Multiple sequence alignment - TraesCS4B01G355700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G355700 chr4B 100.000 3635 0 0 1 3635 646660685 646657051 0.000000e+00 6713
1 TraesCS4B01G355700 chr4B 79.902 408 63 15 2147 2544 50251790 50252188 7.680000e-72 281
2 TraesCS4B01G355700 chr4B 75.820 579 88 31 2893 3458 50251647 50251108 2.800000e-61 246
3 TraesCS4B01G355700 chr4B 86.310 168 16 4 3468 3634 50245925 50245764 3.730000e-40 176
4 TraesCS4B01G355700 chr4D 90.053 3217 220 59 27 3184 502413817 502410642 0.000000e+00 4076
5 TraesCS4B01G355700 chr4D 88.532 436 34 9 3204 3635 502410588 502410165 6.960000e-142 514
6 TraesCS4B01G355700 chr5A 92.061 2431 136 33 27 2427 685539660 685537257 0.000000e+00 3367
7 TraesCS4B01G355700 chr5A 86.697 436 40 10 3204 3635 685536487 685536066 5.500000e-128 468
8 TraesCS4B01G355700 chr2A 90.163 1413 136 3 984 2396 536623633 536625042 0.000000e+00 1836
9 TraesCS4B01G355700 chr2B 89.533 1414 139 9 984 2396 472898477 472899882 0.000000e+00 1783
10 TraesCS4B01G355700 chr2D 89.849 1389 134 7 1008 2396 398780042 398781423 0.000000e+00 1777
11 TraesCS4B01G355700 chr3B 79.387 587 90 22 3066 3634 144080103 144080676 5.690000e-103 385


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G355700 chr4B 646657051 646660685 3634 True 6713.0 6713 100.0000 1 3635 1 chr4B.!!$R3 3634
1 TraesCS4B01G355700 chr4B 50251108 50251647 539 True 246.0 246 75.8200 2893 3458 1 chr4B.!!$R2 565
2 TraesCS4B01G355700 chr4D 502410165 502413817 3652 True 2295.0 4076 89.2925 27 3635 2 chr4D.!!$R1 3608
3 TraesCS4B01G355700 chr5A 685536066 685539660 3594 True 1917.5 3367 89.3790 27 3635 2 chr5A.!!$R1 3608
4 TraesCS4B01G355700 chr2A 536623633 536625042 1409 False 1836.0 1836 90.1630 984 2396 1 chr2A.!!$F1 1412
5 TraesCS4B01G355700 chr2B 472898477 472899882 1405 False 1783.0 1783 89.5330 984 2396 1 chr2B.!!$F1 1412
6 TraesCS4B01G355700 chr2D 398780042 398781423 1381 False 1777.0 1777 89.8490 1008 2396 1 chr2D.!!$F1 1388
7 TraesCS4B01G355700 chr3B 144080103 144080676 573 False 385.0 385 79.3870 3066 3634 1 chr3B.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 264 0.180406 ACCTTGCGTGTTCTGGAAGT 59.820 50.0 0.0 0.0 33.45 3.01 F
249 268 0.750249 TGCGTGTTCTGGAAGTCTGA 59.250 50.0 0.0 0.0 33.76 3.27 F
1035 1080 0.824759 AGTCATCGTACCTTCCTGCC 59.175 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1767 0.798776 GGTCGTCCAGTGCATTGAAG 59.201 55.000 11.31 1.73 0.00 3.02 R
2262 2307 2.095110 TGTTCAAGCCATGATCTTTGCG 60.095 45.455 0.00 0.00 38.03 4.85 R
2785 2849 0.035458 AAGCACTGCAGGACTGGTAC 59.965 55.000 19.93 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.507324 GTCTGAACCCTCTCGCGC 60.507 66.667 0.00 0.00 0.00 6.86
18 19 3.760035 TCTGAACCCTCTCGCGCC 61.760 66.667 0.00 0.00 0.00 6.53
96 99 2.494918 CCTTCAGGTACGAGCCCG 59.505 66.667 0.00 0.00 42.50 6.13
128 147 3.209812 GGCGCCTCCCCGATTTTC 61.210 66.667 22.15 0.00 0.00 2.29
139 158 2.403186 GATTTTCGGATGCGCGCA 59.597 55.556 38.27 38.27 0.00 6.09
157 176 2.356433 GCCTTCTAGATCCGCCGC 60.356 66.667 0.00 0.00 0.00 6.53
158 177 2.862223 GCCTTCTAGATCCGCCGCT 61.862 63.158 0.00 0.00 0.00 5.52
162 181 1.327690 TTCTAGATCCGCCGCTTGGT 61.328 55.000 0.00 0.00 34.16 3.67
230 249 2.185350 CGCTGCTGGATCGACCTT 59.815 61.111 0.00 0.00 39.86 3.50
234 253 2.125512 GCTGGATCGACCTTGCGT 60.126 61.111 0.00 0.00 39.86 5.24
245 264 0.180406 ACCTTGCGTGTTCTGGAAGT 59.820 50.000 0.00 0.00 33.45 3.01
249 268 0.750249 TGCGTGTTCTGGAAGTCTGA 59.250 50.000 0.00 0.00 33.76 3.27
259 278 3.132289 TCTGGAAGTCTGACGAGTTTGTT 59.868 43.478 1.52 0.00 33.03 2.83
355 381 2.356844 GGGTTCAGGGGTTCTGGTTATC 60.357 54.545 0.00 0.00 43.53 1.75
411 437 1.962807 CTTGGTGAAGGGCAATTGTCA 59.037 47.619 12.93 2.24 0.00 3.58
434 462 6.535150 TCAATTCTACTGCCGATTTGTTAGAG 59.465 38.462 0.00 0.00 0.00 2.43
435 463 5.654603 TTCTACTGCCGATTTGTTAGAGA 57.345 39.130 0.00 0.00 0.00 3.10
436 464 5.854010 TCTACTGCCGATTTGTTAGAGAT 57.146 39.130 0.00 0.00 0.00 2.75
477 505 7.700656 GGGTTTCACCGATTTAATTAGTTCATG 59.299 37.037 0.00 0.00 39.83 3.07
485 513 5.712217 TTTAATTAGTTCATGCTCCGACG 57.288 39.130 0.00 0.00 0.00 5.12
518 546 6.179906 ACCTGAATTGGACACCATATCTAG 57.820 41.667 0.00 0.00 31.53 2.43
519 547 5.667626 ACCTGAATTGGACACCATATCTAGT 59.332 40.000 0.00 0.00 31.53 2.57
520 548 6.844388 ACCTGAATTGGACACCATATCTAGTA 59.156 38.462 0.00 0.00 31.53 1.82
610 649 1.064296 CACGTGTAGCGCTCTAGGG 59.936 63.158 16.34 0.65 46.11 3.53
623 662 2.168728 GCTCTAGGGGTTGTCCTGTAAG 59.831 54.545 0.00 0.00 37.75 2.34
628 667 1.697982 GGGGTTGTCCTGTAAGTCTGT 59.302 52.381 0.00 0.00 35.33 3.41
629 668 2.901839 GGGGTTGTCCTGTAAGTCTGTA 59.098 50.000 0.00 0.00 35.33 2.74
630 669 3.325716 GGGGTTGTCCTGTAAGTCTGTAA 59.674 47.826 0.00 0.00 35.33 2.41
631 670 4.562963 GGGGTTGTCCTGTAAGTCTGTAAG 60.563 50.000 0.00 0.00 35.33 2.34
632 671 4.040095 GGGTTGTCCTGTAAGTCTGTAAGT 59.960 45.833 0.00 0.00 33.76 2.24
633 672 5.228665 GGTTGTCCTGTAAGTCTGTAAGTC 58.771 45.833 0.00 0.00 33.76 3.01
634 673 5.010820 GGTTGTCCTGTAAGTCTGTAAGTCT 59.989 44.000 0.00 0.00 32.39 3.24
635 674 5.707242 TGTCCTGTAAGTCTGTAAGTCTG 57.293 43.478 0.00 0.00 31.17 3.51
709 748 7.281549 ACTTTGTACTGAAGATTTTTGTACGGT 59.718 33.333 13.99 0.00 37.04 4.83
726 765 1.021968 GGTGTGTGTGTTTCCTGACC 58.978 55.000 0.00 0.00 0.00 4.02
762 802 3.055963 GTGGGTTCATTTGCCATGATCAA 60.056 43.478 0.00 0.00 0.00 2.57
835 878 2.561478 AAACGGCATCTGTAGTGGTT 57.439 45.000 0.00 0.00 0.00 3.67
836 879 1.808411 AACGGCATCTGTAGTGGTTG 58.192 50.000 0.00 0.00 0.00 3.77
844 887 2.703947 TCTGTAGTGGTTGGGGGTTTA 58.296 47.619 0.00 0.00 0.00 2.01
926 969 7.759489 AGTTCACTTAGCATTTTGTATTGGA 57.241 32.000 0.00 0.00 0.00 3.53
937 982 7.663905 AGCATTTTGTATTGGAGTGTGTTACTA 59.336 33.333 0.00 0.00 40.53 1.82
940 985 8.911918 TTTTGTATTGGAGTGTGTTACTATGT 57.088 30.769 0.00 0.00 40.53 2.29
947 992 9.959721 ATTGGAGTGTGTTACTATGTTATTCTT 57.040 29.630 0.00 0.00 40.53 2.52
975 1020 5.173131 CACTTCGTAACTTGGCATTTGTTTC 59.827 40.000 6.41 2.17 0.00 2.78
1035 1080 0.824759 AGTCATCGTACCTTCCTGCC 59.175 55.000 0.00 0.00 0.00 4.85
1105 1150 6.371825 AGAGTCAATTTCAATCCTTTACCGTC 59.628 38.462 0.00 0.00 0.00 4.79
1557 1602 6.229733 CAAACTCCACTTCTCTCTGAGAAAT 58.770 40.000 8.95 0.00 46.18 2.17
1587 1632 1.576421 CAAAGCTTCACTGACCGCC 59.424 57.895 0.00 0.00 0.00 6.13
1752 1797 2.307768 CTGGACGACCCAAGAGCTATA 58.692 52.381 0.34 0.00 46.07 1.31
1754 1799 2.891580 TGGACGACCCAAGAGCTATATC 59.108 50.000 0.34 0.00 43.29 1.63
1852 1897 2.092914 GCTAGCCTGAAGTATGTGGGTT 60.093 50.000 2.29 0.00 0.00 4.11
2262 2307 3.260884 TGGACAGTCTTTACATGAGGTCC 59.739 47.826 0.00 0.00 38.51 4.46
2265 2310 1.899814 AGTCTTTACATGAGGTCCGCA 59.100 47.619 0.00 0.00 0.00 5.69
2346 2393 8.589335 TTCATCTTGTAACAGTTCTGTTAGTC 57.411 34.615 20.98 13.25 35.25 2.59
2353 2400 8.008513 TGTAACAGTTCTGTTAGTCTCTTTCT 57.991 34.615 20.98 0.00 35.25 2.52
2396 2444 7.264221 TGTTTGACACTTTATTCTGCATGTTT 58.736 30.769 0.00 0.00 0.00 2.83
2399 2447 5.138125 ACACTTTATTCTGCATGTTTGGG 57.862 39.130 0.00 0.00 0.00 4.12
2409 2457 5.355596 TCTGCATGTTTGGGTTTTTAGTTG 58.644 37.500 0.00 0.00 0.00 3.16
2414 2462 7.337942 TGCATGTTTGGGTTTTTAGTTGAAAAT 59.662 29.630 0.00 0.00 36.89 1.82
2436 2484 8.978874 AAATATATACCATGCTCACAAACAGA 57.021 30.769 0.00 0.00 0.00 3.41
2447 2495 5.215160 GCTCACAAACAGAATAGTTGGTTG 58.785 41.667 1.76 1.76 46.19 3.77
2481 2529 1.876799 TGGCGTGTACCATGAAAACTG 59.123 47.619 0.00 0.00 33.75 3.16
2483 2531 1.199097 GCGTGTACCATGAAAACTGGG 59.801 52.381 0.00 0.00 38.14 4.45
2493 2541 3.094484 TGAAAACTGGGTGGTTCAAGT 57.906 42.857 0.00 0.00 0.00 3.16
2513 2561 4.785301 AGTATGAACCATGTTATGCTGCT 58.215 39.130 0.00 0.00 0.00 4.24
2598 2652 1.901591 ACACAATGCTGAGAGGTTGG 58.098 50.000 0.00 0.00 0.00 3.77
2609 2663 2.108075 TGAGAGGTTGGATGGCTTTTCA 59.892 45.455 0.00 0.00 0.00 2.69
2610 2664 2.489722 GAGAGGTTGGATGGCTTTTCAC 59.510 50.000 0.00 0.00 0.00 3.18
2624 2678 3.950794 TTCACTGGCATCGGCGGTC 62.951 63.158 7.21 0.00 44.45 4.79
2631 2685 1.207593 GCATCGGCGGTCAATATGC 59.792 57.895 7.21 10.29 36.51 3.14
2632 2686 1.230635 GCATCGGCGGTCAATATGCT 61.231 55.000 18.16 0.00 39.80 3.79
2635 2689 0.249447 TCGGCGGTCAATATGCTGAG 60.249 55.000 7.21 0.00 38.99 3.35
2638 2692 1.331756 GGCGGTCAATATGCTGAGTTG 59.668 52.381 0.00 0.00 0.00 3.16
2639 2693 2.279741 GCGGTCAATATGCTGAGTTGA 58.720 47.619 0.00 0.00 0.00 3.18
2640 2694 2.677836 GCGGTCAATATGCTGAGTTGAA 59.322 45.455 0.00 0.00 34.04 2.69
2641 2695 3.313526 GCGGTCAATATGCTGAGTTGAAT 59.686 43.478 0.00 0.00 34.04 2.57
2642 2696 4.553547 GCGGTCAATATGCTGAGTTGAATC 60.554 45.833 0.00 0.00 34.04 2.52
2643 2697 4.813161 CGGTCAATATGCTGAGTTGAATCT 59.187 41.667 0.00 0.00 34.04 2.40
2644 2698 5.985530 CGGTCAATATGCTGAGTTGAATCTA 59.014 40.000 0.00 0.00 34.04 1.98
2663 2717 0.105862 ATGCATGGATTGTCCTGGGG 60.106 55.000 0.00 0.00 37.46 4.96
2666 2720 1.896755 GCATGGATTGTCCTGGGGTTT 60.897 52.381 0.00 0.00 37.46 3.27
2668 2722 2.785357 TGGATTGTCCTGGGGTTTTT 57.215 45.000 0.00 0.00 37.46 1.94
2674 2728 4.463050 TTGTCCTGGGGTTTTTATCTGT 57.537 40.909 0.00 0.00 0.00 3.41
2676 2730 3.139397 TGTCCTGGGGTTTTTATCTGTGT 59.861 43.478 0.00 0.00 0.00 3.72
2685 2739 6.661805 GGGGTTTTTATCTGTGTTGAGGATAA 59.338 38.462 0.00 0.00 32.34 1.75
2688 2742 9.573133 GGTTTTTATCTGTGTTGAGGATAAATG 57.427 33.333 0.00 0.00 37.20 2.32
2691 2745 9.513906 TTTTATCTGTGTTGAGGATAAATGTCA 57.486 29.630 0.00 0.00 37.20 3.58
2709 2771 8.812147 AAATGTCAATGCTGCTATGAATATTG 57.188 30.769 9.01 5.21 0.00 1.90
2710 2772 7.754851 ATGTCAATGCTGCTATGAATATTGA 57.245 32.000 9.01 7.21 33.58 2.57
2713 2775 8.635328 TGTCAATGCTGCTATGAATATTGAAAT 58.365 29.630 9.85 0.00 36.61 2.17
2733 2795 8.596271 TGAAATCGATGTTTGTAGTTACAAGA 57.404 30.769 0.00 0.47 45.77 3.02
2753 2817 6.319658 ACAAGACTTGTGTGATTTCTTCATGT 59.680 34.615 19.96 0.00 43.48 3.21
2754 2818 6.551385 AGACTTGTGTGATTTCTTCATGTC 57.449 37.500 0.00 0.00 36.54 3.06
2755 2819 6.057533 AGACTTGTGTGATTTCTTCATGTCA 58.942 36.000 0.00 0.00 36.54 3.58
2756 2820 6.204301 AGACTTGTGTGATTTCTTCATGTCAG 59.796 38.462 0.00 0.00 36.54 3.51
2757 2821 4.754372 TGTGTGATTTCTTCATGTCAGC 57.246 40.909 0.00 0.00 36.54 4.26
2758 2822 4.392047 TGTGTGATTTCTTCATGTCAGCT 58.608 39.130 0.00 0.00 36.54 4.24
2759 2823 4.214758 TGTGTGATTTCTTCATGTCAGCTG 59.785 41.667 7.63 7.63 36.54 4.24
2760 2824 3.189910 TGTGATTTCTTCATGTCAGCTGC 59.810 43.478 9.47 4.92 36.54 5.25
2761 2825 3.439476 GTGATTTCTTCATGTCAGCTGCT 59.561 43.478 9.47 0.00 36.54 4.24
2762 2826 3.439129 TGATTTCTTCATGTCAGCTGCTG 59.561 43.478 23.31 23.31 0.00 4.41
2770 2834 3.243816 TCAGCTGCTGCCCTGTCA 61.244 61.111 24.38 2.66 40.80 3.58
2785 2849 1.128136 CTGTCAGCAGCGATTTCTGTG 59.872 52.381 0.00 0.00 35.77 3.66
2788 2852 2.092838 GTCAGCAGCGATTTCTGTGTAC 59.907 50.000 0.00 0.00 36.49 2.90
2791 2855 1.394917 GCAGCGATTTCTGTGTACCAG 59.605 52.381 5.31 5.31 42.97 4.00
2797 2861 2.543777 TTTCTGTGTACCAGTCCTGC 57.456 50.000 10.08 0.00 42.19 4.85
2818 2882 3.999663 GCAGTGCTTTCAGAGTTGTAGAT 59.000 43.478 8.18 0.00 0.00 1.98
2819 2883 5.171476 GCAGTGCTTTCAGAGTTGTAGATA 58.829 41.667 8.18 0.00 0.00 1.98
2820 2884 5.814705 GCAGTGCTTTCAGAGTTGTAGATAT 59.185 40.000 8.18 0.00 0.00 1.63
2825 2890 7.436673 GTGCTTTCAGAGTTGTAGATATACCAG 59.563 40.741 0.00 0.00 0.00 4.00
2847 2913 6.438425 CCAGGTTAAAGGGTACACTAGAGTTA 59.562 42.308 0.00 0.00 0.00 2.24
2873 2941 6.387041 AAAAAGTTGGTACACTAGAAAGGC 57.613 37.500 0.00 0.00 39.29 4.35
2875 2943 2.028385 AGTTGGTACACTAGAAAGGCCG 60.028 50.000 0.00 0.00 39.29 6.13
2905 2976 5.070685 AGCGGACCCATATAATTTTTCTCC 58.929 41.667 0.00 0.00 0.00 3.71
2908 2979 6.015434 GCGGACCCATATAATTTTTCTCCAAT 60.015 38.462 0.00 0.00 0.00 3.16
2910 2981 9.243105 CGGACCCATATAATTTTTCTCCAATAT 57.757 33.333 0.00 0.00 0.00 1.28
2945 3017 7.719633 TGAAAAACCTCTGAAAGTATAGCAAGT 59.280 33.333 0.00 0.00 33.76 3.16
2955 3027 7.265673 TGAAAGTATAGCAAGTCATCAGGTAC 58.734 38.462 0.00 0.00 0.00 3.34
2977 3049 1.274069 ACCCCTGAGACCATGTCATCT 60.274 52.381 0.00 0.00 34.60 2.90
2998 3070 2.086869 GCTTGCTTATTGTCTGGAGCA 58.913 47.619 0.00 0.00 42.84 4.26
3000 3072 2.113860 TGCTTATTGTCTGGAGCACC 57.886 50.000 0.00 0.00 39.97 5.01
3006 3079 0.325933 TTGTCTGGAGCACCATCAGG 59.674 55.000 2.38 0.00 45.87 3.86
3026 3099 3.457380 AGGAGTGTCATCTTATGCATGGT 59.543 43.478 10.16 0.00 0.00 3.55
3027 3100 3.562973 GGAGTGTCATCTTATGCATGGTG 59.437 47.826 10.16 0.00 0.00 4.17
3028 3101 3.548770 AGTGTCATCTTATGCATGGTGG 58.451 45.455 10.16 0.00 0.00 4.61
3048 3121 5.179929 GGTGGAGCCATTCTTTTCAAAATTG 59.820 40.000 0.00 0.00 37.17 2.32
3052 3125 4.211794 AGCCATTCTTTTCAAAATTGTGCG 59.788 37.500 0.00 0.00 0.00 5.34
3053 3126 4.456914 CCATTCTTTTCAAAATTGTGCGC 58.543 39.130 0.00 0.00 0.00 6.09
3055 3128 3.170791 TCTTTTCAAAATTGTGCGCCA 57.829 38.095 4.18 0.00 0.00 5.69
3056 3129 3.726607 TCTTTTCAAAATTGTGCGCCAT 58.273 36.364 4.18 0.00 0.00 4.40
3060 3133 2.831333 TCAAAATTGTGCGCCATGTTT 58.169 38.095 4.18 4.68 0.00 2.83
3061 3134 3.982475 TCAAAATTGTGCGCCATGTTTA 58.018 36.364 4.18 0.00 0.00 2.01
3110 3183 3.262660 TGGCACTCTTTCTGATCATGAGT 59.737 43.478 0.09 12.16 38.36 3.41
3111 3184 4.467438 TGGCACTCTTTCTGATCATGAGTA 59.533 41.667 15.52 0.00 36.39 2.59
3115 3188 6.815641 GCACTCTTTCTGATCATGAGTAAAGA 59.184 38.462 16.94 16.94 36.39 2.52
3116 3189 7.201513 GCACTCTTTCTGATCATGAGTAAAGAC 60.202 40.741 15.21 7.35 36.39 3.01
3117 3190 7.816513 CACTCTTTCTGATCATGAGTAAAGACA 59.183 37.037 15.21 4.11 36.39 3.41
3121 3194 8.539770 TTTCTGATCATGAGTAAAGACAGAAC 57.460 34.615 0.09 0.00 40.90 3.01
3128 3207 8.315391 TCATGAGTAAAGACAGAACTGATTTG 57.685 34.615 8.87 0.00 0.00 2.32
3138 3217 6.376581 AGACAGAACTGATTTGATCCCATTTC 59.623 38.462 8.87 0.00 0.00 2.17
3150 3229 9.650714 ATTTGATCCCATTTCATCTCTTATGAA 57.349 29.630 0.00 0.00 36.37 2.57
3156 3235 8.108999 TCCCATTTCATCTCTTATGAAGAACAA 58.891 33.333 1.18 0.00 38.98 2.83
3157 3236 8.910944 CCCATTTCATCTCTTATGAAGAACAAT 58.089 33.333 1.18 0.00 38.98 2.71
3164 3243 8.772705 CATCTCTTATGAAGAACAATAGGAAGC 58.227 37.037 0.00 0.00 37.02 3.86
3168 3247 7.984050 TCTTATGAAGAACAATAGGAAGCTCAG 59.016 37.037 0.00 0.00 33.83 3.35
3169 3248 5.489792 TGAAGAACAATAGGAAGCTCAGT 57.510 39.130 0.00 0.00 0.00 3.41
3172 3251 7.450074 TGAAGAACAATAGGAAGCTCAGTAAA 58.550 34.615 0.00 0.00 0.00 2.01
3184 3263 6.533367 GGAAGCTCAGTAAATGTAGTTCTCTG 59.467 42.308 0.00 0.00 0.00 3.35
3192 3305 9.823647 CAGTAAATGTAGTTCTCTGGATATGTT 57.176 33.333 0.00 0.00 0.00 2.71
3199 3312 7.555195 TGTAGTTCTCTGGATATGTTACTCGAA 59.445 37.037 0.00 0.00 0.00 3.71
3200 3313 7.589958 AGTTCTCTGGATATGTTACTCGAAT 57.410 36.000 0.00 0.00 0.00 3.34
3202 3315 9.132923 AGTTCTCTGGATATGTTACTCGAATAA 57.867 33.333 0.00 0.00 0.00 1.40
3224 3337 4.891992 TTCCTACAAGAACTTCTCCAGG 57.108 45.455 0.00 0.19 0.00 4.45
3267 3381 9.971744 GCAAAAGATGCGATTAATTATTTGTTT 57.028 25.926 0.00 0.00 46.87 2.83
3270 3384 8.560576 AAGATGCGATTAATTATTTGTTTCGG 57.439 30.769 0.00 0.00 0.00 4.30
3271 3385 7.703328 AGATGCGATTAATTATTTGTTTCGGT 58.297 30.769 0.00 0.00 0.00 4.69
3272 3386 7.643764 AGATGCGATTAATTATTTGTTTCGGTG 59.356 33.333 0.00 0.00 0.00 4.94
3273 3387 6.613233 TGCGATTAATTATTTGTTTCGGTGT 58.387 32.000 0.00 0.00 0.00 4.16
3275 3389 7.906010 TGCGATTAATTATTTGTTTCGGTGTAG 59.094 33.333 0.00 0.00 0.00 2.74
3283 3397 2.959516 TGTTTCGGTGTAGAGATGCTG 58.040 47.619 0.00 0.00 0.00 4.41
3284 3398 2.299013 TGTTTCGGTGTAGAGATGCTGT 59.701 45.455 0.00 0.00 0.00 4.40
3285 3399 2.924290 GTTTCGGTGTAGAGATGCTGTC 59.076 50.000 0.00 0.00 0.00 3.51
3286 3400 2.130272 TCGGTGTAGAGATGCTGTCT 57.870 50.000 0.00 0.00 40.81 3.41
3301 3415 5.268118 TGCTGTCTCTGGAATACATACTG 57.732 43.478 0.00 0.00 0.00 2.74
3302 3416 4.956075 TGCTGTCTCTGGAATACATACTGA 59.044 41.667 0.00 0.00 0.00 3.41
3309 3423 9.436957 GTCTCTGGAATACATACTGAAGAAAAA 57.563 33.333 0.00 0.00 0.00 1.94
3311 3425 8.792830 TCTGGAATACATACTGAAGAAAAAGG 57.207 34.615 0.00 0.00 0.00 3.11
3316 3430 5.948992 ACATACTGAAGAAAAAGGAGTGC 57.051 39.130 0.00 0.00 0.00 4.40
3332 3450 0.237498 GTGCGCCAGTTACCTTCAAC 59.763 55.000 4.18 0.00 0.00 3.18
3422 3542 7.232534 TGCTTCAAGGTGTAAACCTGAAAATAT 59.767 33.333 5.00 0.00 40.59 1.28
3423 3543 8.088365 GCTTCAAGGTGTAAACCTGAAAATATT 58.912 33.333 5.00 0.00 40.59 1.28
3424 3544 9.410556 CTTCAAGGTGTAAACCTGAAAATATTG 57.589 33.333 5.00 0.00 40.59 1.90
3580 3705 1.065345 TCTCCGAGTACCTGACCTCTG 60.065 57.143 0.00 0.00 0.00 3.35
3587 3713 2.185387 GTACCTGACCTCTGGCCTTTA 58.815 52.381 3.32 0.00 38.38 1.85
3588 3714 1.742308 ACCTGACCTCTGGCCTTTAA 58.258 50.000 3.32 0.00 38.38 1.52
3613 3739 3.876914 CACTAGCCAGTCAGTTTGTGAAA 59.123 43.478 0.00 0.00 36.74 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 3.889044 GGCGCGACGAGATGGAGA 61.889 66.667 12.10 0.00 0.00 3.71
109 112 3.995506 AAAATCGGGGAGGCGCCAG 62.996 63.158 31.54 14.14 38.95 4.85
110 113 3.987954 GAAAATCGGGGAGGCGCCA 62.988 63.158 31.54 6.82 38.95 5.69
111 114 3.209812 GAAAATCGGGGAGGCGCC 61.210 66.667 21.89 21.89 0.00 6.53
112 115 3.573491 CGAAAATCGGGGAGGCGC 61.573 66.667 0.00 0.00 36.00 6.53
139 158 2.862223 GCGGCGGATCTAGAAGGCT 61.862 63.158 9.78 0.00 0.00 4.58
143 162 1.327690 ACCAAGCGGCGGATCTAGAA 61.328 55.000 9.78 0.00 34.57 2.10
171 190 3.987404 GCAGATCCAGTTGCCGTT 58.013 55.556 0.00 0.00 34.28 4.44
230 249 0.750249 TCAGACTTCCAGAACACGCA 59.250 50.000 0.00 0.00 0.00 5.24
234 253 2.307768 ACTCGTCAGACTTCCAGAACA 58.692 47.619 0.00 0.00 0.00 3.18
245 264 2.787601 ACGCTAACAAACTCGTCAGA 57.212 45.000 0.00 0.00 0.00 3.27
249 268 3.750130 TCTCTCTACGCTAACAAACTCGT 59.250 43.478 0.00 0.00 38.75 4.18
259 278 4.783055 AGATCCAGTTTCTCTCTACGCTA 58.217 43.478 0.00 0.00 0.00 4.26
355 381 0.659957 GCTCCTGAAGCCTAATTGCG 59.340 55.000 0.00 0.00 45.92 4.85
411 437 6.640518 TCTCTAACAAATCGGCAGTAGAATT 58.359 36.000 0.00 0.00 0.00 2.17
485 513 3.678548 GTCCAATTCAGGTAGACGTGTTC 59.321 47.826 0.00 0.00 33.80 3.18
518 546 8.807581 GTGCTAAGTTGGCATAAATCAAAATAC 58.192 33.333 17.47 0.00 41.86 1.89
519 547 7.978975 GGTGCTAAGTTGGCATAAATCAAAATA 59.021 33.333 17.47 0.00 41.86 1.40
520 548 6.818142 GGTGCTAAGTTGGCATAAATCAAAAT 59.182 34.615 17.47 0.00 41.86 1.82
602 641 1.861982 TACAGGACAACCCCTAGAGC 58.138 55.000 0.00 0.00 34.07 4.09
610 649 5.010820 AGACTTACAGACTTACAGGACAACC 59.989 44.000 0.00 0.00 0.00 3.77
623 662 4.326548 GCACCGTTATTCAGACTTACAGAC 59.673 45.833 0.00 0.00 0.00 3.51
628 667 8.635328 TGATATAAGCACCGTTATTCAGACTTA 58.365 33.333 0.00 0.00 0.00 2.24
629 668 7.497595 TGATATAAGCACCGTTATTCAGACTT 58.502 34.615 0.00 0.00 0.00 3.01
630 669 7.050970 TGATATAAGCACCGTTATTCAGACT 57.949 36.000 0.00 0.00 0.00 3.24
631 670 7.201359 CGATGATATAAGCACCGTTATTCAGAC 60.201 40.741 0.00 0.00 0.00 3.51
632 671 6.806739 CGATGATATAAGCACCGTTATTCAGA 59.193 38.462 0.00 0.00 0.00 3.27
633 672 6.806739 TCGATGATATAAGCACCGTTATTCAG 59.193 38.462 0.00 0.00 0.00 3.02
634 673 6.584942 GTCGATGATATAAGCACCGTTATTCA 59.415 38.462 0.00 0.00 0.00 2.57
635 674 6.237227 CGTCGATGATATAAGCACCGTTATTC 60.237 42.308 0.00 0.00 0.00 1.75
669 708 7.959175 TCAGTACAAAGTGGATACTAGTGTTT 58.041 34.615 5.39 0.00 36.90 2.83
680 719 7.639113 ACAAAAATCTTCAGTACAAAGTGGA 57.361 32.000 0.00 0.00 0.00 4.02
709 748 1.280710 ACAGGTCAGGAAACACACACA 59.719 47.619 0.00 0.00 0.00 3.72
726 765 5.034852 TGAACCCACATATACCATGACAG 57.965 43.478 0.00 0.00 0.00 3.51
762 802 9.398538 CTAAGTTCTAACACTATCTGGAGTAGT 57.601 37.037 0.00 0.00 32.80 2.73
835 878 0.543174 GGGTGTGCATTAAACCCCCA 60.543 55.000 15.45 0.00 46.77 4.96
836 879 2.282827 GGGTGTGCATTAAACCCCC 58.717 57.895 15.45 0.00 46.77 5.40
940 985 8.284693 GCCAAGTTACGAAGTGTTAAAGAATAA 58.715 33.333 0.00 0.00 45.73 1.40
947 992 6.183360 ACAAATGCCAAGTTACGAAGTGTTAA 60.183 34.615 0.00 0.00 45.73 2.01
975 1020 1.535462 CCACCCTAAACTGCGAACAAG 59.465 52.381 0.00 0.00 0.00 3.16
1035 1080 6.963796 AGCTTTTTCAATTGACTCAGTAGTG 58.036 36.000 7.89 0.00 35.56 2.74
1722 1767 0.798776 GGTCGTCCAGTGCATTGAAG 59.201 55.000 11.31 1.73 0.00 3.02
2262 2307 2.095110 TGTTCAAGCCATGATCTTTGCG 60.095 45.455 0.00 0.00 38.03 4.85
2265 2310 5.564550 ACTAGTGTTCAAGCCATGATCTTT 58.435 37.500 0.00 0.00 38.03 2.52
2346 2393 7.226325 CAGGCAGGATTAAATGTCTAGAAAGAG 59.774 40.741 0.00 0.00 30.45 2.85
2353 2400 6.374333 GTCAAACAGGCAGGATTAAATGTCTA 59.626 38.462 0.00 0.00 28.25 2.59
2409 2457 9.669353 CTGTTTGTGAGCATGGTATATATTTTC 57.331 33.333 0.00 0.00 0.00 2.29
2414 2462 9.710900 CTATTCTGTTTGTGAGCATGGTATATA 57.289 33.333 0.00 0.00 0.00 0.86
2417 2465 6.418101 ACTATTCTGTTTGTGAGCATGGTAT 58.582 36.000 0.00 0.00 0.00 2.73
2422 2470 5.072741 ACCAACTATTCTGTTTGTGAGCAT 58.927 37.500 0.00 0.00 0.00 3.79
2451 2499 2.152830 GGTACACGCCAACCATACAAA 58.847 47.619 0.00 0.00 35.73 2.83
2452 2500 1.071857 TGGTACACGCCAACCATACAA 59.928 47.619 0.00 0.00 40.84 2.41
2472 2520 3.642141 ACTTGAACCACCCAGTTTTCAT 58.358 40.909 0.00 0.00 0.00 2.57
2493 2541 3.316029 GCAGCAGCATAACATGGTTCATA 59.684 43.478 0.00 0.00 39.29 2.15
2513 2561 8.772705 GGAAAATTATCACAAAAGAATGTTGCA 58.227 29.630 0.00 0.00 36.55 4.08
2567 2621 6.426025 TCTCAGCATTGTGTATGAAGCATATC 59.574 38.462 0.00 0.00 36.26 1.63
2575 2629 4.256110 CAACCTCTCAGCATTGTGTATGA 58.744 43.478 0.00 0.00 36.26 2.15
2576 2630 3.376234 CCAACCTCTCAGCATTGTGTATG 59.624 47.826 0.00 0.00 37.31 2.39
2580 2634 2.189594 TCCAACCTCTCAGCATTGTG 57.810 50.000 0.00 0.00 0.00 3.33
2598 2652 1.202222 CGATGCCAGTGAAAAGCCATC 60.202 52.381 0.00 0.00 0.00 3.51
2609 2663 1.966901 TATTGACCGCCGATGCCAGT 61.967 55.000 0.00 0.00 0.00 4.00
2610 2664 0.603707 ATATTGACCGCCGATGCCAG 60.604 55.000 0.00 0.00 0.00 4.85
2624 2678 7.198306 TGCATAGATTCAACTCAGCATATTG 57.802 36.000 0.00 0.00 0.00 1.90
2631 2685 6.262496 ACAATCCATGCATAGATTCAACTCAG 59.738 38.462 16.22 7.30 30.29 3.35
2632 2686 6.124340 ACAATCCATGCATAGATTCAACTCA 58.876 36.000 16.22 0.00 30.29 3.41
2635 2689 5.533903 AGGACAATCCATGCATAGATTCAAC 59.466 40.000 16.22 9.77 39.61 3.18
2638 2692 4.458295 CCAGGACAATCCATGCATAGATTC 59.542 45.833 16.22 7.64 39.61 2.52
2639 2693 4.404640 CCAGGACAATCCATGCATAGATT 58.595 43.478 13.75 13.75 39.61 2.40
2640 2694 3.245158 CCCAGGACAATCCATGCATAGAT 60.245 47.826 1.36 1.36 39.61 1.98
2641 2695 2.107031 CCCAGGACAATCCATGCATAGA 59.893 50.000 0.00 0.00 39.61 1.98
2642 2696 2.511659 CCCAGGACAATCCATGCATAG 58.488 52.381 0.00 0.00 39.61 2.23
2643 2697 1.145531 CCCCAGGACAATCCATGCATA 59.854 52.381 0.00 0.00 39.61 3.14
2644 2698 0.105862 CCCCAGGACAATCCATGCAT 60.106 55.000 0.00 0.00 39.61 3.96
2666 2720 9.513906 TTGACATTTATCCTCAACACAGATAAA 57.486 29.630 6.82 6.82 43.13 1.40
2668 2722 9.112725 CATTGACATTTATCCTCAACACAGATA 57.887 33.333 0.00 0.00 0.00 1.98
2674 2728 5.393352 GCAGCATTGACATTTATCCTCAACA 60.393 40.000 0.00 0.00 0.00 3.33
2676 2730 4.951715 AGCAGCATTGACATTTATCCTCAA 59.048 37.500 0.00 0.00 0.00 3.02
2685 2739 8.173542 TCAATATTCATAGCAGCATTGACATT 57.826 30.769 0.00 0.00 29.84 2.71
2688 2742 9.125906 GATTTCAATATTCATAGCAGCATTGAC 57.874 33.333 0.00 0.00 33.44 3.18
2689 2743 8.019094 CGATTTCAATATTCATAGCAGCATTGA 58.981 33.333 0.00 0.00 32.22 2.57
2690 2744 8.019094 TCGATTTCAATATTCATAGCAGCATTG 58.981 33.333 0.00 0.00 0.00 2.82
2691 2745 8.102800 TCGATTTCAATATTCATAGCAGCATT 57.897 30.769 0.00 0.00 0.00 3.56
2709 2771 8.709646 AGTCTTGTAACTACAAACATCGATTTC 58.290 33.333 0.00 0.00 44.67 2.17
2710 2772 8.603242 AGTCTTGTAACTACAAACATCGATTT 57.397 30.769 0.00 0.00 44.67 2.17
2713 2775 6.982141 ACAAGTCTTGTAACTACAAACATCGA 59.018 34.615 16.74 0.00 44.67 3.59
2733 2795 5.278169 GCTGACATGAAGAAATCACACAAGT 60.278 40.000 0.00 0.00 41.93 3.16
2753 2817 3.243816 TGACAGGGCAGCAGCTGA 61.244 61.111 27.39 0.00 41.70 4.26
2754 2818 2.746671 CTGACAGGGCAGCAGCTG 60.747 66.667 18.93 18.93 41.70 4.24
2770 2834 1.001974 TGGTACACAGAAATCGCTGCT 59.998 47.619 0.00 0.00 39.51 4.24
2785 2849 0.035458 AAGCACTGCAGGACTGGTAC 59.965 55.000 19.93 0.00 0.00 3.34
2788 2852 0.535780 TGAAAGCACTGCAGGACTGG 60.536 55.000 19.93 2.99 0.00 4.00
2791 2855 1.155042 CTCTGAAAGCACTGCAGGAC 58.845 55.000 19.93 9.52 0.00 3.85
2797 2861 7.436673 GGTATATCTACAACTCTGAAAGCACTG 59.563 40.741 0.00 0.00 0.00 3.66
2818 2882 7.651607 TCTAGTGTACCCTTTAACCTGGTATA 58.348 38.462 0.00 0.00 37.01 1.47
2819 2883 6.505754 TCTAGTGTACCCTTTAACCTGGTAT 58.494 40.000 0.00 0.00 37.01 2.73
2820 2884 5.902760 TCTAGTGTACCCTTTAACCTGGTA 58.097 41.667 0.00 0.00 33.55 3.25
2825 2890 7.232118 TGTAACTCTAGTGTACCCTTTAACC 57.768 40.000 0.00 0.00 0.00 2.85
2879 2947 7.148239 GGAGAAAAATTATATGGGTCCGCTATG 60.148 40.741 0.00 0.00 0.00 2.23
2880 2948 6.884836 GGAGAAAAATTATATGGGTCCGCTAT 59.115 38.462 0.00 0.00 0.00 2.97
2881 2949 6.183361 TGGAGAAAAATTATATGGGTCCGCTA 60.183 38.462 0.00 0.00 0.00 4.26
2883 2951 4.825085 TGGAGAAAAATTATATGGGTCCGC 59.175 41.667 0.00 0.00 0.00 5.54
2884 2952 6.952773 TTGGAGAAAAATTATATGGGTCCG 57.047 37.500 0.00 0.00 0.00 4.79
2895 2966 8.869109 TCAGAACCACAATATTGGAGAAAAATT 58.131 29.630 19.37 2.76 39.24 1.82
2931 3003 7.265673 TGTACCTGATGACTTGCTATACTTTC 58.734 38.462 0.00 0.00 0.00 2.62
2933 3005 6.791867 TGTACCTGATGACTTGCTATACTT 57.208 37.500 0.00 0.00 0.00 2.24
2955 3027 0.692476 TGACATGGTCTCAGGGGTTG 59.308 55.000 0.00 0.00 33.15 3.77
2967 3039 4.097437 ACAATAAGCAAGCAGATGACATGG 59.903 41.667 0.00 0.00 0.00 3.66
2977 3049 2.086869 GCTCCAGACAATAAGCAAGCA 58.913 47.619 0.00 0.00 34.86 3.91
2998 3070 4.444022 GCATAAGATGACACTCCTGATGGT 60.444 45.833 0.00 0.00 34.23 3.55
3000 3072 4.700700 TGCATAAGATGACACTCCTGATG 58.299 43.478 0.00 0.00 0.00 3.07
3006 3079 3.562973 CCACCATGCATAAGATGACACTC 59.437 47.826 0.00 0.00 0.00 3.51
3026 3099 5.759273 CACAATTTTGAAAAGAATGGCTCCA 59.241 36.000 0.00 0.00 0.00 3.86
3027 3100 5.334337 GCACAATTTTGAAAAGAATGGCTCC 60.334 40.000 0.00 0.00 0.00 4.70
3028 3101 5.613142 CGCACAATTTTGAAAAGAATGGCTC 60.613 40.000 0.00 0.00 0.00 4.70
3048 3121 1.675552 ACCCTATAAACATGGCGCAC 58.324 50.000 10.83 0.00 0.00 5.34
3052 3125 4.067972 TCGAGAACCCTATAAACATGGC 57.932 45.455 0.00 0.00 0.00 4.40
3053 3126 5.701290 GGATTCGAGAACCCTATAAACATGG 59.299 44.000 0.00 0.00 0.00 3.66
3055 3128 5.539048 CGGATTCGAGAACCCTATAAACAT 58.461 41.667 0.00 0.00 39.00 2.71
3056 3129 4.738541 GCGGATTCGAGAACCCTATAAACA 60.739 45.833 0.00 0.00 39.00 2.83
3060 3133 1.891150 GGCGGATTCGAGAACCCTATA 59.109 52.381 0.00 0.00 39.00 1.31
3061 3134 0.680061 GGCGGATTCGAGAACCCTAT 59.320 55.000 0.00 0.00 39.00 2.57
3095 3168 8.655092 GTTCTGTCTTTACTCATGATCAGAAAG 58.345 37.037 0.09 4.39 40.58 2.62
3104 3177 8.315391 TCAAATCAGTTCTGTCTTTACTCATG 57.685 34.615 0.00 0.00 0.00 3.07
3110 3183 6.778821 TGGGATCAAATCAGTTCTGTCTTTA 58.221 36.000 0.00 0.00 0.00 1.85
3111 3184 5.634118 TGGGATCAAATCAGTTCTGTCTTT 58.366 37.500 0.00 0.00 0.00 2.52
3115 3188 6.012113 TGAAATGGGATCAAATCAGTTCTGT 58.988 36.000 14.14 0.00 36.72 3.41
3116 3189 6.519679 TGAAATGGGATCAAATCAGTTCTG 57.480 37.500 14.14 0.00 36.72 3.02
3117 3190 7.124052 AGATGAAATGGGATCAAATCAGTTCT 58.876 34.615 14.14 3.30 36.72 3.01
3121 3194 7.584122 AAGAGATGAAATGGGATCAAATCAG 57.416 36.000 0.00 0.00 0.00 2.90
3128 3207 8.782144 GTTCTTCATAAGAGATGAAATGGGATC 58.218 37.037 1.96 0.00 39.03 3.36
3138 3217 8.772705 GCTTCCTATTGTTCTTCATAAGAGATG 58.227 37.037 0.00 0.00 39.03 2.90
3150 3229 7.398024 ACATTTACTGAGCTTCCTATTGTTCT 58.602 34.615 0.00 0.00 0.00 3.01
3156 3235 8.312669 AGAACTACATTTACTGAGCTTCCTAT 57.687 34.615 0.00 0.00 0.00 2.57
3157 3236 7.616150 AGAGAACTACATTTACTGAGCTTCCTA 59.384 37.037 0.00 0.00 0.00 2.94
3158 3237 6.439058 AGAGAACTACATTTACTGAGCTTCCT 59.561 38.462 0.00 0.00 0.00 3.36
3164 3243 9.689976 CATATCCAGAGAACTACATTTACTGAG 57.310 37.037 0.00 0.00 0.00 3.35
3172 3251 7.720074 TCGAGTAACATATCCAGAGAACTACAT 59.280 37.037 0.00 0.00 0.00 2.29
3192 3305 9.798994 GAAGTTCTTGTAGGAATTATTCGAGTA 57.201 33.333 0.00 0.00 0.00 2.59
3196 3309 7.764443 TGGAGAAGTTCTTGTAGGAATTATTCG 59.236 37.037 6.88 0.00 0.00 3.34
3199 3312 7.569240 CCTGGAGAAGTTCTTGTAGGAATTAT 58.431 38.462 18.84 0.00 0.00 1.28
3200 3313 6.576442 GCCTGGAGAAGTTCTTGTAGGAATTA 60.576 42.308 24.08 0.16 0.00 1.40
3202 3315 4.323868 GCCTGGAGAAGTTCTTGTAGGAAT 60.324 45.833 24.08 0.00 0.00 3.01
3224 3337 6.158598 TCTTTTGCAGAACTTGATTTATGGC 58.841 36.000 0.00 0.00 0.00 4.40
3251 3365 9.632969 CTCTACACCGAAACAAATAATTAATCG 57.367 33.333 0.00 0.00 0.00 3.34
3255 3369 8.609176 GCATCTCTACACCGAAACAAATAATTA 58.391 33.333 0.00 0.00 0.00 1.40
3257 3371 6.823689 AGCATCTCTACACCGAAACAAATAAT 59.176 34.615 0.00 0.00 0.00 1.28
3258 3372 6.092122 CAGCATCTCTACACCGAAACAAATAA 59.908 38.462 0.00 0.00 0.00 1.40
3260 3374 4.393062 CAGCATCTCTACACCGAAACAAAT 59.607 41.667 0.00 0.00 0.00 2.32
3264 3378 2.924290 GACAGCATCTCTACACCGAAAC 59.076 50.000 0.00 0.00 0.00 2.78
3265 3379 2.826128 AGACAGCATCTCTACACCGAAA 59.174 45.455 0.00 0.00 28.16 3.46
3267 3381 2.130272 AGACAGCATCTCTACACCGA 57.870 50.000 0.00 0.00 28.16 4.69
3278 3392 5.600069 TCAGTATGTATTCCAGAGACAGCAT 59.400 40.000 0.00 0.00 37.40 3.79
3279 3393 4.956075 TCAGTATGTATTCCAGAGACAGCA 59.044 41.667 0.00 0.00 37.40 4.41
3280 3394 5.521906 TCAGTATGTATTCCAGAGACAGC 57.478 43.478 0.00 0.00 37.40 4.40
3283 3397 9.436957 TTTTTCTTCAGTATGTATTCCAGAGAC 57.563 33.333 0.00 0.00 37.40 3.36
3284 3398 9.658799 CTTTTTCTTCAGTATGTATTCCAGAGA 57.341 33.333 0.00 0.00 37.40 3.10
3285 3399 8.887717 CCTTTTTCTTCAGTATGTATTCCAGAG 58.112 37.037 0.00 0.00 37.40 3.35
3286 3400 8.602424 TCCTTTTTCTTCAGTATGTATTCCAGA 58.398 33.333 0.00 0.00 37.40 3.86
3287 3401 8.792830 TCCTTTTTCTTCAGTATGTATTCCAG 57.207 34.615 0.00 0.00 37.40 3.86
3288 3402 8.383175 ACTCCTTTTTCTTCAGTATGTATTCCA 58.617 33.333 0.00 0.00 37.40 3.53
3289 3403 8.669243 CACTCCTTTTTCTTCAGTATGTATTCC 58.331 37.037 0.00 0.00 37.40 3.01
3290 3404 8.178313 GCACTCCTTTTTCTTCAGTATGTATTC 58.822 37.037 0.00 0.00 37.40 1.75
3291 3405 7.148407 CGCACTCCTTTTTCTTCAGTATGTATT 60.148 37.037 0.00 0.00 37.40 1.89
3292 3406 6.313905 CGCACTCCTTTTTCTTCAGTATGTAT 59.686 38.462 0.00 0.00 37.40 2.29
3293 3407 5.637810 CGCACTCCTTTTTCTTCAGTATGTA 59.362 40.000 0.00 0.00 37.40 2.29
3294 3408 4.452455 CGCACTCCTTTTTCTTCAGTATGT 59.548 41.667 0.00 0.00 37.40 2.29
3295 3409 4.670221 GCGCACTCCTTTTTCTTCAGTATG 60.670 45.833 0.30 0.00 37.54 2.39
3301 3415 0.951558 TGGCGCACTCCTTTTTCTTC 59.048 50.000 10.83 0.00 0.00 2.87
3302 3416 0.954452 CTGGCGCACTCCTTTTTCTT 59.046 50.000 10.83 0.00 0.00 2.52
3309 3423 2.663196 GGTAACTGGCGCACTCCT 59.337 61.111 10.83 0.00 0.00 3.69
3332 3450 2.132762 GCAATACGGAAGGTGATACGG 58.867 52.381 0.00 0.00 0.00 4.02
3580 3705 3.154710 ACTGGCTAGTGTTTTAAAGGCC 58.845 45.455 0.13 0.00 35.34 5.19
3587 3713 4.096382 CACAAACTGACTGGCTAGTGTTTT 59.904 41.667 7.76 0.89 37.25 2.43
3588 3714 3.627577 CACAAACTGACTGGCTAGTGTTT 59.372 43.478 7.76 10.09 37.25 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.