Multiple sequence alignment - TraesCS4B01G356800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G356800 chr4B 100.000 5588 0 0 1 5588 647621694 647627281 0.000000e+00 10320.0
1 TraesCS4B01G356800 chr4B 97.826 46 1 0 1432 1477 586464020 586463975 4.640000e-11 80.5
2 TraesCS4B01G356800 chr5A 91.850 1914 107 22 1483 3368 687149355 687151247 0.000000e+00 2625.0
3 TraesCS4B01G356800 chr5A 90.048 1045 78 13 420 1441 687148315 687149356 0.000000e+00 1330.0
4 TraesCS4B01G356800 chr5A 82.754 1467 161 47 4191 5588 687152042 687153485 0.000000e+00 1223.0
5 TraesCS4B01G356800 chr5A 84.658 717 48 30 3422 4126 687151269 687151935 0.000000e+00 658.0
6 TraesCS4B01G356800 chr5A 78.431 408 66 12 5192 5588 687160935 687161331 4.320000e-61 246.0
7 TraesCS4B01G356800 chr4D 90.426 1901 131 37 1483 3368 502708906 502710770 0.000000e+00 2455.0
8 TraesCS4B01G356800 chr4D 82.414 1450 149 48 4191 5588 502711578 502712973 0.000000e+00 1168.0
9 TraesCS4B01G356800 chr4D 89.581 931 49 20 528 1443 502708012 502708909 0.000000e+00 1138.0
10 TraesCS4B01G356800 chr4D 84.100 717 64 34 3422 4125 502710795 502711474 0.000000e+00 647.0
11 TraesCS4B01G356800 chr4D 83.375 397 25 13 1 385 502707526 502707893 4.170000e-86 329.0
12 TraesCS4B01G356800 chr4D 93.478 46 2 1 3111 3156 44050488 44050444 3.610000e-07 67.6
13 TraesCS4B01G356800 chr2A 78.788 891 173 11 2219 3104 508031538 508032417 8.070000e-163 584.0
14 TraesCS4B01G356800 chr2A 71.397 909 190 56 2230 3100 723061458 723062334 2.070000e-39 174.0
15 TraesCS4B01G356800 chr2A 72.109 441 93 20 2228 2650 777624834 777624406 7.660000e-19 106.0
16 TraesCS4B01G356800 chr2A 95.556 45 2 0 3112 3156 112748120 112748164 7.770000e-09 73.1
17 TraesCS4B01G356800 chr3D 77.582 397 81 5 2227 2622 5649396 5649785 3.370000e-57 233.0
18 TraesCS4B01G356800 chr5D 76.500 400 82 11 2226 2622 557948155 557947765 2.040000e-49 207.0
19 TraesCS4B01G356800 chr5D 92.857 42 3 0 3112 3153 5633638 5633679 1.680000e-05 62.1
20 TraesCS4B01G356800 chr5D 90.698 43 4 0 3112 3154 42040552 42040510 2.170000e-04 58.4
21 TraesCS4B01G356800 chr5D 96.970 33 1 0 3124 3156 438623529 438623497 7.820000e-04 56.5
22 TraesCS4B01G356800 chr3A 76.648 364 75 7 2226 2587 15619980 15619625 5.710000e-45 193.0
23 TraesCS4B01G356800 chr3A 97.778 45 1 0 1433 1477 729183851 729183895 1.670000e-10 78.7
24 TraesCS4B01G356800 chr3B 77.011 348 68 9 2227 2572 27872825 27873162 7.390000e-44 189.0
25 TraesCS4B01G356800 chr3B 75.641 390 87 5 2230 2618 12304970 12304588 2.660000e-43 187.0
26 TraesCS4B01G356800 chrUn 85.401 137 20 0 2230 2366 35833962 35833826 5.840000e-30 143.0
27 TraesCS4B01G356800 chrUn 89.062 64 3 4 1416 1477 135090826 135090765 6.000000e-10 76.8
28 TraesCS4B01G356800 chrUn 89.062 64 3 4 1416 1477 152687682 152687621 6.000000e-10 76.8
29 TraesCS4B01G356800 chr2D 73.864 352 69 14 2221 2558 635164346 635164688 9.830000e-23 119.0
30 TraesCS4B01G356800 chr2D 73.900 341 66 21 2230 2557 588453158 588453488 1.270000e-21 115.0
31 TraesCS4B01G356800 chr7D 83.200 125 17 4 2969 3091 4794787 4794909 1.650000e-20 111.0
32 TraesCS4B01G356800 chr4A 81.818 132 20 4 2962 3091 738888596 738888467 2.130000e-19 108.0
33 TraesCS4B01G356800 chr4A 88.889 45 4 1 3112 3156 476991184 476991227 3.000000e-03 54.7
34 TraesCS4B01G356800 chr2B 89.706 68 7 0 2494 2561 779150981 779150914 2.770000e-13 87.9
35 TraesCS4B01G356800 chr1A 92.593 54 4 0 1431 1484 13458366 13458313 1.670000e-10 78.7
36 TraesCS4B01G356800 chr1A 91.071 56 3 2 1439 1494 427521787 427521840 2.160000e-09 75.0
37 TraesCS4B01G356800 chr1A 88.889 45 5 0 3112 3156 137413141 137413185 7.820000e-04 56.5
38 TraesCS4B01G356800 chr7B 93.878 49 2 1 1430 1477 299409700 299409652 7.770000e-09 73.1
39 TraesCS4B01G356800 chr5B 89.655 58 5 1 1421 1477 669713610 669713667 7.770000e-09 73.1
40 TraesCS4B01G356800 chr5B 85.294 68 6 3 1414 1477 317294210 317294277 3.610000e-07 67.6
41 TraesCS4B01G356800 chr5B 100.000 31 0 0 3126 3156 559767084 559767114 2.170000e-04 58.4
42 TraesCS4B01G356800 chr6D 96.970 33 0 1 3124 3156 94279336 94279367 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G356800 chr4B 647621694 647627281 5587 False 10320.0 10320 100.0000 1 5588 1 chr4B.!!$F1 5587
1 TraesCS4B01G356800 chr5A 687148315 687153485 5170 False 1459.0 2625 87.3275 420 5588 4 chr5A.!!$F2 5168
2 TraesCS4B01G356800 chr4D 502707526 502712973 5447 False 1147.4 2455 85.9792 1 5588 5 chr4D.!!$F1 5587
3 TraesCS4B01G356800 chr2A 508031538 508032417 879 False 584.0 584 78.7880 2219 3104 1 chr2A.!!$F2 885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 429 0.179100 CAGGCTCATCTACACCCGTG 60.179 60.000 0.00 0.0 0.00 4.94 F
827 907 0.387239 AAAACGAAGCTGCCGATTGC 60.387 50.000 14.59 0.0 41.77 3.56 F
1685 1799 1.000955 GTCGAGCTGGAGGTTCAAAGA 59.999 52.381 0.00 0.0 0.00 2.52 F
3314 3490 0.034896 GTGGGTGACAAGGTCGTCAT 59.965 55.000 0.00 0.0 46.98 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1799 0.109458 TCGTCGTGCTACTGCGAAAT 60.109 50.0 0.0 0.0 43.34 2.17 R
1867 1986 0.393077 AGACACCCAAAGAGACACGG 59.607 55.0 0.0 0.0 0.00 4.94 R
3631 3818 0.179037 AGGATGATGCGGATGTGTGG 60.179 55.0 0.0 0.0 0.00 4.17 R
5057 5379 0.247460 TAGCAGCTTGTCGTGCATCT 59.753 50.0 0.0 0.0 42.47 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.509929 GAACGTACGCTTGGTTGGAC 59.490 55.000 16.72 0.00 0.00 4.02
75 76 4.011058 ACACGTTTTTGTTTCTTCTCCG 57.989 40.909 0.00 0.00 0.00 4.63
78 79 3.311596 ACGTTTTTGTTTCTTCTCCGGAG 59.688 43.478 26.32 26.32 0.00 4.63
79 80 3.629058 GTTTTTGTTTCTTCTCCGGAGC 58.371 45.455 27.39 12.01 0.00 4.70
80 81 2.631160 TTTGTTTCTTCTCCGGAGCA 57.369 45.000 27.39 15.98 0.00 4.26
81 82 2.859165 TTGTTTCTTCTCCGGAGCAT 57.141 45.000 27.39 0.00 0.00 3.79
100 101 8.284665 GGAGCATGCTTGTTCAGATGAAATCA 62.285 42.308 23.61 0.00 37.79 2.57
101 102 9.652379 GGAGCATGCTTGTTCAGATGAAATCAA 62.652 40.741 23.61 0.00 37.79 2.57
113 114 5.268118 GATGAAATCAATGGGGGACTTTC 57.732 43.478 0.00 0.00 44.70 2.62
118 119 2.875296 TCAATGGGGGACTTTCTTGTG 58.125 47.619 0.00 0.00 0.00 3.33
126 127 3.009584 GGGGACTTTCTTGTGAGGATTCT 59.990 47.826 0.00 0.00 0.00 2.40
165 166 8.637986 TGCATTTTTCCACAGTAAAATAAGACT 58.362 29.630 0.00 0.00 32.93 3.24
171 172 7.739498 TCCACAGTAAAATAAGACTGAAACC 57.261 36.000 8.91 0.00 44.88 3.27
173 174 7.227910 TCCACAGTAAAATAAGACTGAAACCAC 59.772 37.037 8.91 0.00 44.88 4.16
260 272 1.511850 TTCGGTGCTGACATGACAAG 58.488 50.000 0.00 0.00 0.00 3.16
265 277 2.430465 GTGCTGACATGACAAGGACAT 58.570 47.619 0.00 0.00 0.00 3.06
266 278 2.161012 GTGCTGACATGACAAGGACATG 59.839 50.000 0.00 0.00 46.96 3.21
269 281 3.005554 CTGACATGACAAGGACATGACC 58.994 50.000 13.89 6.05 45.22 4.02
270 282 2.371510 TGACATGACAAGGACATGACCA 59.628 45.455 16.63 9.02 45.22 4.02
271 283 3.009363 TGACATGACAAGGACATGACCAT 59.991 43.478 16.63 1.04 45.22 3.55
299 311 2.489329 CGCCTCATGACCAAGTTGAATT 59.511 45.455 3.87 0.00 0.00 2.17
311 323 6.179756 ACCAAGTTGAATTTTCTGGCTTTTT 58.820 32.000 3.87 0.00 0.00 1.94
312 324 7.334858 ACCAAGTTGAATTTTCTGGCTTTTTA 58.665 30.769 3.87 0.00 0.00 1.52
313 325 7.495606 ACCAAGTTGAATTTTCTGGCTTTTTAG 59.504 33.333 3.87 0.00 0.00 1.85
314 326 7.495606 CCAAGTTGAATTTTCTGGCTTTTTAGT 59.504 33.333 3.87 0.00 0.00 2.24
315 327 8.882736 CAAGTTGAATTTTCTGGCTTTTTAGTT 58.117 29.630 0.00 0.00 0.00 2.24
316 328 9.448438 AAGTTGAATTTTCTGGCTTTTTAGTTT 57.552 25.926 0.00 0.00 0.00 2.66
317 329 9.448438 AGTTGAATTTTCTGGCTTTTTAGTTTT 57.552 25.926 0.00 0.00 0.00 2.43
318 330 9.702726 GTTGAATTTTCTGGCTTTTTAGTTTTC 57.297 29.630 0.00 0.00 0.00 2.29
319 331 8.125728 TGAATTTTCTGGCTTTTTAGTTTTCG 57.874 30.769 0.00 0.00 0.00 3.46
320 332 7.223777 TGAATTTTCTGGCTTTTTAGTTTTCGG 59.776 33.333 0.00 0.00 0.00 4.30
343 355 1.682854 AGTTGCAAGACATGTTGGTGG 59.317 47.619 0.00 0.00 0.00 4.61
345 357 1.608055 TGCAAGACATGTTGGTGGAG 58.392 50.000 0.00 0.00 0.00 3.86
349 361 2.751259 CAAGACATGTTGGTGGAGATGG 59.249 50.000 0.00 0.00 0.00 3.51
351 363 0.405198 ACATGTTGGTGGAGATGGCA 59.595 50.000 0.00 0.00 0.00 4.92
362 374 6.194235 TGGTGGAGATGGCAAAATAACTTAT 58.806 36.000 0.00 0.00 0.00 1.73
363 375 6.667414 TGGTGGAGATGGCAAAATAACTTATT 59.333 34.615 0.00 0.00 0.00 1.40
364 376 7.836685 TGGTGGAGATGGCAAAATAACTTATTA 59.163 33.333 0.00 0.00 0.00 0.98
367 379 7.779798 TGGAGATGGCAAAATAACTTATTAGCT 59.220 33.333 14.03 0.00 32.90 3.32
368 380 8.078596 GGAGATGGCAAAATAACTTATTAGCTG 58.921 37.037 0.00 6.43 32.90 4.24
369 381 7.428826 AGATGGCAAAATAACTTATTAGCTGC 58.571 34.615 0.00 12.69 32.90 5.25
371 383 7.111247 TGGCAAAATAACTTATTAGCTGCAT 57.889 32.000 16.99 0.00 33.52 3.96
372 384 8.231692 TGGCAAAATAACTTATTAGCTGCATA 57.768 30.769 16.99 0.00 33.52 3.14
373 385 8.690884 TGGCAAAATAACTTATTAGCTGCATAA 58.309 29.630 16.99 0.00 33.52 1.90
374 386 9.528018 GGCAAAATAACTTATTAGCTGCATAAA 57.472 29.630 16.99 0.00 33.52 1.40
382 394 9.618890 AACTTATTAGCTGCATAAATGAGAGAA 57.381 29.630 15.77 0.67 0.00 2.87
383 395 9.050601 ACTTATTAGCTGCATAAATGAGAGAAC 57.949 33.333 15.77 0.00 0.00 3.01
384 396 8.962884 TTATTAGCTGCATAAATGAGAGAACA 57.037 30.769 1.02 0.00 0.00 3.18
385 397 6.915544 TTAGCTGCATAAATGAGAGAACAG 57.084 37.500 1.02 0.00 0.00 3.16
386 398 3.950078 GCTGCATAAATGAGAGAACAGC 58.050 45.455 0.00 0.00 42.00 4.40
387 399 3.545624 GCTGCATAAATGAGAGAACAGCG 60.546 47.826 0.00 0.00 39.76 5.18
388 400 3.860641 TGCATAAATGAGAGAACAGCGA 58.139 40.909 0.00 0.00 0.00 4.93
389 401 4.445453 TGCATAAATGAGAGAACAGCGAT 58.555 39.130 0.00 0.00 0.00 4.58
390 402 4.877823 TGCATAAATGAGAGAACAGCGATT 59.122 37.500 0.00 0.00 0.00 3.34
391 403 5.007039 TGCATAAATGAGAGAACAGCGATTC 59.993 40.000 0.00 0.00 0.00 2.52
392 404 5.664262 CATAAATGAGAGAACAGCGATTCG 58.336 41.667 0.62 0.62 33.57 3.34
393 405 3.510388 AATGAGAGAACAGCGATTCGA 57.490 42.857 10.88 0.00 33.57 3.71
394 406 3.724508 ATGAGAGAACAGCGATTCGAT 57.275 42.857 10.88 0.00 33.57 3.59
400 412 3.327148 CAGCGATTCGATGCCCAG 58.673 61.111 11.72 0.00 36.27 4.45
401 413 2.109799 AGCGATTCGATGCCCAGG 59.890 61.111 10.88 0.00 0.00 4.45
402 414 3.654020 GCGATTCGATGCCCAGGC 61.654 66.667 10.88 0.38 42.35 4.85
403 415 2.109799 CGATTCGATGCCCAGGCT 59.890 61.111 10.58 0.00 42.51 4.58
404 416 1.958205 CGATTCGATGCCCAGGCTC 60.958 63.158 10.58 4.33 42.51 4.70
405 417 1.146930 GATTCGATGCCCAGGCTCA 59.853 57.895 10.58 0.00 42.51 4.26
406 418 0.250640 GATTCGATGCCCAGGCTCAT 60.251 55.000 10.58 1.49 42.51 2.90
407 419 0.250640 ATTCGATGCCCAGGCTCATC 60.251 55.000 10.58 9.67 42.51 2.92
408 420 1.340399 TTCGATGCCCAGGCTCATCT 61.340 55.000 10.58 0.00 42.51 2.90
409 421 0.469892 TCGATGCCCAGGCTCATCTA 60.470 55.000 10.58 1.10 42.51 1.98
410 422 0.320247 CGATGCCCAGGCTCATCTAC 60.320 60.000 10.58 0.00 42.51 2.59
411 423 0.761187 GATGCCCAGGCTCATCTACA 59.239 55.000 10.58 0.00 42.51 2.74
412 424 0.471617 ATGCCCAGGCTCATCTACAC 59.528 55.000 10.58 0.00 42.51 2.90
413 425 1.147153 GCCCAGGCTCATCTACACC 59.853 63.158 0.08 0.00 38.26 4.16
414 426 1.832912 CCCAGGCTCATCTACACCC 59.167 63.158 0.00 0.00 0.00 4.61
415 427 1.443407 CCAGGCTCATCTACACCCG 59.557 63.158 0.00 0.00 0.00 5.28
416 428 1.330655 CCAGGCTCATCTACACCCGT 61.331 60.000 0.00 0.00 0.00 5.28
417 429 0.179100 CAGGCTCATCTACACCCGTG 60.179 60.000 0.00 0.00 0.00 4.94
418 430 1.521681 GGCTCATCTACACCCGTGC 60.522 63.158 0.00 0.00 0.00 5.34
432 444 3.252215 CACCCGTGCTGAAGAAAACAATA 59.748 43.478 0.00 0.00 0.00 1.90
434 446 3.252215 CCCGTGCTGAAGAAAACAATACA 59.748 43.478 0.00 0.00 0.00 2.29
455 467 2.929641 TGTGCAGTGTCCAATTTCTGA 58.070 42.857 0.00 0.00 0.00 3.27
465 477 4.884744 TGTCCAATTTCTGACTTTTCCGAA 59.115 37.500 0.00 0.00 32.67 4.30
484 497 6.090129 TCCGAAAAGTATTGCTAACATTTGC 58.910 36.000 0.00 0.00 0.00 3.68
485 498 5.861251 CCGAAAAGTATTGCTAACATTTGCA 59.139 36.000 0.00 0.00 37.15 4.08
508 521 2.455674 TCATGCTCCGTATATGGCAC 57.544 50.000 6.06 1.41 37.52 5.01
510 523 0.670546 ATGCTCCGTATATGGCACGC 60.671 55.000 6.06 9.01 38.07 5.34
525 538 1.268999 GCACGCCAGTTGTTTTCATCA 60.269 47.619 0.00 0.00 0.00 3.07
530 543 2.796593 GCCAGTTGTTTTCATCAACAGC 59.203 45.455 10.59 8.97 44.97 4.40
571 632 6.321848 TGAAAACTTCGGAAGGGAATAAAC 57.678 37.500 20.97 5.67 0.00 2.01
573 634 2.981898 ACTTCGGAAGGGAATAAACCG 58.018 47.619 20.97 0.00 44.09 4.44
592 653 1.390463 CGCAGCTTTACCGAGAAAGAC 59.610 52.381 11.76 4.94 38.48 3.01
597 658 5.220491 GCAGCTTTACCGAGAAAGACATTAG 60.220 44.000 11.76 0.00 38.48 1.73
678 739 6.688578 AGTGATATTATTTAGTGCCGTCGAT 58.311 36.000 0.00 0.00 0.00 3.59
679 740 7.823665 AGTGATATTATTTAGTGCCGTCGATA 58.176 34.615 0.00 0.00 0.00 2.92
680 741 8.467598 AGTGATATTATTTAGTGCCGTCGATAT 58.532 33.333 0.00 0.00 0.00 1.63
681 742 8.744011 GTGATATTATTTAGTGCCGTCGATATC 58.256 37.037 0.00 0.00 0.00 1.63
682 743 7.642586 TGATATTATTTAGTGCCGTCGATATCG 59.357 37.037 19.14 19.14 41.45 2.92
722 795 7.980742 AACTCGACCAAAGTTAAAAATGTTC 57.019 32.000 0.00 0.00 35.25 3.18
724 797 7.193595 ACTCGACCAAAGTTAAAAATGTTCAG 58.806 34.615 0.00 0.00 0.00 3.02
772 846 4.447138 TGTAAACTTGACCCTTGACCAT 57.553 40.909 0.00 0.00 0.00 3.55
827 907 0.387239 AAAACGAAGCTGCCGATTGC 60.387 50.000 14.59 0.00 41.77 3.56
982 1076 4.862823 CCCCCTCCCTCGACCCTC 62.863 77.778 0.00 0.00 0.00 4.30
1044 1142 4.492160 CCATTGGCGCTGCTGCTG 62.492 66.667 14.03 8.34 36.97 4.41
1164 1262 1.218316 GACCGGCTACCACTTCCAG 59.782 63.158 0.00 0.00 0.00 3.86
1198 1296 2.363038 TGGATCAACGGTAAGATACCCG 59.637 50.000 0.00 0.00 46.27 5.28
1214 1312 3.123620 CGCTGCTCTTGCTGGACC 61.124 66.667 0.00 0.00 40.48 4.46
1222 1320 1.554160 CTCTTGCTGGACCTGTCTGAT 59.446 52.381 0.00 0.00 0.00 2.90
1249 1351 1.766143 CTGTTTATGCTCCGCTCCGC 61.766 60.000 0.00 0.00 0.00 5.54
1336 1446 5.163903 CGTAGACAGAGAGATATGTCCATCG 60.164 48.000 0.00 2.05 45.61 3.84
1388 1499 4.090588 TTCGTCATGGGGGCGGAC 62.091 66.667 0.00 0.00 0.00 4.79
1409 1520 3.126858 ACACAACATCACAGACAACACAC 59.873 43.478 0.00 0.00 0.00 3.82
1449 1560 9.186323 CAAGAAAGATAATACATACTCACTCCG 57.814 37.037 0.00 0.00 0.00 4.63
1450 1561 8.466617 AGAAAGATAATACATACTCACTCCGT 57.533 34.615 0.00 0.00 0.00 4.69
1451 1562 8.569641 AGAAAGATAATACATACTCACTCCGTC 58.430 37.037 0.00 0.00 0.00 4.79
1452 1563 6.821031 AGATAATACATACTCACTCCGTCC 57.179 41.667 0.00 0.00 0.00 4.79
1453 1564 5.711036 AGATAATACATACTCACTCCGTCCC 59.289 44.000 0.00 0.00 0.00 4.46
1454 1565 2.812836 TACATACTCACTCCGTCCCA 57.187 50.000 0.00 0.00 0.00 4.37
1455 1566 2.160721 ACATACTCACTCCGTCCCAT 57.839 50.000 0.00 0.00 0.00 4.00
1456 1567 3.308035 ACATACTCACTCCGTCCCATA 57.692 47.619 0.00 0.00 0.00 2.74
1457 1568 3.638860 ACATACTCACTCCGTCCCATAA 58.361 45.455 0.00 0.00 0.00 1.90
1458 1569 4.223953 ACATACTCACTCCGTCCCATAAT 58.776 43.478 0.00 0.00 0.00 1.28
1459 1570 4.039245 ACATACTCACTCCGTCCCATAATG 59.961 45.833 0.00 0.00 0.00 1.90
1460 1571 2.467880 ACTCACTCCGTCCCATAATGT 58.532 47.619 0.00 0.00 0.00 2.71
1461 1572 3.638860 ACTCACTCCGTCCCATAATGTA 58.361 45.455 0.00 0.00 0.00 2.29
1462 1573 4.028131 ACTCACTCCGTCCCATAATGTAA 58.972 43.478 0.00 0.00 0.00 2.41
1463 1574 4.099573 ACTCACTCCGTCCCATAATGTAAG 59.900 45.833 0.00 0.00 0.00 2.34
1464 1575 4.283337 TCACTCCGTCCCATAATGTAAGA 58.717 43.478 0.00 0.00 0.00 2.10
1465 1576 4.098960 TCACTCCGTCCCATAATGTAAGAC 59.901 45.833 0.00 0.00 0.00 3.01
1467 1578 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1468 1579 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
1469 1580 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
1470 1581 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
1471 1582 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1588 1700 2.399611 CGAGGGCGCGTCAAAATC 59.600 61.111 14.93 3.53 0.00 2.17
1591 1703 2.097728 GGGCGCGTCAAAATCGAC 59.902 61.111 14.93 0.00 0.00 4.20
1630 1744 1.479730 CCGTGTTAGTTAGGGAGTCCC 59.520 57.143 21.81 21.81 45.90 4.46
1641 1755 2.035442 GGAGTCCCGCAGCTGTTTC 61.035 63.158 16.64 4.39 0.00 2.78
1650 1764 1.196354 CGCAGCTGTTTCCTTCTTCTG 59.804 52.381 16.64 0.00 0.00 3.02
1685 1799 1.000955 GTCGAGCTGGAGGTTCAAAGA 59.999 52.381 0.00 0.00 0.00 2.52
1698 1812 3.188460 GGTTCAAAGATTTCGCAGTAGCA 59.812 43.478 0.00 0.00 42.27 3.49
1917 2037 0.523072 CTGGGACGGCAAAACTCATG 59.477 55.000 0.00 0.00 0.00 3.07
1920 2040 1.463674 GGACGGCAAAACTCATGGAT 58.536 50.000 0.00 0.00 0.00 3.41
1958 2078 1.673033 CGACTTCTGCGACCCATTTCT 60.673 52.381 0.00 0.00 0.00 2.52
2062 2183 7.693969 ATCAGAGAATCGAAGACCAAATTTT 57.306 32.000 0.00 0.00 42.51 1.82
2064 2185 8.792830 TCAGAGAATCGAAGACCAAATTTTAT 57.207 30.769 0.00 0.00 42.51 1.40
2165 2316 4.564406 GGATAGGATGGCCTTGTGATACTG 60.564 50.000 3.32 0.00 43.90 2.74
2564 2732 2.672295 GGTACAACCCCATCGCCA 59.328 61.111 0.00 0.00 30.04 5.69
2893 3064 0.302890 CCCGCTACGACTACTACACG 59.697 60.000 0.00 0.00 0.00 4.49
3108 3279 2.488355 CGGCATCCACGTACGTCT 59.512 61.111 19.94 3.17 0.00 4.18
3116 3287 4.672542 GCATCCACGTACGTCTTTACTACA 60.673 45.833 19.94 0.00 0.00 2.74
3117 3288 4.404507 TCCACGTACGTCTTTACTACAC 57.595 45.455 19.94 0.00 0.00 2.90
3118 3289 4.065088 TCCACGTACGTCTTTACTACACT 58.935 43.478 19.94 0.00 0.00 3.55
3119 3290 5.234752 TCCACGTACGTCTTTACTACACTA 58.765 41.667 19.94 0.00 0.00 2.74
3120 3291 5.699001 TCCACGTACGTCTTTACTACACTAA 59.301 40.000 19.94 0.00 0.00 2.24
3121 3292 6.371548 TCCACGTACGTCTTTACTACACTAAT 59.628 38.462 19.94 0.00 0.00 1.73
3122 3293 7.547722 TCCACGTACGTCTTTACTACACTAATA 59.452 37.037 19.94 0.00 0.00 0.98
3124 3295 9.708222 CACGTACGTCTTTACTACACTAATATT 57.292 33.333 19.94 0.00 0.00 1.28
3150 3321 8.530269 AAAAACGCTCTTATATTATAGGACGG 57.470 34.615 15.28 5.50 0.00 4.79
3156 3327 7.482474 GCTCTTATATTATAGGACGGAAGGAC 58.518 42.308 0.00 0.00 0.00 3.85
3159 3330 5.997384 ATATTATAGGACGGAAGGACACC 57.003 43.478 0.00 0.00 0.00 4.16
3160 3331 2.832643 TATAGGACGGAAGGACACCA 57.167 50.000 0.00 0.00 0.00 4.17
3161 3332 1.486211 ATAGGACGGAAGGACACCAG 58.514 55.000 0.00 0.00 0.00 4.00
3164 3335 1.079750 GACGGAAGGACACCAGAGC 60.080 63.158 0.00 0.00 0.00 4.09
3165 3336 1.816863 GACGGAAGGACACCAGAGCA 61.817 60.000 0.00 0.00 0.00 4.26
3172 3348 4.564406 GGAAGGACACCAGAGCATATATGG 60.564 50.000 14.51 1.29 46.41 2.74
3314 3490 0.034896 GTGGGTGACAAGGTCGTCAT 59.965 55.000 0.00 0.00 46.98 3.06
3360 3536 1.569653 GCCTACAGTCCTACCAGGTT 58.430 55.000 0.00 0.00 36.53 3.50
3380 3556 6.862711 GGTTAGTACCATTGCTAAATCCTC 57.137 41.667 0.00 0.00 44.36 3.71
3381 3557 5.465724 GGTTAGTACCATTGCTAAATCCTCG 59.534 44.000 0.00 0.00 44.36 4.63
3384 3560 3.838244 ACCATTGCTAAATCCTCGCTA 57.162 42.857 0.00 0.00 0.00 4.26
3385 3561 4.150897 ACCATTGCTAAATCCTCGCTAA 57.849 40.909 0.00 0.00 0.00 3.09
3386 3562 4.130118 ACCATTGCTAAATCCTCGCTAAG 58.870 43.478 0.00 0.00 0.00 2.18
3387 3563 4.130118 CCATTGCTAAATCCTCGCTAAGT 58.870 43.478 0.00 0.00 0.00 2.24
3390 3566 6.292919 CCATTGCTAAATCCTCGCTAAGTAAC 60.293 42.308 0.00 0.00 0.00 2.50
3391 3567 5.333299 TGCTAAATCCTCGCTAAGTAACA 57.667 39.130 0.00 0.00 0.00 2.41
3392 3568 5.107133 TGCTAAATCCTCGCTAAGTAACAC 58.893 41.667 0.00 0.00 0.00 3.32
3393 3569 5.107133 GCTAAATCCTCGCTAAGTAACACA 58.893 41.667 0.00 0.00 0.00 3.72
3394 3570 5.579511 GCTAAATCCTCGCTAAGTAACACAA 59.420 40.000 0.00 0.00 0.00 3.33
3395 3571 6.237861 GCTAAATCCTCGCTAAGTAACACAAG 60.238 42.308 0.00 0.00 0.00 3.16
3396 3572 2.955614 TCCTCGCTAAGTAACACAAGC 58.044 47.619 0.00 0.00 0.00 4.01
3397 3573 2.297880 TCCTCGCTAAGTAACACAAGCA 59.702 45.455 0.00 0.00 34.60 3.91
3398 3574 3.064207 CCTCGCTAAGTAACACAAGCAA 58.936 45.455 0.00 0.00 34.60 3.91
3399 3575 3.123621 CCTCGCTAAGTAACACAAGCAAG 59.876 47.826 0.00 0.00 34.60 4.01
3400 3576 2.478894 TCGCTAAGTAACACAAGCAAGC 59.521 45.455 0.00 0.00 34.60 4.01
3401 3577 2.223144 CGCTAAGTAACACAAGCAAGCA 59.777 45.455 0.00 0.00 34.60 3.91
3402 3578 3.665323 CGCTAAGTAACACAAGCAAGCAG 60.665 47.826 0.00 0.00 34.60 4.24
3403 3579 2.781945 AAGTAACACAAGCAAGCAGC 57.218 45.000 0.00 0.00 46.19 5.25
3412 3588 3.207354 GCAAGCAGCTGCCATCAT 58.793 55.556 34.39 13.75 43.38 2.45
3413 3589 1.226974 GCAAGCAGCTGCCATCATG 60.227 57.895 34.39 24.06 43.38 3.07
3414 3590 1.437573 CAAGCAGCTGCCATCATGG 59.562 57.895 34.39 10.15 43.38 3.66
3526 3702 1.537202 GCTTGTCCTTGTCACCATCAC 59.463 52.381 0.00 0.00 0.00 3.06
3566 3742 2.781595 ATCTTGTCCACGCCCGTGTC 62.782 60.000 18.15 11.71 44.02 3.67
3567 3743 3.515316 CTTGTCCACGCCCGTGTCT 62.515 63.158 18.15 0.00 44.02 3.41
3627 3814 3.881089 TCTCGTTTTCAACCTCCCTTTTC 59.119 43.478 0.00 0.00 0.00 2.29
3631 3818 4.558697 CGTTTTCAACCTCCCTTTTCCATC 60.559 45.833 0.00 0.00 0.00 3.51
3640 3827 2.102578 CCCTTTTCCATCCACACATCC 58.897 52.381 0.00 0.00 0.00 3.51
3657 3847 1.524621 CCGCATCATCCTCACCACC 60.525 63.158 0.00 0.00 0.00 4.61
3658 3848 1.884464 CGCATCATCCTCACCACCG 60.884 63.158 0.00 0.00 0.00 4.94
3659 3849 1.524621 GCATCATCCTCACCACCGG 60.525 63.158 0.00 0.00 0.00 5.28
3666 3856 0.768622 TCCTCACCACCGGTTGAATT 59.231 50.000 13.50 0.00 31.02 2.17
3674 3864 3.449377 ACCACCGGTTGAATTGTCTTTTT 59.551 39.130 13.50 0.00 27.29 1.94
3698 3898 5.539979 TGTAACCTACATCACGTAGCAAAA 58.460 37.500 0.00 0.00 45.49 2.44
3699 3899 6.167685 TGTAACCTACATCACGTAGCAAAAT 58.832 36.000 0.00 0.00 45.49 1.82
3700 3900 5.796350 AACCTACATCACGTAGCAAAATC 57.204 39.130 0.00 0.00 45.49 2.17
3701 3901 3.863424 ACCTACATCACGTAGCAAAATCG 59.137 43.478 0.00 0.00 45.49 3.34
3702 3902 3.863424 CCTACATCACGTAGCAAAATCGT 59.137 43.478 0.00 0.00 45.49 3.73
3703 3903 4.328983 CCTACATCACGTAGCAAAATCGTT 59.671 41.667 0.00 0.00 45.49 3.85
3704 3904 4.322101 ACATCACGTAGCAAAATCGTTC 57.678 40.909 0.00 0.00 35.62 3.95
3705 3905 3.181534 ACATCACGTAGCAAAATCGTTCG 60.182 43.478 0.00 0.00 35.62 3.95
3706 3906 2.396601 TCACGTAGCAAAATCGTTCGT 58.603 42.857 0.00 0.00 35.62 3.85
3707 3907 2.406024 TCACGTAGCAAAATCGTTCGTC 59.594 45.455 0.00 0.00 35.62 4.20
3709 3909 2.796031 ACGTAGCAAAATCGTTCGTCAA 59.204 40.909 0.00 0.00 34.07 3.18
3710 3910 3.121126 ACGTAGCAAAATCGTTCGTCAAG 60.121 43.478 0.00 0.00 34.07 3.02
3711 3911 3.121126 CGTAGCAAAATCGTTCGTCAAGT 60.121 43.478 0.00 0.00 0.00 3.16
3712 3912 4.088923 CGTAGCAAAATCGTTCGTCAAGTA 59.911 41.667 0.00 0.00 0.00 2.24
3713 3913 4.647291 AGCAAAATCGTTCGTCAAGTAG 57.353 40.909 0.00 0.00 0.00 2.57
3714 3914 4.056050 AGCAAAATCGTTCGTCAAGTAGT 58.944 39.130 0.00 0.00 0.00 2.73
3715 3915 4.150098 AGCAAAATCGTTCGTCAAGTAGTC 59.850 41.667 0.00 0.00 0.00 2.59
3716 3916 4.615386 CAAAATCGTTCGTCAAGTAGTCG 58.385 43.478 0.00 0.00 0.00 4.18
3718 3918 2.584166 TCGTTCGTCAAGTAGTCGTC 57.416 50.000 0.00 0.00 0.00 4.20
3719 3919 1.866601 TCGTTCGTCAAGTAGTCGTCA 59.133 47.619 0.00 0.00 0.00 4.35
3720 3920 2.287644 TCGTTCGTCAAGTAGTCGTCAA 59.712 45.455 0.00 0.00 0.00 3.18
3721 3921 2.399754 CGTTCGTCAAGTAGTCGTCAAC 59.600 50.000 0.00 0.00 0.00 3.18
3722 3922 2.305252 TCGTCAAGTAGTCGTCAACG 57.695 50.000 0.00 0.00 41.45 4.10
3723 3923 1.069703 TCGTCAAGTAGTCGTCAACGG 60.070 52.381 2.31 0.00 40.29 4.44
3724 3924 1.058404 GTCAAGTAGTCGTCAACGGC 58.942 55.000 0.00 0.00 45.56 5.68
3753 3953 2.320587 GCACGCTGTTGGTCCAGAG 61.321 63.158 0.00 0.00 38.12 3.35
3754 3954 2.031163 ACGCTGTTGGTCCAGAGC 59.969 61.111 12.90 12.90 35.90 4.09
3756 3956 2.343758 GCTGTTGGTCCAGAGCGA 59.656 61.111 8.75 0.00 34.23 4.93
3758 3958 1.364626 GCTGTTGGTCCAGAGCGATG 61.365 60.000 8.75 0.00 34.23 3.84
3759 3959 1.364626 CTGTTGGTCCAGAGCGATGC 61.365 60.000 0.00 0.00 34.23 3.91
3760 3960 1.375908 GTTGGTCCAGAGCGATGCA 60.376 57.895 0.00 0.00 0.00 3.96
3761 3961 0.955428 GTTGGTCCAGAGCGATGCAA 60.955 55.000 0.00 0.00 0.00 4.08
3762 3962 0.250684 TTGGTCCAGAGCGATGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
3767 3967 1.469703 TCCAGAGCGATGCAAACAATG 59.530 47.619 0.00 0.00 0.00 2.82
3784 3984 1.568612 ATGCGTGCACTCCTCGTTTG 61.569 55.000 16.19 0.00 33.27 2.93
3794 3994 4.787598 CACTCCTCGTTTGATTTCCAAAG 58.212 43.478 0.00 0.00 44.64 2.77
3802 4002 4.379793 CGTTTGATTTCCAAAGAAGCTTCG 59.620 41.667 20.43 6.77 44.64 3.79
3803 4003 5.519722 GTTTGATTTCCAAAGAAGCTTCGA 58.480 37.500 20.43 9.11 44.64 3.71
3804 4004 5.362556 TTGATTTCCAAAGAAGCTTCGAG 57.637 39.130 20.43 13.66 32.35 4.04
3805 4005 3.753272 TGATTTCCAAAGAAGCTTCGAGG 59.247 43.478 20.43 21.10 32.35 4.63
3806 4006 2.930826 TTCCAAAGAAGCTTCGAGGT 57.069 45.000 24.46 10.61 0.00 3.85
3807 4007 2.169832 TCCAAAGAAGCTTCGAGGTG 57.830 50.000 24.46 18.52 0.00 4.00
3808 4008 0.519077 CCAAAGAAGCTTCGAGGTGC 59.481 55.000 20.43 0.00 0.00 5.01
3809 4009 1.517242 CAAAGAAGCTTCGAGGTGCT 58.483 50.000 20.43 0.00 41.82 4.40
3811 4011 0.681733 AAGAAGCTTCGAGGTGCTCA 59.318 50.000 20.43 0.00 38.75 4.26
3812 4012 0.901124 AGAAGCTTCGAGGTGCTCAT 59.099 50.000 20.43 0.00 38.75 2.90
3817 4017 2.959030 AGCTTCGAGGTGCTCATATACA 59.041 45.455 0.00 0.00 33.90 2.29
3821 4021 6.603599 AGCTTCGAGGTGCTCATATACATATA 59.396 38.462 0.00 0.00 33.90 0.86
3822 4022 6.693545 GCTTCGAGGTGCTCATATACATATAC 59.306 42.308 0.00 0.00 0.00 1.47
3823 4023 7.415765 GCTTCGAGGTGCTCATATACATATACT 60.416 40.741 0.00 0.00 0.00 2.12
3824 4024 9.110502 CTTCGAGGTGCTCATATACATATACTA 57.889 37.037 0.00 0.00 0.00 1.82
3825 4025 9.457436 TTCGAGGTGCTCATATACATATACTAA 57.543 33.333 0.00 0.00 0.00 2.24
3826 4026 9.628500 TCGAGGTGCTCATATACATATACTAAT 57.372 33.333 0.00 0.00 0.00 1.73
3827 4027 9.670719 CGAGGTGCTCATATACATATACTAATG 57.329 37.037 0.00 0.00 0.00 1.90
3828 4028 9.973450 GAGGTGCTCATATACATATACTAATGG 57.027 37.037 0.00 0.00 0.00 3.16
3829 4029 9.715119 AGGTGCTCATATACATATACTAATGGA 57.285 33.333 0.00 0.00 0.00 3.41
3844 4044 8.854614 ATACTAATGGATGAGGTATTTTGCTC 57.145 34.615 0.00 0.00 0.00 4.26
3847 4047 3.889815 TGGATGAGGTATTTTGCTCTGG 58.110 45.455 0.00 0.00 0.00 3.86
4003 4203 3.086600 CTCTGGGTCCTGGCCTCC 61.087 72.222 3.32 0.99 0.00 4.30
4042 4242 0.242825 CCGCCGTGTTCTTCAGAGTA 59.757 55.000 0.00 0.00 0.00 2.59
4051 4251 5.346281 CGTGTTCTTCAGAGTATTCAAGGAC 59.654 44.000 0.00 0.00 0.00 3.85
4106 4306 2.943033 GACCCCACCAAGTATGATTTCG 59.057 50.000 0.00 0.00 0.00 3.46
4125 4325 1.603802 CGCCACATCTCTCTCTCTCTC 59.396 57.143 0.00 0.00 0.00 3.20
4128 4328 3.434167 GCCACATCTCTCTCTCTCTCTCT 60.434 52.174 0.00 0.00 0.00 3.10
4129 4329 4.785301 CCACATCTCTCTCTCTCTCTCTT 58.215 47.826 0.00 0.00 0.00 2.85
4130 4330 5.195940 CCACATCTCTCTCTCTCTCTCTTT 58.804 45.833 0.00 0.00 0.00 2.52
4131 4331 5.297776 CCACATCTCTCTCTCTCTCTCTTTC 59.702 48.000 0.00 0.00 0.00 2.62
4132 4332 5.882000 CACATCTCTCTCTCTCTCTCTTTCA 59.118 44.000 0.00 0.00 0.00 2.69
4133 4333 6.544931 CACATCTCTCTCTCTCTCTCTTTCAT 59.455 42.308 0.00 0.00 0.00 2.57
4135 4335 6.566079 TCTCTCTCTCTCTCTCTTTCATCT 57.434 41.667 0.00 0.00 0.00 2.90
4136 4336 6.586344 TCTCTCTCTCTCTCTCTTTCATCTC 58.414 44.000 0.00 0.00 0.00 2.75
4138 4338 4.792068 TCTCTCTCTCTCTTTCATCTCCC 58.208 47.826 0.00 0.00 0.00 4.30
4145 4371 2.695666 TCTCTTTCATCTCCCGTCCATC 59.304 50.000 0.00 0.00 0.00 3.51
4146 4372 2.697751 CTCTTTCATCTCCCGTCCATCT 59.302 50.000 0.00 0.00 0.00 2.90
4161 4387 6.373216 CCCGTCCATCTATTTCAAGTGTAAAA 59.627 38.462 0.00 0.00 0.00 1.52
4162 4388 7.241376 CCGTCCATCTATTTCAAGTGTAAAAC 58.759 38.462 0.00 0.00 0.00 2.43
4164 4390 8.450964 CGTCCATCTATTTCAAGTGTAAAACAT 58.549 33.333 0.00 0.00 0.00 2.71
4186 4412 9.981114 AACATTTTAAGTTTCTAACTCAATGGG 57.019 29.630 15.84 0.00 41.91 4.00
4187 4413 8.088365 ACATTTTAAGTTTCTAACTCAATGGGC 58.912 33.333 15.84 0.00 41.91 5.36
4188 4414 6.584185 TTTAAGTTTCTAACTCAATGGGCC 57.416 37.500 0.00 0.00 41.91 5.80
4189 4415 3.806949 AGTTTCTAACTCAATGGGCCA 57.193 42.857 9.61 9.61 37.02 5.36
4191 4417 4.677182 AGTTTCTAACTCAATGGGCCATT 58.323 39.130 25.94 25.94 37.02 3.16
4192 4418 4.706962 AGTTTCTAACTCAATGGGCCATTC 59.293 41.667 28.54 13.24 37.02 2.67
4196 4448 5.332743 TCTAACTCAATGGGCCATTCTTTT 58.667 37.500 28.54 21.08 31.05 2.27
4224 4476 0.099613 CGACAGGTCATCTCTCACCG 59.900 60.000 0.00 0.00 37.79 4.94
4244 4496 3.564455 GGGTCTATACAAGCCGACG 57.436 57.895 0.00 0.00 0.00 5.12
4289 4541 0.822164 TTTCGTCCGGGAAGATCTCC 59.178 55.000 13.46 0.00 44.54 3.71
4304 4556 2.847327 TCTCCTTGAGAAGCTTGGTG 57.153 50.000 2.10 0.00 35.59 4.17
4337 4589 5.342259 GCTCGTTTGTAACATCATTTTGACC 59.658 40.000 0.00 0.00 0.00 4.02
4353 4605 3.624326 TGACCAGTGCATTTTCTTTCG 57.376 42.857 0.00 0.00 0.00 3.46
4392 4644 6.396459 TTTTTGTTGACCAACGTTGATTTC 57.604 33.333 29.35 20.48 43.94 2.17
4393 4645 3.701532 TGTTGACCAACGTTGATTTCC 57.298 42.857 29.35 13.83 43.94 3.13
4501 4753 1.716172 GGGAAAGACGCGCATCTTC 59.284 57.895 20.13 12.41 37.99 2.87
4551 4803 0.470766 AGGTGTCCAAACTAACGGCA 59.529 50.000 0.00 0.00 0.00 5.69
4563 4815 2.158900 ACTAACGGCATGGGAGATGAAG 60.159 50.000 0.00 0.00 0.00 3.02
4566 4818 1.134280 ACGGCATGGGAGATGAAGAAG 60.134 52.381 0.00 0.00 0.00 2.85
4569 4821 1.590932 CATGGGAGATGAAGAAGCCG 58.409 55.000 0.00 0.00 0.00 5.52
4578 4830 4.125703 AGATGAAGAAGCCGATGATGAAC 58.874 43.478 0.00 0.00 0.00 3.18
4597 4859 1.068474 CGGCGCCTAAGTGTATATGC 58.932 55.000 26.68 0.00 0.00 3.14
4603 4865 4.511826 GCGCCTAAGTGTATATGCTTTCTT 59.488 41.667 0.00 0.00 0.00 2.52
4605 4867 5.050091 CGCCTAAGTGTATATGCTTTCTTGG 60.050 44.000 0.00 0.00 0.00 3.61
4612 4874 6.948309 AGTGTATATGCTTTCTTGGGAGTTTT 59.052 34.615 0.00 0.00 0.00 2.43
4613 4875 7.029563 GTGTATATGCTTTCTTGGGAGTTTTG 58.970 38.462 0.00 0.00 0.00 2.44
4619 4881 4.332543 GCTTTCTTGGGAGTTTTGGTTTTG 59.667 41.667 0.00 0.00 0.00 2.44
4621 4883 2.169561 TCTTGGGAGTTTTGGTTTTGGC 59.830 45.455 0.00 0.00 0.00 4.52
4623 4885 2.192263 TGGGAGTTTTGGTTTTGGCTT 58.808 42.857 0.00 0.00 0.00 4.35
4625 4887 3.386402 TGGGAGTTTTGGTTTTGGCTTAG 59.614 43.478 0.00 0.00 0.00 2.18
4628 4890 4.142026 GGAGTTTTGGTTTTGGCTTAGTGT 60.142 41.667 0.00 0.00 0.00 3.55
4629 4891 5.414789 AGTTTTGGTTTTGGCTTAGTGTT 57.585 34.783 0.00 0.00 0.00 3.32
4630 4892 5.175127 AGTTTTGGTTTTGGCTTAGTGTTG 58.825 37.500 0.00 0.00 0.00 3.33
4634 4896 5.153950 TGGTTTTGGCTTAGTGTTGTTTT 57.846 34.783 0.00 0.00 0.00 2.43
4635 4897 6.282199 TGGTTTTGGCTTAGTGTTGTTTTA 57.718 33.333 0.00 0.00 0.00 1.52
4636 4898 6.879400 TGGTTTTGGCTTAGTGTTGTTTTAT 58.121 32.000 0.00 0.00 0.00 1.40
4637 4899 6.758886 TGGTTTTGGCTTAGTGTTGTTTTATG 59.241 34.615 0.00 0.00 0.00 1.90
4638 4900 6.759356 GGTTTTGGCTTAGTGTTGTTTTATGT 59.241 34.615 0.00 0.00 0.00 2.29
4639 4901 7.042992 GGTTTTGGCTTAGTGTTGTTTTATGTC 60.043 37.037 0.00 0.00 0.00 3.06
4640 4902 5.351233 TGGCTTAGTGTTGTTTTATGTCG 57.649 39.130 0.00 0.00 0.00 4.35
4641 4903 5.057819 TGGCTTAGTGTTGTTTTATGTCGA 58.942 37.500 0.00 0.00 0.00 4.20
4642 4904 5.049954 TGGCTTAGTGTTGTTTTATGTCGAC 60.050 40.000 9.11 9.11 0.00 4.20
4643 4905 5.379827 GCTTAGTGTTGTTTTATGTCGACC 58.620 41.667 14.12 0.00 0.00 4.79
4653 4916 1.825090 TATGTCGACCTACACCACGT 58.175 50.000 14.12 0.00 30.75 4.49
4670 4933 2.342651 CACGTAACTGATTGCTCGTCTG 59.657 50.000 0.00 0.00 0.00 3.51
4688 4951 4.624882 CGTCTGAATGAAGACCTCTTTGAG 59.375 45.833 3.17 0.00 43.09 3.02
4689 4952 5.546526 GTCTGAATGAAGACCTCTTTGAGT 58.453 41.667 0.00 0.00 40.66 3.41
4690 4953 6.570571 CGTCTGAATGAAGACCTCTTTGAGTA 60.571 42.308 3.17 0.00 43.09 2.59
4691 4954 7.327214 GTCTGAATGAAGACCTCTTTGAGTAT 58.673 38.462 0.00 0.00 40.66 2.12
4702 4965 5.112686 CCTCTTTGAGTATGTAGAAGTGGC 58.887 45.833 0.00 0.00 0.00 5.01
4723 4986 5.637810 TGGCTAGAGAAATTTGTTGTACGAG 59.362 40.000 0.00 0.00 0.00 4.18
4724 4987 5.446073 GGCTAGAGAAATTTGTTGTACGAGC 60.446 44.000 0.00 0.00 0.00 5.03
4725 4988 5.120208 GCTAGAGAAATTTGTTGTACGAGCA 59.880 40.000 0.00 0.00 0.00 4.26
4739 5028 6.252967 TGTACGAGCAAAAACATGATGATT 57.747 33.333 0.00 0.00 0.00 2.57
4750 5039 3.872696 ACATGATGATTCCACGCTGTTA 58.127 40.909 0.00 0.00 0.00 2.41
4752 5041 4.883585 ACATGATGATTCCACGCTGTTATT 59.116 37.500 0.00 0.00 0.00 1.40
4754 5043 6.542005 ACATGATGATTCCACGCTGTTATTAA 59.458 34.615 0.00 0.00 0.00 1.40
4755 5044 7.229306 ACATGATGATTCCACGCTGTTATTAAT 59.771 33.333 0.00 0.00 0.00 1.40
4756 5045 8.720562 CATGATGATTCCACGCTGTTATTAATA 58.279 33.333 0.00 0.00 0.00 0.98
4757 5046 8.669946 TGATGATTCCACGCTGTTATTAATAA 57.330 30.769 3.71 3.71 0.00 1.40
4802 5091 9.958180 TGATTTTCTTATTTCCACTGATGTCTA 57.042 29.630 0.00 0.00 0.00 2.59
4804 5093 7.849804 TTTCTTATTTCCACTGATGTCTAGC 57.150 36.000 0.00 0.00 0.00 3.42
4805 5094 6.798427 TCTTATTTCCACTGATGTCTAGCT 57.202 37.500 0.00 0.00 0.00 3.32
4818 5110 3.914312 TGTCTAGCTCTTTGTACTGTGC 58.086 45.455 0.00 0.00 0.00 4.57
4822 5114 2.498167 AGCTCTTTGTACTGTGCCAAG 58.502 47.619 3.78 3.78 0.00 3.61
4857 5149 4.186926 TGATGCTAATCTGACTCAACTGC 58.813 43.478 0.00 0.00 33.61 4.40
4860 5152 3.118992 TGCTAATCTGACTCAACTGCGAT 60.119 43.478 0.00 0.00 0.00 4.58
4876 5168 3.969899 TGCGATGAGATAAGCACTAGTG 58.030 45.455 18.93 18.93 34.39 2.74
4936 5255 0.595095 CAGAAGCACTTGGGAGCAAC 59.405 55.000 0.00 0.00 0.00 4.17
4941 5260 1.926511 GCACTTGGGAGCAACGGATG 61.927 60.000 0.00 0.00 0.00 3.51
4943 5262 0.110486 ACTTGGGAGCAACGGATGTT 59.890 50.000 0.00 0.00 39.43 2.71
4949 5268 1.068541 GGAGCAACGGATGTTTTCACC 60.069 52.381 0.00 0.00 35.72 4.02
4998 5317 1.522258 GAAACATGGTGCACGCTTTTG 59.478 47.619 11.45 6.20 0.00 2.44
5002 5321 0.893270 ATGGTGCACGCTTTTGCCTA 60.893 50.000 11.45 0.00 42.25 3.93
5010 5329 5.120053 GTGCACGCTTTTGCCTATTTTTAAT 59.880 36.000 0.00 0.00 42.25 1.40
5011 5330 5.119898 TGCACGCTTTTGCCTATTTTTAATG 59.880 36.000 0.01 0.00 42.25 1.90
5017 5337 6.962678 GCTTTTGCCTATTTTTAATGCATGTG 59.037 34.615 0.00 0.00 40.15 3.21
5020 5340 8.472683 TTTGCCTATTTTTAATGCATGTGTAC 57.527 30.769 0.00 0.00 0.00 2.90
5023 5343 7.065923 TGCCTATTTTTAATGCATGTGTACGTA 59.934 33.333 0.00 0.00 0.00 3.57
5107 5429 4.012374 CAACCAGTGGTGCAGATTATTCT 58.988 43.478 17.56 0.00 35.34 2.40
5110 5432 5.815581 ACCAGTGGTGCAGATTATTCTTTA 58.184 37.500 15.86 0.00 32.98 1.85
5112 5434 6.891908 ACCAGTGGTGCAGATTATTCTTTATT 59.108 34.615 15.86 0.00 32.98 1.40
5113 5435 7.067494 ACCAGTGGTGCAGATTATTCTTTATTC 59.933 37.037 15.86 0.00 32.98 1.75
5115 5437 8.680903 CAGTGGTGCAGATTATTCTTTATTCTT 58.319 33.333 0.00 0.00 0.00 2.52
5116 5438 8.680903 AGTGGTGCAGATTATTCTTTATTCTTG 58.319 33.333 0.00 0.00 0.00 3.02
5117 5439 8.462016 GTGGTGCAGATTATTCTTTATTCTTGT 58.538 33.333 0.00 0.00 0.00 3.16
5118 5440 9.023962 TGGTGCAGATTATTCTTTATTCTTGTT 57.976 29.630 0.00 0.00 0.00 2.83
5119 5441 9.508567 GGTGCAGATTATTCTTTATTCTTGTTC 57.491 33.333 0.00 0.00 0.00 3.18
5146 5468 4.332543 TGCGATTAAGTGGTGCAGATTAAG 59.667 41.667 0.00 0.00 0.00 1.85
5148 5470 4.260784 CGATTAAGTGGTGCAGATTAAGCC 60.261 45.833 0.00 0.00 0.00 4.35
5158 5480 5.064834 GGTGCAGATTAAGCCTTACTAACAC 59.935 44.000 0.00 0.00 0.00 3.32
5163 5485 1.804601 AAGCCTTACTAACACGCCAC 58.195 50.000 0.00 0.00 0.00 5.01
5172 5494 6.401796 CCTTACTAACACGCCACAAAAGTATC 60.402 42.308 0.00 0.00 0.00 2.24
5176 5498 2.415168 ACACGCCACAAAAGTATCATCG 59.585 45.455 0.00 0.00 0.00 3.84
5189 5511 4.708177 AGTATCATCGGTTGGAATCTTGG 58.292 43.478 0.00 0.00 0.00 3.61
5190 5512 3.652057 ATCATCGGTTGGAATCTTGGT 57.348 42.857 0.00 0.00 0.00 3.67
5213 5535 7.017452 TGGTAAAGGTTAGTGGTAGGTTTATGT 59.983 37.037 0.00 0.00 0.00 2.29
5218 5540 9.498039 AAGGTTAGTGGTAGGTTTATGTAGTAT 57.502 33.333 0.00 0.00 0.00 2.12
5219 5541 8.921205 AGGTTAGTGGTAGGTTTATGTAGTATG 58.079 37.037 0.00 0.00 0.00 2.39
5247 5569 3.131396 GGGATAACCACATGATCGTGAC 58.869 50.000 21.75 3.95 39.34 3.67
5254 5576 4.894784 ACCACATGATCGTGACTAAGTTT 58.105 39.130 21.75 0.00 39.34 2.66
5302 5626 1.440060 GGTGCCCGTATCATCGTGA 59.560 57.895 0.00 0.00 0.00 4.35
5342 5666 9.465985 GTCCTGAAAAGAAGTACTATATGTAGC 57.534 37.037 0.00 0.00 0.00 3.58
5343 5667 9.422681 TCCTGAAAAGAAGTACTATATGTAGCT 57.577 33.333 0.00 0.00 0.00 3.32
5368 5699 2.540265 CAGGTGATGGATCTGCCTAC 57.460 55.000 0.00 0.00 37.63 3.18
5383 5714 4.688879 TCTGCCTACGACTAACAACAAATG 59.311 41.667 0.00 0.00 0.00 2.32
5404 5735 8.859156 CAAATGTAATGTAAAGGCACATACAAC 58.141 33.333 2.01 0.00 38.19 3.32
5405 5736 6.171932 TGTAATGTAAAGGCACATACAACG 57.828 37.500 2.01 0.00 38.19 4.10
5433 5764 9.683069 CTCATCCAAAAAGGTGCATATATTAAC 57.317 33.333 0.00 0.00 39.02 2.01
5468 5803 4.114997 GGCCGAATTGCACCCACG 62.115 66.667 0.00 0.00 0.00 4.94
5469 5804 3.361977 GCCGAATTGCACCCACGT 61.362 61.111 0.00 0.00 0.00 4.49
5480 5815 3.403057 CCCACGTCGAACTGCACG 61.403 66.667 0.00 0.00 41.90 5.34
5485 5820 2.964925 GTCGAACTGCACGGCACA 60.965 61.111 0.00 0.00 35.39 4.57
5486 5821 2.202946 TCGAACTGCACGGCACAA 60.203 55.556 0.00 0.00 33.79 3.33
5487 5822 1.815840 TCGAACTGCACGGCACAAA 60.816 52.632 0.00 0.00 33.79 2.83
5490 5825 0.100503 GAACTGCACGGCACAAAACT 59.899 50.000 0.00 0.00 33.79 2.66
5491 5826 0.100503 AACTGCACGGCACAAAACTC 59.899 50.000 0.00 0.00 33.79 3.01
5498 5833 2.026915 CGGCACAAAACTCCGTTTAC 57.973 50.000 0.00 0.00 34.43 2.01
5501 5836 3.248125 CGGCACAAAACTCCGTTTACTTA 59.752 43.478 0.00 0.00 34.43 2.24
5502 5837 4.083696 CGGCACAAAACTCCGTTTACTTAT 60.084 41.667 0.00 0.00 34.43 1.73
5503 5838 5.388111 GGCACAAAACTCCGTTTACTTATC 58.612 41.667 0.00 0.00 34.43 1.75
5505 5840 6.369615 GGCACAAAACTCCGTTTACTTATCTA 59.630 38.462 0.00 0.00 34.43 1.98
5506 5841 7.232300 GCACAAAACTCCGTTTACTTATCTAC 58.768 38.462 0.00 0.00 34.43 2.59
5508 5843 9.630098 CACAAAACTCCGTTTACTTATCTACTA 57.370 33.333 0.00 0.00 34.43 1.82
5509 5844 9.852091 ACAAAACTCCGTTTACTTATCTACTAG 57.148 33.333 0.00 0.00 34.43 2.57
5530 5868 6.990349 ACTAGTATTGTTTTGGTAGCGCATAT 59.010 34.615 11.47 0.00 0.00 1.78
5532 5870 7.795482 AGTATTGTTTTGGTAGCGCATATAA 57.205 32.000 11.47 0.00 0.00 0.98
5543 5881 4.966850 AGCGCATATAACACGTGTAATC 57.033 40.909 23.69 7.35 0.00 1.75
5557 5898 8.684973 ACACGTGTAATCTAGTAGTTGAAATC 57.315 34.615 21.98 0.00 0.00 2.17
5564 5905 9.303537 GTAATCTAGTAGTTGAAATCACAGGTC 57.696 37.037 0.00 0.00 0.00 3.85
5565 5906 6.911250 TCTAGTAGTTGAAATCACAGGTCA 57.089 37.500 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.150837 GCGTACGTTCAGACCTCGC 61.151 63.158 17.90 0.00 35.86 5.03
47 48 8.614994 AGAAGAAACAAAAACGTGTAAATCAG 57.385 30.769 0.00 0.00 0.00 2.90
75 76 2.362736 TCATCTGAACAAGCATGCTCC 58.637 47.619 22.93 11.18 0.00 4.70
78 79 4.740268 TGATTTCATCTGAACAAGCATGC 58.260 39.130 10.51 10.51 33.13 4.06
79 80 6.255670 CCATTGATTTCATCTGAACAAGCATG 59.744 38.462 0.00 0.00 33.13 4.06
80 81 6.338146 CCATTGATTTCATCTGAACAAGCAT 58.662 36.000 0.00 0.00 33.13 3.79
81 82 5.336929 CCCATTGATTTCATCTGAACAAGCA 60.337 40.000 0.00 0.00 33.13 3.91
100 101 2.225117 CCTCACAAGAAAGTCCCCCATT 60.225 50.000 0.00 0.00 0.00 3.16
101 102 1.355720 CCTCACAAGAAAGTCCCCCAT 59.644 52.381 0.00 0.00 0.00 4.00
102 103 0.771127 CCTCACAAGAAAGTCCCCCA 59.229 55.000 0.00 0.00 0.00 4.96
103 104 1.064825 TCCTCACAAGAAAGTCCCCC 58.935 55.000 0.00 0.00 0.00 5.40
104 105 3.009584 AGAATCCTCACAAGAAAGTCCCC 59.990 47.826 0.00 0.00 0.00 4.81
105 106 4.257731 GAGAATCCTCACAAGAAAGTCCC 58.742 47.826 0.00 0.00 39.24 4.46
126 127 4.158394 GGAAAAATGCAGTAATGCTCAGGA 59.842 41.667 17.03 0.00 35.49 3.86
155 156 7.601508 CGTAGTAGGTGGTTTCAGTCTTATTTT 59.398 37.037 0.00 0.00 0.00 1.82
161 162 3.757493 CTCGTAGTAGGTGGTTTCAGTCT 59.243 47.826 0.00 0.00 0.00 3.24
165 166 3.489355 TGACTCGTAGTAGGTGGTTTCA 58.511 45.455 0.00 0.00 0.00 2.69
171 172 3.864243 AGTCTCTGACTCGTAGTAGGTG 58.136 50.000 0.00 0.00 38.71 4.00
173 174 5.644636 AGAAAAGTCTCTGACTCGTAGTAGG 59.355 44.000 0.42 0.00 42.59 3.18
241 253 1.511850 CTTGTCATGTCAGCACCGAA 58.488 50.000 0.00 0.00 0.00 4.30
244 256 1.160137 GTCCTTGTCATGTCAGCACC 58.840 55.000 0.00 0.00 0.00 5.01
283 295 4.687483 GCCAGAAAATTCAACTTGGTCATG 59.313 41.667 0.00 0.00 0.00 3.07
299 311 4.098807 AGCCGAAAACTAAAAAGCCAGAAA 59.901 37.500 0.00 0.00 0.00 2.52
311 323 3.744426 GTCTTGCAACTAGCCGAAAACTA 59.256 43.478 0.00 0.00 44.83 2.24
312 324 2.548480 GTCTTGCAACTAGCCGAAAACT 59.452 45.455 0.00 0.00 44.83 2.66
313 325 2.289547 TGTCTTGCAACTAGCCGAAAAC 59.710 45.455 0.00 0.00 44.83 2.43
314 326 2.566913 TGTCTTGCAACTAGCCGAAAA 58.433 42.857 0.00 0.00 44.83 2.29
315 327 2.248280 TGTCTTGCAACTAGCCGAAA 57.752 45.000 0.00 0.00 44.83 3.46
316 328 2.076100 CATGTCTTGCAACTAGCCGAA 58.924 47.619 0.00 0.00 44.83 4.30
317 329 1.001974 ACATGTCTTGCAACTAGCCGA 59.998 47.619 0.00 0.00 44.83 5.54
318 330 1.442769 ACATGTCTTGCAACTAGCCG 58.557 50.000 0.00 0.00 44.83 5.52
319 331 2.095059 CCAACATGTCTTGCAACTAGCC 60.095 50.000 0.00 0.00 44.83 3.93
320 332 2.554032 ACCAACATGTCTTGCAACTAGC 59.446 45.455 0.00 0.00 45.96 3.42
343 355 7.592903 GCAGCTAATAAGTTATTTTGCCATCTC 59.407 37.037 13.20 3.96 31.40 2.75
345 357 7.202526 TGCAGCTAATAAGTTATTTTGCCATC 58.797 34.615 22.83 15.47 32.58 3.51
362 374 5.295292 GCTGTTCTCTCATTTATGCAGCTAA 59.705 40.000 0.00 0.00 43.08 3.09
363 375 4.813161 GCTGTTCTCTCATTTATGCAGCTA 59.187 41.667 0.00 0.00 43.08 3.32
364 376 3.626670 GCTGTTCTCTCATTTATGCAGCT 59.373 43.478 0.00 0.00 43.08 4.24
367 379 3.860641 TCGCTGTTCTCTCATTTATGCA 58.139 40.909 0.00 0.00 0.00 3.96
368 380 5.415415 AATCGCTGTTCTCTCATTTATGC 57.585 39.130 0.00 0.00 0.00 3.14
369 381 5.460091 TCGAATCGCTGTTCTCTCATTTATG 59.540 40.000 0.00 0.00 0.00 1.90
371 383 4.993905 TCGAATCGCTGTTCTCTCATTTA 58.006 39.130 0.00 0.00 0.00 1.40
372 384 3.849911 TCGAATCGCTGTTCTCTCATTT 58.150 40.909 0.00 0.00 0.00 2.32
373 385 3.510388 TCGAATCGCTGTTCTCTCATT 57.490 42.857 0.00 0.00 0.00 2.57
374 386 3.379240 CATCGAATCGCTGTTCTCTCAT 58.621 45.455 0.00 0.00 0.00 2.90
375 387 2.802256 CATCGAATCGCTGTTCTCTCA 58.198 47.619 0.00 0.00 0.00 3.27
376 388 1.520590 GCATCGAATCGCTGTTCTCTC 59.479 52.381 8.29 0.00 0.00 3.20
377 389 1.565305 GCATCGAATCGCTGTTCTCT 58.435 50.000 8.29 0.00 0.00 3.10
378 390 0.579156 GGCATCGAATCGCTGTTCTC 59.421 55.000 8.29 0.00 0.00 2.87
379 391 0.811616 GGGCATCGAATCGCTGTTCT 60.812 55.000 8.29 0.00 0.00 3.01
380 392 1.089481 TGGGCATCGAATCGCTGTTC 61.089 55.000 8.29 2.07 0.00 3.18
381 393 1.078497 TGGGCATCGAATCGCTGTT 60.078 52.632 8.29 0.00 0.00 3.16
382 394 1.522355 CTGGGCATCGAATCGCTGT 60.522 57.895 8.29 0.00 0.00 4.40
383 395 2.249535 CCTGGGCATCGAATCGCTG 61.250 63.158 1.76 1.76 0.00 5.18
384 396 2.109799 CCTGGGCATCGAATCGCT 59.890 61.111 0.00 0.00 0.00 4.93
385 397 3.654020 GCCTGGGCATCGAATCGC 61.654 66.667 6.75 0.00 41.49 4.58
386 398 1.958205 GAGCCTGGGCATCGAATCG 60.958 63.158 14.39 0.00 44.88 3.34
387 399 0.250640 ATGAGCCTGGGCATCGAATC 60.251 55.000 14.39 2.15 44.88 2.52
388 400 0.250640 GATGAGCCTGGGCATCGAAT 60.251 55.000 14.39 0.00 44.88 3.34
389 401 1.146930 GATGAGCCTGGGCATCGAA 59.853 57.895 14.39 0.00 44.88 3.71
390 402 0.469892 TAGATGAGCCTGGGCATCGA 60.470 55.000 14.39 2.93 44.23 3.59
391 403 0.320247 GTAGATGAGCCTGGGCATCG 60.320 60.000 14.39 0.00 44.23 3.84
392 404 0.761187 TGTAGATGAGCCTGGGCATC 59.239 55.000 14.39 8.82 44.88 3.91
393 405 0.471617 GTGTAGATGAGCCTGGGCAT 59.528 55.000 14.39 0.00 44.88 4.40
394 406 1.626356 GGTGTAGATGAGCCTGGGCA 61.626 60.000 14.39 0.00 44.88 5.36
395 407 1.147153 GGTGTAGATGAGCCTGGGC 59.853 63.158 3.00 3.00 42.33 5.36
396 408 1.832912 GGGTGTAGATGAGCCTGGG 59.167 63.158 0.00 0.00 0.00 4.45
397 409 1.330655 ACGGGTGTAGATGAGCCTGG 61.331 60.000 0.00 0.00 0.00 4.45
398 410 0.179100 CACGGGTGTAGATGAGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
399 411 1.961180 GCACGGGTGTAGATGAGCCT 61.961 60.000 0.25 0.00 0.00 4.58
400 412 1.521681 GCACGGGTGTAGATGAGCC 60.522 63.158 0.25 0.00 0.00 4.70
401 413 0.807667 CAGCACGGGTGTAGATGAGC 60.808 60.000 0.25 0.00 0.00 4.26
402 414 0.817654 TCAGCACGGGTGTAGATGAG 59.182 55.000 0.25 0.00 32.43 2.90
403 415 1.204704 CTTCAGCACGGGTGTAGATGA 59.795 52.381 0.25 0.00 31.78 2.92
404 416 1.204704 TCTTCAGCACGGGTGTAGATG 59.795 52.381 7.83 2.44 33.81 2.90
405 417 1.557099 TCTTCAGCACGGGTGTAGAT 58.443 50.000 7.83 0.00 33.81 1.98
406 418 1.334160 TTCTTCAGCACGGGTGTAGA 58.666 50.000 7.83 7.83 36.12 2.59
407 419 2.163818 TTTCTTCAGCACGGGTGTAG 57.836 50.000 0.25 0.00 31.48 2.74
408 420 2.215196 GTTTTCTTCAGCACGGGTGTA 58.785 47.619 0.25 0.00 32.43 2.90
409 421 1.021968 GTTTTCTTCAGCACGGGTGT 58.978 50.000 0.25 0.00 32.43 4.16
410 422 1.021202 TGTTTTCTTCAGCACGGGTG 58.979 50.000 0.00 0.00 0.00 4.61
411 423 1.757682 TTGTTTTCTTCAGCACGGGT 58.242 45.000 0.00 0.00 0.00 5.28
412 424 3.252215 TGTATTGTTTTCTTCAGCACGGG 59.748 43.478 0.00 0.00 0.00 5.28
413 425 4.481930 TGTATTGTTTTCTTCAGCACGG 57.518 40.909 0.00 0.00 0.00 4.94
414 426 5.340403 CACATGTATTGTTTTCTTCAGCACG 59.660 40.000 0.00 0.00 36.00 5.34
415 427 5.117592 GCACATGTATTGTTTTCTTCAGCAC 59.882 40.000 0.00 0.00 36.00 4.40
416 428 5.221204 TGCACATGTATTGTTTTCTTCAGCA 60.221 36.000 0.00 0.00 36.00 4.41
417 429 5.221880 TGCACATGTATTGTTTTCTTCAGC 58.778 37.500 0.00 0.00 36.00 4.26
418 430 6.361481 CACTGCACATGTATTGTTTTCTTCAG 59.639 38.462 0.00 0.00 36.00 3.02
432 444 3.005050 CAGAAATTGGACACTGCACATGT 59.995 43.478 0.00 0.00 0.00 3.21
434 446 3.254166 GTCAGAAATTGGACACTGCACAT 59.746 43.478 0.00 0.00 34.22 3.21
465 477 9.270640 TGAAAATGCAAATGTTAGCAATACTTT 57.729 25.926 0.00 0.00 44.88 2.66
484 497 4.216042 TGCCATATACGGAGCATGAAAATG 59.784 41.667 0.00 0.00 0.00 2.32
485 498 4.216257 GTGCCATATACGGAGCATGAAAAT 59.784 41.667 0.00 0.00 37.60 1.82
505 518 1.268999 TGATGAAAACAACTGGCGTGC 60.269 47.619 0.00 0.00 0.00 5.34
525 538 4.013728 TGAGTGTACAAAACTTGGCTGTT 58.986 39.130 0.00 0.00 34.12 3.16
530 543 7.257722 AGTTTTCATGAGTGTACAAAACTTGG 58.742 34.615 11.77 0.00 36.07 3.61
571 632 0.721718 CTTTCTCGGTAAAGCTGCGG 59.278 55.000 0.00 0.00 30.24 5.69
573 634 2.413837 TGTCTTTCTCGGTAAAGCTGC 58.586 47.619 0.00 0.00 36.58 5.25
597 658 9.745323 GTTCTTATTTATTTGAAGTTGCAATGC 57.255 29.630 0.59 0.00 0.00 3.56
650 711 6.755206 ACGGCACTAAATAATATCACTAGCA 58.245 36.000 0.00 0.00 0.00 3.49
651 712 6.033619 CGACGGCACTAAATAATATCACTAGC 59.966 42.308 0.00 0.00 0.00 3.42
661 722 5.361135 TCGATATCGACGGCACTAAATAA 57.639 39.130 23.48 0.00 44.22 1.40
705 778 9.132521 CTCTATGCTGAACATTTTTAACTTTGG 57.867 33.333 0.00 0.00 40.38 3.28
722 795 4.256920 AGTTTGGTTGCTACTCTATGCTG 58.743 43.478 0.00 0.00 0.00 4.41
724 797 5.277538 GCATAGTTTGGTTGCTACTCTATGC 60.278 44.000 24.00 24.00 45.84 3.14
827 907 4.159377 TGCTTAGAATTTTGCAACCGAG 57.841 40.909 0.00 0.00 32.12 4.63
871 951 8.378172 TGACCAATCGGATGAATTTTCTATAC 57.622 34.615 0.00 0.00 35.59 1.47
976 1070 2.185004 TGCTTGCAGTTAAGAGGGTC 57.815 50.000 0.00 0.00 0.00 4.46
977 1071 2.508526 CTTGCTTGCAGTTAAGAGGGT 58.491 47.619 0.00 0.00 0.00 4.34
978 1072 1.200948 GCTTGCTTGCAGTTAAGAGGG 59.799 52.381 9.29 0.00 0.00 4.30
979 1073 1.881973 TGCTTGCTTGCAGTTAAGAGG 59.118 47.619 9.29 0.00 38.12 3.69
980 1074 3.631145 TTGCTTGCTTGCAGTTAAGAG 57.369 42.857 9.29 0.00 44.27 2.85
981 1075 3.305539 CCATTGCTTGCTTGCAGTTAAGA 60.306 43.478 9.29 0.00 44.27 2.10
982 1076 2.991190 CCATTGCTTGCTTGCAGTTAAG 59.009 45.455 4.58 0.00 44.27 1.85
1149 1247 2.125106 GGCTGGAAGTGGTAGCCG 60.125 66.667 0.00 0.00 46.47 5.52
1198 1296 2.039405 CAGGTCCAGCAAGAGCAGC 61.039 63.158 7.77 0.00 45.49 5.25
1214 1312 6.036953 GCATAAACAGGAGAAGAATCAGACAG 59.963 42.308 0.00 0.00 0.00 3.51
1222 1320 3.861840 CGGAGCATAAACAGGAGAAGAA 58.138 45.455 0.00 0.00 0.00 2.52
1249 1351 4.321601 CGAGAGCCATATCTAGTTGGAAGG 60.322 50.000 11.64 0.40 34.81 3.46
1254 1356 5.446143 AGAACGAGAGCCATATCTAGTTG 57.554 43.478 6.91 0.00 42.77 3.16
1336 1446 3.715628 AAAATCAGCATCGGCATTACC 57.284 42.857 0.00 0.00 44.61 2.85
1388 1499 3.126686 TGTGTGTTGTCTGTGATGTTGTG 59.873 43.478 0.00 0.00 0.00 3.33
1409 1520 8.783833 TTATCTTTCTTGAATTCTCAGACCTG 57.216 34.615 7.05 0.00 31.69 4.00
1445 1556 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
1446 1557 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
1468 1579 8.964772 GTCTATACTAGTACTCCCTGTCAAAAA 58.035 37.037 4.31 0.00 0.00 1.94
1469 1580 8.334734 AGTCTATACTAGTACTCCCTGTCAAAA 58.665 37.037 4.31 0.00 32.84 2.44
1470 1581 7.870027 AGTCTATACTAGTACTCCCTGTCAAA 58.130 38.462 4.31 0.00 32.84 2.69
1471 1582 7.448915 AGTCTATACTAGTACTCCCTGTCAA 57.551 40.000 4.31 0.00 32.84 3.18
1472 1583 8.192743 CTAGTCTATACTAGTACTCCCTGTCA 57.807 42.308 4.31 0.00 46.90 3.58
1492 1603 7.924947 ACCACAAACTAAACAACTACTCTAGTC 59.075 37.037 0.00 0.00 38.26 2.59
1588 1700 2.255316 GAGAGAGAAAGAAAGCCGTCG 58.745 52.381 0.00 0.00 0.00 5.12
1591 1703 0.995728 GCGAGAGAGAAAGAAAGCCG 59.004 55.000 0.00 0.00 0.00 5.52
1630 1744 1.196354 CAGAAGAAGGAAACAGCTGCG 59.804 52.381 15.27 0.00 0.00 5.18
1641 1755 4.357918 TTCTCAAGGAACCAGAAGAAGG 57.642 45.455 0.00 0.00 0.00 3.46
1650 1764 2.480802 GCTCGACTTTTCTCAAGGAACC 59.519 50.000 0.00 0.00 33.13 3.62
1685 1799 0.109458 TCGTCGTGCTACTGCGAAAT 60.109 50.000 0.00 0.00 43.34 2.17
1698 1812 1.367599 GAGGACTCCATCGTCGTCGT 61.368 60.000 1.33 0.00 38.52 4.34
1839 1954 8.642908 AAAACAAGTTAATTAGAACCAAGCAC 57.357 30.769 0.00 0.00 0.00 4.40
1867 1986 0.393077 AGACACCCAAAGAGACACGG 59.607 55.000 0.00 0.00 0.00 4.94
1868 1987 1.068588 TCAGACACCCAAAGAGACACG 59.931 52.381 0.00 0.00 0.00 4.49
1917 2037 2.938956 ACCATTCGGATCTGGAATCC 57.061 50.000 12.56 0.00 36.35 3.01
1920 2040 2.100252 GTCGTACCATTCGGATCTGGAA 59.900 50.000 12.56 4.25 36.35 3.53
1958 2078 6.999272 ACAGTAGAAGACAGAGACAAGTAGAA 59.001 38.462 0.00 0.00 0.00 2.10
2097 2248 9.811995 TGTGCATTTCGAATAGTACTACTAAAT 57.188 29.630 4.31 6.31 33.89 1.40
2099 2250 9.244799 CATGTGCATTTCGAATAGTACTACTAA 57.755 33.333 4.31 0.00 33.89 2.24
2100 2251 7.381408 GCATGTGCATTTCGAATAGTACTACTA 59.619 37.037 4.31 0.00 41.59 1.82
2101 2252 6.201044 GCATGTGCATTTCGAATAGTACTACT 59.799 38.462 4.31 0.00 41.59 2.57
2102 2253 6.355638 GCATGTGCATTTCGAATAGTACTAC 58.644 40.000 4.31 0.00 41.59 2.73
2131 2282 3.429547 GCCATCCTATCCTATACACTGCG 60.430 52.174 0.00 0.00 0.00 5.18
2165 2316 0.588252 ACAAGTTGCATGCTGTCGAC 59.412 50.000 20.33 9.11 0.00 4.20
2290 2458 0.677731 AGATGATGTTGCCCCACACG 60.678 55.000 0.00 0.00 0.00 4.49
2410 2578 3.727258 TTGGGGAGGATGGTGGCG 61.727 66.667 0.00 0.00 0.00 5.69
2524 2692 3.649277 CTTGACCCACTCGCGGAGG 62.649 68.421 6.13 5.78 33.35 4.30
2680 2848 1.071471 CCGGTACAGGATGGCCATC 59.929 63.158 33.90 33.90 43.62 3.51
2830 2998 1.294138 GTACTTGTAGTGCGGGCCA 59.706 57.895 4.39 0.00 0.00 5.36
2893 3064 1.232621 GGTTGTTGTAGGTGCCGACC 61.233 60.000 0.00 0.00 43.52 4.79
3124 3295 9.630098 CCGTCCTATAATATAAGAGCGTTTTTA 57.370 33.333 0.00 0.00 0.00 1.52
3126 3297 7.889469 TCCGTCCTATAATATAAGAGCGTTTT 58.111 34.615 0.00 0.00 0.00 2.43
3127 3298 7.458409 TCCGTCCTATAATATAAGAGCGTTT 57.542 36.000 0.00 0.00 0.00 3.60
3129 3300 6.095160 CCTTCCGTCCTATAATATAAGAGCGT 59.905 42.308 0.00 0.00 0.00 5.07
3131 3302 7.122353 TGTCCTTCCGTCCTATAATATAAGAGC 59.878 40.741 0.00 0.00 0.00 4.09
3132 3303 8.460428 GTGTCCTTCCGTCCTATAATATAAGAG 58.540 40.741 0.00 0.00 0.00 2.85
3133 3304 7.395489 GGTGTCCTTCCGTCCTATAATATAAGA 59.605 40.741 0.00 0.00 0.00 2.10
3139 3310 3.641906 CTGGTGTCCTTCCGTCCTATAAT 59.358 47.826 0.00 0.00 0.00 1.28
3140 3311 3.028850 CTGGTGTCCTTCCGTCCTATAA 58.971 50.000 0.00 0.00 0.00 0.98
3142 3313 1.006758 TCTGGTGTCCTTCCGTCCTAT 59.993 52.381 0.00 0.00 0.00 2.57
3143 3314 0.406750 TCTGGTGTCCTTCCGTCCTA 59.593 55.000 0.00 0.00 0.00 2.94
3146 3317 1.079750 GCTCTGGTGTCCTTCCGTC 60.080 63.158 0.00 0.00 0.00 4.79
3147 3318 1.194781 ATGCTCTGGTGTCCTTCCGT 61.195 55.000 0.00 0.00 0.00 4.69
3148 3319 0.824109 TATGCTCTGGTGTCCTTCCG 59.176 55.000 0.00 0.00 0.00 4.30
3149 3320 4.564406 CCATATATGCTCTGGTGTCCTTCC 60.564 50.000 7.24 0.00 0.00 3.46
3150 3321 4.284490 TCCATATATGCTCTGGTGTCCTTC 59.716 45.833 7.24 0.00 0.00 3.46
3156 3327 4.879197 TCAGTCCATATATGCTCTGGTG 57.121 45.455 22.94 10.31 32.25 4.17
3159 3330 5.802465 ACCAATCAGTCCATATATGCTCTG 58.198 41.667 19.99 19.99 0.00 3.35
3160 3331 6.183361 ACAACCAATCAGTCCATATATGCTCT 60.183 38.462 7.24 4.86 0.00 4.09
3161 3332 6.000219 ACAACCAATCAGTCCATATATGCTC 59.000 40.000 7.24 2.67 0.00 4.26
3164 3335 5.766670 AGCACAACCAATCAGTCCATATATG 59.233 40.000 5.68 5.68 0.00 1.78
3165 3336 5.766670 CAGCACAACCAATCAGTCCATATAT 59.233 40.000 0.00 0.00 0.00 0.86
3172 3348 0.953727 TGCAGCACAACCAATCAGTC 59.046 50.000 0.00 0.00 0.00 3.51
3360 3536 4.344102 AGCGAGGATTTAGCAATGGTACTA 59.656 41.667 0.00 0.00 0.00 1.82
3368 3544 5.579511 GTGTTACTTAGCGAGGATTTAGCAA 59.420 40.000 0.00 0.00 0.00 3.91
3369 3545 5.107133 GTGTTACTTAGCGAGGATTTAGCA 58.893 41.667 0.00 0.00 0.00 3.49
3370 3546 5.107133 TGTGTTACTTAGCGAGGATTTAGC 58.893 41.667 0.00 0.00 0.00 3.09
3372 3548 5.579511 GCTTGTGTTACTTAGCGAGGATTTA 59.420 40.000 0.00 0.00 0.00 1.40
3374 3550 3.933332 GCTTGTGTTACTTAGCGAGGATT 59.067 43.478 0.00 0.00 0.00 3.01
3375 3551 3.056107 TGCTTGTGTTACTTAGCGAGGAT 60.056 43.478 0.00 0.00 36.43 3.24
3377 3553 2.683968 TGCTTGTGTTACTTAGCGAGG 58.316 47.619 0.00 0.00 36.43 4.63
3380 3556 2.223144 TGCTTGCTTGTGTTACTTAGCG 59.777 45.455 0.00 0.00 36.43 4.26
3381 3557 3.814945 CTGCTTGCTTGTGTTACTTAGC 58.185 45.455 0.00 0.00 0.00 3.09
3384 3560 2.781945 GCTGCTTGCTTGTGTTACTT 57.218 45.000 0.00 0.00 38.95 2.24
3395 3571 1.226974 CATGATGGCAGCTGCTTGC 60.227 57.895 35.82 24.31 43.34 4.01
3396 3572 1.437573 CCATGATGGCAGCTGCTTG 59.562 57.895 35.82 23.43 41.70 4.01
3397 3573 3.935024 CCATGATGGCAGCTGCTT 58.065 55.556 35.82 24.36 41.70 3.91
3406 3582 4.193893 TCGCAGGGGCCATGATGG 62.194 66.667 24.47 7.21 41.55 3.51
3407 3583 2.593725 CTCGCAGGGGCCATGATG 60.594 66.667 24.47 13.53 36.38 3.07
3408 3584 3.092511 ACTCGCAGGGGCCATGAT 61.093 61.111 24.47 0.03 36.38 2.45
3409 3585 4.100084 CACTCGCAGGGGCCATGA 62.100 66.667 24.47 0.00 36.38 3.07
3420 3596 3.418068 GACACTGGCTGCACTCGC 61.418 66.667 0.50 0.00 39.24 5.03
3488 3664 2.126502 CGGAATTGGGCACGCAAC 60.127 61.111 1.93 0.00 0.00 4.17
3544 3720 2.577059 GGGCGTGGACAAGATCGA 59.423 61.111 0.00 0.00 0.00 3.59
3545 3721 2.885644 CGGGCGTGGACAAGATCG 60.886 66.667 0.00 0.00 0.00 3.69
3547 3723 2.047274 CACGGGCGTGGACAAGAT 60.047 61.111 0.00 0.00 42.00 2.40
3566 3742 2.222007 AGCAAGCAAGATCTAGCGAG 57.778 50.000 0.00 0.00 35.48 5.03
3567 3743 2.274437 CAAGCAAGCAAGATCTAGCGA 58.726 47.619 0.00 0.00 35.48 4.93
3627 3814 0.464193 TGATGCGGATGTGTGGATGG 60.464 55.000 0.00 0.00 0.00 3.51
3631 3818 0.179037 AGGATGATGCGGATGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
3640 3827 1.884464 CGGTGGTGAGGATGATGCG 60.884 63.158 0.00 0.00 0.00 4.73
3691 3891 5.224888 ACTACTTGACGAACGATTTTGCTA 58.775 37.500 0.14 0.00 0.00 3.49
3693 3893 4.383679 GACTACTTGACGAACGATTTTGC 58.616 43.478 0.14 0.00 0.00 3.68
3698 3898 2.481568 TGACGACTACTTGACGAACGAT 59.518 45.455 0.14 0.00 37.29 3.73
3699 3899 1.866601 TGACGACTACTTGACGAACGA 59.133 47.619 0.14 0.00 37.29 3.85
3700 3900 2.305252 TGACGACTACTTGACGAACG 57.695 50.000 0.00 0.00 37.29 3.95
3701 3901 2.399754 CGTTGACGACTACTTGACGAAC 59.600 50.000 0.00 0.00 43.02 3.95
3702 3902 2.602933 CCGTTGACGACTACTTGACGAA 60.603 50.000 4.91 0.00 43.02 3.85
3703 3903 1.069703 CCGTTGACGACTACTTGACGA 60.070 52.381 4.91 0.00 43.02 4.20
3704 3904 1.324718 CCGTTGACGACTACTTGACG 58.675 55.000 4.91 0.00 43.02 4.35
3705 3905 1.058404 GCCGTTGACGACTACTTGAC 58.942 55.000 4.91 0.00 43.02 3.18
3706 3906 0.386352 CGCCGTTGACGACTACTTGA 60.386 55.000 4.91 0.00 43.02 3.02
3707 3907 0.662374 ACGCCGTTGACGACTACTTG 60.662 55.000 4.91 0.00 43.02 3.16
3709 3909 1.208614 GACGCCGTTGACGACTACT 59.791 57.895 4.91 0.00 43.02 2.57
3710 3910 1.799121 GGACGCCGTTGACGACTAC 60.799 63.158 4.91 0.00 43.02 2.73
3711 3911 2.562912 GGACGCCGTTGACGACTA 59.437 61.111 4.91 0.00 43.02 2.59
3712 3912 4.695231 CGGACGCCGTTGACGACT 62.695 66.667 4.91 0.00 42.73 4.18
3734 3934 3.716006 CTGGACCAACAGCGTGCG 61.716 66.667 0.00 0.00 0.00 5.34
3740 3940 1.364626 GCATCGCTCTGGACCAACAG 61.365 60.000 0.00 0.00 39.84 3.16
3759 3959 0.311790 AGGAGTGCACGCATTGTTTG 59.688 50.000 22.36 0.00 0.00 2.93
3760 3960 0.593128 GAGGAGTGCACGCATTGTTT 59.407 50.000 22.36 0.00 0.00 2.83
3761 3961 1.568612 CGAGGAGTGCACGCATTGTT 61.569 55.000 22.36 0.00 0.00 2.83
3762 3962 2.029288 CGAGGAGTGCACGCATTGT 61.029 57.895 22.36 3.35 0.00 2.71
3767 3967 1.291877 ATCAAACGAGGAGTGCACGC 61.292 55.000 12.67 12.67 0.00 5.34
3784 3984 3.753797 ACCTCGAAGCTTCTTTGGAAATC 59.246 43.478 25.58 1.33 0.00 2.17
3794 3994 2.586258 TATGAGCACCTCGAAGCTTC 57.414 50.000 16.84 16.84 42.04 3.86
3802 4002 9.973450 CCATTAGTATATGTATATGAGCACCTC 57.027 37.037 0.00 0.00 0.00 3.85
3803 4003 9.715119 TCCATTAGTATATGTATATGAGCACCT 57.285 33.333 0.00 0.00 0.00 4.00
3821 4021 6.769822 CAGAGCAAAATACCTCATCCATTAGT 59.230 38.462 0.00 0.00 0.00 2.24
3822 4022 6.206243 CCAGAGCAAAATACCTCATCCATTAG 59.794 42.308 0.00 0.00 0.00 1.73
3823 4023 6.064060 CCAGAGCAAAATACCTCATCCATTA 58.936 40.000 0.00 0.00 0.00 1.90
3824 4024 4.891756 CCAGAGCAAAATACCTCATCCATT 59.108 41.667 0.00 0.00 0.00 3.16
3825 4025 4.467769 CCAGAGCAAAATACCTCATCCAT 58.532 43.478 0.00 0.00 0.00 3.41
3826 4026 3.889815 CCAGAGCAAAATACCTCATCCA 58.110 45.455 0.00 0.00 0.00 3.41
3827 4027 2.620585 GCCAGAGCAAAATACCTCATCC 59.379 50.000 0.00 0.00 39.53 3.51
3828 4028 3.978718 GCCAGAGCAAAATACCTCATC 57.021 47.619 0.00 0.00 39.53 2.92
3841 4041 1.735920 CACGTCAGACTGCCAGAGC 60.736 63.158 0.00 0.00 40.48 4.09
3842 4042 1.080230 CCACGTCAGACTGCCAGAG 60.080 63.158 0.00 0.00 0.00 3.35
3843 4043 1.527433 CTCCACGTCAGACTGCCAGA 61.527 60.000 0.00 0.00 0.00 3.86
3844 4044 1.080230 CTCCACGTCAGACTGCCAG 60.080 63.158 0.00 0.00 0.00 4.85
3847 4047 1.373497 CACCTCCACGTCAGACTGC 60.373 63.158 0.00 0.00 0.00 4.40
4003 4203 1.738099 CTTCTCGGCCAGGTTGTCG 60.738 63.158 2.24 0.00 0.00 4.35
4042 4242 1.754234 GCCATGCCCGTCCTTGAAT 60.754 57.895 0.00 0.00 0.00 2.57
4106 4306 2.880890 GAGAGAGAGAGAGAGATGTGGC 59.119 54.545 0.00 0.00 0.00 5.01
4125 4325 2.697751 AGATGGACGGGAGATGAAAGAG 59.302 50.000 0.00 0.00 0.00 2.85
4128 4328 5.130311 TGAAATAGATGGACGGGAGATGAAA 59.870 40.000 0.00 0.00 0.00 2.69
4129 4329 4.653801 TGAAATAGATGGACGGGAGATGAA 59.346 41.667 0.00 0.00 0.00 2.57
4130 4330 4.223144 TGAAATAGATGGACGGGAGATGA 58.777 43.478 0.00 0.00 0.00 2.92
4131 4331 4.607293 TGAAATAGATGGACGGGAGATG 57.393 45.455 0.00 0.00 0.00 2.90
4132 4332 4.656112 ACTTGAAATAGATGGACGGGAGAT 59.344 41.667 0.00 0.00 0.00 2.75
4133 4333 4.030913 ACTTGAAATAGATGGACGGGAGA 58.969 43.478 0.00 0.00 0.00 3.71
4135 4335 3.517901 ACACTTGAAATAGATGGACGGGA 59.482 43.478 0.00 0.00 0.00 5.14
4136 4336 3.873910 ACACTTGAAATAGATGGACGGG 58.126 45.455 0.00 0.00 0.00 5.28
4138 4338 7.802738 TGTTTTACACTTGAAATAGATGGACG 58.197 34.615 0.00 0.00 0.00 4.79
4161 4387 8.088365 GCCCATTGAGTTAGAAACTTAAAATGT 58.912 33.333 15.23 0.00 43.03 2.71
4162 4388 7.545615 GGCCCATTGAGTTAGAAACTTAAAATG 59.454 37.037 0.00 8.21 43.03 2.32
4164 4390 6.551601 TGGCCCATTGAGTTAGAAACTTAAAA 59.448 34.615 0.00 0.00 43.03 1.52
4165 4391 6.071984 TGGCCCATTGAGTTAGAAACTTAAA 58.928 36.000 0.00 0.00 43.03 1.52
4166 4392 5.636123 TGGCCCATTGAGTTAGAAACTTAA 58.364 37.500 0.00 0.29 43.03 1.85
4167 4393 5.249780 TGGCCCATTGAGTTAGAAACTTA 57.750 39.130 0.00 0.00 43.03 2.24
4168 4394 4.112634 TGGCCCATTGAGTTAGAAACTT 57.887 40.909 0.00 0.00 43.03 2.66
4172 4398 4.591321 AGAATGGCCCATTGAGTTAGAA 57.409 40.909 15.10 0.00 33.90 2.10
4174 4400 5.665916 AAAAGAATGGCCCATTGAGTTAG 57.334 39.130 15.10 0.00 33.90 2.34
4176 4402 4.980339 AAAAAGAATGGCCCATTGAGTT 57.020 36.364 15.10 1.54 33.90 3.01
4196 4448 3.804036 AGATGACCTGTCGACACAAAAA 58.196 40.909 15.76 0.00 29.82 1.94
4204 4456 1.464734 GGTGAGAGATGACCTGTCGA 58.535 55.000 0.00 0.00 37.96 4.20
4224 4476 0.596859 GTCGGCTTGTATAGACCCGC 60.597 60.000 3.93 0.00 0.00 6.13
4244 4496 1.009335 GTCGACAAACCCGGCAAAC 60.009 57.895 11.55 0.00 0.00 2.93
4289 4541 1.461127 GTACGCACCAAGCTTCTCAAG 59.539 52.381 0.00 0.00 42.61 3.02
4337 4589 3.567530 TCATGCGAAAGAAAATGCACTG 58.432 40.909 0.00 0.00 40.61 3.66
4373 4625 2.032302 CGGAAATCAACGTTGGTCAACA 59.968 45.455 27.02 8.01 41.20 3.33
4392 4644 1.389106 GAACGGTCGATCTGAAAACGG 59.611 52.381 0.00 0.00 0.00 4.44
4393 4645 2.763930 GAACGGTCGATCTGAAAACG 57.236 50.000 0.00 0.00 0.00 3.60
4442 4694 1.543802 CTCTCGATAGGATGCAGGTCC 59.456 57.143 0.00 0.00 38.62 4.46
4501 4753 1.353804 CCCCGTTGTTGAACACGTG 59.646 57.895 15.48 15.48 31.78 4.49
4551 4803 1.500474 TCGGCTTCTTCATCTCCCAT 58.500 50.000 0.00 0.00 0.00 4.00
4569 4821 0.861837 CTTAGGCGCCGTTCATCATC 59.138 55.000 23.20 0.00 0.00 2.92
4578 4830 1.068474 GCATATACACTTAGGCGCCG 58.932 55.000 23.20 9.91 0.00 6.46
4581 4833 5.050091 CCAAGAAAGCATATACACTTAGGCG 60.050 44.000 0.00 0.00 34.24 5.52
4597 4859 4.875536 CCAAAACCAAAACTCCCAAGAAAG 59.124 41.667 0.00 0.00 0.00 2.62
4603 4865 1.872773 AGCCAAAACCAAAACTCCCA 58.127 45.000 0.00 0.00 0.00 4.37
4605 4867 4.142026 ACACTAAGCCAAAACCAAAACTCC 60.142 41.667 0.00 0.00 0.00 3.85
4612 4874 4.810191 AAACAACACTAAGCCAAAACCA 57.190 36.364 0.00 0.00 0.00 3.67
4613 4875 6.759356 ACATAAAACAACACTAAGCCAAAACC 59.241 34.615 0.00 0.00 0.00 3.27
4619 4881 5.379827 GTCGACATAAAACAACACTAAGCC 58.620 41.667 11.55 0.00 0.00 4.35
4621 4883 6.780706 AGGTCGACATAAAACAACACTAAG 57.219 37.500 18.91 0.00 0.00 2.18
4623 4885 6.642131 GTGTAGGTCGACATAAAACAACACTA 59.358 38.462 18.91 1.87 32.77 2.74
4625 4887 5.333568 GGTGTAGGTCGACATAAAACAACAC 60.334 44.000 18.91 18.64 33.80 3.32
4628 4890 4.751098 GTGGTGTAGGTCGACATAAAACAA 59.249 41.667 19.07 8.30 0.00 2.83
4629 4891 4.309099 GTGGTGTAGGTCGACATAAAACA 58.691 43.478 13.94 13.94 0.00 2.83
4630 4892 3.365820 CGTGGTGTAGGTCGACATAAAAC 59.634 47.826 18.91 13.51 0.00 2.43
4634 4896 1.825090 ACGTGGTGTAGGTCGACATA 58.175 50.000 18.91 12.53 0.00 2.29
4635 4897 1.825090 TACGTGGTGTAGGTCGACAT 58.175 50.000 18.91 13.80 0.00 3.06
4636 4898 1.266718 GTTACGTGGTGTAGGTCGACA 59.733 52.381 18.91 0.00 33.75 4.35
4637 4899 1.537202 AGTTACGTGGTGTAGGTCGAC 59.463 52.381 7.13 7.13 33.75 4.20
4638 4900 1.536766 CAGTTACGTGGTGTAGGTCGA 59.463 52.381 0.00 0.00 33.75 4.20
4639 4901 1.536766 TCAGTTACGTGGTGTAGGTCG 59.463 52.381 0.00 0.00 33.75 4.79
4640 4902 3.863142 ATCAGTTACGTGGTGTAGGTC 57.137 47.619 0.00 0.00 33.75 3.85
4641 4903 3.863400 GCAATCAGTTACGTGGTGTAGGT 60.863 47.826 0.00 0.00 33.75 3.08
4642 4904 2.671396 GCAATCAGTTACGTGGTGTAGG 59.329 50.000 0.00 0.00 33.75 3.18
4643 4905 3.585862 AGCAATCAGTTACGTGGTGTAG 58.414 45.455 0.00 0.00 33.75 2.74
4653 4916 5.072040 TCATTCAGACGAGCAATCAGTTA 57.928 39.130 0.00 0.00 0.00 2.24
4670 4933 8.470805 TCTACATACTCAAAGAGGTCTTCATTC 58.529 37.037 0.00 0.00 34.61 2.67
4688 4951 8.821894 CAAATTTCTCTAGCCACTTCTACATAC 58.178 37.037 0.00 0.00 0.00 2.39
4689 4952 8.540388 ACAAATTTCTCTAGCCACTTCTACATA 58.460 33.333 0.00 0.00 0.00 2.29
4690 4953 7.398024 ACAAATTTCTCTAGCCACTTCTACAT 58.602 34.615 0.00 0.00 0.00 2.29
4691 4954 6.769512 ACAAATTTCTCTAGCCACTTCTACA 58.230 36.000 0.00 0.00 0.00 2.74
4702 4965 6.706055 TGCTCGTACAACAAATTTCTCTAG 57.294 37.500 0.00 0.00 0.00 2.43
4723 4986 3.061161 GCGTGGAATCATCATGTTTTTGC 59.939 43.478 0.00 0.00 0.00 3.68
4724 4987 4.325204 CAGCGTGGAATCATCATGTTTTTG 59.675 41.667 0.00 0.00 0.00 2.44
4725 4988 4.022068 ACAGCGTGGAATCATCATGTTTTT 60.022 37.500 0.00 0.00 0.00 1.94
4779 5068 8.103305 AGCTAGACATCAGTGGAAATAAGAAAA 58.897 33.333 0.00 0.00 0.00 2.29
4786 5075 5.690464 AAGAGCTAGACATCAGTGGAAAT 57.310 39.130 0.00 0.00 0.00 2.17
4802 5091 2.498167 CTTGGCACAGTACAAAGAGCT 58.502 47.619 0.00 0.00 42.39 4.09
4803 5092 1.537202 CCTTGGCACAGTACAAAGAGC 59.463 52.381 0.00 0.00 42.39 4.09
4804 5093 2.154462 CCCTTGGCACAGTACAAAGAG 58.846 52.381 0.00 0.00 42.39 2.85
4805 5094 1.771854 TCCCTTGGCACAGTACAAAGA 59.228 47.619 0.00 0.00 42.39 2.52
4818 5110 3.597255 CATCATCGATCTCATCCCTTGG 58.403 50.000 0.00 0.00 0.00 3.61
4822 5114 4.462508 TTAGCATCATCGATCTCATCCC 57.537 45.455 0.00 0.00 0.00 3.85
4905 5197 1.000163 GTGCTTCTGACTTCACCGAGA 60.000 52.381 0.00 0.00 0.00 4.04
4936 5255 2.884639 AGAAGGTTGGTGAAAACATCCG 59.115 45.455 0.00 0.00 33.84 4.18
4941 5260 3.621268 GCCAAAAGAAGGTTGGTGAAAAC 59.379 43.478 5.18 0.00 46.18 2.43
4943 5262 2.169561 GGCCAAAAGAAGGTTGGTGAAA 59.830 45.455 0.00 0.00 46.18 2.69
4949 5268 3.140623 CCAAATGGCCAAAAGAAGGTTG 58.859 45.455 10.96 4.31 0.00 3.77
4975 5294 1.730547 GCGTGCACCATGTTTCTGC 60.731 57.895 12.15 1.12 0.00 4.26
4998 5317 6.262601 ACGTACACATGCATTAAAAATAGGC 58.737 36.000 0.00 0.00 0.00 3.93
5029 5351 5.123186 CCCTGTGCATTTTTCGTTCACTATA 59.877 40.000 0.00 0.00 0.00 1.31
5057 5379 0.247460 TAGCAGCTTGTCGTGCATCT 59.753 50.000 0.00 0.00 42.47 2.90
5107 5429 9.959749 ACTTAATCGCAAAAGAACAAGAATAAA 57.040 25.926 0.00 0.00 0.00 1.40
5110 5432 6.863126 CCACTTAATCGCAAAAGAACAAGAAT 59.137 34.615 0.00 0.00 0.00 2.40
5112 5434 5.298276 ACCACTTAATCGCAAAAGAACAAGA 59.702 36.000 0.00 0.00 0.00 3.02
5113 5435 5.399301 CACCACTTAATCGCAAAAGAACAAG 59.601 40.000 0.00 0.00 0.00 3.16
5115 5437 4.791411 GCACCACTTAATCGCAAAAGAACA 60.791 41.667 0.00 0.00 0.00 3.18
5116 5438 3.668656 GCACCACTTAATCGCAAAAGAAC 59.331 43.478 0.00 0.00 0.00 3.01
5117 5439 3.316588 TGCACCACTTAATCGCAAAAGAA 59.683 39.130 0.00 0.00 0.00 2.52
5118 5440 2.881513 TGCACCACTTAATCGCAAAAGA 59.118 40.909 0.00 0.00 0.00 2.52
5119 5441 3.058293 TCTGCACCACTTAATCGCAAAAG 60.058 43.478 0.00 0.00 31.10 2.27
5126 5448 4.884164 AGGCTTAATCTGCACCACTTAATC 59.116 41.667 0.00 0.00 0.00 1.75
5128 5450 4.301072 AGGCTTAATCTGCACCACTTAA 57.699 40.909 0.00 0.00 0.00 1.85
5146 5468 1.515081 TTGTGGCGTGTTAGTAAGGC 58.485 50.000 0.00 0.00 0.00 4.35
5148 5470 4.806342 ACTTTTGTGGCGTGTTAGTAAG 57.194 40.909 0.00 0.00 0.00 2.34
5158 5480 2.006888 ACCGATGATACTTTTGTGGCG 58.993 47.619 0.00 0.00 0.00 5.69
5163 5485 6.683974 AGATTCCAACCGATGATACTTTTG 57.316 37.500 0.00 0.00 0.00 2.44
5172 5494 4.096382 CCTTTACCAAGATTCCAACCGATG 59.904 45.833 0.00 0.00 30.57 3.84
5176 5498 6.008331 ACTAACCTTTACCAAGATTCCAACC 58.992 40.000 0.00 0.00 30.57 3.77
5189 5511 9.591792 CTACATAAACCTACCACTAACCTTTAC 57.408 37.037 0.00 0.00 0.00 2.01
5190 5512 9.325248 ACTACATAAACCTACCACTAACCTTTA 57.675 33.333 0.00 0.00 0.00 1.85
5213 5535 5.421740 TGGTTATCCCACTACCCATACTA 57.578 43.478 0.00 0.00 38.72 1.82
5247 5569 7.010460 CCCTTGTGCTTTTCTTTTCAAACTTAG 59.990 37.037 0.00 0.00 0.00 2.18
5254 5576 4.201970 CGTACCCTTGTGCTTTTCTTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
5289 5613 4.600012 AAGCTTTTTCACGATGATACGG 57.400 40.909 0.00 0.00 37.61 4.02
5298 5622 4.911610 CAGGACAACATAAGCTTTTTCACG 59.088 41.667 3.20 0.00 0.00 4.35
5299 5623 6.072112 TCAGGACAACATAAGCTTTTTCAC 57.928 37.500 3.20 0.00 0.00 3.18
5302 5626 7.781056 TCTTTTCAGGACAACATAAGCTTTTT 58.219 30.769 3.20 0.00 0.00 1.94
5362 5692 4.382291 ACATTTGTTGTTAGTCGTAGGCA 58.618 39.130 0.00 0.00 33.74 4.75
5368 5699 9.325150 CCTTTACATTACATTTGTTGTTAGTCG 57.675 33.333 0.00 0.00 39.87 4.18
5383 5714 6.091713 AGACGTTGTATGTGCCTTTACATTAC 59.908 38.462 0.00 0.00 41.31 1.89
5404 5735 1.879380 TGCACCTTTTTGGATGAGACG 59.121 47.619 0.00 0.00 39.71 4.18
5405 5736 5.841957 ATATGCACCTTTTTGGATGAGAC 57.158 39.130 0.00 0.00 39.71 3.36
5433 5764 4.569162 TCGGCCGTCACAGATTTATTTTAG 59.431 41.667 27.15 0.00 0.00 1.85
5444 5775 2.324330 TGCAATTCGGCCGTCACAG 61.324 57.895 27.15 13.57 0.00 3.66
5468 5803 2.042520 TTTGTGCCGTGCAGTTCGAC 62.043 55.000 0.00 0.00 40.08 4.20
5469 5804 1.369839 TTTTGTGCCGTGCAGTTCGA 61.370 50.000 0.00 0.00 40.08 3.71
5501 5836 6.700520 GCGCTACCAAAACAATACTAGTAGAT 59.299 38.462 8.85 0.00 0.00 1.98
5502 5837 6.038356 GCGCTACCAAAACAATACTAGTAGA 58.962 40.000 8.85 0.00 0.00 2.59
5503 5838 5.808540 TGCGCTACCAAAACAATACTAGTAG 59.191 40.000 9.73 0.00 0.00 2.57
5505 5840 4.571919 TGCGCTACCAAAACAATACTAGT 58.428 39.130 9.73 0.00 0.00 2.57
5506 5841 5.734855 ATGCGCTACCAAAACAATACTAG 57.265 39.130 9.73 0.00 0.00 2.57
5508 5843 7.281324 TGTTATATGCGCTACCAAAACAATACT 59.719 33.333 9.73 0.00 0.00 2.12
5509 5844 7.375017 GTGTTATATGCGCTACCAAAACAATAC 59.625 37.037 9.73 0.00 0.00 1.89
5532 5870 8.301720 TGATTTCAACTACTAGATTACACGTGT 58.698 33.333 26.52 26.52 0.00 4.49
5543 5881 6.455647 TGTGACCTGTGATTTCAACTACTAG 58.544 40.000 0.00 0.00 0.00 2.57
5557 5898 6.481976 TGTCTTACTATTTGTTGTGACCTGTG 59.518 38.462 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.