AutoCloner

Multiple sequence alignment - TraesCS4B01G356200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G356200	chr4B	100.000	2684	0	0	1	2684	646871753	646874436	0.000000e+00	4957.0
1	TraesCS4B01G356200	chr4D	92.687	1299	69	10	1398	2684	502553803	502555087	0.000000e+00	1849.0
2	TraesCS4B01G356200	chr4D	93.785	724	37	4	677	1399	502553031	502553747	0.000000e+00	1081.0
3	TraesCS4B01G356200	chr5A	93.902	1230	65	6	1462	2684	685875875	685877101	0.000000e+00	1847.0
4	TraesCS4B01G356200	chr5A	91.922	619	45	3	761	1375	685875254	685875871	0.000000e+00	861.0
5	TraesCS4B01G356200	chr2D	94.991	579	27	2	18	596	145421027	145420451	0.000000e+00	907.0
6	TraesCS4B01G356200	chr2D	92.988	599	40	2	3	601	176090795	176091391	0.000000e+00	872.0
7	TraesCS4B01G356200	chr2D	92.857	602	42	1	3	604	620415907	620415307	0.000000e+00	872.0
8	TraesCS4B01G356200	chr2D	85.714	77	6	4	601	672	465758335	465758259	2.870000e-10	76.8
9	TraesCS4B01G356200	chr7D	93.355	602	38	2	3	604	276326712	276326113	0.000000e+00	889.0
10	TraesCS4B01G356200	chr7D	93.189	602	40	1	3	604	154140552	154139952	0.000000e+00	883.0
11	TraesCS4B01G356200	chr7D	92.988	599	40	2	3	601	483542055	483542651	0.000000e+00	872.0
12	TraesCS4B01G356200	chr7D	87.500	72	3	4	601	667	632213479	632213409	7.970000e-11	78.7
13	TraesCS4B01G356200	chr7D	85.507	69	8	1	601	667	632213775	632213707	1.330000e-08	71.3
14	TraesCS4B01G356200	chr6D	93.023	602	40	2	3	604	351085977	351085378	0.000000e+00	878.0
15	TraesCS4B01G356200	chr6D	85.938	64	4	4	601	659	264450973	264450910	2.230000e-06	63.9
16	TraesCS4B01G356200	chr6A	93.023	602	40	2	3	604	130778572	130777973	0.000000e+00	878.0
17	TraesCS4B01G356200	chr3A	93.000	600	38	4	3	601	422571997	422572593	0.000000e+00	872.0
18	TraesCS4B01G356200	chr2B	96.429	56	2	0	1398	1453	789455508	789455453	2.850000e-15	93.5
19	TraesCS4B01G356200	chr3B	90.278	72	2	3	601	667	753724723	753724794	3.680000e-14	89.8
20	TraesCS4B01G356200	chr1D	94.643	56	3	0	1398	1453	445550709	445550764	1.320000e-13	87.9
21	TraesCS4B01G356200	chr1B	88.571	70	4	3	601	667	572902271	572902203	6.160000e-12	82.4
22	TraesCS4B01G356200	chr4A	87.500	72	3	4	601	667	670841050	670841120	7.970000e-11	78.7
23	TraesCS4B01G356200	chr5D	85.526	76	6	3	601	671	426154996	426154921	1.030000e-09	75.0
24	TraesCS4B01G356200	chr7A	84.416	77	7	3	601	672	179444265	179444341	1.330000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G356200	chr4B	646871753	646874436	2683	False	4957	4957	100.000	1	2684	1	chr4B.!!$F1	2683
1	TraesCS4B01G356200	chr4D	502553031	502555087	2056	False	1465	1849	93.236	677	2684	2	chr4D.!!$F1	2007
2	TraesCS4B01G356200	chr5A	685875254	685877101	1847	False	1354	1847	92.912	761	2684	2	chr5A.!!$F1	1923
3	TraesCS4B01G356200	chr2D	145420451	145421027	576	True	907	907	94.991	18	596	1	chr2D.!!$R1	578
4	TraesCS4B01G356200	chr2D	176090795	176091391	596	False	872	872	92.988	3	601	1	chr2D.!!$F1	598
5	TraesCS4B01G356200	chr2D	620415307	620415907	600	True	872	872	92.857	3	604	1	chr2D.!!$R3	601
6	TraesCS4B01G356200	chr7D	276326113	276326712	599	True	889	889	93.355	3	604	1	chr7D.!!$R2	601
7	TraesCS4B01G356200	chr7D	154139952	154140552	600	True	883	883	93.189	3	604	1	chr7D.!!$R1	601
8	TraesCS4B01G356200	chr7D	483542055	483542651	596	False	872	872	92.988	3	601	1	chr7D.!!$F1	598
9	TraesCS4B01G356200	chr6D	351085378	351085977	599	True	878	878	93.023	3	604	1	chr6D.!!$R2	601
10	TraesCS4B01G356200	chr6A	130777973	130778572	599	True	878	878	93.023	3	604	1	chr6A.!!$R1	601
11	TraesCS4B01G356200	chr3A	422571997	422572593	596	False	872	872	93.000	3	601	1	chr3A.!!$F1	598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
64	65	0.620556	CCAAGGGGAGTGCACATACT	59.379	55.000	21.04	8.55	35.59	2.12	F
771	773	0.667792	AAGAGCGGTTTGACGAGAGC	60.668	55.000	0.00	0.00	35.47	4.09	F
1062	1066	1.080772	CTTGCTCGTCGTGGCTACA	60.081	57.895	0.00	0.00	0.00	2.74	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1441	1503	2.034939	CACGCATATGTACCGGTAGGAA	59.965	50.000	16.41	4.12	41.02	3.36	R
1647	1709	3.381983	ATGCAGCGTCGGTGGAGA	61.382	61.111	24.44	0.00	34.53	3.71	R
2567	2644	3.456380	AAAGTACCAATGAGGGCATGT	57.544	42.857	0.00	0.00	43.89	3.21	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	59	2.203480	GTTGCCAAGGGGAGTGCA	60.203	61.111	0.00	0.00	35.59	4.57
64	65	0.620556	CCAAGGGGAGTGCACATACT	59.379	55.000	21.04	8.55	35.59	2.12
117	118	4.885907	GGTGATGATGGAGTTGTTGATGAT	59.114	41.667	0.00	0.00	0.00	2.45
252	253	3.258123	ACTCACAGTTTTGGTTTTGCAGT	59.742	39.130	0.00	0.00	0.00	4.40
254	255	4.636249	TCACAGTTTTGGTTTTGCAGTTT	58.364	34.783	0.00	0.00	0.00	2.66
269	270	8.678199	GTTTTGCAGTTTATAGATCTAGGCTTT	58.322	33.333	8.70	0.00	0.00	3.51
279	280	3.966006	AGATCTAGGCTTTGAGATGCTCA	59.034	43.478	3.04	0.00	38.87	4.26
294	295	6.882678	TGAGATGCTCAATTTTCTCATGAAGA	59.117	34.615	0.00	0.00	39.61	2.87
318	319	2.471815	AGATGACCTCCCCGATGTTA	57.528	50.000	0.00	0.00	0.00	2.41
321	322	4.489737	AGATGACCTCCCCGATGTTATTA	58.510	43.478	0.00	0.00	0.00	0.98
348	349	3.006110	CCAGCTTGTGATTGTTGGTGAAT	59.994	43.478	0.00	0.00	31.29	2.57
361	362	1.138859	TGGTGAATTCCGCGATCATCT	59.861	47.619	8.23	0.00	0.00	2.90
434	435	0.737367	TGCTCCATTGCTTCGAGTCG	60.737	55.000	6.09	6.09	0.00	4.18
580	581	2.292785	AAAGTTGTCCTTGGGGGCGT	62.293	55.000	0.00	0.00	40.80	5.68
582	583	2.203422	TTGTCCTTGGGGGCGTTG	60.203	61.111	0.00	0.00	40.80	4.10
587	588	4.740822	CTTGGGGGCGTTGGGAGG	62.741	72.222	0.00	0.00	0.00	4.30
596	597	1.589630	CGTTGGGAGGACGTCATGA	59.410	57.895	18.91	0.00	35.88	3.07
601	602	2.118679	TGGGAGGACGTCATGATGATT	58.881	47.619	21.75	6.15	0.00	2.57
604	605	4.163268	TGGGAGGACGTCATGATGATTTAA	59.837	41.667	21.75	0.00	0.00	1.52
605	606	5.123227	GGGAGGACGTCATGATGATTTAAA	58.877	41.667	21.75	0.00	0.00	1.52
606	607	5.007724	GGGAGGACGTCATGATGATTTAAAC	59.992	44.000	21.75	5.34	0.00	2.01
607	608	5.007724	GGAGGACGTCATGATGATTTAAACC	59.992	44.000	21.75	10.57	0.00	3.27
608	609	4.881850	AGGACGTCATGATGATTTAAACCC	59.118	41.667	21.75	8.51	0.00	4.11
609	610	4.881850	GGACGTCATGATGATTTAAACCCT	59.118	41.667	21.75	0.00	0.00	4.34
610	611	6.053005	GGACGTCATGATGATTTAAACCCTA	58.947	40.000	21.75	0.00	0.00	3.53
611	612	6.540914	GGACGTCATGATGATTTAAACCCTAA	59.459	38.462	21.75	0.00	0.00	2.69
612	613	7.316544	ACGTCATGATGATTTAAACCCTAAC	57.683	36.000	21.75	0.00	0.00	2.34
613	614	7.110155	ACGTCATGATGATTTAAACCCTAACT	58.890	34.615	21.75	0.00	0.00	2.24
614	615	7.610305	ACGTCATGATGATTTAAACCCTAACTT	59.390	33.333	21.75	0.00	0.00	2.66
615	616	8.458843	CGTCATGATGATTTAAACCCTAACTTT	58.541	33.333	9.46	0.00	0.00	2.66
674	675	8.958119	TGTGTAGAATATGAGTATTTTGTCCC	57.042	34.615	0.00	0.00	30.75	4.46
675	676	8.544622	TGTGTAGAATATGAGTATTTTGTCCCA	58.455	33.333	0.00	0.00	30.75	4.37
706	707	3.798646	CACCGCATGCAAAACTCAT	57.201	47.368	19.57	0.00	0.00	2.90
756	758	6.642707	AATTGGATAGTAGTCCGAGAAGAG	57.357	41.667	0.00	0.00	41.35	2.85
771	773	0.667792	AAGAGCGGTTTGACGAGAGC	60.668	55.000	0.00	0.00	35.47	4.09
814	816	1.861982	TAGAACACCTAGGGACAGCC	58.138	55.000	14.81	0.00	0.00	4.85
826	828	1.181098	GGACAGCCCAACATGTTGCT	61.181	55.000	29.42	22.36	39.16	3.91
962	966	3.196254	AGGATTTTGGTGCATGATTGTCC	59.804	43.478	0.00	0.00	0.00	4.02
1062	1066	1.080772	CTTGCTCGTCGTGGCTACA	60.081	57.895	0.00	0.00	0.00	2.74
1114	1118	5.356882	TCCTTTCTTTTTGATACACTGCG	57.643	39.130	0.00	0.00	0.00	5.18
1116	1120	4.320494	CCTTTCTTTTTGATACACTGCGCT	60.320	41.667	9.73	0.00	0.00	5.92
1121	1125	5.458452	TCTTTTTGATACACTGCGCTTTTTG	59.542	36.000	9.73	2.57	0.00	2.44
1122	1126	3.980646	TTGATACACTGCGCTTTTTGT	57.019	38.095	9.73	8.90	0.00	2.83
1125	1129	5.425577	TGATACACTGCGCTTTTTGTTTA	57.574	34.783	9.73	0.00	0.00	2.01
1190	1194	5.835113	TGAGCTTTCACTTTTGCTTTACT	57.165	34.783	0.00	0.00	35.76	2.24
1309	1315	7.016170	AGCACAAAAGGGGTGTCTTAAAATATT	59.984	33.333	0.00	0.00	38.51	1.28
1350	1356	8.379457	AGTAATCCAGTGAGACAAAAACTTAC	57.621	34.615	0.00	0.00	0.00	2.34
1378	1384	4.282950	ACATCATCATGCGTGATTTGAC	57.717	40.909	25.07	0.00	42.37	3.18
1380	1386	4.034858	ACATCATCATGCGTGATTTGACTC	59.965	41.667	25.07	0.00	42.37	3.36
1441	1503	9.066892	TGTCTTACATTTTTGCACTAAAGATCT	57.933	29.630	0.00	0.00	0.00	2.75
1449	1511	4.386867	TGCACTAAAGATCTTCCTACCG	57.613	45.455	8.78	0.00	0.00	4.02
1517	1579	3.322254	TGGGTGTTTTTGTGTTGTTCAGT	59.678	39.130	0.00	0.00	0.00	3.41
1524	1586	1.355210	GTGTTGTTCAGTGGTGGCG	59.645	57.895	0.00	0.00	0.00	5.69
1647	1709	3.637273	GGCGGGGAGTGTGAAGGT	61.637	66.667	0.00	0.00	0.00	3.50
1839	1903	4.935352	TTTTCACATGTTCCTTTGGGAG	57.065	40.909	0.00	0.00	43.29	4.30
1925	1995	5.983540	TGTAAACTTGAAGTTGGCCATTTT	58.016	33.333	11.83	3.65	38.66	1.82
1992	2062	5.527214	TCATGCAATGCAGTATTGTACTACC	59.473	40.000	14.98	0.00	46.21	3.18
2003	2073	7.628366	GCAGTATTGTACTACCAGTAACCGTAA	60.628	40.741	0.00	0.00	37.23	3.18
2096	2167	3.367190	CGATTTTGGTGGTTGCATGATCA	60.367	43.478	0.00	0.00	0.00	2.92
2183	2254	8.673711	CCACCAAAGAAATCAATATCGTTTCTA	58.326	33.333	9.16	0.00	40.29	2.10
2234	2305	5.577164	GCCGTGACTAAATTATCGATATGCT	59.423	40.000	5.84	0.00	0.00	3.79
2357	2433	8.696410	ATCGTTTCACAGTTTTGTTATTTGTT	57.304	26.923	0.00	0.00	34.62	2.83
2362	2438	8.818141	TTCACAGTTTTGTTATTTGTTGAACA	57.182	26.923	0.00	0.00	34.62	3.18
2395	2471	9.123902	CAAATGATTATCTCCAAATGACCACTA	57.876	33.333	0.00	0.00	0.00	2.74
2442	2518	7.609097	AGATTCATGTAGATGCTAAGAGGAA	57.391	36.000	0.00	0.00	0.00	3.36
2450	2526	8.768501	TGTAGATGCTAAGAGGAAGAGAAATA	57.231	34.615	0.00	0.00	0.00	1.40
2455	2531	9.153721	GATGCTAAGAGGAAGAGAAATATGATG	57.846	37.037	0.00	0.00	0.00	3.07
2502	2578	6.845758	AGTTCATTGTGAAATCACCATCAT	57.154	33.333	10.83	0.00	45.88	2.45
2532	2608	1.204704	TGAGCCCTTGTAGACATCGTG	59.795	52.381	0.00	0.00	0.00	4.35
2567	2644	0.973632	TTCTTAGCCTTGACTCGCCA	59.026	50.000	0.00	0.00	0.00	5.69
2581	2658	2.777972	CGCCACATGCCCTCATTGG	61.778	63.158	0.00	0.00	35.67	3.16
2647	2724	4.715527	AAGACGTACATGTTCTACTCCC	57.284	45.455	2.30	0.00	0.00	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	0.316204	CCCGGTATCGTATCACCACC	59.684	60.000	0.00	0.00	34.25	4.61
1	2	0.316204	CCCCGGTATCGTATCACCAC	59.684	60.000	0.00	0.00	34.25	4.16
64	65	8.474831	TCCGAAGAAAGAGACATAAATACATGA	58.525	33.333	0.00	0.00	0.00	3.07
117	118	3.118261	GGAAGATGGATGACAAGCCTACA	60.118	47.826	0.18	0.00	31.06	2.74
227	228	6.320164	ACTGCAAAACCAAAACTGTGAGTATA	59.680	34.615	0.00	0.00	0.00	1.47
252	253	8.200024	AGCATCTCAAAGCCTAGATCTATAAA	57.800	34.615	2.11	0.00	29.93	1.40
254	255	6.950619	TGAGCATCTCAAAGCCTAGATCTATA	59.049	38.462	2.11	0.00	37.57	1.31
294	295	1.879575	TCGGGGAGGTCATCTTCAAT	58.120	50.000	0.00	0.00	0.00	2.57
304	305	2.404559	TGCTAATAACATCGGGGAGGT	58.595	47.619	0.00	0.00	0.00	3.85
348	349	2.602257	ATCACAAGATGATCGCGGAA	57.398	45.000	6.13	0.00	45.52	4.30
361	362	3.064207	GTGGACTCAACGCTAATCACAA	58.936	45.455	0.00	0.00	0.00	3.33
564	565	2.203437	AACGCCCCCAAGGACAAC	60.203	61.111	0.00	0.00	38.24	3.32
580	581	1.567357	TCATCATGACGTCCTCCCAA	58.433	50.000	14.12	0.00	0.00	4.12
582	583	2.918712	AATCATCATGACGTCCTCCC	57.081	50.000	14.12	0.00	0.00	4.30
587	588	7.280205	AGTTAGGGTTTAAATCATCATGACGTC	59.720	37.037	9.11	9.11	0.00	4.34
648	649	9.561069	GGGACAAAATACTCATATTCTACACAT	57.439	33.333	0.00	0.00	30.27	3.21
649	650	8.544622	TGGGACAAAATACTCATATTCTACACA	58.455	33.333	0.00	0.00	31.92	3.72
650	651	8.958119	TGGGACAAAATACTCATATTCTACAC	57.042	34.615	0.00	0.00	31.92	2.90
692	693	6.724694	TGGAAAATAATGAGTTTTGCATGC	57.275	33.333	11.82	11.82	40.41	4.06
730	732	7.848128	TCTTCTCGGACTACTATCCAATTTTT	58.152	34.615	0.00	0.00	38.87	1.94
731	733	7.419711	TCTTCTCGGACTACTATCCAATTTT	57.580	36.000	0.00	0.00	38.87	1.82
732	734	6.461788	GCTCTTCTCGGACTACTATCCAATTT	60.462	42.308	0.00	0.00	38.87	1.82
752	754	0.667792	GCTCTCGTCAAACCGCTCTT	60.668	55.000	0.00	0.00	0.00	2.85
756	758	0.389426	TTAGGCTCTCGTCAAACCGC	60.389	55.000	0.00	0.00	0.00	5.68
814	816	3.192001	AGTCATAAGCAGCAACATGTTGG	59.808	43.478	33.56	21.67	40.74	3.77
826	828	3.931907	AATAGTGGCCAGTCATAAGCA	57.068	42.857	18.68	0.00	0.00	3.91
949	953	5.363101	TCTGATAAGAGGACAATCATGCAC	58.637	41.667	0.00	0.00	0.00	4.57
950	954	5.364735	TCTCTGATAAGAGGACAATCATGCA	59.635	40.000	7.28	0.00	36.62	3.96
962	966	6.918626	TGTGTGAACTTCTCTCTGATAAGAG	58.081	40.000	0.00	0.00	43.50	2.85
975	979	5.858581	GGATTGCAAGTTATGTGTGAACTTC	59.141	40.000	4.94	0.00	43.59	3.01
981	985	5.313520	TCATGGATTGCAAGTTATGTGTG	57.686	39.130	4.94	0.00	0.00	3.82
1062	1066	7.690256	AGTAAATCCAGTGTAAATTCTCACCT	58.310	34.615	8.64	0.00	35.45	4.00
1157	1161	5.557576	AGTGAAAGCTCATATCTGCCATA	57.442	39.130	0.00	0.00	33.05	2.74
1190	1194	4.444876	GGGCTCATGTGATTTTCTAGCCTA	60.445	45.833	13.94	0.00	45.79	3.93
1281	1285	3.306472	AAGACACCCCTTTTGTGCTTA	57.694	42.857	0.00	0.00	37.22	3.09
1325	1331	7.170998	CGTAAGTTTTTGTCTCACTGGATTACT	59.829	37.037	0.00	0.00	0.00	2.24
1350	1356	4.475944	TCACGCATGATGATGTATCTACG	58.524	43.478	0.00	0.00	36.71	3.51
1390	1396	7.704899	CACCTACGTATGTCTCATGTTATTTCA	59.295	37.037	0.01	0.00	0.00	2.69
1391	1397	7.705325	ACACCTACGTATGTCTCATGTTATTTC	59.295	37.037	0.01	0.00	0.00	2.17
1394	1400	6.710597	ACACCTACGTATGTCTCATGTTAT	57.289	37.500	0.01	0.00	0.00	1.89
1395	1401	6.127810	GACACCTACGTATGTCTCATGTTA	57.872	41.667	17.98	0.00	41.69	2.41
1410	1472	6.313744	AGTGCAAAAATGTAAGACACCTAC	57.686	37.500	0.00	0.00	0.00	3.18
1441	1503	2.034939	CACGCATATGTACCGGTAGGAA	59.965	50.000	16.41	4.12	41.02	3.36
1449	1511	5.673337	ACATCAAATCACGCATATGTACC	57.327	39.130	4.29	0.00	0.00	3.34
1502	1564	2.353208	GCCACCACTGAACAACACAAAA	60.353	45.455	0.00	0.00	0.00	2.44
1647	1709	3.381983	ATGCAGCGTCGGTGGAGA	61.382	61.111	24.44	0.00	34.53	3.71
1818	1882	4.541705	TCTCCCAAAGGAACATGTGAAAA	58.458	39.130	0.00	0.00	43.40	2.29
1819	1883	4.177537	TCTCCCAAAGGAACATGTGAAA	57.822	40.909	0.00	0.00	43.40	2.69
1820	1884	3.874383	TCTCCCAAAGGAACATGTGAA	57.126	42.857	0.00	0.00	43.40	3.18
1821	1885	4.081406	CAATCTCCCAAAGGAACATGTGA	58.919	43.478	0.00	0.00	43.40	3.58
1837	1901	4.241590	TCAAATGCACAACCACAATCTC	57.758	40.909	0.00	0.00	0.00	2.75
1839	1903	4.914312	CATCAAATGCACAACCACAATC	57.086	40.909	0.00	0.00	0.00	2.67
1992	2062	7.031372	TGCTACTAGAAACATTACGGTTACTG	58.969	38.462	0.00	0.00	0.00	2.74
2025	2095	5.230726	TGTCAACGTTCGAAGTTAGAGAAAC	59.769	40.000	0.00	0.16	38.46	2.78
2096	2167	4.808414	TCATTTGAGATCTCCGTGTTCT	57.192	40.909	20.03	0.00	0.00	3.01
2147	2218	4.589216	TTTCTTTGGTGGAGCTGAAATG	57.411	40.909	0.00	0.00	0.00	2.32
2183	2254	6.463995	TGGACACTAGCAAAAATTTCAAGT	57.536	33.333	0.00	0.00	0.00	3.16
2234	2305	7.637229	TCAAAATAACGTTGTCGATGGTTTTA	58.363	30.769	11.99	0.00	40.62	1.52
2357	2433	8.469200	GGAGATAATCATTTGTTCCATTGTTCA	58.531	33.333	0.00	0.00	0.00	3.18
2362	2438	9.826574	CATTTGGAGATAATCATTTGTTCCATT	57.173	29.630	0.00	0.00	33.63	3.16
2395	2471	8.859236	TCTTGAAGTTTGATCTGATGATTCTT	57.141	30.769	0.00	0.00	32.19	2.52
2502	2578	5.938125	GTCTACAAGGGCTCAATTGACTTAA	59.062	40.000	3.38	0.00	0.00	1.85
2567	2644	3.456380	AAAGTACCAATGAGGGCATGT	57.544	42.857	0.00	0.00	43.89	3.21
2581	2658	5.035443	CACGACATGGTCTAGCTAAAGTAC	58.965	45.833	0.00	0.00	0.00	2.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.