Multiple sequence alignment - TraesCS4B01G357000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G357000 chr4B 100.000 2384 0 0 1 2384 647666074 647663691 0.000000e+00 4403.0
1 TraesCS4B01G357000 chr5A 93.750 2032 89 8 1 2024 687282669 687280668 0.000000e+00 3014.0
2 TraesCS4B01G357000 chr5A 97.500 200 5 0 2022 2221 687280376 687280177 2.270000e-90 342.0
3 TraesCS4B01G357000 chr4D 88.172 1395 140 22 828 2215 502762199 502760823 0.000000e+00 1639.0
4 TraesCS4B01G357000 chr4D 92.021 777 52 5 1 771 502762976 502762204 0.000000e+00 1083.0
5 TraesCS4B01G357000 chr4D 89.691 97 10 0 2215 2311 51347226 51347130 8.950000e-25 124.0
6 TraesCS4B01G357000 chr6D 78.356 827 163 10 995 1808 7284695 7283872 2.720000e-144 521.0
7 TraesCS4B01G357000 chr6D 92.857 98 7 0 2214 2311 363003008 363002911 2.470000e-30 143.0
8 TraesCS4B01G357000 chr2A 76.603 842 181 12 995 1823 765175586 765174748 1.300000e-122 449.0
9 TraesCS4B01G357000 chr2A 75.758 726 155 17 997 1712 605188506 605187792 1.750000e-91 346.0
10 TraesCS4B01G357000 chr2A 97.297 37 1 0 2311 2347 15013655 15013691 1.980000e-06 63.9
11 TraesCS4B01G357000 chr6B 75.281 801 185 13 995 1788 42601443 42600649 1.040000e-98 370.0
12 TraesCS4B01G357000 chr6B 75.966 233 56 0 1479 1711 42549538 42549306 1.160000e-23 121.0
13 TraesCS4B01G357000 chr3B 74.035 751 171 21 976 1712 804167941 804168681 3.880000e-73 285.0
14 TraesCS4B01G357000 chrUn 78.214 459 89 8 992 1441 76213288 76213744 1.390000e-72 283.0
15 TraesCS4B01G357000 chrUn 78.214 459 89 8 992 1441 300460189 300460645 1.390000e-72 283.0
16 TraesCS4B01G357000 chrUn 82.060 301 52 2 1509 1808 76213782 76214081 3.040000e-64 255.0
17 TraesCS4B01G357000 chrUn 82.060 301 52 2 1509 1808 300460683 300460982 3.040000e-64 255.0
18 TraesCS4B01G357000 chrUn 91.837 98 8 0 2214 2311 418297557 418297460 1.150000e-28 137.0
19 TraesCS4B01G357000 chrUn 89.796 98 10 0 2214 2311 108986238 108986141 2.490000e-25 126.0
20 TraesCS4B01G357000 chr1D 90.741 108 8 2 2205 2311 441646787 441646893 2.470000e-30 143.0
21 TraesCS4B01G357000 chr1D 90.722 97 9 0 2215 2311 226959262 226959166 1.920000e-26 130.0
22 TraesCS4B01G357000 chr2B 91.837 98 8 0 2214 2311 12180445 12180542 1.150000e-28 137.0
23 TraesCS4B01G357000 chr7D 90.816 98 9 0 2214 2311 21765537 21765440 5.350000e-27 132.0
24 TraesCS4B01G357000 chr7D 90.722 97 9 0 2215 2311 169479814 169479718 1.920000e-26 130.0
25 TraesCS4B01G357000 chr5D 92.157 51 3 1 2307 2357 260117608 260117559 1.180000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G357000 chr4B 647663691 647666074 2383 True 4403 4403 100.0000 1 2384 1 chr4B.!!$R1 2383
1 TraesCS4B01G357000 chr5A 687280177 687282669 2492 True 1678 3014 95.6250 1 2221 2 chr5A.!!$R1 2220
2 TraesCS4B01G357000 chr4D 502760823 502762976 2153 True 1361 1639 90.0965 1 2215 2 chr4D.!!$R2 2214
3 TraesCS4B01G357000 chr6D 7283872 7284695 823 True 521 521 78.3560 995 1808 1 chr6D.!!$R1 813
4 TraesCS4B01G357000 chr2A 765174748 765175586 838 True 449 449 76.6030 995 1823 1 chr2A.!!$R2 828
5 TraesCS4B01G357000 chr2A 605187792 605188506 714 True 346 346 75.7580 997 1712 1 chr2A.!!$R1 715
6 TraesCS4B01G357000 chr6B 42600649 42601443 794 True 370 370 75.2810 995 1788 1 chr6B.!!$R2 793
7 TraesCS4B01G357000 chr3B 804167941 804168681 740 False 285 285 74.0350 976 1712 1 chr3B.!!$F1 736
8 TraesCS4B01G357000 chrUn 76213288 76214081 793 False 269 283 80.1370 992 1808 2 chrUn.!!$F1 816
9 TraesCS4B01G357000 chrUn 300460189 300460982 793 False 269 283 80.1370 992 1808 2 chrUn.!!$F2 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 882 0.17915 GCTAGCTATCGGCATCTCGG 60.179 60.0 7.7 0.0 44.79 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 2708 0.105658 TGGGGCGAGCCTATCTAACT 60.106 55.0 14.33 0.0 36.1 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.594547 CCAATCTACATATGCATTCTCTCTGG 59.405 42.308 3.54 0.00 0.00 3.86
73 74 4.511527 TGCATTCTCTCTGGTGAGATTTC 58.488 43.478 3.69 0.00 46.93 2.17
136 140 6.980593 AGCTCTGACATTATGATCTGTAGAC 58.019 40.000 0.00 0.00 0.00 2.59
228 232 6.114187 TGGCGTGGATCTAGATGATTAATT 57.886 37.500 10.74 0.00 35.14 1.40
229 233 5.934043 TGGCGTGGATCTAGATGATTAATTG 59.066 40.000 10.74 0.00 35.14 2.32
273 277 0.179189 GCATGCAGCCTCGTTAACAC 60.179 55.000 14.21 0.00 37.23 3.32
302 306 4.957327 AGGGTGAATCTAGAGGACAACTAC 59.043 45.833 0.00 0.00 0.00 2.73
447 451 1.003839 TAAGTTCAGTGCAGGCCCG 60.004 57.895 0.00 0.00 0.00 6.13
472 476 2.365617 TGTGAGAGAGACCTGTTGGAAC 59.634 50.000 0.00 0.00 37.04 3.62
558 562 4.514066 GGGCCGGTATCTTGTTAAGTTATG 59.486 45.833 1.90 0.00 0.00 1.90
711 718 0.960364 TCTCGCTTTGGCCATGGAAC 60.960 55.000 18.40 8.04 34.44 3.62
714 721 2.824071 CGCTTTGGCCATGGAACAGC 62.824 60.000 18.40 15.21 37.04 4.40
786 793 4.143179 GCTCATTTGCTGTGAAATTGCTTC 60.143 41.667 0.00 0.00 34.31 3.86
802 809 3.916761 TGCTTCCAAATCATCAAACTGC 58.083 40.909 0.00 0.00 0.00 4.40
813 820 4.552355 TCATCAAACTGCATTGCTTTCTG 58.448 39.130 10.49 3.00 0.00 3.02
854 861 3.718434 TCATTCCCTCTGGTTATCATGCT 59.282 43.478 0.00 0.00 0.00 3.79
855 862 4.907269 TCATTCCCTCTGGTTATCATGCTA 59.093 41.667 0.00 0.00 0.00 3.49
856 863 4.963318 TTCCCTCTGGTTATCATGCTAG 57.037 45.455 0.00 0.00 0.00 3.42
857 864 2.634940 TCCCTCTGGTTATCATGCTAGC 59.365 50.000 8.10 8.10 0.00 3.42
858 865 2.636893 CCCTCTGGTTATCATGCTAGCT 59.363 50.000 17.23 0.00 0.00 3.32
859 866 3.834813 CCCTCTGGTTATCATGCTAGCTA 59.165 47.826 17.23 2.58 0.00 3.32
860 867 4.081752 CCCTCTGGTTATCATGCTAGCTAG 60.082 50.000 16.84 16.84 0.00 3.42
871 878 2.202295 GCTAGCTAGCTATCGGCATC 57.798 55.000 33.71 5.30 45.62 3.91
872 879 1.748493 GCTAGCTAGCTATCGGCATCT 59.252 52.381 33.71 0.00 45.62 2.90
873 880 2.223479 GCTAGCTAGCTATCGGCATCTC 60.223 54.545 33.71 4.59 45.62 2.75
874 881 0.808125 AGCTAGCTATCGGCATCTCG 59.192 55.000 17.69 0.00 44.79 4.04
875 882 0.179150 GCTAGCTATCGGCATCTCGG 60.179 60.000 7.70 0.00 44.79 4.63
876 883 1.454201 CTAGCTATCGGCATCTCGGA 58.546 55.000 0.00 0.00 44.79 4.55
877 884 1.813178 CTAGCTATCGGCATCTCGGAA 59.187 52.381 0.00 0.00 44.79 4.30
878 885 0.600557 AGCTATCGGCATCTCGGAAG 59.399 55.000 0.00 0.00 44.79 3.46
879 886 0.315568 GCTATCGGCATCTCGGAAGT 59.684 55.000 0.00 0.00 41.35 3.01
880 887 1.269831 GCTATCGGCATCTCGGAAGTT 60.270 52.381 0.00 0.00 41.35 2.66
881 888 2.398498 CTATCGGCATCTCGGAAGTTG 58.602 52.381 0.00 0.00 0.00 3.16
934 969 9.225436 GGAAGAAAACTATTCTGAAGTTCTGAT 57.775 33.333 12.62 6.61 36.17 2.90
939 974 8.729805 AAACTATTCTGAAGTTCTGATCCATC 57.270 34.615 12.62 0.00 36.17 3.51
1342 1380 2.568623 AACTTTGAGGGCTCGTCATT 57.431 45.000 0.00 0.00 0.00 2.57
1578 1626 4.400884 CGGTATCAATTGTGGGATTTGGAA 59.599 41.667 5.13 0.00 0.00 3.53
1619 1667 3.568443 TGCCAATGAGGTATACCGTAGA 58.432 45.455 16.31 2.23 42.08 2.59
1646 1694 2.096496 GGGAGAATTTGACACTCATGCG 59.904 50.000 0.00 0.00 33.00 4.73
1692 1740 6.385033 CCTGACATTCAAAAACTTCTCCATC 58.615 40.000 0.00 0.00 0.00 3.51
1736 1784 6.162079 CACAGAGACATCTATTCACACTTGT 58.838 40.000 0.00 0.00 33.22 3.16
1965 2036 9.757227 TTGTTTAAAATGCATTAGTTAGTTGCT 57.243 25.926 13.39 0.00 37.28 3.91
2224 2589 8.790718 TCGACCTTTATACATTACTAGATGACC 58.209 37.037 0.00 0.00 0.00 4.02
2225 2590 8.027771 CGACCTTTATACATTACTAGATGACCC 58.972 40.741 0.00 0.00 0.00 4.46
2226 2591 7.893658 ACCTTTATACATTACTAGATGACCCG 58.106 38.462 0.00 0.00 0.00 5.28
2227 2592 7.508296 ACCTTTATACATTACTAGATGACCCGT 59.492 37.037 0.00 0.00 0.00 5.28
2228 2593 8.365647 CCTTTATACATTACTAGATGACCCGTT 58.634 37.037 0.00 0.00 0.00 4.44
2229 2594 9.193133 CTTTATACATTACTAGATGACCCGTTG 57.807 37.037 0.00 0.00 0.00 4.10
2230 2595 3.793559 ACATTACTAGATGACCCGTTGC 58.206 45.455 0.00 0.00 0.00 4.17
2231 2596 2.572191 TTACTAGATGACCCGTTGCG 57.428 50.000 0.00 0.00 0.00 4.85
2232 2597 0.101759 TACTAGATGACCCGTTGCGC 59.898 55.000 0.00 0.00 0.00 6.09
2233 2598 1.883084 CTAGATGACCCGTTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
2234 2599 2.572095 CTAGATGACCCGTTGCGCCA 62.572 60.000 4.18 0.00 0.00 5.69
2235 2600 2.173758 TAGATGACCCGTTGCGCCAA 62.174 55.000 4.18 0.00 0.00 4.52
2236 2601 2.361104 ATGACCCGTTGCGCCAAT 60.361 55.556 4.18 0.00 0.00 3.16
2237 2602 2.597117 GATGACCCGTTGCGCCAATG 62.597 60.000 4.18 4.86 0.00 2.82
2238 2603 4.114997 GACCCGTTGCGCCAATGG 62.115 66.667 18.38 18.38 46.70 3.16
2257 2622 2.124942 GCAAAGGGCGAGAGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
2258 2623 2.124942 CAAAGGGCGAGAGGGAGC 60.125 66.667 0.00 0.00 0.00 4.70
2264 2629 3.617368 GCGAGAGGGAGCCAAGTA 58.383 61.111 0.00 0.00 0.00 2.24
2265 2630 2.128729 GCGAGAGGGAGCCAAGTAT 58.871 57.895 0.00 0.00 0.00 2.12
2266 2631 0.466124 GCGAGAGGGAGCCAAGTATT 59.534 55.000 0.00 0.00 0.00 1.89
2287 2652 9.194972 AGTATTGAGAGAATATTCAGACACTCA 57.805 33.333 17.56 17.20 0.00 3.41
2288 2653 9.809096 GTATTGAGAGAATATTCAGACACTCAA 57.191 33.333 25.09 25.09 43.64 3.02
2289 2654 8.945481 ATTGAGAGAATATTCAGACACTCAAG 57.055 34.615 25.84 0.00 43.08 3.02
2290 2655 7.473735 TGAGAGAATATTCAGACACTCAAGT 57.526 36.000 17.56 0.00 31.69 3.16
2291 2656 7.542890 TGAGAGAATATTCAGACACTCAAGTC 58.457 38.462 17.56 2.08 38.81 3.01
2293 2658 7.771183 AGAGAATATTCAGACACTCAAGTCTC 58.229 38.462 17.56 1.19 45.35 3.36
2294 2659 7.615365 AGAGAATATTCAGACACTCAAGTCTCT 59.385 37.037 17.56 3.45 45.35 3.10
2295 2660 8.815565 AGAATATTCAGACACTCAAGTCTCTA 57.184 34.615 17.56 0.00 45.35 2.43
2296 2661 8.682710 AGAATATTCAGACACTCAAGTCTCTAC 58.317 37.037 17.56 0.00 45.35 2.59
2297 2662 8.588290 AATATTCAGACACTCAAGTCTCTACT 57.412 34.615 0.00 0.00 45.35 2.57
2298 2663 5.697473 TTCAGACACTCAAGTCTCTACTG 57.303 43.478 0.00 0.00 45.35 2.74
2299 2664 3.504134 TCAGACACTCAAGTCTCTACTGC 59.496 47.826 0.00 0.00 45.35 4.40
2300 2665 3.505680 CAGACACTCAAGTCTCTACTGCT 59.494 47.826 0.00 0.00 45.35 4.24
2301 2666 3.756434 AGACACTCAAGTCTCTACTGCTC 59.244 47.826 0.00 0.00 45.35 4.26
2302 2667 2.486203 ACACTCAAGTCTCTACTGCTCG 59.514 50.000 0.00 0.00 35.62 5.03
2303 2668 2.486203 CACTCAAGTCTCTACTGCTCGT 59.514 50.000 0.00 0.00 35.62 4.18
2304 2669 3.685272 CACTCAAGTCTCTACTGCTCGTA 59.315 47.826 0.00 0.00 35.62 3.43
2305 2670 3.685756 ACTCAAGTCTCTACTGCTCGTAC 59.314 47.826 0.00 0.00 35.62 3.67
2306 2671 3.671716 TCAAGTCTCTACTGCTCGTACA 58.328 45.455 0.00 0.00 35.62 2.90
2307 2672 4.262617 TCAAGTCTCTACTGCTCGTACAT 58.737 43.478 0.00 0.00 35.62 2.29
2308 2673 5.425630 TCAAGTCTCTACTGCTCGTACATA 58.574 41.667 0.00 0.00 35.62 2.29
2309 2674 5.524281 TCAAGTCTCTACTGCTCGTACATAG 59.476 44.000 0.00 0.00 35.62 2.23
2310 2675 5.279255 AGTCTCTACTGCTCGTACATAGA 57.721 43.478 0.00 0.00 33.57 1.98
2311 2676 5.672503 AGTCTCTACTGCTCGTACATAGAA 58.327 41.667 0.00 0.00 33.57 2.10
2312 2677 5.524646 AGTCTCTACTGCTCGTACATAGAAC 59.475 44.000 0.00 0.00 33.57 3.01
2313 2678 5.524646 GTCTCTACTGCTCGTACATAGAACT 59.475 44.000 0.00 0.00 0.00 3.01
2314 2679 5.754406 TCTCTACTGCTCGTACATAGAACTC 59.246 44.000 0.00 0.00 0.00 3.01
2315 2680 5.425630 TCTACTGCTCGTACATAGAACTCA 58.574 41.667 0.00 0.00 0.00 3.41
2316 2681 6.056236 TCTACTGCTCGTACATAGAACTCAT 58.944 40.000 0.00 0.00 0.00 2.90
2317 2682 5.176407 ACTGCTCGTACATAGAACTCATC 57.824 43.478 0.00 0.00 0.00 2.92
2318 2683 4.640647 ACTGCTCGTACATAGAACTCATCA 59.359 41.667 0.00 0.00 0.00 3.07
2319 2684 5.125578 ACTGCTCGTACATAGAACTCATCAA 59.874 40.000 0.00 0.00 0.00 2.57
2320 2685 5.961272 TGCTCGTACATAGAACTCATCAAA 58.039 37.500 0.00 0.00 0.00 2.69
2321 2686 6.573434 TGCTCGTACATAGAACTCATCAAAT 58.427 36.000 0.00 0.00 0.00 2.32
2322 2687 7.712797 TGCTCGTACATAGAACTCATCAAATA 58.287 34.615 0.00 0.00 0.00 1.40
2323 2688 8.360390 TGCTCGTACATAGAACTCATCAAATAT 58.640 33.333 0.00 0.00 0.00 1.28
2324 2689 8.642885 GCTCGTACATAGAACTCATCAAATATG 58.357 37.037 0.00 0.00 0.00 1.78
2325 2690 9.133627 CTCGTACATAGAACTCATCAAATATGG 57.866 37.037 0.00 0.00 0.00 2.74
2326 2691 7.598869 TCGTACATAGAACTCATCAAATATGGC 59.401 37.037 0.00 0.00 0.00 4.40
2327 2692 7.600375 CGTACATAGAACTCATCAAATATGGCT 59.400 37.037 0.00 0.00 0.00 4.75
2328 2693 7.741027 ACATAGAACTCATCAAATATGGCTG 57.259 36.000 0.00 0.00 0.00 4.85
2329 2694 6.713903 ACATAGAACTCATCAAATATGGCTGG 59.286 38.462 0.00 0.00 0.00 4.85
2330 2695 5.378230 AGAACTCATCAAATATGGCTGGA 57.622 39.130 0.00 0.00 0.00 3.86
2331 2696 5.950023 AGAACTCATCAAATATGGCTGGAT 58.050 37.500 0.00 0.00 0.00 3.41
2332 2697 6.371278 AGAACTCATCAAATATGGCTGGATT 58.629 36.000 0.00 0.00 0.00 3.01
2333 2698 6.489361 AGAACTCATCAAATATGGCTGGATTC 59.511 38.462 0.00 0.00 0.00 2.52
2334 2699 5.950023 ACTCATCAAATATGGCTGGATTCT 58.050 37.500 0.00 0.00 0.00 2.40
2335 2700 5.768662 ACTCATCAAATATGGCTGGATTCTG 59.231 40.000 0.00 0.00 0.00 3.02
2336 2701 5.074804 TCATCAAATATGGCTGGATTCTGG 58.925 41.667 0.00 0.00 0.00 3.86
2337 2702 4.524802 TCAAATATGGCTGGATTCTGGT 57.475 40.909 0.00 0.00 0.00 4.00
2338 2703 4.464008 TCAAATATGGCTGGATTCTGGTC 58.536 43.478 0.00 0.00 0.00 4.02
2339 2704 4.166725 TCAAATATGGCTGGATTCTGGTCT 59.833 41.667 0.00 0.00 0.00 3.85
2340 2705 3.784511 ATATGGCTGGATTCTGGTCTG 57.215 47.619 0.00 0.00 0.00 3.51
2341 2706 0.549950 ATGGCTGGATTCTGGTCTGG 59.450 55.000 0.00 0.00 0.00 3.86
2342 2707 0.547471 TGGCTGGATTCTGGTCTGGA 60.547 55.000 0.00 0.00 0.00 3.86
2343 2708 0.620556 GGCTGGATTCTGGTCTGGAA 59.379 55.000 0.00 0.00 0.00 3.53
2344 2709 1.407989 GGCTGGATTCTGGTCTGGAAG 60.408 57.143 0.00 0.00 0.00 3.46
2345 2710 1.280421 GCTGGATTCTGGTCTGGAAGT 59.720 52.381 0.00 0.00 33.76 3.01
2346 2711 2.290577 GCTGGATTCTGGTCTGGAAGTT 60.291 50.000 0.00 0.00 33.76 2.66
2347 2712 3.055094 GCTGGATTCTGGTCTGGAAGTTA 60.055 47.826 0.00 0.00 33.76 2.24
2348 2713 4.764172 CTGGATTCTGGTCTGGAAGTTAG 58.236 47.826 0.00 0.00 33.76 2.34
2349 2714 4.425772 TGGATTCTGGTCTGGAAGTTAGA 58.574 43.478 0.00 0.00 33.76 2.10
2350 2715 5.032846 TGGATTCTGGTCTGGAAGTTAGAT 58.967 41.667 0.00 0.00 33.76 1.98
2351 2716 6.202331 TGGATTCTGGTCTGGAAGTTAGATA 58.798 40.000 0.00 0.00 33.76 1.98
2352 2717 6.325028 TGGATTCTGGTCTGGAAGTTAGATAG 59.675 42.308 0.00 0.00 33.76 2.08
2353 2718 6.239458 GGATTCTGGTCTGGAAGTTAGATAGG 60.239 46.154 0.00 0.00 33.76 2.57
2354 2719 3.961408 TCTGGTCTGGAAGTTAGATAGGC 59.039 47.826 0.00 0.00 33.76 3.93
2355 2720 3.964031 CTGGTCTGGAAGTTAGATAGGCT 59.036 47.826 0.00 0.00 33.76 4.58
2356 2721 3.961408 TGGTCTGGAAGTTAGATAGGCTC 59.039 47.826 0.00 0.00 33.76 4.70
2357 2722 3.004944 GGTCTGGAAGTTAGATAGGCTCG 59.995 52.174 0.00 0.00 33.76 5.03
2358 2723 2.623889 TCTGGAAGTTAGATAGGCTCGC 59.376 50.000 0.00 0.00 33.76 5.03
2359 2724 1.687123 TGGAAGTTAGATAGGCTCGCC 59.313 52.381 0.00 0.00 0.00 5.54
2360 2725 1.001068 GGAAGTTAGATAGGCTCGCCC 59.999 57.143 3.92 0.00 36.58 6.13
2361 2726 1.001068 GAAGTTAGATAGGCTCGCCCC 59.999 57.143 3.92 0.00 36.58 5.80
2362 2727 0.105658 AGTTAGATAGGCTCGCCCCA 60.106 55.000 3.92 0.00 36.58 4.96
2363 2728 0.756903 GTTAGATAGGCTCGCCCCAA 59.243 55.000 3.92 0.00 36.58 4.12
2364 2729 1.140252 GTTAGATAGGCTCGCCCCAAA 59.860 52.381 3.92 0.00 36.58 3.28
2365 2730 1.729586 TAGATAGGCTCGCCCCAAAT 58.270 50.000 3.92 0.00 36.58 2.32
2366 2731 0.109342 AGATAGGCTCGCCCCAAATG 59.891 55.000 3.92 0.00 36.58 2.32
2367 2732 1.518903 GATAGGCTCGCCCCAAATGC 61.519 60.000 3.92 0.00 36.58 3.56
2368 2733 2.983725 ATAGGCTCGCCCCAAATGCC 62.984 60.000 3.92 0.00 43.52 4.40
2371 2736 2.830370 CTCGCCCCAAATGCCCTC 60.830 66.667 0.00 0.00 0.00 4.30
2372 2737 3.338250 TCGCCCCAAATGCCCTCT 61.338 61.111 0.00 0.00 0.00 3.69
2373 2738 2.830370 CGCCCCAAATGCCCTCTC 60.830 66.667 0.00 0.00 0.00 3.20
2374 2739 2.360191 GCCCCAAATGCCCTCTCA 59.640 61.111 0.00 0.00 0.00 3.27
2375 2740 1.305213 GCCCCAAATGCCCTCTCAA 60.305 57.895 0.00 0.00 0.00 3.02
2376 2741 1.607801 GCCCCAAATGCCCTCTCAAC 61.608 60.000 0.00 0.00 0.00 3.18
2377 2742 0.251742 CCCCAAATGCCCTCTCAACA 60.252 55.000 0.00 0.00 0.00 3.33
2378 2743 1.620524 CCCCAAATGCCCTCTCAACAT 60.621 52.381 0.00 0.00 0.00 2.71
2379 2744 2.358090 CCCCAAATGCCCTCTCAACATA 60.358 50.000 0.00 0.00 0.00 2.29
2380 2745 3.364549 CCCAAATGCCCTCTCAACATAA 58.635 45.455 0.00 0.00 0.00 1.90
2381 2746 3.768757 CCCAAATGCCCTCTCAACATAAA 59.231 43.478 0.00 0.00 0.00 1.40
2382 2747 4.406649 CCCAAATGCCCTCTCAACATAAAT 59.593 41.667 0.00 0.00 0.00 1.40
2383 2748 5.452356 CCCAAATGCCCTCTCAACATAAATC 60.452 44.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.225791 GATTGGCGGCCAGGTTTTCC 62.226 60.000 22.59 3.98 33.81 3.13
120 121 7.360946 CCATGCACATGTCTACAGATCATAATG 60.361 40.741 9.63 0.00 37.11 1.90
121 122 6.653740 CCATGCACATGTCTACAGATCATAAT 59.346 38.462 9.63 0.00 37.11 1.28
122 123 5.993441 CCATGCACATGTCTACAGATCATAA 59.007 40.000 9.63 0.00 37.11 1.90
136 140 0.892755 AAGACTTGGCCATGCACATG 59.107 50.000 18.17 3.56 38.51 3.21
180 184 6.134535 ACCCAACCACAGAAAATAGTCATA 57.865 37.500 0.00 0.00 0.00 2.15
184 188 4.343814 CCAAACCCAACCACAGAAAATAGT 59.656 41.667 0.00 0.00 0.00 2.12
229 233 9.226345 GCATGCAGTTCATAGTTAATTAACTTC 57.774 33.333 30.41 17.43 45.19 3.01
273 277 2.896685 CCTCTAGATTCACCCTGCCTAG 59.103 54.545 0.00 0.00 0.00 3.02
302 306 7.807977 ACAACTGGCAGGATATTATTAACTG 57.192 36.000 20.34 0.00 0.00 3.16
447 451 1.917872 ACAGGTCTCTCTCACAGGAC 58.082 55.000 0.00 0.00 0.00 3.85
472 476 0.662374 AACCTAACACGAGACACGCG 60.662 55.000 3.53 3.53 46.94 6.01
487 491 7.645058 ATTAAGCATGTGCAATACTTAACCT 57.355 32.000 7.83 0.07 45.16 3.50
558 562 3.429207 GTGAGGTAGACGAAAGAAAGTGC 59.571 47.826 0.00 0.00 0.00 4.40
600 607 5.363868 CACCTACTGGTTATGGAGAAGATGA 59.636 44.000 0.00 0.00 46.05 2.92
692 699 0.960364 GTTCCATGGCCAAAGCGAGA 60.960 55.000 10.96 0.00 41.24 4.04
786 793 4.250464 AGCAATGCAGTTTGATGATTTGG 58.750 39.130 8.35 0.00 0.00 3.28
802 809 4.261578 ACCAATCCAACAGAAAGCAATG 57.738 40.909 0.00 0.00 0.00 2.82
813 820 6.405842 GGAATGAAGATACCAACCAATCCAAC 60.406 42.308 0.00 0.00 0.00 3.77
854 861 2.010497 CGAGATGCCGATAGCTAGCTA 58.990 52.381 26.09 26.09 44.23 3.32
855 862 0.808125 CGAGATGCCGATAGCTAGCT 59.192 55.000 23.12 23.12 44.23 3.32
856 863 0.179150 CCGAGATGCCGATAGCTAGC 60.179 60.000 6.62 6.62 44.23 3.42
857 864 1.454201 TCCGAGATGCCGATAGCTAG 58.546 55.000 0.00 0.00 44.23 3.42
858 865 1.813178 CTTCCGAGATGCCGATAGCTA 59.187 52.381 0.00 0.00 44.23 3.32
859 866 0.600557 CTTCCGAGATGCCGATAGCT 59.399 55.000 0.00 0.00 44.23 3.32
860 867 0.315568 ACTTCCGAGATGCCGATAGC 59.684 55.000 0.00 0.00 44.14 2.97
861 868 2.223829 ACAACTTCCGAGATGCCGATAG 60.224 50.000 0.00 0.00 0.00 2.08
862 869 1.754803 ACAACTTCCGAGATGCCGATA 59.245 47.619 0.00 0.00 0.00 2.92
863 870 0.537188 ACAACTTCCGAGATGCCGAT 59.463 50.000 0.00 0.00 0.00 4.18
864 871 0.108804 GACAACTTCCGAGATGCCGA 60.109 55.000 0.00 0.00 0.00 5.54
865 872 0.108615 AGACAACTTCCGAGATGCCG 60.109 55.000 0.00 0.00 0.00 5.69
866 873 1.363744 CAGACAACTTCCGAGATGCC 58.636 55.000 0.00 0.00 0.00 4.40
867 874 1.066858 TCCAGACAACTTCCGAGATGC 60.067 52.381 0.00 0.00 0.00 3.91
868 875 2.232452 ACTCCAGACAACTTCCGAGATG 59.768 50.000 0.00 0.00 0.00 2.90
869 876 2.494073 GACTCCAGACAACTTCCGAGAT 59.506 50.000 0.00 0.00 0.00 2.75
870 877 1.887198 GACTCCAGACAACTTCCGAGA 59.113 52.381 0.00 0.00 0.00 4.04
871 878 1.067495 GGACTCCAGACAACTTCCGAG 60.067 57.143 0.00 0.00 0.00 4.63
872 879 0.966920 GGACTCCAGACAACTTCCGA 59.033 55.000 0.00 0.00 0.00 4.55
873 880 0.037232 GGGACTCCAGACAACTTCCG 60.037 60.000 0.00 0.00 0.00 4.30
874 881 1.056660 TGGGACTCCAGACAACTTCC 58.943 55.000 0.00 0.00 38.32 3.46
875 882 2.930826 TTGGGACTCCAGACAACTTC 57.069 50.000 0.00 0.00 45.04 3.01
876 883 2.711009 TCATTGGGACTCCAGACAACTT 59.289 45.455 0.00 0.00 45.04 2.66
877 884 2.304180 CTCATTGGGACTCCAGACAACT 59.696 50.000 0.00 0.00 45.04 3.16
878 885 2.616510 CCTCATTGGGACTCCAGACAAC 60.617 54.545 0.00 0.00 45.04 3.32
879 886 1.630369 CCTCATTGGGACTCCAGACAA 59.370 52.381 0.00 0.00 45.04 3.18
880 887 1.279496 CCTCATTGGGACTCCAGACA 58.721 55.000 0.00 0.00 45.04 3.41
934 969 2.024177 TGCAGAATGGGAATTGGATGGA 60.024 45.455 0.00 0.00 35.86 3.41
939 974 2.029623 CTCCTGCAGAATGGGAATTGG 58.970 52.381 17.39 0.00 35.86 3.16
1342 1380 4.151121 TCTTCAATTTGTCCAGCAATCCA 58.849 39.130 0.00 0.00 36.89 3.41
1578 1626 3.119137 GCAAGTGTTGTTTTTCCCAGACT 60.119 43.478 0.00 0.00 0.00 3.24
1646 1694 0.596600 TTTGAGACACCGTCACGAGC 60.597 55.000 0.00 0.00 34.60 5.03
1736 1784 3.857665 GCATTTCGATAAGACGTGACTCA 59.142 43.478 0.00 0.00 34.70 3.41
2215 2580 1.883084 GGCGCAACGGGTCATCTAG 60.883 63.158 10.83 0.00 0.00 2.43
2217 2582 2.819984 ATTGGCGCAACGGGTCATCT 62.820 55.000 10.83 0.00 28.70 2.90
2221 2586 4.114997 CCATTGGCGCAACGGGTC 62.115 66.667 10.83 0.00 0.00 4.46
2240 2605 2.124942 CTCCCTCTCGCCCTTTGC 60.125 66.667 0.00 0.00 0.00 3.68
2241 2606 2.124942 GCTCCCTCTCGCCCTTTG 60.125 66.667 0.00 0.00 0.00 2.77
2242 2607 3.403558 GGCTCCCTCTCGCCCTTT 61.404 66.667 0.00 0.00 40.43 3.11
2243 2608 4.722535 TGGCTCCCTCTCGCCCTT 62.723 66.667 0.00 0.00 45.71 3.95
2244 2609 4.722535 TTGGCTCCCTCTCGCCCT 62.723 66.667 0.00 0.00 45.71 5.19
2245 2610 4.168291 CTTGGCTCCCTCTCGCCC 62.168 72.222 0.00 0.00 45.71 6.13
2246 2611 1.403687 ATACTTGGCTCCCTCTCGCC 61.404 60.000 0.00 0.00 46.46 5.54
2247 2612 0.466124 AATACTTGGCTCCCTCTCGC 59.534 55.000 0.00 0.00 0.00 5.03
2248 2613 1.757118 TCAATACTTGGCTCCCTCTCG 59.243 52.381 0.00 0.00 0.00 4.04
2249 2614 3.034635 TCTCAATACTTGGCTCCCTCTC 58.965 50.000 0.00 0.00 0.00 3.20
2250 2615 3.037549 CTCTCAATACTTGGCTCCCTCT 58.962 50.000 0.00 0.00 0.00 3.69
2251 2616 3.034635 TCTCTCAATACTTGGCTCCCTC 58.965 50.000 0.00 0.00 0.00 4.30
2252 2617 3.121929 TCTCTCAATACTTGGCTCCCT 57.878 47.619 0.00 0.00 0.00 4.20
2253 2618 3.914426 TTCTCTCAATACTTGGCTCCC 57.086 47.619 0.00 0.00 0.00 4.30
2254 2619 7.220030 TGAATATTCTCTCAATACTTGGCTCC 58.780 38.462 16.24 0.00 0.00 4.70
2255 2620 8.147058 TCTGAATATTCTCTCAATACTTGGCTC 58.853 37.037 16.24 0.00 0.00 4.70
2256 2621 7.930865 GTCTGAATATTCTCTCAATACTTGGCT 59.069 37.037 16.24 0.00 0.00 4.75
2257 2622 7.712639 TGTCTGAATATTCTCTCAATACTTGGC 59.287 37.037 16.24 0.00 0.00 4.52
2258 2623 9.039870 GTGTCTGAATATTCTCTCAATACTTGG 57.960 37.037 16.24 0.00 0.00 3.61
2259 2624 9.814899 AGTGTCTGAATATTCTCTCAATACTTG 57.185 33.333 16.24 0.00 0.00 3.16
2261 2626 9.194972 TGAGTGTCTGAATATTCTCTCAATACT 57.805 33.333 16.24 10.66 0.00 2.12
2262 2627 9.809096 TTGAGTGTCTGAATATTCTCTCAATAC 57.191 33.333 16.24 6.77 36.31 1.89
2264 2629 8.538701 ACTTGAGTGTCTGAATATTCTCTCAAT 58.461 33.333 23.16 16.38 39.05 2.57
2265 2630 7.901029 ACTTGAGTGTCTGAATATTCTCTCAA 58.099 34.615 22.43 22.43 38.01 3.02
2266 2631 7.395772 AGACTTGAGTGTCTGAATATTCTCTCA 59.604 37.037 16.24 16.07 44.64 3.27
2267 2632 7.771183 AGACTTGAGTGTCTGAATATTCTCTC 58.229 38.462 16.24 14.22 44.64 3.20
2268 2633 7.615365 AGAGACTTGAGTGTCTGAATATTCTCT 59.385 37.037 16.24 6.15 45.45 3.10
2269 2634 7.771183 AGAGACTTGAGTGTCTGAATATTCTC 58.229 38.462 16.24 5.28 45.45 2.87
2270 2635 7.716799 AGAGACTTGAGTGTCTGAATATTCT 57.283 36.000 16.24 0.00 45.45 2.40
2271 2636 8.682710 AGTAGAGACTTGAGTGTCTGAATATTC 58.317 37.037 18.03 8.60 46.42 1.75
2272 2637 8.465999 CAGTAGAGACTTGAGTGTCTGAATATT 58.534 37.037 18.03 0.00 46.42 1.28
2273 2638 7.416213 GCAGTAGAGACTTGAGTGTCTGAATAT 60.416 40.741 18.03 0.00 46.42 1.28
2274 2639 6.127869 GCAGTAGAGACTTGAGTGTCTGAATA 60.128 42.308 18.03 0.00 46.42 1.75
2275 2640 5.336372 GCAGTAGAGACTTGAGTGTCTGAAT 60.336 44.000 18.03 4.20 46.42 2.57
2276 2641 4.022762 GCAGTAGAGACTTGAGTGTCTGAA 60.023 45.833 18.03 0.00 46.42 3.02
2277 2642 3.504134 GCAGTAGAGACTTGAGTGTCTGA 59.496 47.826 18.03 3.27 46.42 3.27
2278 2643 3.505680 AGCAGTAGAGACTTGAGTGTCTG 59.494 47.826 18.03 6.41 46.42 3.51
2280 2645 3.425625 CGAGCAGTAGAGACTTGAGTGTC 60.426 52.174 0.34 0.34 38.47 3.67
2281 2646 2.486203 CGAGCAGTAGAGACTTGAGTGT 59.514 50.000 0.00 0.00 31.73 3.55
2282 2647 2.486203 ACGAGCAGTAGAGACTTGAGTG 59.514 50.000 0.00 0.00 31.73 3.51
2283 2648 2.785562 ACGAGCAGTAGAGACTTGAGT 58.214 47.619 0.00 0.00 31.73 3.41
2284 2649 3.685272 TGTACGAGCAGTAGAGACTTGAG 59.315 47.826 0.00 0.00 35.72 3.02
2285 2650 3.671716 TGTACGAGCAGTAGAGACTTGA 58.328 45.455 0.00 0.00 35.72 3.02
2286 2651 4.624336 ATGTACGAGCAGTAGAGACTTG 57.376 45.455 0.00 0.00 35.72 3.16
2287 2652 5.672503 TCTATGTACGAGCAGTAGAGACTT 58.327 41.667 0.00 0.00 35.72 3.01
2288 2653 5.279255 TCTATGTACGAGCAGTAGAGACT 57.721 43.478 0.00 0.00 35.72 3.24
2289 2654 5.524646 AGTTCTATGTACGAGCAGTAGAGAC 59.475 44.000 0.00 0.91 35.72 3.36
2290 2655 5.672503 AGTTCTATGTACGAGCAGTAGAGA 58.327 41.667 0.00 0.00 35.72 3.10
2291 2656 5.524281 TGAGTTCTATGTACGAGCAGTAGAG 59.476 44.000 0.00 0.00 35.72 2.43
2292 2657 5.425630 TGAGTTCTATGTACGAGCAGTAGA 58.574 41.667 0.00 0.00 35.72 2.59
2293 2658 5.736486 TGAGTTCTATGTACGAGCAGTAG 57.264 43.478 0.00 0.00 35.72 2.57
2294 2659 5.820947 TGATGAGTTCTATGTACGAGCAGTA 59.179 40.000 0.00 0.00 0.00 2.74
2295 2660 4.640647 TGATGAGTTCTATGTACGAGCAGT 59.359 41.667 0.00 0.00 0.00 4.40
2296 2661 5.175090 TGATGAGTTCTATGTACGAGCAG 57.825 43.478 0.00 0.00 0.00 4.24
2297 2662 5.576447 TTGATGAGTTCTATGTACGAGCA 57.424 39.130 0.00 0.00 0.00 4.26
2298 2663 8.642885 CATATTTGATGAGTTCTATGTACGAGC 58.357 37.037 0.00 0.00 0.00 5.03
2299 2664 9.133627 CCATATTTGATGAGTTCTATGTACGAG 57.866 37.037 0.00 0.00 0.00 4.18
2300 2665 7.598869 GCCATATTTGATGAGTTCTATGTACGA 59.401 37.037 0.00 0.00 0.00 3.43
2301 2666 7.600375 AGCCATATTTGATGAGTTCTATGTACG 59.400 37.037 0.00 0.00 0.00 3.67
2302 2667 8.715998 CAGCCATATTTGATGAGTTCTATGTAC 58.284 37.037 0.00 0.00 0.00 2.90
2303 2668 7.879677 CCAGCCATATTTGATGAGTTCTATGTA 59.120 37.037 0.00 0.00 0.00 2.29
2304 2669 6.713903 CCAGCCATATTTGATGAGTTCTATGT 59.286 38.462 0.00 0.00 0.00 2.29
2305 2670 6.938596 TCCAGCCATATTTGATGAGTTCTATG 59.061 38.462 0.00 0.00 0.00 2.23
2306 2671 7.083062 TCCAGCCATATTTGATGAGTTCTAT 57.917 36.000 0.00 0.00 0.00 1.98
2307 2672 6.499106 TCCAGCCATATTTGATGAGTTCTA 57.501 37.500 0.00 0.00 0.00 2.10
2308 2673 5.378230 TCCAGCCATATTTGATGAGTTCT 57.622 39.130 0.00 0.00 0.00 3.01
2309 2674 6.489361 AGAATCCAGCCATATTTGATGAGTTC 59.511 38.462 0.00 0.00 0.00 3.01
2310 2675 6.264744 CAGAATCCAGCCATATTTGATGAGTT 59.735 38.462 0.00 0.00 0.00 3.01
2311 2676 5.768662 CAGAATCCAGCCATATTTGATGAGT 59.231 40.000 0.00 0.00 0.00 3.41
2312 2677 5.183331 CCAGAATCCAGCCATATTTGATGAG 59.817 44.000 0.00 0.00 0.00 2.90
2313 2678 5.074804 CCAGAATCCAGCCATATTTGATGA 58.925 41.667 0.00 0.00 0.00 2.92
2314 2679 4.831155 ACCAGAATCCAGCCATATTTGATG 59.169 41.667 0.00 0.00 0.00 3.07
2315 2680 5.070823 ACCAGAATCCAGCCATATTTGAT 57.929 39.130 0.00 0.00 0.00 2.57
2316 2681 4.166725 AGACCAGAATCCAGCCATATTTGA 59.833 41.667 0.00 0.00 0.00 2.69
2317 2682 4.277672 CAGACCAGAATCCAGCCATATTTG 59.722 45.833 0.00 0.00 0.00 2.32
2318 2683 4.467769 CAGACCAGAATCCAGCCATATTT 58.532 43.478 0.00 0.00 0.00 1.40
2319 2684 3.181436 CCAGACCAGAATCCAGCCATATT 60.181 47.826 0.00 0.00 0.00 1.28
2320 2685 2.374504 CCAGACCAGAATCCAGCCATAT 59.625 50.000 0.00 0.00 0.00 1.78
2321 2686 1.770658 CCAGACCAGAATCCAGCCATA 59.229 52.381 0.00 0.00 0.00 2.74
2322 2687 0.549950 CCAGACCAGAATCCAGCCAT 59.450 55.000 0.00 0.00 0.00 4.40
2323 2688 0.547471 TCCAGACCAGAATCCAGCCA 60.547 55.000 0.00 0.00 0.00 4.75
2324 2689 0.620556 TTCCAGACCAGAATCCAGCC 59.379 55.000 0.00 0.00 0.00 4.85
2325 2690 1.280421 ACTTCCAGACCAGAATCCAGC 59.720 52.381 0.00 0.00 0.00 4.85
2326 2691 3.710209 AACTTCCAGACCAGAATCCAG 57.290 47.619 0.00 0.00 0.00 3.86
2327 2692 4.425772 TCTAACTTCCAGACCAGAATCCA 58.574 43.478 0.00 0.00 0.00 3.41
2328 2693 5.622346 ATCTAACTTCCAGACCAGAATCC 57.378 43.478 0.00 0.00 0.00 3.01
2329 2694 6.740122 GCCTATCTAACTTCCAGACCAGAATC 60.740 46.154 0.00 0.00 0.00 2.52
2330 2695 5.071115 GCCTATCTAACTTCCAGACCAGAAT 59.929 44.000 0.00 0.00 0.00 2.40
2331 2696 4.406003 GCCTATCTAACTTCCAGACCAGAA 59.594 45.833 0.00 0.00 0.00 3.02
2332 2697 3.961408 GCCTATCTAACTTCCAGACCAGA 59.039 47.826 0.00 0.00 0.00 3.86
2333 2698 3.964031 AGCCTATCTAACTTCCAGACCAG 59.036 47.826 0.00 0.00 0.00 4.00
2334 2699 3.961408 GAGCCTATCTAACTTCCAGACCA 59.039 47.826 0.00 0.00 0.00 4.02
2335 2700 3.004944 CGAGCCTATCTAACTTCCAGACC 59.995 52.174 0.00 0.00 0.00 3.85
2336 2701 3.551250 GCGAGCCTATCTAACTTCCAGAC 60.551 52.174 0.00 0.00 0.00 3.51
2337 2702 2.623889 GCGAGCCTATCTAACTTCCAGA 59.376 50.000 0.00 0.00 0.00 3.86
2338 2703 2.288518 GGCGAGCCTATCTAACTTCCAG 60.289 54.545 6.90 0.00 0.00 3.86
2339 2704 1.687123 GGCGAGCCTATCTAACTTCCA 59.313 52.381 6.90 0.00 0.00 3.53
2340 2705 1.001068 GGGCGAGCCTATCTAACTTCC 59.999 57.143 14.33 0.00 36.10 3.46
2341 2706 1.001068 GGGGCGAGCCTATCTAACTTC 59.999 57.143 14.33 0.00 36.10 3.01
2342 2707 1.049402 GGGGCGAGCCTATCTAACTT 58.951 55.000 14.33 0.00 36.10 2.66
2343 2708 0.105658 TGGGGCGAGCCTATCTAACT 60.106 55.000 14.33 0.00 36.10 2.24
2344 2709 0.756903 TTGGGGCGAGCCTATCTAAC 59.243 55.000 14.33 0.00 36.10 2.34
2345 2710 1.502690 TTTGGGGCGAGCCTATCTAA 58.497 50.000 14.33 5.07 36.10 2.10
2346 2711 1.347707 CATTTGGGGCGAGCCTATCTA 59.652 52.381 14.33 0.00 36.10 1.98
2347 2712 0.109342 CATTTGGGGCGAGCCTATCT 59.891 55.000 14.33 0.00 36.10 1.98
2348 2713 1.518903 GCATTTGGGGCGAGCCTATC 61.519 60.000 14.33 5.08 36.10 2.08
2349 2714 1.529244 GCATTTGGGGCGAGCCTAT 60.529 57.895 14.33 0.54 36.10 2.57
2350 2715 2.124320 GCATTTGGGGCGAGCCTA 60.124 61.111 14.33 0.81 36.10 3.93
2354 2719 2.830370 GAGGGCATTTGGGGCGAG 60.830 66.667 0.00 0.00 0.00 5.03
2355 2720 3.338250 AGAGGGCATTTGGGGCGA 61.338 61.111 0.00 0.00 0.00 5.54
2356 2721 2.830370 GAGAGGGCATTTGGGGCG 60.830 66.667 0.00 0.00 0.00 6.13
2357 2722 1.305213 TTGAGAGGGCATTTGGGGC 60.305 57.895 0.00 0.00 0.00 5.80
2358 2723 0.251742 TGTTGAGAGGGCATTTGGGG 60.252 55.000 0.00 0.00 0.00 4.96
2359 2724 1.856629 ATGTTGAGAGGGCATTTGGG 58.143 50.000 0.00 0.00 0.00 4.12
2360 2725 5.594926 GATTTATGTTGAGAGGGCATTTGG 58.405 41.667 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.