 AGAGAGAGTGAGGAAGAGGGAG 59.758 54.545 0.00 0.00 0.00 4.30
209 210 1.287739 AGAGAGTGAGGAAGAGGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
210 211 0.338120 AGAGTGAGGAAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
211 212 0.336737 GAGTGAGGAAGAGGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
212 213 0.338120 AGTGAGGAAGAGGGAGGGAG 59.662 60.000 0.00 0.00 0.00 4.30
213 214 0.041982 GTGAGGAAGAGGGAGGGAGT 59.958 60.000 0.00 0.00 0.00 3.85
214 215 0.041833 TGAGGAAGAGGGAGGGAGTG 59.958 60.000 0.00 0.00 0.00 3.51
215 216 0.041982 GAGGAAGAGGGAGGGAGTGT 59.958 60.000 0.00 0.00 0.00 3.55
216 217 0.252467 AGGAAGAGGGAGGGAGTGTG 60.252 60.000 0.00 0.00 0.00 3.82
217 218 0.545548 GGAAGAGGGAGGGAGTGTGT 60.546 60.000 0.00 0.00 0.00 3.72
218 219 0.610687 GAAGAGGGAGGGAGTGTGTG 59.389 60.000 0.00 0.00 0.00 3.82
219 220 0.104934 AAGAGGGAGGGAGTGTGTGT 60.105 55.000 0.00 0.00 0.00 3.72
220 221 0.833834 AGAGGGAGGGAGTGTGTGTG 60.834 60.000 0.00 0.00 0.00 3.82
221 222 1.074471 AGGGAGGGAGTGTGTGTGT 60.074 57.895 0.00 0.00 0.00 3.72
222 223 1.071471 GGGAGGGAGTGTGTGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
223 224 1.407656 GGGAGGGAGTGTGTGTGTGA 61.408 60.000 0.00 0.00 0.00 3.58
224 225 0.034059 GGAGGGAGTGTGTGTGTGAG 59.966 60.000 0.00 0.00 0.00 3.51
225 226 1.040646 GAGGGAGTGTGTGTGTGAGA 58.959 55.000 0.00 0.00 0.00 3.27
226 227 1.000283 GAGGGAGTGTGTGTGTGAGAG 60.000 57.143 0.00 0.00 0.00 3.20
227 228 0.034059 GGGAGTGTGTGTGTGAGAGG 59.966 60.000 0.00 0.00 0.00 3.69
228 229 1.040646 GGAGTGTGTGTGTGAGAGGA 58.959 55.000 0.00 0.00 0.00 3.71
229 230 1.620819 GGAGTGTGTGTGTGAGAGGAT 59.379 52.381 0.00 0.00 0.00 3.24
230 231 2.037772 GGAGTGTGTGTGTGAGAGGATT 59.962 50.000 0.00 0.00 0.00 3.01
231 232 3.495100 GGAGTGTGTGTGTGAGAGGATTT 60.495 47.826 0.00 0.00 0.00 2.17
232 233 3.470709 AGTGTGTGTGTGAGAGGATTTG 58.529 45.455 0.00 0.00 0.00 2.32
233 234 3.134623 AGTGTGTGTGTGAGAGGATTTGA 59.865 43.478 0.00 0.00 0.00 2.69
234 235 4.067896 GTGTGTGTGTGAGAGGATTTGAT 58.932 43.478 0.00 0.00 0.00 2.57
235 236 4.067192 TGTGTGTGTGAGAGGATTTGATG 58.933 43.478 0.00 0.00 0.00 3.07
236 237 3.438087 GTGTGTGTGAGAGGATTTGATGG 59.562 47.826 0.00 0.00 0.00 3.51
237 238 3.072915 TGTGTGTGAGAGGATTTGATGGT 59.927 43.478 0.00 0.00 0.00 3.55
238 239 4.285775 TGTGTGTGAGAGGATTTGATGGTA 59.714 41.667 0.00 0.00 0.00 3.25
239 240 5.221823 TGTGTGTGAGAGGATTTGATGGTAA 60.222 40.000 0.00 0.00 0.00 2.85
240 241 5.705441 GTGTGTGAGAGGATTTGATGGTAAA 59.295 40.000 0.00 0.00 0.00 2.01
241 242 6.206634 GTGTGTGAGAGGATTTGATGGTAAAA 59.793 38.462 0.00 0.00 0.00 1.52
242 243 6.775142 TGTGTGAGAGGATTTGATGGTAAAAA 59.225 34.615 0.00 0.00 0.00 1.94
258 259 1.314730 AAAAAGGTCGCCAATGTCGT 58.685 45.000 0.00 0.00 0.00 4.34
259 260 2.172851 AAAAGGTCGCCAATGTCGTA 57.827 45.000 0.00 0.00 0.00 3.43
260 261 2.172851 AAAGGTCGCCAATGTCGTAA 57.827 45.000 0.00 0.00 0.00 3.18
261 262 2.396590 AAGGTCGCCAATGTCGTAAT 57.603 45.000 0.00 0.00 0.00 1.89
262 263 3.530265 AAGGTCGCCAATGTCGTAATA 57.470 42.857 0.00 0.00 0.00 0.98
263 264 3.746045 AGGTCGCCAATGTCGTAATAT 57.254 42.857 0.00 0.00 0.00 1.28
264 265 4.067972 AGGTCGCCAATGTCGTAATATT 57.932 40.909 0.00 0.00 0.00 1.28
265 266 3.807622 AGGTCGCCAATGTCGTAATATTG 59.192 43.478 0.00 0.00 34.68 1.90
266 267 3.805422 GGTCGCCAATGTCGTAATATTGA 59.195 43.478 0.00 0.00 36.41 2.57
267 268 4.271533 GGTCGCCAATGTCGTAATATTGAA 59.728 41.667 0.00 0.00 36.41 2.69
268 269 5.195379 GTCGCCAATGTCGTAATATTGAAC 58.805 41.667 0.00 0.00 36.41 3.18
269 270 5.006358 GTCGCCAATGTCGTAATATTGAACT 59.994 40.000 0.00 0.00 36.41 3.01
270 271 5.233476 TCGCCAATGTCGTAATATTGAACTC 59.767 40.000 0.00 0.00 36.41 3.01
271 272 5.234329 CGCCAATGTCGTAATATTGAACTCT 59.766 40.000 0.00 0.00 36.41 3.24
272 273 6.238103 CGCCAATGTCGTAATATTGAACTCTT 60.238 38.462 0.00 0.00 36.41 2.85
273 274 7.472543 GCCAATGTCGTAATATTGAACTCTTT 58.527 34.615 0.00 0.00 36.41 2.52
274 275 8.609176 GCCAATGTCGTAATATTGAACTCTTTA 58.391 33.333 0.00 0.00 36.41 1.85
288 289 5.977489 AACTCTTTAAGTTAATGTGGCCC 57.023 39.130 0.00 0.00 46.55 5.80
289 290 4.007659 ACTCTTTAAGTTAATGTGGCCCG 58.992 43.478 0.00 0.00 33.03 6.13
290 291 4.007659 CTCTTTAAGTTAATGTGGCCCGT 58.992 43.478 0.00 0.00 0.00 5.28
291 292 4.400120 TCTTTAAGTTAATGTGGCCCGTT 58.600 39.130 0.00 1.76 0.00 4.44
292 293 4.216687 TCTTTAAGTTAATGTGGCCCGTTG 59.783 41.667 0.00 0.00 0.00 4.10
293 294 0.601057 AAGTTAATGTGGCCCGTTGC 59.399 50.000 0.00 0.00 40.16 4.17
294 295 0.538516 AGTTAATGTGGCCCGTTGCA 60.539 50.000 0.00 0.00 43.89 4.08
295 296 0.315568 GTTAATGTGGCCCGTTGCAA 59.684 50.000 0.00 0.00 43.89 4.08
296 297 0.315568 TTAATGTGGCCCGTTGCAAC 59.684 50.000 19.89 19.89 44.85 4.17
314 315 3.782042 GCACGGGCGTTCTTCTAG 58.218 61.111 0.00 0.00 0.00 2.43
328 329 7.167801 GGCGTTCTTCTAGTATGTTTAGACATC 59.832 40.741 1.50 0.00 42.83 3.06
390 391 7.327275 GTCTGGCGAACTATCTGTTATCTTATG 59.673 40.741 0.00 0.00 39.30 1.90
544 554 9.643693 AACAAAAATAATGTGGCTCTTGATAAG 57.356 29.630 0.00 0.00 0.00 1.73
638 715 1.930908 GCCACTGCTTGTCTCCATGC 61.931 60.000 0.00 0.00 41.00 4.06
669 786 4.039004 TCAACTGTTTCAAATCCCCATGTG 59.961 41.667 0.00 0.00 0.00 3.21
683 800 3.502211 CCCCATGTGTACAACAGAACTTC 59.498 47.826 0.00 0.00 43.64 3.01
687 804 6.239008 CCCATGTGTACAACAGAACTTCAAAT 60.239 38.462 0.00 0.00 43.64 2.32
688 805 7.202526 CCATGTGTACAACAGAACTTCAAATT 58.797 34.615 0.00 0.00 43.64 1.82
691 808 6.375736 TGTGTACAACAGAACTTCAAATTCCA 59.624 34.615 0.00 0.00 33.78 3.53
692 809 7.068103 TGTGTACAACAGAACTTCAAATTCCAT 59.932 33.333 0.00 0.00 33.78 3.41
693 810 7.379529 GTGTACAACAGAACTTCAAATTCCATG 59.620 37.037 0.00 0.00 0.00 3.66
695 812 5.363580 ACAACAGAACTTCAAATTCCATGGT 59.636 36.000 12.58 0.00 0.00 3.55
696 813 5.458041 ACAGAACTTCAAATTCCATGGTG 57.542 39.130 12.58 2.27 0.00 4.17
697 814 4.281688 ACAGAACTTCAAATTCCATGGTGG 59.718 41.667 12.58 0.00 39.43 4.61
698 815 3.834231 AGAACTTCAAATTCCATGGTGGG 59.166 43.478 12.58 2.54 38.32 4.61
699 816 1.901833 ACTTCAAATTCCATGGTGGGC 59.098 47.619 12.58 0.00 38.32 5.36
700 817 1.207811 CTTCAAATTCCATGGTGGGCC 59.792 52.381 12.58 0.00 38.32 5.80
701 818 0.617249 TCAAATTCCATGGTGGGCCC 60.617 55.000 17.59 17.59 38.32 5.80
709 826 2.203625 TGGTGGGCCCAAGCTTTC 60.204 61.111 30.64 13.43 41.50 2.62
710 827 2.203625 GGTGGGCCCAAGCTTTCA 60.204 61.111 30.64 0.00 39.73 2.69
711 828 2.574018 GGTGGGCCCAAGCTTTCAC 61.574 63.158 30.64 11.67 39.73 3.18
712 829 1.832167 GTGGGCCCAAGCTTTCACA 60.832 57.895 30.64 0.00 39.73 3.58
713 830 1.075674 TGGGCCCAAGCTTTCACAA 60.076 52.632 26.33 0.00 39.73 3.33
714 831 0.689080 TGGGCCCAAGCTTTCACAAA 60.689 50.000 26.33 0.00 39.73 2.83
715 832 0.033920 GGGCCCAAGCTTTCACAAAG 59.966 55.000 19.95 0.00 41.46 2.77
716 833 0.752658 GGCCCAAGCTTTCACAAAGT 59.247 50.000 0.00 0.00 40.64 2.66
717 834 1.138859 GGCCCAAGCTTTCACAAAGTT 59.861 47.619 0.00 0.00 40.64 2.66
718 835 2.419990 GGCCCAAGCTTTCACAAAGTTT 60.420 45.455 0.00 0.00 41.72 2.66
722 839 3.893326 AAGCTTTCACAAAGTTTGCCT 57.107 38.095 15.59 0.00 39.90 4.75
723 840 3.443099 AGCTTTCACAAAGTTTGCCTC 57.557 42.857 15.59 0.01 40.64 4.70
724 841 2.101415 AGCTTTCACAAAGTTTGCCTCC 59.899 45.455 15.59 0.22 40.64 4.30
725 842 2.159114 GCTTTCACAAAGTTTGCCTCCA 60.159 45.455 15.59 0.00 40.64 3.86
726 843 3.493176 GCTTTCACAAAGTTTGCCTCCAT 60.493 43.478 15.59 0.00 40.64 3.41
727 844 3.731652 TTCACAAAGTTTGCCTCCATG 57.268 42.857 15.59 5.50 0.00 3.66
728 845 2.665165 TCACAAAGTTTGCCTCCATGT 58.335 42.857 15.59 0.00 0.00 3.21
729 846 3.030291 TCACAAAGTTTGCCTCCATGTT 58.970 40.909 15.59 0.00 0.00 2.71
730 847 3.068024 TCACAAAGTTTGCCTCCATGTTC 59.932 43.478 15.59 0.00 0.00 3.18
731 848 3.068590 CACAAAGTTTGCCTCCATGTTCT 59.931 43.478 15.59 0.00 0.00 3.01
732 849 3.319122 ACAAAGTTTGCCTCCATGTTCTC 59.681 43.478 15.59 0.00 0.00 2.87
733 850 2.957402 AGTTTGCCTCCATGTTCTCA 57.043 45.000 0.00 0.00 0.00 3.27
734 851 3.228188 AGTTTGCCTCCATGTTCTCAA 57.772 42.857 0.00 0.00 0.00 3.02
735 852 2.887152 AGTTTGCCTCCATGTTCTCAAC 59.113 45.455 0.00 0.00 0.00 3.18
736 853 2.887152 GTTTGCCTCCATGTTCTCAACT 59.113 45.455 0.00 0.00 0.00 3.16
737 854 2.479566 TGCCTCCATGTTCTCAACTC 57.520 50.000 0.00 0.00 0.00 3.01
738 855 1.699083 TGCCTCCATGTTCTCAACTCA 59.301 47.619 0.00 0.00 0.00 3.41
739 856 2.106338 TGCCTCCATGTTCTCAACTCAA 59.894 45.455 0.00 0.00 0.00 3.02
740 857 2.485814 GCCTCCATGTTCTCAACTCAAC 59.514 50.000 0.00 0.00 0.00 3.18
741 858 3.808618 GCCTCCATGTTCTCAACTCAACT 60.809 47.826 0.00 0.00 0.00 3.16
742 859 3.750130 CCTCCATGTTCTCAACTCAACTG 59.250 47.826 0.00 0.00 0.00 3.16
743 860 4.384056 CTCCATGTTCTCAACTCAACTGT 58.616 43.478 0.00 0.00 0.00 3.55
744 861 4.780815 TCCATGTTCTCAACTCAACTGTT 58.219 39.130 0.00 0.00 0.00 3.16
745 862 5.192927 TCCATGTTCTCAACTCAACTGTTT 58.807 37.500 0.00 0.00 0.00 2.83
746 863 5.296780 TCCATGTTCTCAACTCAACTGTTTC 59.703 40.000 0.00 0.00 0.00 2.78
747 864 5.066375 CCATGTTCTCAACTCAACTGTTTCA 59.934 40.000 0.00 0.00 0.00 2.69
748 865 6.404623 CCATGTTCTCAACTCAACTGTTTCAA 60.405 38.462 0.00 0.00 0.00 2.69
749 866 6.567687 TGTTCTCAACTCAACTGTTTCAAA 57.432 33.333 0.00 0.00 0.00 2.69
750 867 7.156876 TGTTCTCAACTCAACTGTTTCAAAT 57.843 32.000 0.00 0.00 0.00 2.32
751 868 7.028962 TGTTCTCAACTCAACTGTTTCAAATG 58.971 34.615 0.00 0.00 0.00 2.32
752 869 6.757897 TCTCAACTCAACTGTTTCAAATGT 57.242 33.333 0.00 0.00 0.00 2.71
753 870 6.785191 TCTCAACTCAACTGTTTCAAATGTC 58.215 36.000 0.00 0.00 0.00 3.06
754 871 6.599244 TCTCAACTCAACTGTTTCAAATGTCT 59.401 34.615 0.00 0.00 0.00 3.41
755 872 7.768582 TCTCAACTCAACTGTTTCAAATGTCTA 59.231 33.333 0.00 0.00 0.00 2.59
756 873 7.693952 TCAACTCAACTGTTTCAAATGTCTAC 58.306 34.615 0.00 0.00 0.00 2.59
759 876 7.472543 ACTCAACTGTTTCAAATGTCTACAAC 58.527 34.615 0.00 0.00 0.00 3.32
764 882 8.225603 ACTGTTTCAAATGTCTACAACAGAAT 57.774 30.769 14.99 0.00 42.41 2.40
790 910 8.617290 TTTAAAGGAATTTCACCTACTCACTC 57.383 34.615 0.00 0.00 36.67 3.51
943 1069 3.987404 CCAGGTGGTTGCTAGTGC 58.013 61.111 0.00 0.00 40.20 4.40
973 1104 2.438021 CCAGCCACTACTATAAAGCCCA 59.562 50.000 0.00 0.00 0.00 5.36
991 1122 0.169672 CAAGCTTGGCGGATCACTTG 59.830 55.000 19.14 0.00 0.00 3.16
997 1128 2.100631 GGCGGATCACTTGGACACG 61.101 63.158 0.00 0.00 0.00 4.49
1004 1135 0.249447 TCACTTGGACACGCACTCAG 60.249 55.000 0.00 0.00 0.00 3.35
1035 1171 3.678072 TCACAGCAACTAAGTTCATACGC 59.322 43.478 0.00 0.00 0.00 4.42
1060 1208 1.611977 ACGTGCAGCAAGTAGTAGTCA 59.388 47.619 12.76 0.00 0.00 3.41
1266 1425 6.744112 AGAATCTGTACTGCTACTGCTATTC 58.256 40.000 0.00 0.00 40.48 1.75
1576 1753 0.888619 CGTCTTCAGCACCTACTCCA 59.111 55.000 0.00 0.00 0.00 3.86
1804 1981 3.047280 GCAACATCGTCGGCCACA 61.047 61.111 2.24 0.00 0.00 4.17
2091 2304 0.468771 GCTCTGGGAATGGGAATGGG 60.469 60.000 0.00 0.00 0.00 4.00
2095 2308 2.091166 TCTGGGAATGGGAATGGGAATG 60.091 50.000 0.00 0.00 0.00 2.67
2096 2309 1.062275 TGGGAATGGGAATGGGAATGG 60.062 52.381 0.00 0.00 0.00 3.16
2097 2310 1.720781 GGAATGGGAATGGGAATGGG 58.279 55.000 0.00 0.00 0.00 4.00
2098 2311 1.220236 GGAATGGGAATGGGAATGGGA 59.780 52.381 0.00 0.00 0.00 4.37
2099 2312 2.360209 GGAATGGGAATGGGAATGGGAA 60.360 50.000 0.00 0.00 0.00 3.97
2100 2313 3.590714 GAATGGGAATGGGAATGGGAAT 58.409 45.455 0.00 0.00 0.00 3.01
2101 2314 2.475339 TGGGAATGGGAATGGGAATG 57.525 50.000 0.00 0.00 0.00 2.67
2102 2315 1.051008 GGGAATGGGAATGGGAATGC 58.949 55.000 0.00 0.00 0.00 3.56
2323 2537 3.423154 GCTGTTGGCCTTCGGACG 61.423 66.667 3.32 0.00 29.56 4.79
2374 2610 0.909133 TGCCCACACTAGCCAGATGA 60.909 55.000 0.00 0.00 0.00 2.92
2384 2620 2.881111 AGCCAGATGATCCATCCATG 57.119 50.000 3.55 0.00 41.36 3.66
2421 2659 5.192522 CCATTCATCCCAGGGCTACTTATAT 59.807 44.000 0.00 0.00 0.00 0.86
2422 2660 6.386927 CCATTCATCCCAGGGCTACTTATATA 59.613 42.308 0.00 0.00 0.00 0.86
2423 2661 7.072961 CCATTCATCCCAGGGCTACTTATATAT 59.927 40.741 0.00 0.00 0.00 0.86
2424 2662 9.159254 CATTCATCCCAGGGCTACTTATATATA 57.841 37.037 0.00 0.00 0.00 0.86
2425 2663 8.548880 TTCATCCCAGGGCTACTTATATATAC 57.451 38.462 0.00 0.00 0.00 1.47
2456 2694 2.357327 ATATGTGTGTACGCGTGTGT 57.643 45.000 24.59 0.00 0.00 3.72
2506 2747 1.813513 TAGCAGTCAAAGAAGGCAGC 58.186 50.000 0.00 0.00 0.00 5.25
2566 2807 0.964358 AGCTTTCAGTCCAGCCATGC 60.964 55.000 0.00 0.00 36.62 4.06
2600 2841 8.866970 ACTAGCTACTCCTAATTATGTACCTC 57.133 38.462 0.00 0.00 0.00 3.85
2687 2928 6.721318 ACTCCAAATATTTTCTAGCAGTCCA 58.279 36.000 0.00 0.00 0.00 4.02
2733 2974 6.152831 ACCTGTGTTAGAATAAATTTGAGGCC 59.847 38.462 0.00 0.00 0.00 5.19
2734 2975 6.152661 CCTGTGTTAGAATAAATTTGAGGCCA 59.847 38.462 5.01 0.00 0.00 5.36
2735 2976 6.919721 TGTGTTAGAATAAATTTGAGGCCAC 58.080 36.000 5.01 0.00 0.00 5.01
2737 2978 5.124776 TGTTAGAATAAATTTGAGGCCACCG 59.875 40.000 5.01 0.00 0.00 4.94
2738 2979 3.697166 AGAATAAATTTGAGGCCACCGT 58.303 40.909 5.01 0.00 0.00 4.83
2739 2980 3.694566 AGAATAAATTTGAGGCCACCGTC 59.305 43.478 5.01 0.00 0.00 4.79
2740 2981 2.871096 TAAATTTGAGGCCACCGTCT 57.129 45.000 5.01 0.00 0.00 4.18
2744 2987 0.250295 TTTGAGGCCACCGTCTTCTG 60.250 55.000 5.01 0.00 0.00 3.02
2776 3020 1.201998 GCAATCACATGAGCACGACAG 60.202 52.381 0.00 0.00 0.00 3.51
2791 3035 3.513462 CGACAGCGTGATTTGTTAACA 57.487 42.857 3.59 3.59 0.00 2.41
2848 3096 3.564218 GGCGCTCCTCCCCATGAT 61.564 66.667 7.64 0.00 0.00 2.45
2856 3104 1.078823 TCCTCCCCATGATACCGCTAT 59.921 52.381 0.00 0.00 0.00 2.97
2865 3113 3.409851 TGATACCGCTATAATACCGCG 57.590 47.619 0.00 0.00 45.86 6.46
2939 3188 5.301805 GGTGCTATTATGTTGGCATAGGTTT 59.698 40.000 0.00 0.00 38.64 3.27
2965 3214 3.365064 CGTGTGTCTACCCTCGCTATATG 60.365 52.174 0.00 0.00 0.00 1.78
3044 3293 5.869579 ACACAATACAACTCAGAGTCCAAT 58.130 37.500 2.72 0.00 0.00 3.16
3140 3390 2.022764 ATTCATCCATGCGTCGAACA 57.977 45.000 0.00 0.00 0.00 3.18
3198 3449 0.820871 CTGCTACTCCCAGACTCCAC 59.179 60.000 0.00 0.00 32.03 4.02
3225 3476 0.321653 CACCTGCAACTGTAGTCCCC 60.322 60.000 0.00 0.00 0.00 4.81
3301 3553 0.181587 TTGTGCTCCCAACTTTCGGA 59.818 50.000 0.00 0.00 0.00 4.55
3328 3580 0.464554 TTCAACGCCATCACACACCA 60.465 50.000 0.00 0.00 0.00 4.17
3375 3631 1.665679 CTCACATATTGGACGCCACAC 59.334 52.381 0.00 0.00 30.78 3.82
3447 3703 7.340743 TGTCTAAAACTTGAAGGAATTTCACCA 59.659 33.333 0.00 0.00 45.22 4.17
3455 3711 3.372440 AGGAATTTCACCATCACCCTC 57.628 47.619 0.00 0.00 0.00 4.30
3499 3757 4.144297 CAGTTGTCTCATCCTTTTTCCCA 58.856 43.478 0.00 0.00 0.00 4.37
3506 3768 6.012508 TGTCTCATCCTTTTTCCCAGATAGTT 60.013 38.462 0.00 0.00 0.00 2.24
3535 3799 4.119556 TGTCCCATAGCTATAGCACTCT 57.880 45.455 26.07 8.41 45.16 3.24
3557 3821 3.327757 TGCCTCCTTCTGTACTTGTCATT 59.672 43.478 0.00 0.00 0.00 2.57
3566 3830 4.814234 TCTGTACTTGTCATTCGCACTTTT 59.186 37.500 0.00 0.00 0.00 2.27
3608 3872 4.021368 ACAGAATATACGGCCATGTACTCC 60.021 45.833 2.24 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.931005 GCTCCAAGAATACGCGGAAG 59.069 55.000 12.47 0.00 0.00 3.46
4 5 0.460284 ACAGCTCCAAGAATACGCGG 60.460 55.000 12.47 0.00 0.00 6.46
5 6 0.647410 CACAGCTCCAAGAATACGCG 59.353 55.000 3.53 3.53 0.00 6.01
6 7 1.009829 CCACAGCTCCAAGAATACGC 58.990 55.000 0.00 0.00 0.00 4.42
7 8 1.009829 GCCACAGCTCCAAGAATACG 58.990 55.000 0.00 0.00 35.50 3.06
19 20 0.179163 GTAAATCGGCAAGCCACAGC 60.179 55.000 12.19 0.00 40.32 4.40
20 21 1.164411 TGTAAATCGGCAAGCCACAG 58.836 50.000 12.19 0.00 35.37 3.66
21 22 1.472082 CATGTAAATCGGCAAGCCACA 59.528 47.619 12.19 7.73 35.37 4.17
22 23 1.742831 TCATGTAAATCGGCAAGCCAC 59.257 47.619 12.19 1.74 35.37 5.01
23 24 2.121291 TCATGTAAATCGGCAAGCCA 57.879 45.000 12.19 0.00 35.37 4.75
24 25 3.502191 TTTCATGTAAATCGGCAAGCC 57.498 42.857 0.00 0.00 0.00 4.35
25 26 7.698836 ATTAATTTCATGTAAATCGGCAAGC 57.301 32.000 0.00 0.00 36.76 4.01
26 27 8.755018 GGAATTAATTTCATGTAAATCGGCAAG 58.245 33.333 1.43 0.00 36.76 4.01
27 28 8.474025 AGGAATTAATTTCATGTAAATCGGCAA 58.526 29.630 9.19 0.00 36.76 4.52
28 29 8.006298 AGGAATTAATTTCATGTAAATCGGCA 57.994 30.769 9.19 0.00 36.76 5.69
29 30 8.871686 AAGGAATTAATTTCATGTAAATCGGC 57.128 30.769 9.19 0.00 36.76 5.54
37 38 8.526147 CCAGAACTGAAGGAATTAATTTCATGT 58.474 33.333 9.19 4.22 35.94 3.21
38 39 8.526147 ACCAGAACTGAAGGAATTAATTTCATG 58.474 33.333 9.19 2.11 35.94 3.07
39 40 8.526147 CACCAGAACTGAAGGAATTAATTTCAT 58.474 33.333 9.19 0.00 35.94 2.57
40 41 7.039784 CCACCAGAACTGAAGGAATTAATTTCA 60.040 37.037 9.19 5.25 35.94 2.69
41 42 7.315890 CCACCAGAACTGAAGGAATTAATTTC 58.684 38.462 1.43 0.00 0.00 2.17
42 43 6.295292 GCCACCAGAACTGAAGGAATTAATTT 60.295 38.462 1.43 0.00 0.00 1.82
43 44 5.185828 GCCACCAGAACTGAAGGAATTAATT 59.814 40.000 0.00 0.00 0.00 1.40
44 45 4.706962 GCCACCAGAACTGAAGGAATTAAT 59.293 41.667 13.61 0.00 0.00 1.40
45 46 4.079253 GCCACCAGAACTGAAGGAATTAA 58.921 43.478 13.61 0.00 0.00 1.40
46 47 3.073798 TGCCACCAGAACTGAAGGAATTA 59.926 43.478 13.61 0.00 0.00 1.40
47 48 2.158475 TGCCACCAGAACTGAAGGAATT 60.158 45.455 13.61 0.00 0.00 2.17
48 49 1.425066 TGCCACCAGAACTGAAGGAAT 59.575 47.619 13.61 0.00 0.00 3.01
49 50 0.843309 TGCCACCAGAACTGAAGGAA 59.157 50.000 13.61 3.77 0.00 3.36
50 51 0.843309 TTGCCACCAGAACTGAAGGA 59.157 50.000 13.61 0.00 0.00 3.36
51 52 1.691196 TTTGCCACCAGAACTGAAGG 58.309 50.000 3.19 5.89 0.00 3.46
52 53 6.757897 TTATATTTGCCACCAGAACTGAAG 57.242 37.500 3.19 0.00 0.00 3.02
53 54 7.831690 TGTATTATATTTGCCACCAGAACTGAA 59.168 33.333 3.19 0.00 0.00 3.02
54 55 7.282224 GTGTATTATATTTGCCACCAGAACTGA 59.718 37.037 3.19 0.00 0.00 3.41
55 56 7.066887 TGTGTATTATATTTGCCACCAGAACTG 59.933 37.037 0.00 0.00 0.00 3.16
56 57 7.116075 TGTGTATTATATTTGCCACCAGAACT 58.884 34.615 0.00 0.00 0.00 3.01
57 58 7.328277 TGTGTATTATATTTGCCACCAGAAC 57.672 36.000 0.00 0.00 0.00 3.01
58 59 9.634021 TTATGTGTATTATATTTGCCACCAGAA 57.366 29.630 0.00 0.00 0.00 3.02
59 60 9.806448 ATTATGTGTATTATATTTGCCACCAGA 57.194 29.630 0.00 0.00 0.00 3.86
61 62 9.019656 GGATTATGTGTATTATATTTGCCACCA 57.980 33.333 0.00 0.00 0.00 4.17
62 63 9.019656 TGGATTATGTGTATTATATTTGCCACC 57.980 33.333 0.00 0.00 0.00 4.61
76 77 9.791801 AGTGCATAACAATATGGATTATGTGTA 57.208 29.630 12.17 2.42 41.20 2.90
77 78 8.696043 AGTGCATAACAATATGGATTATGTGT 57.304 30.769 12.17 0.00 41.20 3.72
79 80 8.950210 GCTAGTGCATAACAATATGGATTATGT 58.050 33.333 12.17 0.00 41.20 2.29
80 81 8.118607 CGCTAGTGCATAACAATATGGATTATG 58.881 37.037 0.00 8.50 41.20 1.90
81 82 7.824289 ACGCTAGTGCATAACAATATGGATTAT 59.176 33.333 2.40 0.00 41.20 1.28
82 83 7.117667 CACGCTAGTGCATAACAATATGGATTA 59.882 37.037 2.40 0.00 41.20 1.75
83 84 5.997746 ACGCTAGTGCATAACAATATGGATT 59.002 36.000 2.40 0.00 41.20 3.01
84 85 5.409520 CACGCTAGTGCATAACAATATGGAT 59.590 40.000 2.40 0.00 41.20 3.41
85 86 4.749598 CACGCTAGTGCATAACAATATGGA 59.250 41.667 2.40 0.00 41.94 3.41
86 87 5.022335 CACGCTAGTGCATAACAATATGG 57.978 43.478 2.40 0.00 41.94 2.74
100 101 2.303163 TTTCACACACACACGCTAGT 57.697 45.000 0.00 0.00 0.00 2.57
101 102 4.234574 TCTATTTCACACACACACGCTAG 58.765 43.478 0.00 0.00 0.00 3.42
102 103 4.245845 TCTATTTCACACACACACGCTA 57.754 40.909 0.00 0.00 0.00 4.26
103 104 3.106242 TCTATTTCACACACACACGCT 57.894 42.857 0.00 0.00 0.00 5.07
104 105 3.424829 CCATCTATTTCACACACACACGC 60.425 47.826 0.00 0.00 0.00 5.34
105 106 3.993736 TCCATCTATTTCACACACACACG 59.006 43.478 0.00 0.00 0.00 4.49
106 107 6.500684 AATCCATCTATTTCACACACACAC 57.499 37.500 0.00 0.00 0.00 3.82
107 108 7.282901 CCATAATCCATCTATTTCACACACACA 59.717 37.037 0.00 0.00 0.00 3.72
108 109 7.283127 ACCATAATCCATCTATTTCACACACAC 59.717 37.037 0.00 0.00 0.00 3.82
109 110 7.345691 ACCATAATCCATCTATTTCACACACA 58.654 34.615 0.00 0.00 0.00 3.72
110 111 7.041098 GGACCATAATCCATCTATTTCACACAC 60.041 40.741 0.00 0.00 38.77 3.82
111 112 6.998074 GGACCATAATCCATCTATTTCACACA 59.002 38.462 0.00 0.00 38.77 3.72
112 113 6.431234 GGGACCATAATCCATCTATTTCACAC 59.569 42.308 0.00 0.00 40.96 3.82
113 114 6.542821 GGGACCATAATCCATCTATTTCACA 58.457 40.000 0.00 0.00 40.96 3.58
114 115 5.643777 CGGGACCATAATCCATCTATTTCAC 59.356 44.000 0.00 0.00 40.96 3.18
115 116 5.309543 ACGGGACCATAATCCATCTATTTCA 59.690 40.000 0.00 0.00 40.96 2.69
116 117 5.805728 ACGGGACCATAATCCATCTATTTC 58.194 41.667 0.00 0.00 40.96 2.17
117 118 5.843019 ACGGGACCATAATCCATCTATTT 57.157 39.130 0.00 0.00 40.96 1.40
118 119 6.295719 GTACGGGACCATAATCCATCTATT 57.704 41.667 0.00 0.00 40.96 1.73
119 120 5.934402 GTACGGGACCATAATCCATCTAT 57.066 43.478 0.00 0.00 40.96 1.98
133 134 2.701951 TCCATCTTATTGGGTACGGGAC 59.298 50.000 0.00 0.00 37.37 4.46
134 135 3.049108 TCCATCTTATTGGGTACGGGA 57.951 47.619 0.00 0.00 37.37 5.14
135 136 5.045869 ACATATCCATCTTATTGGGTACGGG 60.046 44.000 0.00 0.00 35.20 5.28
136 137 5.874810 CACATATCCATCTTATTGGGTACGG 59.125 44.000 0.00 0.00 35.20 4.02
137 138 6.368791 CACACATATCCATCTTATTGGGTACG 59.631 42.308 0.00 0.00 35.20 3.67
138 139 7.173218 CACACACATATCCATCTTATTGGGTAC 59.827 40.741 0.00 0.00 35.20 3.34
139 140 7.147391 ACACACACATATCCATCTTATTGGGTA 60.147 37.037 0.00 0.00 36.79 3.69
140 141 6.064060 CACACACATATCCATCTTATTGGGT 58.936 40.000 0.00 0.00 37.37 4.51
141 142 6.016860 CACACACACATATCCATCTTATTGGG 60.017 42.308 0.00 0.00 37.37 4.12
142 143 6.543465 ACACACACACATATCCATCTTATTGG 59.457 38.462 0.00 0.00 38.18 3.16
143 144 7.558161 ACACACACACATATCCATCTTATTG 57.442 36.000 0.00 0.00 0.00 1.90
144 145 9.330063 CTAACACACACACATATCCATCTTATT 57.670 33.333 0.00 0.00 0.00 1.40
145 146 8.704668 TCTAACACACACACATATCCATCTTAT 58.295 33.333 0.00 0.00 0.00 1.73
146 147 8.073467 TCTAACACACACACATATCCATCTTA 57.927 34.615 0.00 0.00 0.00 2.10
147 148 6.946340 TCTAACACACACACATATCCATCTT 58.054 36.000 0.00 0.00 0.00 2.40
148 149 6.381133 TCTCTAACACACACACATATCCATCT 59.619 38.462 0.00 0.00 0.00 2.90
149 150 6.573434 TCTCTAACACACACACATATCCATC 58.427 40.000 0.00 0.00 0.00 3.51
150 151 6.381133 TCTCTCTAACACACACACATATCCAT 59.619 38.462 0.00 0.00 0.00 3.41
151 152 5.714806 TCTCTCTAACACACACACATATCCA 59.285 40.000 0.00 0.00 0.00 3.41
152 153 6.208988 TCTCTCTAACACACACACATATCC 57.791 41.667 0.00 0.00 0.00 2.59
153 154 6.269315 CCTCTCTCTAACACACACACATATC 58.731 44.000 0.00 0.00 0.00 1.63
154 155 5.127845 CCCTCTCTCTAACACACACACATAT 59.872 44.000 0.00 0.00 0.00 1.78
155 156 4.462834 CCCTCTCTCTAACACACACACATA 59.537 45.833 0.00 0.00 0.00 2.29
156 157 3.259374 CCCTCTCTCTAACACACACACAT 59.741 47.826 0.00 0.00 0.00 3.21
157 158 2.628178 CCCTCTCTCTAACACACACACA 59.372 50.000 0.00 0.00 0.00 3.72
158 159 2.891580 TCCCTCTCTCTAACACACACAC 59.108 50.000 0.00 0.00 0.00 3.82
159 160 3.157881 CTCCCTCTCTCTAACACACACA 58.842 50.000 0.00 0.00 0.00 3.72
160 161 3.422796 TCTCCCTCTCTCTAACACACAC 58.577 50.000 0.00 0.00 0.00 3.82
161 162 3.562393 CCTCTCCCTCTCTCTAACACACA 60.562 52.174 0.00 0.00 0.00 3.72
162 163 3.020984 CCTCTCCCTCTCTCTAACACAC 58.979 54.545 0.00 0.00 0.00 3.82
163 164 2.024846 CCCTCTCCCTCTCTCTAACACA 60.025 54.545 0.00 0.00 0.00 3.72
164 165 2.661718 CCCTCTCCCTCTCTCTAACAC 58.338 57.143 0.00 0.00 0.00 3.32
165 166 1.571457 CCCCTCTCCCTCTCTCTAACA 59.429 57.143 0.00 0.00 0.00 2.41
166 167 1.133294 CCCCCTCTCCCTCTCTCTAAC 60.133 61.905 0.00 0.00 0.00 2.34
167 168 1.236708 CCCCCTCTCCCTCTCTCTAA 58.763 60.000 0.00 0.00 0.00 2.10
168 169 0.350904 TCCCCCTCTCCCTCTCTCTA 59.649 60.000 0.00 0.00 0.00 2.43
169 170 0.998945 CTCCCCCTCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
170 171 0.996762 TCTCCCCCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
171 172 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
172 173 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
173 174 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
174 175 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
175 176 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
176 177 1.293683 ACTCTCTCTCCCCCTCTCCC 61.294 65.000 0.00 0.00 0.00 4.30
177 178 0.106217 CACTCTCTCTCCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
178 179 0.923358 TCACTCTCTCTCCCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
179 180 0.926293 CTCACTCTCTCTCCCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
180 181 0.106217 CCTCACTCTCTCTCCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
181 182 0.553862 TCCTCACTCTCTCTCCCCCT 60.554 60.000 0.00 0.00 0.00 4.79
182 183 0.336737 TTCCTCACTCTCTCTCCCCC 59.663 60.000 0.00 0.00 0.00 5.40
183 184 1.286553 TCTTCCTCACTCTCTCTCCCC 59.713 57.143 0.00 0.00 0.00 4.81
184 185 2.654863 CTCTTCCTCACTCTCTCTCCC 58.345 57.143 0.00 0.00 0.00 4.30
185 186 2.654863 CCTCTTCCTCACTCTCTCTCC 58.345 57.143 0.00 0.00 0.00 3.71
186 187 2.241176 TCCCTCTTCCTCACTCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
187 188 2.242196 CTCCCTCTTCCTCACTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
188 189 2.654863 CTCCCTCTTCCTCACTCTCTC 58.345 57.143 0.00 0.00 0.00 3.20
189 190 1.287739 CCTCCCTCTTCCTCACTCTCT 59.712 57.143 0.00 0.00 0.00 3.10
190 191 1.687996 CCCTCCCTCTTCCTCACTCTC 60.688 61.905 0.00 0.00 0.00 3.20
191 192 0.338120 CCCTCCCTCTTCCTCACTCT 59.662 60.000 0.00 0.00 0.00 3.24
192 193 0.336737 TCCCTCCCTCTTCCTCACTC 59.663 60.000 0.00 0.00 0.00 3.51
193 194 0.338120 CTCCCTCCCTCTTCCTCACT 59.662 60.000 0.00 0.00 0.00 3.41
194 195 0.041982 ACTCCCTCCCTCTTCCTCAC 59.958 60.000 0.00 0.00 0.00 3.51
195 196 0.041833 CACTCCCTCCCTCTTCCTCA 59.958 60.000 0.00 0.00 0.00 3.86
196 197 0.041982 ACACTCCCTCCCTCTTCCTC 59.958 60.000 0.00 0.00 0.00 3.71
197 198 0.252467 CACACTCCCTCCCTCTTCCT 60.252 60.000 0.00 0.00 0.00 3.36
198 199 0.545548 ACACACTCCCTCCCTCTTCC 60.546 60.000 0.00 0.00 0.00 3.46
199 200 0.610687 CACACACTCCCTCCCTCTTC 59.389 60.000 0.00 0.00 0.00 2.87
200 201 0.104934 ACACACACTCCCTCCCTCTT 60.105 55.000 0.00 0.00 0.00 2.85
201 202 0.833834 CACACACACTCCCTCCCTCT 60.834 60.000 0.00 0.00 0.00 3.69
202 203 1.122019 ACACACACACTCCCTCCCTC 61.122 60.000 0.00 0.00 0.00 4.30
203 204 1.074471 ACACACACACTCCCTCCCT 60.074 57.895 0.00 0.00 0.00 4.20
204 205 1.071471 CACACACACACTCCCTCCC 59.929 63.158 0.00 0.00 0.00 4.30
205 206 0.034059 CTCACACACACACTCCCTCC 59.966 60.000 0.00 0.00 0.00 4.30
206 207 1.000283 CTCTCACACACACACTCCCTC 60.000 57.143 0.00 0.00 0.00 4.30
207 208 1.043816 CTCTCACACACACACTCCCT 58.956 55.000 0.00 0.00 0.00 4.20
208 209 0.034059 CCTCTCACACACACACTCCC 59.966 60.000 0.00 0.00 0.00 4.30
209 210 1.040646 TCCTCTCACACACACACTCC 58.959 55.000 0.00 0.00 0.00 3.85
210 211 3.393089 AATCCTCTCACACACACACTC 57.607 47.619 0.00 0.00 0.00 3.51
211 212 3.134623 TCAAATCCTCTCACACACACACT 59.865 43.478 0.00 0.00 0.00 3.55
212 213 3.466836 TCAAATCCTCTCACACACACAC 58.533 45.455 0.00 0.00 0.00 3.82
213 214 3.836365 TCAAATCCTCTCACACACACA 57.164 42.857 0.00 0.00 0.00 3.72
214 215 3.438087 CCATCAAATCCTCTCACACACAC 59.562 47.826 0.00 0.00 0.00 3.82
215 216 3.072915 ACCATCAAATCCTCTCACACACA 59.927 43.478 0.00 0.00 0.00 3.72
216 217 3.679389 ACCATCAAATCCTCTCACACAC 58.321 45.455 0.00 0.00 0.00 3.82
217 218 5.497464 TTACCATCAAATCCTCTCACACA 57.503 39.130 0.00 0.00 0.00 3.72
218 219 6.817765 TTTTACCATCAAATCCTCTCACAC 57.182 37.500 0.00 0.00 0.00 3.82
239 240 1.314730 ACGACATTGGCGACCTTTTT 58.685 45.000 20.74 0.00 0.00 1.94
240 241 2.172851 TACGACATTGGCGACCTTTT 57.827 45.000 20.74 0.00 0.00 2.27
241 242 2.172851 TTACGACATTGGCGACCTTT 57.827 45.000 20.74 0.00 0.00 3.11
242 243 2.396590 ATTACGACATTGGCGACCTT 57.603 45.000 20.74 0.00 0.00 3.50
243 244 3.746045 ATATTACGACATTGGCGACCT 57.254 42.857 20.74 4.55 0.00 3.85
244 245 3.805422 TCAATATTACGACATTGGCGACC 59.195 43.478 20.74 0.00 33.77 4.79
245 246 5.006358 AGTTCAATATTACGACATTGGCGAC 59.994 40.000 20.74 2.50 33.77 5.19
246 247 5.113383 AGTTCAATATTACGACATTGGCGA 58.887 37.500 20.74 0.00 33.77 5.54
247 248 5.234329 AGAGTTCAATATTACGACATTGGCG 59.766 40.000 11.09 11.09 33.77 5.69
248 249 6.604735 AGAGTTCAATATTACGACATTGGC 57.395 37.500 0.00 0.00 33.77 4.52
261 262 8.736244 GGCCACATTAACTTAAAGAGTTCAATA 58.264 33.333 0.00 0.00 45.40 1.90
262 263 7.309805 GGGCCACATTAACTTAAAGAGTTCAAT 60.310 37.037 4.39 0.00 45.40 2.57
263 264 6.015772 GGGCCACATTAACTTAAAGAGTTCAA 60.016 38.462 4.39 0.00 45.40 2.69
264 265 5.475564 GGGCCACATTAACTTAAAGAGTTCA 59.524 40.000 4.39 0.00 45.40 3.18
265 266 5.391629 CGGGCCACATTAACTTAAAGAGTTC 60.392 44.000 4.39 0.00 45.40 3.01
267 268 4.007659 CGGGCCACATTAACTTAAAGAGT 58.992 43.478 4.39 0.00 41.47 3.24
268 269 4.007659 ACGGGCCACATTAACTTAAAGAG 58.992 43.478 4.39 0.00 0.00 2.85
269 270 4.023726 ACGGGCCACATTAACTTAAAGA 57.976 40.909 4.39 0.00 0.00 2.52
270 271 4.481463 CAACGGGCCACATTAACTTAAAG 58.519 43.478 4.39 0.00 0.00 1.85
271 272 3.305471 GCAACGGGCCACATTAACTTAAA 60.305 43.478 4.39 0.00 36.11 1.52
272 273 2.229302 GCAACGGGCCACATTAACTTAA 59.771 45.455 4.39 0.00 36.11 1.85
273 274 1.813786 GCAACGGGCCACATTAACTTA 59.186 47.619 4.39 0.00 36.11 2.24
274 275 0.601057 GCAACGGGCCACATTAACTT 59.399 50.000 4.39 0.00 36.11 2.66
275 276 0.538516 TGCAACGGGCCACATTAACT 60.539 50.000 4.39 0.00 43.89 2.24
276 277 0.315568 TTGCAACGGGCCACATTAAC 59.684 50.000 4.39 0.00 43.89 2.01
277 278 0.315568 GTTGCAACGGGCCACATTAA 59.684 50.000 14.90 0.00 43.89 1.40
278 279 1.960612 GTTGCAACGGGCCACATTA 59.039 52.632 14.90 0.00 43.89 1.90
279 280 2.733945 GTTGCAACGGGCCACATT 59.266 55.556 14.90 0.00 43.89 2.71
297 298 0.171903 TACTAGAAGAACGCCCGTGC 59.828 55.000 0.00 0.00 0.00 5.34
298 299 2.159282 ACATACTAGAAGAACGCCCGTG 60.159 50.000 0.00 0.00 0.00 4.94
299 300 2.097825 ACATACTAGAAGAACGCCCGT 58.902 47.619 0.00 0.00 0.00 5.28
300 301 2.865343 ACATACTAGAAGAACGCCCG 57.135 50.000 0.00 0.00 0.00 6.13
301 302 5.747675 GTCTAAACATACTAGAAGAACGCCC 59.252 44.000 0.00 0.00 0.00 6.13
302 303 6.327934 TGTCTAAACATACTAGAAGAACGCC 58.672 40.000 0.00 0.00 0.00 5.68
303 304 7.096966 CGATGTCTAAACATACTAGAAGAACGC 60.097 40.741 0.00 0.00 46.20 4.84
304 305 7.376336 CCGATGTCTAAACATACTAGAAGAACG 59.624 40.741 0.00 0.00 46.20 3.95
305 306 8.404000 TCCGATGTCTAAACATACTAGAAGAAC 58.596 37.037 0.00 0.00 46.20 3.01
306 307 8.515695 TCCGATGTCTAAACATACTAGAAGAA 57.484 34.615 0.00 0.00 46.20 2.52
307 308 8.693120 ATCCGATGTCTAAACATACTAGAAGA 57.307 34.615 0.00 0.00 46.20 2.87
308 309 9.751542 AAATCCGATGTCTAAACATACTAGAAG 57.248 33.333 0.00 0.00 46.20 2.85
310 311 9.529325 CAAAATCCGATGTCTAAACATACTAGA 57.471 33.333 0.00 0.00 46.20 2.43
311 312 9.314321 ACAAAATCCGATGTCTAAACATACTAG 57.686 33.333 0.00 0.00 46.20 2.57
313 314 9.095065 GTACAAAATCCGATGTCTAAACATACT 57.905 33.333 0.00 0.00 46.20 2.12
314 315 9.095065 AGTACAAAATCCGATGTCTAAACATAC 57.905 33.333 0.00 0.00 46.20 2.39
390 391 7.755591 AGATCACACATGAACATAAACATGAC 58.244 34.615 12.90 0.00 44.28 3.06
409 410 8.969267 CAAATCTTGTATAGTTCCGTAGATCAC 58.031 37.037 0.00 0.00 0.00 3.06
575 652 1.363807 GTGAAAGCTTGGGCACACC 59.636 57.895 17.50 0.00 41.70 4.16
638 715 4.981806 TTTGAAACAGTTGAGTTGAGGG 57.018 40.909 0.00 0.00 0.00 4.30
669 786 6.863126 CCATGGAATTTGAAGTTCTGTTGTAC 59.137 38.462 5.56 0.00 0.00 2.90
683 800 0.908656 TGGGCCCACCATGGAATTTG 60.909 55.000 24.45 5.85 46.80 2.32
693 810 2.203625 TGAAAGCTTGGGCCCACC 60.204 61.111 28.70 19.34 39.73 4.61
695 812 0.689080 TTTGTGAAAGCTTGGGCCCA 60.689 50.000 24.45 24.45 39.73 5.36
696 813 0.033920 CTTTGTGAAAGCTTGGGCCC 59.966 55.000 17.59 17.59 39.73 5.80
697 814 0.752658 ACTTTGTGAAAGCTTGGGCC 59.247 50.000 0.00 0.00 42.27 5.80
698 815 2.602257 AACTTTGTGAAAGCTTGGGC 57.398 45.000 0.00 0.00 42.27 5.36
699 816 2.609002 GCAAACTTTGTGAAAGCTTGGG 59.391 45.455 0.00 0.00 42.15 4.12
700 817 2.609002 GGCAAACTTTGTGAAAGCTTGG 59.391 45.455 0.00 0.48 42.15 3.61
701 818 3.524541 AGGCAAACTTTGTGAAAGCTTG 58.475 40.909 0.00 7.52 43.78 4.01
702 819 3.430790 GGAGGCAAACTTTGTGAAAGCTT 60.431 43.478 0.00 0.00 42.27 3.74
703 820 2.101415 GGAGGCAAACTTTGTGAAAGCT 59.899 45.455 3.48 0.00 42.27 3.74
704 821 2.159114 TGGAGGCAAACTTTGTGAAAGC 60.159 45.455 3.48 0.00 42.27 3.51
705 822 3.799281 TGGAGGCAAACTTTGTGAAAG 57.201 42.857 3.48 0.00 44.10 2.62
706 823 3.450457 ACATGGAGGCAAACTTTGTGAAA 59.550 39.130 0.00 0.00 0.00 2.69
707 824 3.030291 ACATGGAGGCAAACTTTGTGAA 58.970 40.909 0.00 0.00 0.00 3.18
708 825 2.665165 ACATGGAGGCAAACTTTGTGA 58.335 42.857 0.00 0.00 0.00 3.58
709 826 3.068590 AGAACATGGAGGCAAACTTTGTG 59.931 43.478 0.00 0.00 0.00 3.33
710 827 3.299503 AGAACATGGAGGCAAACTTTGT 58.700 40.909 0.00 0.00 0.00 2.83
711 828 3.318839 TGAGAACATGGAGGCAAACTTTG 59.681 43.478 0.00 0.00 0.00 2.77
712 829 3.565307 TGAGAACATGGAGGCAAACTTT 58.435 40.909 0.00 0.00 0.00 2.66
713 830 3.228188 TGAGAACATGGAGGCAAACTT 57.772 42.857 0.00 0.00 0.00 2.66
714 831 2.887152 GTTGAGAACATGGAGGCAAACT 59.113 45.455 0.00 0.00 0.00 2.66
715 832 2.887152 AGTTGAGAACATGGAGGCAAAC 59.113 45.455 0.00 0.00 0.00 2.93
716 833 3.149196 GAGTTGAGAACATGGAGGCAAA 58.851 45.455 0.00 0.00 0.00 3.68
717 834 2.106338 TGAGTTGAGAACATGGAGGCAA 59.894 45.455 0.00 0.00 0.00 4.52
718 835 1.699083 TGAGTTGAGAACATGGAGGCA 59.301 47.619 0.00 0.00 0.00 4.75
719 836 2.479566 TGAGTTGAGAACATGGAGGC 57.520 50.000 0.00 0.00 0.00 4.70
720 837 3.750130 CAGTTGAGTTGAGAACATGGAGG 59.250 47.826 0.00 0.00 0.00 4.30
721 838 4.384056 ACAGTTGAGTTGAGAACATGGAG 58.616 43.478 0.00 0.00 0.00 3.86
722 839 4.422073 ACAGTTGAGTTGAGAACATGGA 57.578 40.909 0.00 0.00 0.00 3.41
723 840 5.066375 TGAAACAGTTGAGTTGAGAACATGG 59.934 40.000 0.00 0.00 0.00 3.66
724 841 6.122850 TGAAACAGTTGAGTTGAGAACATG 57.877 37.500 0.00 0.00 0.00 3.21
725 842 6.757897 TTGAAACAGTTGAGTTGAGAACAT 57.242 33.333 0.00 0.00 0.00 2.71
726 843 6.567687 TTTGAAACAGTTGAGTTGAGAACA 57.432 33.333 0.00 0.00 0.00 3.18
727 844 7.029563 ACATTTGAAACAGTTGAGTTGAGAAC 58.970 34.615 0.00 0.00 0.00 3.01
728 845 7.121168 AGACATTTGAAACAGTTGAGTTGAGAA 59.879 33.333 0.00 0.00 0.00 2.87
729 846 6.599244 AGACATTTGAAACAGTTGAGTTGAGA 59.401 34.615 0.00 0.00 0.00 3.27
730 847 6.789262 AGACATTTGAAACAGTTGAGTTGAG 58.211 36.000 0.00 0.00 0.00 3.02
731 848 6.757897 AGACATTTGAAACAGTTGAGTTGA 57.242 33.333 0.00 0.00 0.00 3.18
732 849 7.471721 TGTAGACATTTGAAACAGTTGAGTTG 58.528 34.615 0.00 0.00 0.00 3.16
733 850 7.624360 TGTAGACATTTGAAACAGTTGAGTT 57.376 32.000 0.00 0.00 0.00 3.01
734 851 7.120579 TGTTGTAGACATTTGAAACAGTTGAGT 59.879 33.333 0.00 0.00 32.00 3.41
735 852 7.471721 TGTTGTAGACATTTGAAACAGTTGAG 58.528 34.615 0.00 0.00 32.00 3.02
736 853 7.335673 TCTGTTGTAGACATTTGAAACAGTTGA 59.664 33.333 11.76 0.00 43.07 3.18
737 854 7.471721 TCTGTTGTAGACATTTGAAACAGTTG 58.528 34.615 11.76 0.00 43.07 3.16
738 855 7.624360 TCTGTTGTAGACATTTGAAACAGTT 57.376 32.000 11.76 0.00 43.07 3.16
739 856 7.624360 TTCTGTTGTAGACATTTGAAACAGT 57.376 32.000 11.76 0.00 43.07 3.55
740 857 9.520204 AAATTCTGTTGTAGACATTTGAAACAG 57.480 29.630 6.95 6.95 43.62 3.16
741 858 9.868277 AAAATTCTGTTGTAGACATTTGAAACA 57.132 25.926 0.00 0.00 37.69 2.83
755 872 9.325198 GGTGAAATTCCTTTAAAATTCTGTTGT 57.675 29.630 0.00 0.00 0.00 3.32
756 873 9.546428 AGGTGAAATTCCTTTAAAATTCTGTTG 57.454 29.630 0.00 0.00 30.18 3.33
764 882 8.990163 AGTGAGTAGGTGAAATTCCTTTAAAA 57.010 30.769 0.00 0.00 36.60 1.52
898 1019 3.565307 TGGCATTGATTAATCTCCACCC 58.435 45.455 16.24 10.31 0.00 4.61
912 1038 0.968901 ACCTGGTCTGCATGGCATTG 60.969 55.000 0.00 0.00 38.13 2.82
943 1069 3.258228 TAGTGGCTGGCTGTGGCTG 62.258 63.158 2.00 0.00 38.73 4.85
944 1070 2.930019 TAGTGGCTGGCTGTGGCT 60.930 61.111 2.00 0.00 38.73 4.75
945 1071 1.899437 TAGTAGTGGCTGGCTGTGGC 61.899 60.000 2.00 0.00 37.82 5.01
946 1072 0.833287 ATAGTAGTGGCTGGCTGTGG 59.167 55.000 2.00 0.00 0.00 4.17
947 1073 3.819564 TTATAGTAGTGGCTGGCTGTG 57.180 47.619 2.00 0.00 0.00 3.66
948 1074 3.432326 GCTTTATAGTAGTGGCTGGCTGT 60.432 47.826 2.00 0.00 0.00 4.40
973 1104 0.962356 CCAAGTGATCCGCCAAGCTT 60.962 55.000 0.00 0.00 0.00 3.74
997 1128 2.415857 CTGTGAATCTTCAGCTGAGTGC 59.584 50.000 17.43 6.69 37.98 4.40
1060 1208 1.823899 GCCGGCCGATCTTTTGGAT 60.824 57.895 30.73 0.00 37.37 3.41
1162 1321 4.452733 CGAAGACGTCCTGGGGCC 62.453 72.222 13.01 0.00 34.56 5.80
1280 1440 5.579718 CAGATTATAGTCGTTGACGTTCCT 58.420 41.667 3.25 1.75 40.80 3.36
1281 1441 4.206609 GCAGATTATAGTCGTTGACGTTCC 59.793 45.833 3.25 0.00 40.80 3.62
1282 1442 4.796830 TGCAGATTATAGTCGTTGACGTTC 59.203 41.667 3.25 0.00 40.80 3.95
1283 1443 4.740268 TGCAGATTATAGTCGTTGACGTT 58.260 39.130 3.25 0.00 40.80 3.99
1340 1514 0.452184 TTCGCCTTCGTGCAACAAAA 59.548 45.000 0.00 0.00 35.74 2.44
1872 2049 2.222886 GAGACCATCTCGAAGATCGGA 58.777 52.381 14.18 0.00 40.88 4.55
2091 2304 0.107214 TCCACCTCGCATTCCCATTC 60.107 55.000 0.00 0.00 0.00 2.67
2095 2308 2.106683 CGTTCCACCTCGCATTCCC 61.107 63.158 0.00 0.00 0.00 3.97
2096 2309 1.079405 TCGTTCCACCTCGCATTCC 60.079 57.895 0.00 0.00 0.00 3.01
2097 2310 1.696832 GCTCGTTCCACCTCGCATTC 61.697 60.000 0.00 0.00 0.00 2.67
2098 2311 1.741770 GCTCGTTCCACCTCGCATT 60.742 57.895 0.00 0.00 0.00 3.56
2099 2312 2.125512 GCTCGTTCCACCTCGCAT 60.126 61.111 0.00 0.00 0.00 4.73
2100 2313 3.303135 AGCTCGTTCCACCTCGCA 61.303 61.111 0.00 0.00 0.00 5.10
2101 2314 2.811317 CAGCTCGTTCCACCTCGC 60.811 66.667 0.00 0.00 0.00 5.03
2102 2315 1.006102 AACAGCTCGTTCCACCTCG 60.006 57.895 0.00 0.00 29.27 4.63
2323 2537 1.301009 GCCTCGATCGTGATTCCCC 60.301 63.158 18.20 0.00 0.00 4.81
2362 2576 2.981921 TGGATGGATCATCTGGCTAGT 58.018 47.619 7.68 0.00 40.39 2.57
2368 2582 1.804748 CGTGCATGGATGGATCATCTG 59.195 52.381 0.00 1.48 40.39 2.90
2374 2610 2.203394 GGCCGTGCATGGATGGAT 60.203 61.111 29.54 0.00 0.00 3.41
2439 2677 0.249114 TGACACACGCGTACACACAT 60.249 50.000 13.44 0.00 0.00 3.21
2456 2694 5.062528 TGATGACTTGTGCACTTTGTATGA 58.937 37.500 19.41 0.00 0.00 2.15
2506 2747 2.602878 GTATATATGTGACGTGGCCGG 58.397 52.381 0.00 0.00 38.78 6.13
2566 2807 1.757699 GGAGTAGCTAGTCTTGTGGGG 59.242 57.143 24.39 0.00 0.00 4.96
2662 2903 7.769044 GTGGACTGCTAGAAAATATTTGGAGTA 59.231 37.037 9.43 3.71 0.00 2.59
2687 2928 6.484643 CAGGTGCATATAGCTAGAAAACATGT 59.515 38.462 0.00 0.00 45.94 3.21
2726 2967 1.371183 CAGAAGACGGTGGCCTCAA 59.629 57.895 3.32 0.00 0.00 3.02
2737 2978 0.390472 CTTGGTCCTCGGCAGAAGAC 60.390 60.000 7.03 7.03 37.16 3.01
2738 2979 1.975327 CTTGGTCCTCGGCAGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
2739 2980 1.743252 GCTTGGTCCTCGGCAGAAG 60.743 63.158 0.00 0.00 0.00 2.85
2740 2981 2.050836 TTGCTTGGTCCTCGGCAGAA 62.051 55.000 0.00 0.00 36.06 3.02
2744 2987 1.377202 TGATTGCTTGGTCCTCGGC 60.377 57.895 0.00 0.00 0.00 5.54
2776 3020 4.439776 GTGAACCTTGTTAACAAATCACGC 59.560 41.667 27.71 19.73 35.89 5.34
2779 3023 4.882427 TCGGTGAACCTTGTTAACAAATCA 59.118 37.500 20.89 19.97 35.15 2.57
2791 3035 2.769663 TGTAGCCATATCGGTGAACCTT 59.230 45.455 0.00 0.00 36.97 3.50
2856 3104 4.268939 CGACCGGGCGCGGTATTA 62.269 66.667 42.77 0.00 43.07 0.98
2939 3188 1.092348 CGAGGGTAGACACACGATGA 58.908 55.000 0.00 0.00 31.29 2.92
2965 3214 3.068873 CACTTGTATCCTAGGCCTCTCAC 59.931 52.174 9.68 1.85 0.00 3.51
3198 3449 1.069765 AGTTGCAGGTGGAGTCACG 59.930 57.895 0.00 0.00 44.50 4.35
3225 3476 3.906014 TGACTGTGAAGAAGACGAGAG 57.094 47.619 0.00 0.00 0.00 3.20
3301 3553 0.872388 GATGGCGTTGAACGGAAACT 59.128 50.000 20.01 0.00 42.82 2.66
3304 3556 0.533085 TGTGATGGCGTTGAACGGAA 60.533 50.000 20.01 0.00 42.82 4.30
3328 3580 0.745128 TTTTCACGCGGACAGTGGTT 60.745 50.000 12.47 0.00 39.86 3.67
3447 3703 0.117140 TCAGGGTGACAGAGGGTGAT 59.883 55.000 0.00 0.00 0.00 3.06
3455 3711 2.738846 CGAATTTGACTCAGGGTGACAG 59.261 50.000 0.00 0.00 0.00 3.51
3506 3768 5.997746 GCTATAGCTATGGGACATGTCAAAA 59.002 40.000 26.47 11.96 40.22 2.44
3535 3799 2.325484 TGACAAGTACAGAAGGAGGCA 58.675 47.619 0.00 0.00 0.00 4.75
3566 3830 0.182299 TGGTGTTCAGTGCACATGGA 59.818 50.000 21.04 10.69 38.51 3.41
3608 3872 5.009410 AGTCTGAAATTGTCAAAAGCTGAGG 59.991 40.000 0.00 0.00 35.22 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.