Multiple sequence alignment - TraesCS4B01G355200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G355200 chr4B 100.000 8731 0 0 1 8731 646214545 646223275 0.000000e+00 16124.0
1 TraesCS4B01G355200 chr4B 99.117 8157 62 6 1 8156 351624156 351616009 0.000000e+00 14656.0
2 TraesCS4B01G355200 chr4B 94.872 39 1 1 8264 8302 111824275 111824238 9.470000e-05 60.2
3 TraesCS4B01G355200 chr4B 91.111 45 3 1 8261 8305 515157662 515157705 9.470000e-05 60.2
4 TraesCS4B01G355200 chr1B 99.213 8255 56 7 1 8253 330220362 330228609 0.000000e+00 14875.0
5 TraesCS4B01G355200 chr2A 99.127 8252 70 2 1 8252 692221390 692229639 0.000000e+00 14838.0
6 TraesCS4B01G355200 chr2A 99.101 2448 19 3 1 2448 690327531 690325087 0.000000e+00 4396.0
7 TraesCS4B01G355200 chr2A 99.159 2258 19 0 1 2258 692218510 692220767 0.000000e+00 4065.0
8 TraesCS4B01G355200 chr2A 98.982 2259 21 2 1 2258 692215631 692217888 0.000000e+00 4043.0
9 TraesCS4B01G355200 chr2A 99.382 1456 9 0 3845 5300 690323895 690322440 0.000000e+00 2639.0
10 TraesCS4B01G355200 chr2A 97.966 1180 22 2 2641 3820 690325069 690323892 0.000000e+00 2045.0
11 TraesCS4B01G355200 chr7A 99.168 5888 38 3 1 5878 31959237 31953351 0.000000e+00 10591.0
12 TraesCS4B01G355200 chr7A 99.111 5175 37 2 3086 8252 31927649 31922476 0.000000e+00 9293.0
13 TraesCS4B01G355200 chr7A 98.776 4737 52 4 2522 7258 220513911 220509181 0.000000e+00 8421.0
14 TraesCS4B01G355200 chr7A 99.337 2563 17 0 5690 8252 31953287 31950725 0.000000e+00 4639.0
15 TraesCS4B01G355200 chr7A 98.874 2398 26 1 1 2398 220516310 220513914 0.000000e+00 4277.0
16 TraesCS4B01G355200 chrUn 99.237 3146 24 0 5107 8252 317741015 317737870 0.000000e+00 5677.0
17 TraesCS4B01G355200 chrUn 98.722 2583 31 1 5318 7900 79771503 79774083 0.000000e+00 4586.0
18 TraesCS4B01G355200 chrUn 98.759 2579 26 3 1 2576 312349722 312352297 0.000000e+00 4580.0
19 TraesCS4B01G355200 chrUn 98.763 2426 27 3 2571 4995 341068087 341070510 0.000000e+00 4311.0
20 TraesCS4B01G355200 chrUn 99.344 1371 9 0 4477 5847 406655328 406653958 0.000000e+00 2483.0
21 TraesCS4B01G355200 chrUn 98.141 1291 21 3 2571 3860 415599747 415598459 0.000000e+00 2248.0
22 TraesCS4B01G355200 chrUn 98.077 156 3 0 8097 8252 329075562 329075717 1.120000e-68 272.0
23 TraesCS4B01G355200 chr5B 99.176 2548 15 2 5706 8253 600926700 600929241 0.000000e+00 4584.0
24 TraesCS4B01G355200 chr4A 92.463 2030 107 20 1251 3270 648992958 648990965 0.000000e+00 2859.0
25 TraesCS4B01G355200 chr4A 100.000 34 0 0 8264 8297 531280800 531280767 7.320000e-06 63.9
26 TraesCS4B01G355200 chr3A 98.108 1480 26 1 6621 8100 738466158 738464681 0.000000e+00 2577.0
27 TraesCS4B01G355200 chr3A 98.077 156 3 0 8097 8252 738570250 738570095 1.120000e-68 272.0
28 TraesCS4B01G355200 chr3A 97.436 156 4 0 8097 8252 738548585 738548430 5.200000e-67 267.0
29 TraesCS4B01G355200 chr4D 93.995 1482 78 6 3694 5169 86316650 86315174 0.000000e+00 2233.0
30 TraesCS4B01G355200 chr4D 95.057 263 9 3 8469 8731 502108821 502109079 2.270000e-110 411.0
31 TraesCS4B01G355200 chr5A 85.305 279 18 10 8460 8731 685011951 685012213 5.200000e-67 267.0
32 TraesCS4B01G355200 chr5A 100.000 29 0 0 8446 8474 685011907 685011935 4.000000e-03 54.7
33 TraesCS4B01G355200 chr6D 100.000 34 0 0 8264 8297 377973916 377973883 7.320000e-06 63.9
34 TraesCS4B01G355200 chr7D 93.023 43 1 2 8260 8301 380925045 380925004 2.630000e-05 62.1
35 TraesCS4B01G355200 chr5D 95.000 40 1 1 8265 8304 209683841 209683803 2.630000e-05 62.1
36 TraesCS4B01G355200 chr6B 91.111 45 2 2 8264 8307 641399334 641399291 9.470000e-05 60.2
37 TraesCS4B01G355200 chr3B 100.000 32 0 0 8264 8295 5544650 5544619 9.470000e-05 60.2
38 TraesCS4B01G355200 chr1A 100.000 32 0 0 8264 8295 453066040 453066071 9.470000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G355200 chr4B 646214545 646223275 8730 False 16124.000000 16124 100.000000 1 8731 1 chr4B.!!$F2 8730
1 TraesCS4B01G355200 chr4B 351616009 351624156 8147 True 14656.000000 14656 99.117000 1 8156 1 chr4B.!!$R2 8155
2 TraesCS4B01G355200 chr1B 330220362 330228609 8247 False 14875.000000 14875 99.213000 1 8253 1 chr1B.!!$F1 8252
3 TraesCS4B01G355200 chr2A 692215631 692229639 14008 False 7648.666667 14838 99.089333 1 8252 3 chr2A.!!$F1 8251
4 TraesCS4B01G355200 chr2A 690322440 690327531 5091 True 3026.666667 4396 98.816333 1 5300 3 chr2A.!!$R1 5299
5 TraesCS4B01G355200 chr7A 31922476 31927649 5173 True 9293.000000 9293 99.111000 3086 8252 1 chr7A.!!$R1 5166
6 TraesCS4B01G355200 chr7A 31950725 31959237 8512 True 7615.000000 10591 99.252500 1 8252 2 chr7A.!!$R2 8251
7 TraesCS4B01G355200 chr7A 220509181 220516310 7129 True 6349.000000 8421 98.825000 1 7258 2 chr7A.!!$R3 7257
8 TraesCS4B01G355200 chrUn 317737870 317741015 3145 True 5677.000000 5677 99.237000 5107 8252 1 chrUn.!!$R1 3145
9 TraesCS4B01G355200 chrUn 79771503 79774083 2580 False 4586.000000 4586 98.722000 5318 7900 1 chrUn.!!$F1 2582
10 TraesCS4B01G355200 chrUn 312349722 312352297 2575 False 4580.000000 4580 98.759000 1 2576 1 chrUn.!!$F2 2575
11 TraesCS4B01G355200 chrUn 341068087 341070510 2423 False 4311.000000 4311 98.763000 2571 4995 1 chrUn.!!$F4 2424
12 TraesCS4B01G355200 chrUn 406653958 406655328 1370 True 2483.000000 2483 99.344000 4477 5847 1 chrUn.!!$R2 1370
13 TraesCS4B01G355200 chrUn 415598459 415599747 1288 True 2248.000000 2248 98.141000 2571 3860 1 chrUn.!!$R3 1289
14 TraesCS4B01G355200 chr5B 600926700 600929241 2541 False 4584.000000 4584 99.176000 5706 8253 1 chr5B.!!$F1 2547
15 TraesCS4B01G355200 chr4A 648990965 648992958 1993 True 2859.000000 2859 92.463000 1251 3270 1 chr4A.!!$R2 2019
16 TraesCS4B01G355200 chr3A 738464681 738466158 1477 True 2577.000000 2577 98.108000 6621 8100 1 chr3A.!!$R1 1479
17 TraesCS4B01G355200 chr4D 86315174 86316650 1476 True 2233.000000 2233 93.995000 3694 5169 1 chr4D.!!$R1 1475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 3.059325 GTGGCTAATTGCAATCTCTAGCG 60.059 47.826 24.80 8.16 45.15 4.26 F
129 3009 3.912496 TGCCTCACTATGCTATGTTGT 57.088 42.857 0.00 0.00 0.00 3.32 F
1824 7592 1.078848 GTGGTACAGGAGCAGCAGG 60.079 63.158 0.00 0.00 41.80 4.85 F
3239 9018 2.019249 CATCAAGGCCATCATGTCGTT 58.981 47.619 5.01 0.00 0.00 3.85 F
3356 9135 2.224646 ACTGGAGGAAAAGAGGTTCTGC 60.225 50.000 0.00 0.00 0.00 4.26 F
3780 9560 4.825422 CTCCTTGAAAGCTACACAGATCA 58.175 43.478 0.00 0.00 0.00 2.92 F
5572 11402 1.377987 GGAACGCCTGTGCCCAATA 60.378 57.895 0.00 0.00 37.93 1.90 F
5908 11991 4.223032 AGGTTTCCATGATGAGTTCGTAGT 59.777 41.667 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 7592 1.795286 GCTACTTGATAGCGATGGTGC 59.205 52.381 0.00 0.00 46.80 5.01 R
1835 7603 3.539604 GTGATTGCTGGAGCTACTTGAT 58.460 45.455 0.00 0.00 42.66 2.57 R
3553 9332 1.238439 CGTCAAACCTGGAAGTGCAT 58.762 50.000 0.00 0.00 0.00 3.96 R
5251 11081 5.450453 TGGTTATTGTTTCTCCTGGAACAA 58.550 37.500 13.25 13.25 38.70 2.83 R
5272 11102 5.067153 TGTTGGTTACTGTTTCTGTTCATGG 59.933 40.000 0.00 0.00 0.00 3.66 R
5878 11961 0.706433 ATCATGGAAACCTGCCCAGT 59.294 50.000 0.00 0.00 35.67 4.00 R
6981 13066 7.041721 CCGCAACCATATAGATCTAATAGCAA 58.958 38.462 6.52 0.00 0.00 3.91 R
7852 13944 2.553247 GCAGCAAGGGAGGACTAAAGTT 60.553 50.000 0.00 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.059325 GTGGCTAATTGCAATCTCTAGCG 60.059 47.826 24.80 8.16 45.15 4.26
129 3009 3.912496 TGCCTCACTATGCTATGTTGT 57.088 42.857 0.00 0.00 0.00 3.32
296 3176 8.657387 AGTCCTATGCATACAAGATACAGTAT 57.343 34.615 1.16 0.00 0.00 2.12
1281 4161 9.862371 TTTAAGTGATGTTACTTTGCTTGAAAA 57.138 25.926 0.00 0.00 41.01 2.29
1494 4378 7.236019 TCAACTTAGGAAGGAACATACAACCTA 59.764 37.037 0.00 0.00 33.34 3.08
1824 7592 1.078848 GTGGTACAGGAGCAGCAGG 60.079 63.158 0.00 0.00 41.80 4.85
1835 7603 2.187685 CAGCAGGCACCATCGCTA 59.812 61.111 0.00 0.00 32.29 4.26
2117 7888 8.612619 GTGTGAGTCTGAGAAAAATACTTTTGA 58.387 33.333 0.00 0.00 34.83 2.69
2934 8712 7.339976 TCAGAATGCATGATGATTGGTTTCTTA 59.660 33.333 0.00 0.00 34.76 2.10
3042 8820 6.377146 ACATTTTGGTTGTGTTTGTCTAGAGT 59.623 34.615 0.00 0.00 0.00 3.24
3239 9018 2.019249 CATCAAGGCCATCATGTCGTT 58.981 47.619 5.01 0.00 0.00 3.85
3356 9135 2.224646 ACTGGAGGAAAAGAGGTTCTGC 60.225 50.000 0.00 0.00 0.00 4.26
3759 9539 5.073554 TGGACATATGGATTGATTGGTAGCT 59.926 40.000 7.80 0.00 0.00 3.32
3780 9560 4.825422 CTCCTTGAAAGCTACACAGATCA 58.175 43.478 0.00 0.00 0.00 2.92
4911 10739 6.693315 ACATGCTAATATTGTACACCAACC 57.307 37.500 0.00 0.00 35.44 3.77
5251 11081 9.376075 GATATAGCACTATCATTTAGCACACAT 57.624 33.333 0.00 0.00 0.00 3.21
5272 11102 6.863126 CACATTGTTCCAGGAGAAACAATAAC 59.137 38.462 15.03 0.00 35.89 1.89
5572 11402 1.377987 GGAACGCCTGTGCCCAATA 60.378 57.895 0.00 0.00 37.93 1.90
5908 11991 4.223032 AGGTTTCCATGATGAGTTCGTAGT 59.777 41.667 0.00 0.00 0.00 2.73
7718 13810 1.270550 CGCCTTGAAGCAACCAGAAAT 59.729 47.619 0.00 0.00 0.00 2.17
7852 13944 8.867097 GGACTACTCCCAACAAGATATGTATAA 58.133 37.037 0.00 0.00 42.99 0.98
8253 14345 2.479049 GGCGCAACGAGTCATCTAGTTA 60.479 50.000 10.83 0.00 37.40 2.24
8254 14346 3.372954 GCGCAACGAGTCATCTAGTTAT 58.627 45.455 0.30 0.00 37.40 1.89
8255 14347 3.797256 GCGCAACGAGTCATCTAGTTATT 59.203 43.478 0.30 0.00 37.40 1.40
8256 14348 4.974275 GCGCAACGAGTCATCTAGTTATTA 59.026 41.667 0.30 0.00 37.40 0.98
8257 14349 5.115773 GCGCAACGAGTCATCTAGTTATTAG 59.884 44.000 0.30 0.00 37.40 1.73
8258 14350 5.625721 CGCAACGAGTCATCTAGTTATTAGG 59.374 44.000 0.00 0.00 37.40 2.69
8259 14351 6.505272 GCAACGAGTCATCTAGTTATTAGGT 58.495 40.000 0.00 0.00 37.40 3.08
8260 14352 7.519488 CGCAACGAGTCATCTAGTTATTAGGTA 60.519 40.741 0.00 0.00 37.40 3.08
8261 14353 8.133627 GCAACGAGTCATCTAGTTATTAGGTAA 58.866 37.037 0.00 0.00 37.40 2.85
8264 14356 9.624373 ACGAGTCATCTAGTTATTAGGTAAAGA 57.376 33.333 0.00 0.00 0.00 2.52
8275 14367 9.765795 AGTTATTAGGTAAAGATATGCACACTC 57.234 33.333 0.00 0.00 0.00 3.51
8276 14368 8.700644 GTTATTAGGTAAAGATATGCACACTCG 58.299 37.037 0.00 0.00 0.00 4.18
8277 14369 4.737855 AGGTAAAGATATGCACACTCGT 57.262 40.909 0.00 0.00 0.00 4.18
8278 14370 4.433615 AGGTAAAGATATGCACACTCGTG 58.566 43.478 0.00 0.00 46.56 4.35
8316 14408 3.963665 TGTCTTCAAACATTTTCAGCGG 58.036 40.909 0.00 0.00 0.00 5.52
8317 14409 3.380004 TGTCTTCAAACATTTTCAGCGGT 59.620 39.130 0.00 0.00 0.00 5.68
8318 14410 4.142271 TGTCTTCAAACATTTTCAGCGGTT 60.142 37.500 0.00 0.00 0.00 4.44
8319 14411 4.803613 GTCTTCAAACATTTTCAGCGGTTT 59.196 37.500 0.00 0.00 34.03 3.27
8320 14412 5.290885 GTCTTCAAACATTTTCAGCGGTTTT 59.709 36.000 0.00 0.00 31.57 2.43
8321 14413 5.290643 TCTTCAAACATTTTCAGCGGTTTTG 59.709 36.000 0.47 0.47 31.57 2.44
8322 14414 4.748892 TCAAACATTTTCAGCGGTTTTGA 58.251 34.783 4.71 4.71 31.57 2.69
8323 14415 5.171476 TCAAACATTTTCAGCGGTTTTGAA 58.829 33.333 6.04 0.00 31.57 2.69
8324 14416 5.814705 TCAAACATTTTCAGCGGTTTTGAAT 59.185 32.000 6.04 0.00 34.76 2.57
8325 14417 6.980978 TCAAACATTTTCAGCGGTTTTGAATA 59.019 30.769 6.04 0.00 34.76 1.75
8326 14418 7.655328 TCAAACATTTTCAGCGGTTTTGAATAT 59.345 29.630 6.04 0.00 34.76 1.28
8327 14419 6.949578 ACATTTTCAGCGGTTTTGAATATG 57.050 33.333 13.25 13.25 43.50 1.78
8328 14420 6.454795 ACATTTTCAGCGGTTTTGAATATGT 58.545 32.000 14.17 14.17 44.69 2.29
8329 14421 6.928492 ACATTTTCAGCGGTTTTGAATATGTT 59.072 30.769 14.17 4.31 45.94 2.71
8330 14422 7.440856 ACATTTTCAGCGGTTTTGAATATGTTT 59.559 29.630 14.17 0.00 45.94 2.83
8331 14423 7.778470 TTTTCAGCGGTTTTGAATATGTTTT 57.222 28.000 0.00 0.00 34.76 2.43
8332 14424 6.761731 TTCAGCGGTTTTGAATATGTTTTG 57.238 33.333 0.00 0.00 30.03 2.44
8333 14425 5.837437 TCAGCGGTTTTGAATATGTTTTGT 58.163 33.333 0.00 0.00 0.00 2.83
8334 14426 6.971602 TCAGCGGTTTTGAATATGTTTTGTA 58.028 32.000 0.00 0.00 0.00 2.41
8335 14427 6.858993 TCAGCGGTTTTGAATATGTTTTGTAC 59.141 34.615 0.00 0.00 0.00 2.90
8336 14428 6.088883 CAGCGGTTTTGAATATGTTTTGTACC 59.911 38.462 0.00 0.00 0.00 3.34
8337 14429 6.015772 AGCGGTTTTGAATATGTTTTGTACCT 60.016 34.615 0.00 0.00 0.00 3.08
8338 14430 6.643360 GCGGTTTTGAATATGTTTTGTACCTT 59.357 34.615 0.00 0.00 0.00 3.50
8339 14431 7.148869 GCGGTTTTGAATATGTTTTGTACCTTC 60.149 37.037 0.00 0.00 0.00 3.46
8340 14432 7.863375 CGGTTTTGAATATGTTTTGTACCTTCA 59.137 33.333 0.00 0.00 0.00 3.02
8341 14433 9.535878 GGTTTTGAATATGTTTTGTACCTTCAA 57.464 29.630 0.00 0.00 31.97 2.69
8346 14438 9.567776 TGAATATGTTTTGTACCTTCAAAGAGA 57.432 29.630 0.00 0.00 38.32 3.10
8350 14442 7.873719 TGTTTTGTACCTTCAAAGAGATTGA 57.126 32.000 0.00 0.00 46.22 2.57
8363 14455 7.056635 TCAAAGAGATTGATCTTATTGACCCC 58.943 38.462 13.70 0.00 43.08 4.95
8364 14456 6.581388 AAGAGATTGATCTTATTGACCCCA 57.419 37.500 0.00 0.00 37.76 4.96
8365 14457 5.934781 AGAGATTGATCTTATTGACCCCAC 58.065 41.667 0.00 0.00 37.25 4.61
8366 14458 5.053978 AGATTGATCTTATTGACCCCACC 57.946 43.478 0.00 0.00 31.97 4.61
8367 14459 4.728860 AGATTGATCTTATTGACCCCACCT 59.271 41.667 0.00 0.00 31.97 4.00
8368 14460 5.911178 AGATTGATCTTATTGACCCCACCTA 59.089 40.000 0.00 0.00 31.97 3.08
8369 14461 6.389869 AGATTGATCTTATTGACCCCACCTAA 59.610 38.462 0.00 0.00 31.97 2.69
8370 14462 6.395780 TTGATCTTATTGACCCCACCTAAA 57.604 37.500 0.00 0.00 0.00 1.85
8371 14463 6.001449 TGATCTTATTGACCCCACCTAAAG 57.999 41.667 0.00 0.00 0.00 1.85
8372 14464 5.729229 TGATCTTATTGACCCCACCTAAAGA 59.271 40.000 0.00 0.00 0.00 2.52
8373 14465 6.389869 TGATCTTATTGACCCCACCTAAAGAT 59.610 38.462 0.00 0.00 0.00 2.40
8374 14466 7.570982 TGATCTTATTGACCCCACCTAAAGATA 59.429 37.037 0.00 0.00 0.00 1.98
8375 14467 7.374975 TCTTATTGACCCCACCTAAAGATAG 57.625 40.000 0.00 0.00 0.00 2.08
8376 14468 7.136885 TCTTATTGACCCCACCTAAAGATAGA 58.863 38.462 0.00 0.00 0.00 1.98
8377 14469 7.794683 TCTTATTGACCCCACCTAAAGATAGAT 59.205 37.037 0.00 0.00 0.00 1.98
8378 14470 5.888982 TTGACCCCACCTAAAGATAGATC 57.111 43.478 0.00 0.00 0.00 2.75
8379 14471 4.232091 TGACCCCACCTAAAGATAGATCC 58.768 47.826 0.00 0.00 0.00 3.36
8380 14472 4.077982 TGACCCCACCTAAAGATAGATCCT 60.078 45.833 0.00 0.00 0.00 3.24
8381 14473 5.137255 TGACCCCACCTAAAGATAGATCCTA 59.863 44.000 0.00 0.00 0.00 2.94
8382 14474 6.183361 TGACCCCACCTAAAGATAGATCCTAT 60.183 42.308 0.00 0.00 0.00 2.57
8383 14475 7.020270 TGACCCCACCTAAAGATAGATCCTATA 59.980 40.741 0.00 0.00 0.00 1.31
8384 14476 7.190501 ACCCCACCTAAAGATAGATCCTATAC 58.809 42.308 0.00 0.00 0.00 1.47
8385 14477 7.189794 CCCCACCTAAAGATAGATCCTATACA 58.810 42.308 0.00 0.00 0.00 2.29
8386 14478 7.343316 CCCCACCTAAAGATAGATCCTATACAG 59.657 44.444 0.00 0.00 0.00 2.74
8387 14479 7.896496 CCCACCTAAAGATAGATCCTATACAGT 59.104 40.741 0.00 0.00 0.00 3.55
8388 14480 9.976776 CCACCTAAAGATAGATCCTATACAGTA 57.023 37.037 0.00 0.00 0.00 2.74
8393 14485 7.948034 AAGATAGATCCTATACAGTACTGGC 57.052 40.000 26.12 5.68 34.19 4.85
8394 14486 7.278724 AGATAGATCCTATACAGTACTGGCT 57.721 40.000 26.12 15.00 34.19 4.75
8395 14487 7.343357 AGATAGATCCTATACAGTACTGGCTC 58.657 42.308 26.12 9.53 34.19 4.70
8396 14488 4.668636 AGATCCTATACAGTACTGGCTCC 58.331 47.826 26.12 7.38 34.19 4.70
8397 14489 3.240310 TCCTATACAGTACTGGCTCCC 57.760 52.381 26.12 0.00 34.19 4.30
8398 14490 1.887198 CCTATACAGTACTGGCTCCCG 59.113 57.143 26.12 9.45 34.19 5.14
8399 14491 2.488528 CCTATACAGTACTGGCTCCCGA 60.489 54.545 26.12 4.13 34.19 5.14
8400 14492 2.154567 ATACAGTACTGGCTCCCGAA 57.845 50.000 26.12 2.46 34.19 4.30
8401 14493 1.927487 TACAGTACTGGCTCCCGAAA 58.073 50.000 26.12 0.00 34.19 3.46
8402 14494 1.053424 ACAGTACTGGCTCCCGAAAA 58.947 50.000 26.12 0.00 34.19 2.29
8403 14495 1.418637 ACAGTACTGGCTCCCGAAAAA 59.581 47.619 26.12 0.00 34.19 1.94
8404 14496 1.804748 CAGTACTGGCTCCCGAAAAAC 59.195 52.381 15.49 0.00 0.00 2.43
8405 14497 1.418637 AGTACTGGCTCCCGAAAAACA 59.581 47.619 0.00 0.00 0.00 2.83
8406 14498 2.158726 AGTACTGGCTCCCGAAAAACAA 60.159 45.455 0.00 0.00 0.00 2.83
8407 14499 1.770294 ACTGGCTCCCGAAAAACAAA 58.230 45.000 0.00 0.00 0.00 2.83
8408 14500 2.316108 ACTGGCTCCCGAAAAACAAAT 58.684 42.857 0.00 0.00 0.00 2.32
8409 14501 2.035832 ACTGGCTCCCGAAAAACAAATG 59.964 45.455 0.00 0.00 0.00 2.32
8410 14502 2.035632 TGGCTCCCGAAAAACAAATGT 58.964 42.857 0.00 0.00 0.00 2.71
8411 14503 2.432510 TGGCTCCCGAAAAACAAATGTT 59.567 40.909 0.00 0.00 40.50 2.71
8412 14504 3.057019 GGCTCCCGAAAAACAAATGTTC 58.943 45.455 0.00 0.00 37.25 3.18
8413 14505 3.057019 GCTCCCGAAAAACAAATGTTCC 58.943 45.455 0.00 0.00 37.25 3.62
8414 14506 3.491792 GCTCCCGAAAAACAAATGTTCCA 60.492 43.478 0.00 0.00 37.25 3.53
8415 14507 4.688021 CTCCCGAAAAACAAATGTTCCAA 58.312 39.130 0.00 0.00 37.25 3.53
8416 14508 4.434520 TCCCGAAAAACAAATGTTCCAAC 58.565 39.130 0.00 0.00 37.25 3.77
8417 14509 4.160626 TCCCGAAAAACAAATGTTCCAACT 59.839 37.500 0.00 0.00 37.25 3.16
8418 14510 4.873259 CCCGAAAAACAAATGTTCCAACTT 59.127 37.500 0.00 0.00 37.25 2.66
8419 14511 5.006261 CCCGAAAAACAAATGTTCCAACTTC 59.994 40.000 0.00 0.00 37.25 3.01
8420 14512 5.578727 CCGAAAAACAAATGTTCCAACTTCA 59.421 36.000 0.00 0.00 37.25 3.02
8421 14513 6.257630 CCGAAAAACAAATGTTCCAACTTCAT 59.742 34.615 0.00 0.00 37.25 2.57
8422 14514 7.118724 CGAAAAACAAATGTTCCAACTTCATG 58.881 34.615 0.00 0.00 37.25 3.07
8423 14515 7.009999 CGAAAAACAAATGTTCCAACTTCATGA 59.990 33.333 0.00 0.00 37.25 3.07
8424 14516 8.558973 AAAAACAAATGTTCCAACTTCATGAA 57.441 26.923 8.12 8.12 37.25 2.57
8425 14517 7.538303 AAACAAATGTTCCAACTTCATGAAC 57.462 32.000 3.38 0.00 37.25 3.18
8431 14523 6.653526 TGTTCCAACTTCATGAACAATGAT 57.346 33.333 3.38 0.00 44.84 2.45
8432 14524 6.680810 TGTTCCAACTTCATGAACAATGATC 58.319 36.000 3.38 0.28 44.84 2.92
8433 14525 5.550232 TCCAACTTCATGAACAATGATCG 57.450 39.130 3.38 0.00 44.84 3.69
8434 14526 5.244755 TCCAACTTCATGAACAATGATCGA 58.755 37.500 3.38 0.00 44.84 3.59
8435 14527 5.882000 TCCAACTTCATGAACAATGATCGAT 59.118 36.000 3.38 0.00 44.84 3.59
8436 14528 5.969435 CCAACTTCATGAACAATGATCGATG 59.031 40.000 0.54 0.00 44.84 3.84
8437 14529 5.746307 ACTTCATGAACAATGATCGATGG 57.254 39.130 0.54 0.00 44.84 3.51
8438 14530 5.430886 ACTTCATGAACAATGATCGATGGA 58.569 37.500 0.54 0.00 44.84 3.41
8439 14531 6.060136 ACTTCATGAACAATGATCGATGGAT 58.940 36.000 0.54 0.00 44.84 3.41
8440 14532 6.204301 ACTTCATGAACAATGATCGATGGATC 59.796 38.462 0.54 10.55 44.84 3.36
8458 14550 4.278975 GATCATGGATCCTACTGGGTTC 57.721 50.000 14.23 3.60 33.37 3.62
8459 14551 3.129262 TCATGGATCCTACTGGGTTCA 57.871 47.619 14.23 0.00 35.94 3.18
8460 14552 3.041211 TCATGGATCCTACTGGGTTCAG 58.959 50.000 14.23 0.00 46.10 3.02
8461 14553 6.691328 GATCATGGATCCTACTGGGTTCAGT 61.691 48.000 14.23 4.42 43.07 3.41
8462 14554 7.428197 GATCATGGATCCTACTGGGTTCAGTA 61.428 46.154 14.23 6.16 41.99 2.74
8463 14555 9.355634 GATCATGGATCCTACTGGGTTCAGTAC 62.356 48.148 14.23 0.00 41.99 2.73
8473 14565 1.917872 GGTTCAGTACCAAATGGGCA 58.082 50.000 4.17 0.00 46.92 5.36
8474 14566 2.243810 GGTTCAGTACCAAATGGGCAA 58.756 47.619 4.17 0.00 46.92 4.52
8475 14567 2.029380 GGTTCAGTACCAAATGGGCAAC 60.029 50.000 4.17 0.00 46.92 4.17
8476 14568 1.529226 TCAGTACCAAATGGGCAACG 58.471 50.000 4.17 0.00 42.05 4.10
8477 14569 0.525761 CAGTACCAAATGGGCAACGG 59.474 55.000 4.17 0.00 42.05 4.44
8478 14570 1.214325 GTACCAAATGGGCAACGGC 59.786 57.895 4.17 0.00 42.05 5.68
8479 14571 1.228583 TACCAAATGGGCAACGGCA 60.229 52.632 4.17 0.00 43.71 5.69
8480 14572 0.827925 TACCAAATGGGCAACGGCAA 60.828 50.000 4.17 0.00 43.71 4.52
8481 14573 1.070445 CCAAATGGGCAACGGCAAA 59.930 52.632 0.00 0.00 43.71 3.68
8482 14574 1.227342 CCAAATGGGCAACGGCAAAC 61.227 55.000 0.00 0.00 43.71 2.93
8492 14584 3.334751 CGGCAAACGCACGACAGA 61.335 61.111 0.00 0.00 34.82 3.41
8493 14585 2.876879 CGGCAAACGCACGACAGAA 61.877 57.895 0.00 0.00 34.82 3.02
8494 14586 1.368850 GGCAAACGCACGACAGAAC 60.369 57.895 0.00 0.00 0.00 3.01
8495 14587 1.350319 GCAAACGCACGACAGAACA 59.650 52.632 0.00 0.00 0.00 3.18
8496 14588 0.041312 GCAAACGCACGACAGAACAT 60.041 50.000 0.00 0.00 0.00 2.71
8497 14589 1.662360 CAAACGCACGACAGAACATG 58.338 50.000 0.00 0.00 0.00 3.21
8499 14591 1.295792 AACGCACGACAGAACATGTT 58.704 45.000 11.78 11.78 44.17 2.71
8500 14592 2.143008 ACGCACGACAGAACATGTTA 57.857 45.000 11.95 0.00 44.17 2.41
8501 14593 1.790623 ACGCACGACAGAACATGTTAC 59.209 47.619 11.95 5.54 44.17 2.50
8502 14594 1.201661 CGCACGACAGAACATGTTACG 60.202 52.381 11.95 16.14 44.17 3.18
8503 14595 1.126113 GCACGACAGAACATGTTACGG 59.874 52.381 11.95 8.58 44.17 4.02
8504 14596 2.668250 CACGACAGAACATGTTACGGA 58.332 47.619 11.95 0.00 44.17 4.69
8505 14597 2.661675 CACGACAGAACATGTTACGGAG 59.338 50.000 11.95 6.21 44.17 4.63
8506 14598 1.654105 CGACAGAACATGTTACGGAGC 59.346 52.381 11.95 0.00 44.17 4.70
8507 14599 2.671351 CGACAGAACATGTTACGGAGCT 60.671 50.000 11.95 0.00 44.17 4.09
8508 14600 2.924290 GACAGAACATGTTACGGAGCTC 59.076 50.000 11.95 4.71 44.17 4.09
8509 14601 2.299013 ACAGAACATGTTACGGAGCTCA 59.701 45.455 17.19 0.00 39.96 4.26
8510 14602 3.055819 ACAGAACATGTTACGGAGCTCAT 60.056 43.478 17.19 5.44 39.96 2.90
8511 14603 3.308053 CAGAACATGTTACGGAGCTCATG 59.692 47.826 17.19 12.32 42.00 3.07
8513 14605 2.621338 ACATGTTACGGAGCTCATGTG 58.379 47.619 17.19 4.50 45.64 3.21
8514 14606 2.233676 ACATGTTACGGAGCTCATGTGA 59.766 45.455 17.19 7.38 45.64 3.58
8515 14607 3.261580 CATGTTACGGAGCTCATGTGAA 58.738 45.455 17.19 6.19 34.73 3.18
8516 14608 3.394674 TGTTACGGAGCTCATGTGAAA 57.605 42.857 17.19 2.42 0.00 2.69
8517 14609 3.325870 TGTTACGGAGCTCATGTGAAAG 58.674 45.455 17.19 0.00 0.00 2.62
8518 14610 2.010145 TACGGAGCTCATGTGAAAGC 57.990 50.000 17.19 0.00 38.84 3.51
8519 14611 1.016130 ACGGAGCTCATGTGAAAGCG 61.016 55.000 17.19 8.81 43.37 4.68
8520 14612 1.699656 CGGAGCTCATGTGAAAGCGG 61.700 60.000 17.19 0.00 43.37 5.52
8521 14613 1.372087 GGAGCTCATGTGAAAGCGGG 61.372 60.000 17.19 0.00 43.37 6.13
8522 14614 1.986575 GAGCTCATGTGAAAGCGGGC 61.987 60.000 9.40 0.00 43.37 6.13
8523 14615 3.056313 GCTCATGTGAAAGCGGGCC 62.056 63.158 0.00 0.00 0.00 5.80
8524 14616 1.675310 CTCATGTGAAAGCGGGCCA 60.675 57.895 4.39 0.00 0.00 5.36
8525 14617 1.228398 TCATGTGAAAGCGGGCCAA 60.228 52.632 4.39 0.00 0.00 4.52
8526 14618 1.213537 CATGTGAAAGCGGGCCAAG 59.786 57.895 4.39 0.00 0.00 3.61
8527 14619 1.074775 ATGTGAAAGCGGGCCAAGA 59.925 52.632 4.39 0.00 0.00 3.02
8528 14620 0.323725 ATGTGAAAGCGGGCCAAGAT 60.324 50.000 4.39 0.00 0.00 2.40
8529 14621 0.960364 TGTGAAAGCGGGCCAAGATC 60.960 55.000 4.39 0.00 0.00 2.75
8530 14622 1.745115 TGAAAGCGGGCCAAGATCG 60.745 57.895 4.39 0.00 0.00 3.69
8531 14623 2.438434 AAAGCGGGCCAAGATCGG 60.438 61.111 4.39 0.00 0.00 4.18
8532 14624 3.268103 AAAGCGGGCCAAGATCGGT 62.268 57.895 4.39 0.00 36.13 4.69
8533 14625 3.682292 AAGCGGGCCAAGATCGGTC 62.682 63.158 4.39 0.00 33.39 4.79
8535 14627 4.143333 CGGGCCAAGATCGGTCGT 62.143 66.667 4.39 0.00 0.00 4.34
8536 14628 2.202892 GGGCCAAGATCGGTCGTC 60.203 66.667 4.39 0.00 0.00 4.20
8537 14629 2.202892 GGCCAAGATCGGTCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
8538 14630 2.202892 GCCAAGATCGGTCGTCCC 60.203 66.667 0.00 0.00 0.00 4.46
8539 14631 3.014085 GCCAAGATCGGTCGTCCCA 62.014 63.158 0.00 0.00 0.00 4.37
8540 14632 1.153628 CCAAGATCGGTCGTCCCAC 60.154 63.158 0.00 0.00 0.00 4.61
8541 14633 1.516386 CAAGATCGGTCGTCCCACG 60.516 63.158 0.00 0.00 44.19 4.94
8542 14634 1.975407 AAGATCGGTCGTCCCACGT 60.975 57.895 0.00 0.00 43.14 4.49
8543 14635 1.530013 AAGATCGGTCGTCCCACGTT 61.530 55.000 0.00 0.00 43.14 3.99
8544 14636 1.080298 GATCGGTCGTCCCACGTTT 60.080 57.895 0.00 0.00 43.14 3.60
8545 14637 1.074872 GATCGGTCGTCCCACGTTTC 61.075 60.000 0.00 0.00 43.14 2.78
8546 14638 2.496828 ATCGGTCGTCCCACGTTTCC 62.497 60.000 0.00 0.00 43.14 3.13
8547 14639 2.422591 GGTCGTCCCACGTTTCCA 59.577 61.111 0.00 0.00 43.14 3.53
8548 14640 1.004200 GGTCGTCCCACGTTTCCAT 60.004 57.895 0.00 0.00 43.14 3.41
8549 14641 1.296056 GGTCGTCCCACGTTTCCATG 61.296 60.000 0.00 0.00 43.14 3.66
8550 14642 0.601841 GTCGTCCCACGTTTCCATGT 60.602 55.000 0.00 0.00 43.14 3.21
8551 14643 0.601576 TCGTCCCACGTTTCCATGTG 60.602 55.000 0.00 0.00 43.14 3.21
8579 14671 6.569179 TTTTTATGGACAAGTACAGGCTTC 57.431 37.500 0.00 0.00 0.00 3.86
8580 14672 2.386661 ATGGACAAGTACAGGCTTCG 57.613 50.000 0.00 0.00 0.00 3.79
8581 14673 0.320374 TGGACAAGTACAGGCTTCGG 59.680 55.000 0.00 0.00 0.00 4.30
8582 14674 0.606604 GGACAAGTACAGGCTTCGGA 59.393 55.000 0.00 0.00 0.00 4.55
8583 14675 1.404315 GGACAAGTACAGGCTTCGGAG 60.404 57.143 0.00 0.00 0.00 4.63
8593 14685 3.153024 GCTTCGGAGCCATACAACA 57.847 52.632 3.57 0.00 43.29 3.33
8594 14686 1.009829 GCTTCGGAGCCATACAACAG 58.990 55.000 3.57 0.00 43.29 3.16
8595 14687 1.009829 CTTCGGAGCCATACAACAGC 58.990 55.000 0.00 0.00 0.00 4.40
8596 14688 0.323302 TTCGGAGCCATACAACAGCA 59.677 50.000 0.00 0.00 0.00 4.41
8597 14689 0.391130 TCGGAGCCATACAACAGCAC 60.391 55.000 0.00 0.00 0.00 4.40
8598 14690 0.673333 CGGAGCCATACAACAGCACA 60.673 55.000 0.00 0.00 0.00 4.57
8599 14691 1.533625 GGAGCCATACAACAGCACAA 58.466 50.000 0.00 0.00 0.00 3.33
8600 14692 1.470098 GGAGCCATACAACAGCACAAG 59.530 52.381 0.00 0.00 0.00 3.16
8601 14693 2.154462 GAGCCATACAACAGCACAAGT 58.846 47.619 0.00 0.00 0.00 3.16
8602 14694 1.881973 AGCCATACAACAGCACAAGTG 59.118 47.619 0.00 0.00 0.00 3.16
8603 14695 1.608590 GCCATACAACAGCACAAGTGT 59.391 47.619 1.79 0.00 0.00 3.55
8604 14696 2.811431 GCCATACAACAGCACAAGTGTA 59.189 45.455 1.79 0.00 0.00 2.90
8605 14697 3.364964 GCCATACAACAGCACAAGTGTAC 60.365 47.826 1.79 0.00 0.00 2.90
8606 14698 3.812609 CCATACAACAGCACAAGTGTACA 59.187 43.478 1.79 0.00 0.00 2.90
8607 14699 4.083855 CCATACAACAGCACAAGTGTACAG 60.084 45.833 0.00 0.00 0.00 2.74
8608 14700 3.260475 ACAACAGCACAAGTGTACAGA 57.740 42.857 0.00 0.00 0.00 3.41
8609 14701 3.198068 ACAACAGCACAAGTGTACAGAG 58.802 45.455 0.00 0.00 0.00 3.35
8610 14702 3.118775 ACAACAGCACAAGTGTACAGAGA 60.119 43.478 0.00 0.00 0.00 3.10
8611 14703 3.819564 ACAGCACAAGTGTACAGAGAA 57.180 42.857 0.00 0.00 0.00 2.87
8612 14704 3.458189 ACAGCACAAGTGTACAGAGAAC 58.542 45.455 0.00 0.00 0.00 3.01
8613 14705 2.802816 CAGCACAAGTGTACAGAGAACC 59.197 50.000 0.00 0.00 0.00 3.62
8614 14706 1.792949 GCACAAGTGTACAGAGAACCG 59.207 52.381 0.00 0.00 0.00 4.44
8615 14707 1.792949 CACAAGTGTACAGAGAACCGC 59.207 52.381 0.00 0.00 0.00 5.68
8616 14708 1.270147 ACAAGTGTACAGAGAACCGCC 60.270 52.381 0.00 0.00 0.00 6.13
8617 14709 0.320697 AAGTGTACAGAGAACCGCCC 59.679 55.000 0.00 0.00 0.00 6.13
8618 14710 0.830444 AGTGTACAGAGAACCGCCCA 60.830 55.000 0.00 0.00 0.00 5.36
8619 14711 0.034337 GTGTACAGAGAACCGCCCAA 59.966 55.000 0.00 0.00 0.00 4.12
8620 14712 0.981183 TGTACAGAGAACCGCCCAAT 59.019 50.000 0.00 0.00 0.00 3.16
8621 14713 1.338674 TGTACAGAGAACCGCCCAATG 60.339 52.381 0.00 0.00 0.00 2.82
8622 14714 0.981183 TACAGAGAACCGCCCAATGT 59.019 50.000 0.00 0.00 0.00 2.71
8623 14715 0.606401 ACAGAGAACCGCCCAATGTG 60.606 55.000 0.00 0.00 0.00 3.21
8624 14716 1.675641 AGAGAACCGCCCAATGTGC 60.676 57.895 0.00 0.00 0.00 4.57
8630 14722 3.353029 CGCCCAATGTGCGTGTCA 61.353 61.111 1.13 0.00 46.59 3.58
8631 14723 2.689785 CGCCCAATGTGCGTGTCAT 61.690 57.895 1.13 0.00 46.59 3.06
8632 14724 1.137404 GCCCAATGTGCGTGTCATC 59.863 57.895 0.00 0.00 0.00 2.92
8633 14725 1.308069 GCCCAATGTGCGTGTCATCT 61.308 55.000 0.00 0.00 0.00 2.90
8634 14726 1.167851 CCCAATGTGCGTGTCATCTT 58.832 50.000 0.00 0.00 0.00 2.40
8635 14727 1.131126 CCCAATGTGCGTGTCATCTTC 59.869 52.381 0.00 0.00 0.00 2.87
8636 14728 2.079158 CCAATGTGCGTGTCATCTTCT 58.921 47.619 0.00 0.00 0.00 2.85
8637 14729 2.094894 CCAATGTGCGTGTCATCTTCTC 59.905 50.000 0.00 0.00 0.00 2.87
8638 14730 2.015736 ATGTGCGTGTCATCTTCTCC 57.984 50.000 0.00 0.00 0.00 3.71
8639 14731 0.037326 TGTGCGTGTCATCTTCTCCC 60.037 55.000 0.00 0.00 0.00 4.30
8640 14732 1.078759 GTGCGTGTCATCTTCTCCCG 61.079 60.000 0.00 0.00 0.00 5.14
8641 14733 1.519455 GCGTGTCATCTTCTCCCGG 60.519 63.158 0.00 0.00 0.00 5.73
8642 14734 1.945354 GCGTGTCATCTTCTCCCGGA 61.945 60.000 0.73 0.00 0.00 5.14
8643 14735 0.530744 CGTGTCATCTTCTCCCGGAA 59.469 55.000 0.73 0.00 0.00 4.30
8653 14745 4.946784 CTTCTCCCGGAAGTATTGTTTG 57.053 45.455 0.73 0.00 44.59 2.93
8654 14746 3.343941 TCTCCCGGAAGTATTGTTTGG 57.656 47.619 0.73 0.00 0.00 3.28
8655 14747 2.640826 TCTCCCGGAAGTATTGTTTGGT 59.359 45.455 0.73 0.00 0.00 3.67
8656 14748 3.073356 TCTCCCGGAAGTATTGTTTGGTT 59.927 43.478 0.73 0.00 0.00 3.67
8657 14749 3.150767 TCCCGGAAGTATTGTTTGGTTG 58.849 45.455 0.73 0.00 0.00 3.77
8658 14750 2.230266 CCCGGAAGTATTGTTTGGTTGG 59.770 50.000 0.73 0.00 0.00 3.77
8659 14751 2.352323 CCGGAAGTATTGTTTGGTTGGC 60.352 50.000 0.00 0.00 0.00 4.52
8660 14752 2.294791 CGGAAGTATTGTTTGGTTGGCA 59.705 45.455 0.00 0.00 0.00 4.92
8661 14753 3.243569 CGGAAGTATTGTTTGGTTGGCAA 60.244 43.478 0.00 0.00 0.00 4.52
8662 14754 4.698575 GGAAGTATTGTTTGGTTGGCAAA 58.301 39.130 0.00 0.00 0.00 3.68
8663 14755 4.749598 GGAAGTATTGTTTGGTTGGCAAAG 59.250 41.667 0.00 0.00 0.00 2.77
8664 14756 5.452636 GGAAGTATTGTTTGGTTGGCAAAGA 60.453 40.000 0.00 0.00 0.00 2.52
8665 14757 5.806654 AGTATTGTTTGGTTGGCAAAGAT 57.193 34.783 0.00 0.00 0.00 2.40
8666 14758 6.909550 AGTATTGTTTGGTTGGCAAAGATA 57.090 33.333 0.00 0.00 0.00 1.98
8667 14759 6.687604 AGTATTGTTTGGTTGGCAAAGATAC 58.312 36.000 0.00 0.00 0.00 2.24
8668 14760 3.634568 TGTTTGGTTGGCAAAGATACG 57.365 42.857 0.00 0.00 0.00 3.06
8669 14761 2.952978 TGTTTGGTTGGCAAAGATACGT 59.047 40.909 0.00 0.00 0.00 3.57
8670 14762 4.135306 TGTTTGGTTGGCAAAGATACGTA 58.865 39.130 0.00 0.00 0.00 3.57
8671 14763 4.023878 TGTTTGGTTGGCAAAGATACGTAC 60.024 41.667 0.00 0.00 0.00 3.67
8672 14764 3.404224 TGGTTGGCAAAGATACGTACA 57.596 42.857 0.00 0.00 0.00 2.90
8673 14765 3.331150 TGGTTGGCAAAGATACGTACAG 58.669 45.455 0.00 0.00 0.00 2.74
8674 14766 2.095372 GGTTGGCAAAGATACGTACAGC 59.905 50.000 0.00 0.00 0.00 4.40
8675 14767 2.739913 GTTGGCAAAGATACGTACAGCA 59.260 45.455 0.00 0.00 0.00 4.41
8676 14768 3.046968 TGGCAAAGATACGTACAGCAA 57.953 42.857 0.00 0.00 0.00 3.91
8677 14769 3.403968 TGGCAAAGATACGTACAGCAAA 58.596 40.909 0.00 0.00 0.00 3.68
8678 14770 3.815962 TGGCAAAGATACGTACAGCAAAA 59.184 39.130 0.00 0.00 0.00 2.44
8679 14771 4.457603 TGGCAAAGATACGTACAGCAAAAT 59.542 37.500 0.00 0.00 0.00 1.82
8680 14772 5.028375 GGCAAAGATACGTACAGCAAAATC 58.972 41.667 0.00 0.00 0.00 2.17
8681 14773 4.723862 GCAAAGATACGTACAGCAAAATCG 59.276 41.667 0.00 0.00 0.00 3.34
8682 14774 5.445407 GCAAAGATACGTACAGCAAAATCGA 60.445 40.000 0.00 0.00 0.00 3.59
8683 14775 6.530567 CAAAGATACGTACAGCAAAATCGAA 58.469 36.000 0.00 0.00 0.00 3.71
8684 14776 5.697848 AGATACGTACAGCAAAATCGAAC 57.302 39.130 0.00 0.00 0.00 3.95
8685 14777 5.408356 AGATACGTACAGCAAAATCGAACT 58.592 37.500 0.00 0.00 0.00 3.01
8686 14778 5.515626 AGATACGTACAGCAAAATCGAACTC 59.484 40.000 0.00 0.00 0.00 3.01
8687 14779 3.386486 ACGTACAGCAAAATCGAACTCA 58.614 40.909 0.00 0.00 0.00 3.41
8688 14780 3.183775 ACGTACAGCAAAATCGAACTCAC 59.816 43.478 0.00 0.00 0.00 3.51
8689 14781 3.183574 CGTACAGCAAAATCGAACTCACA 59.816 43.478 0.00 0.00 0.00 3.58
8690 14782 4.318475 CGTACAGCAAAATCGAACTCACAA 60.318 41.667 0.00 0.00 0.00 3.33
8691 14783 4.630894 ACAGCAAAATCGAACTCACAAA 57.369 36.364 0.00 0.00 0.00 2.83
8692 14784 5.186996 ACAGCAAAATCGAACTCACAAAT 57.813 34.783 0.00 0.00 0.00 2.32
8693 14785 4.977963 ACAGCAAAATCGAACTCACAAATG 59.022 37.500 0.00 0.00 0.00 2.32
8694 14786 4.383649 CAGCAAAATCGAACTCACAAATGG 59.616 41.667 0.00 0.00 0.00 3.16
8695 14787 3.674753 GCAAAATCGAACTCACAAATGGG 59.325 43.478 0.00 0.00 0.00 4.00
8696 14788 3.575965 AAATCGAACTCACAAATGGGC 57.424 42.857 0.00 0.00 0.00 5.36
8697 14789 2.198827 ATCGAACTCACAAATGGGCA 57.801 45.000 0.00 0.00 0.00 5.36
8698 14790 1.974265 TCGAACTCACAAATGGGCAA 58.026 45.000 0.00 0.00 0.00 4.52
8699 14791 1.606668 TCGAACTCACAAATGGGCAAC 59.393 47.619 0.00 0.00 0.00 4.17
8712 14804 2.399856 GGCAACCAAGTGACAACGA 58.600 52.632 0.00 0.00 0.00 3.85
8713 14805 0.736053 GGCAACCAAGTGACAACGAA 59.264 50.000 0.00 0.00 0.00 3.85
8714 14806 1.133407 GGCAACCAAGTGACAACGAAA 59.867 47.619 0.00 0.00 0.00 3.46
8715 14807 2.450160 GCAACCAAGTGACAACGAAAG 58.550 47.619 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.894699 AAGGGGAGGATGGTAGGAAC 58.105 55.000 0.00 0.00 0.00 3.62
1435 4319 4.019174 CCTCTTCCCTGCAATAACACAAT 58.981 43.478 0.00 0.00 0.00 2.71
1824 7592 1.795286 GCTACTTGATAGCGATGGTGC 59.205 52.381 0.00 0.00 46.80 5.01
1835 7603 3.539604 GTGATTGCTGGAGCTACTTGAT 58.460 45.455 0.00 0.00 42.66 2.57
2117 7888 9.260002 CTTGCCAAAGTTGAAACATAAGTAAAT 57.740 29.630 0.00 0.00 0.00 1.40
2775 8553 3.188460 CCTGAACCAAACAGTGATTACCG 59.812 47.826 0.00 0.00 34.04 4.02
2934 8712 8.256356 AGAAGCTACTTCCTATATGAACACAT 57.744 34.615 3.77 0.00 40.98 3.21
3239 9018 6.335777 CAGAGAATGACATGTACATGAGTGA 58.664 40.000 36.36 19.19 41.20 3.41
3553 9332 1.238439 CGTCAAACCTGGAAGTGCAT 58.762 50.000 0.00 0.00 0.00 3.96
3759 9539 4.528206 TCTGATCTGTGTAGCTTTCAAGGA 59.472 41.667 0.00 0.00 0.00 3.36
5251 11081 5.450453 TGGTTATTGTTTCTCCTGGAACAA 58.550 37.500 13.25 13.25 38.70 2.83
5272 11102 5.067153 TGTTGGTTACTGTTTCTGTTCATGG 59.933 40.000 0.00 0.00 0.00 3.66
5878 11961 0.706433 ATCATGGAAACCTGCCCAGT 59.294 50.000 0.00 0.00 35.67 4.00
5908 11991 7.750229 ACAATCAGCAAGAACTTCATAAAGA 57.250 32.000 0.00 0.00 36.30 2.52
6229 12312 5.163519 GGGTAGTATCAAGCCTTACGTACAA 60.164 44.000 0.00 0.00 0.00 2.41
6981 13066 7.041721 CCGCAACCATATAGATCTAATAGCAA 58.958 38.462 6.52 0.00 0.00 3.91
7718 13810 7.284489 ACATTCAGCAAAGTTTACCAGAAACTA 59.716 33.333 3.28 0.00 39.36 2.24
7852 13944 2.553247 GCAGCAAGGGAGGACTAAAGTT 60.553 50.000 0.00 0.00 0.00 2.66
8253 14345 6.701841 CACGAGTGTGCATATCTTTACCTAAT 59.298 38.462 0.00 0.00 39.67 1.73
8254 14346 6.040247 CACGAGTGTGCATATCTTTACCTAA 58.960 40.000 0.00 0.00 39.67 2.69
8255 14347 5.588240 CACGAGTGTGCATATCTTTACCTA 58.412 41.667 0.00 0.00 39.67 3.08
8256 14348 4.433615 CACGAGTGTGCATATCTTTACCT 58.566 43.478 0.00 0.00 39.67 3.08
8257 14349 4.778842 CACGAGTGTGCATATCTTTACC 57.221 45.455 0.00 0.00 39.67 2.85
8294 14386 4.037923 ACCGCTGAAAATGTTTGAAGACAT 59.962 37.500 0.00 0.00 41.83 3.06
8295 14387 3.380004 ACCGCTGAAAATGTTTGAAGACA 59.620 39.130 0.00 0.00 0.00 3.41
8296 14388 3.964909 ACCGCTGAAAATGTTTGAAGAC 58.035 40.909 0.00 0.00 0.00 3.01
8297 14389 4.647424 AACCGCTGAAAATGTTTGAAGA 57.353 36.364 0.00 0.00 0.00 2.87
8298 14390 5.290643 TCAAAACCGCTGAAAATGTTTGAAG 59.709 36.000 0.00 0.00 31.73 3.02
8299 14391 5.171476 TCAAAACCGCTGAAAATGTTTGAA 58.829 33.333 0.00 0.00 31.73 2.69
8300 14392 4.748892 TCAAAACCGCTGAAAATGTTTGA 58.251 34.783 0.00 0.00 31.73 2.69
8301 14393 5.462034 TTCAAAACCGCTGAAAATGTTTG 57.538 34.783 0.00 0.00 31.73 2.93
8302 14394 7.440856 ACATATTCAAAACCGCTGAAAATGTTT 59.559 29.630 0.00 0.00 36.43 2.83
8303 14395 6.928492 ACATATTCAAAACCGCTGAAAATGTT 59.072 30.769 0.00 0.00 36.43 2.71
8304 14396 6.454795 ACATATTCAAAACCGCTGAAAATGT 58.545 32.000 0.00 0.00 36.43 2.71
8305 14397 6.949578 ACATATTCAAAACCGCTGAAAATG 57.050 33.333 0.00 0.00 36.43 2.32
8306 14398 7.961325 AAACATATTCAAAACCGCTGAAAAT 57.039 28.000 0.00 0.00 36.43 1.82
8307 14399 7.278868 ACAAAACATATTCAAAACCGCTGAAAA 59.721 29.630 0.00 0.00 36.43 2.29
8308 14400 6.758886 ACAAAACATATTCAAAACCGCTGAAA 59.241 30.769 0.00 0.00 36.43 2.69
8309 14401 6.276847 ACAAAACATATTCAAAACCGCTGAA 58.723 32.000 0.00 0.00 37.22 3.02
8310 14402 5.837437 ACAAAACATATTCAAAACCGCTGA 58.163 33.333 0.00 0.00 0.00 4.26
8311 14403 6.088883 GGTACAAAACATATTCAAAACCGCTG 59.911 38.462 0.00 0.00 0.00 5.18
8312 14404 6.015772 AGGTACAAAACATATTCAAAACCGCT 60.016 34.615 0.00 0.00 0.00 5.52
8313 14405 6.153756 AGGTACAAAACATATTCAAAACCGC 58.846 36.000 0.00 0.00 0.00 5.68
8314 14406 7.863375 TGAAGGTACAAAACATATTCAAAACCG 59.137 33.333 0.00 0.00 0.00 4.44
8315 14407 9.535878 TTGAAGGTACAAAACATATTCAAAACC 57.464 29.630 0.00 0.00 35.44 3.27
8320 14412 9.567776 TCTCTTTGAAGGTACAAAACATATTCA 57.432 29.630 0.00 0.00 38.90 2.57
8324 14416 9.567776 TCAATCTCTTTGAAGGTACAAAACATA 57.432 29.630 0.00 0.00 41.38 2.29
8325 14417 8.463930 TCAATCTCTTTGAAGGTACAAAACAT 57.536 30.769 0.00 0.00 41.38 2.71
8326 14418 7.873719 TCAATCTCTTTGAAGGTACAAAACA 57.126 32.000 0.00 0.00 41.38 2.83
8339 14431 6.830324 TGGGGTCAATAAGATCAATCTCTTTG 59.170 38.462 0.00 1.72 36.82 2.77
8340 14432 6.830838 GTGGGGTCAATAAGATCAATCTCTTT 59.169 38.462 0.00 0.00 36.82 2.52
8341 14433 6.360618 GTGGGGTCAATAAGATCAATCTCTT 58.639 40.000 0.00 0.00 38.90 2.85
8342 14434 5.163152 GGTGGGGTCAATAAGATCAATCTCT 60.163 44.000 0.00 0.00 35.76 3.10
8343 14435 5.066593 GGTGGGGTCAATAAGATCAATCTC 58.933 45.833 0.00 0.00 35.76 2.75
8344 14436 4.728860 AGGTGGGGTCAATAAGATCAATCT 59.271 41.667 0.00 0.00 39.22 2.40
8345 14437 5.053978 AGGTGGGGTCAATAAGATCAATC 57.946 43.478 0.00 0.00 0.00 2.67
8346 14438 6.590656 TTAGGTGGGGTCAATAAGATCAAT 57.409 37.500 0.00 0.00 0.00 2.57
8347 14439 6.216662 TCTTTAGGTGGGGTCAATAAGATCAA 59.783 38.462 0.00 0.00 0.00 2.57
8348 14440 5.729229 TCTTTAGGTGGGGTCAATAAGATCA 59.271 40.000 0.00 0.00 0.00 2.92
8349 14441 6.248569 TCTTTAGGTGGGGTCAATAAGATC 57.751 41.667 0.00 0.00 0.00 2.75
8350 14442 6.848562 ATCTTTAGGTGGGGTCAATAAGAT 57.151 37.500 0.00 0.00 0.00 2.40
8351 14443 7.136885 TCTATCTTTAGGTGGGGTCAATAAGA 58.863 38.462 0.00 0.00 0.00 2.10
8352 14444 7.374975 TCTATCTTTAGGTGGGGTCAATAAG 57.625 40.000 0.00 0.00 0.00 1.73
8353 14445 7.017254 GGATCTATCTTTAGGTGGGGTCAATAA 59.983 40.741 0.00 0.00 0.00 1.40
8354 14446 6.500751 GGATCTATCTTTAGGTGGGGTCAATA 59.499 42.308 0.00 0.00 0.00 1.90
8355 14447 5.310857 GGATCTATCTTTAGGTGGGGTCAAT 59.689 44.000 0.00 0.00 0.00 2.57
8356 14448 4.658901 GGATCTATCTTTAGGTGGGGTCAA 59.341 45.833 0.00 0.00 0.00 3.18
8357 14449 4.077982 AGGATCTATCTTTAGGTGGGGTCA 60.078 45.833 0.00 0.00 0.00 4.02
8358 14450 4.494591 AGGATCTATCTTTAGGTGGGGTC 58.505 47.826 0.00 0.00 0.00 4.46
8359 14451 4.578149 AGGATCTATCTTTAGGTGGGGT 57.422 45.455 0.00 0.00 0.00 4.95
8360 14452 7.189794 TGTATAGGATCTATCTTTAGGTGGGG 58.810 42.308 0.00 0.00 0.00 4.96
8361 14453 7.896496 ACTGTATAGGATCTATCTTTAGGTGGG 59.104 40.741 0.00 0.00 0.00 4.61
8362 14454 8.887264 ACTGTATAGGATCTATCTTTAGGTGG 57.113 38.462 0.00 0.00 0.00 4.61
8367 14459 9.463902 GCCAGTACTGTATAGGATCTATCTTTA 57.536 37.037 21.18 0.00 0.00 1.85
8368 14460 8.174085 AGCCAGTACTGTATAGGATCTATCTTT 58.826 37.037 21.18 0.00 0.00 2.52
8369 14461 7.704727 AGCCAGTACTGTATAGGATCTATCTT 58.295 38.462 21.18 0.00 0.00 2.40
8370 14462 7.278724 AGCCAGTACTGTATAGGATCTATCT 57.721 40.000 21.18 0.00 0.00 1.98
8371 14463 6.544564 GGAGCCAGTACTGTATAGGATCTATC 59.455 46.154 21.18 0.00 35.25 2.08
8372 14464 6.428295 GGAGCCAGTACTGTATAGGATCTAT 58.572 44.000 21.18 0.00 35.25 1.98
8373 14465 5.281089 GGGAGCCAGTACTGTATAGGATCTA 60.281 48.000 21.18 0.00 35.25 1.98
8374 14466 4.509482 GGGAGCCAGTACTGTATAGGATCT 60.509 50.000 21.18 5.27 35.25 2.75
8375 14467 3.764972 GGGAGCCAGTACTGTATAGGATC 59.235 52.174 21.18 13.20 34.19 3.36
8376 14468 3.780626 GGGAGCCAGTACTGTATAGGAT 58.219 50.000 21.18 4.29 0.00 3.24
8377 14469 2.488528 CGGGAGCCAGTACTGTATAGGA 60.489 54.545 21.18 0.00 0.00 2.94
8378 14470 1.887198 CGGGAGCCAGTACTGTATAGG 59.113 57.143 21.18 6.97 0.00 2.57
8379 14471 2.860009 TCGGGAGCCAGTACTGTATAG 58.140 52.381 21.18 7.27 0.00 1.31
8380 14472 3.301794 TTCGGGAGCCAGTACTGTATA 57.698 47.619 21.18 0.00 0.00 1.47
8381 14473 2.154567 TTCGGGAGCCAGTACTGTAT 57.845 50.000 21.18 9.33 0.00 2.29
8382 14474 1.927487 TTTCGGGAGCCAGTACTGTA 58.073 50.000 21.18 0.00 0.00 2.74
8383 14475 1.053424 TTTTCGGGAGCCAGTACTGT 58.947 50.000 21.18 3.76 0.00 3.55
8384 14476 1.804748 GTTTTTCGGGAGCCAGTACTG 59.195 52.381 16.34 16.34 0.00 2.74
8385 14477 1.418637 TGTTTTTCGGGAGCCAGTACT 59.581 47.619 0.00 0.00 0.00 2.73
8386 14478 1.886886 TGTTTTTCGGGAGCCAGTAC 58.113 50.000 0.00 0.00 0.00 2.73
8387 14479 2.642154 TTGTTTTTCGGGAGCCAGTA 57.358 45.000 0.00 0.00 0.00 2.74
8388 14480 1.770294 TTTGTTTTTCGGGAGCCAGT 58.230 45.000 0.00 0.00 0.00 4.00
8389 14481 2.035832 ACATTTGTTTTTCGGGAGCCAG 59.964 45.455 0.00 0.00 0.00 4.85
8390 14482 2.035632 ACATTTGTTTTTCGGGAGCCA 58.964 42.857 0.00 0.00 0.00 4.75
8391 14483 2.812358 ACATTTGTTTTTCGGGAGCC 57.188 45.000 0.00 0.00 0.00 4.70
8392 14484 3.057019 GGAACATTTGTTTTTCGGGAGC 58.943 45.455 0.00 0.00 38.56 4.70
8393 14485 4.314740 TGGAACATTTGTTTTTCGGGAG 57.685 40.909 0.00 0.00 38.56 4.30
8394 14486 4.160626 AGTTGGAACATTTGTTTTTCGGGA 59.839 37.500 0.00 0.00 39.30 5.14
8395 14487 4.438148 AGTTGGAACATTTGTTTTTCGGG 58.562 39.130 0.00 0.00 39.30 5.14
8396 14488 5.578727 TGAAGTTGGAACATTTGTTTTTCGG 59.421 36.000 0.00 0.00 39.30 4.30
8397 14489 6.639671 TGAAGTTGGAACATTTGTTTTTCG 57.360 33.333 0.00 0.00 39.30 3.46
8398 14490 8.195617 TCATGAAGTTGGAACATTTGTTTTTC 57.804 30.769 0.00 0.00 39.30 2.29
8399 14491 8.450180 GTTCATGAAGTTGGAACATTTGTTTTT 58.550 29.630 8.80 0.00 40.39 1.94
8400 14492 7.605691 TGTTCATGAAGTTGGAACATTTGTTTT 59.394 29.630 8.80 0.00 44.14 2.43
8401 14493 7.102346 TGTTCATGAAGTTGGAACATTTGTTT 58.898 30.769 8.80 0.00 44.14 2.83
8402 14494 6.638610 TGTTCATGAAGTTGGAACATTTGTT 58.361 32.000 8.80 0.00 44.14 2.83
8403 14495 6.219417 TGTTCATGAAGTTGGAACATTTGT 57.781 33.333 8.80 0.00 44.14 2.83
8408 14500 6.568271 CGATCATTGTTCATGAAGTTGGAACA 60.568 38.462 8.80 0.00 45.45 3.18
8409 14501 5.796935 CGATCATTGTTCATGAAGTTGGAAC 59.203 40.000 8.80 3.29 45.45 3.62
8410 14502 5.704978 TCGATCATTGTTCATGAAGTTGGAA 59.295 36.000 8.80 0.00 45.45 3.53
8411 14503 5.244755 TCGATCATTGTTCATGAAGTTGGA 58.755 37.500 8.80 5.39 45.45 3.53
8412 14504 5.550232 TCGATCATTGTTCATGAAGTTGG 57.450 39.130 8.80 0.00 45.45 3.77
8413 14505 5.969435 CCATCGATCATTGTTCATGAAGTTG 59.031 40.000 8.80 7.09 45.45 3.16
8414 14506 5.882000 TCCATCGATCATTGTTCATGAAGTT 59.118 36.000 8.80 0.00 45.45 2.66
8415 14507 5.430886 TCCATCGATCATTGTTCATGAAGT 58.569 37.500 8.80 0.00 45.45 3.01
8416 14508 5.996669 TCCATCGATCATTGTTCATGAAG 57.003 39.130 8.80 0.00 45.45 3.02
8417 14509 6.549912 GATCCATCGATCATTGTTCATGAA 57.450 37.500 3.38 3.38 45.45 2.57
8436 14528 7.262944 CTGAACCCAGTAGGATCCATGATCC 62.263 52.000 15.82 14.02 44.80 3.36
8437 14529 3.648067 TGAACCCAGTAGGATCCATGATC 59.352 47.826 15.82 9.10 36.60 2.92
8438 14530 3.649981 CTGAACCCAGTAGGATCCATGAT 59.350 47.826 15.82 0.00 36.60 2.45
8439 14531 3.041211 CTGAACCCAGTAGGATCCATGA 58.959 50.000 15.82 0.00 36.60 3.07
8440 14532 3.482156 CTGAACCCAGTAGGATCCATG 57.518 52.381 15.82 9.50 36.60 3.66
8455 14547 2.351350 CGTTGCCCATTTGGTACTGAAC 60.351 50.000 0.00 0.00 36.04 3.18
8456 14548 1.883275 CGTTGCCCATTTGGTACTGAA 59.117 47.619 0.00 0.00 36.04 3.02
8457 14549 1.529226 CGTTGCCCATTTGGTACTGA 58.471 50.000 0.00 0.00 36.04 3.41
8458 14550 0.525761 CCGTTGCCCATTTGGTACTG 59.474 55.000 0.00 0.00 36.04 2.74
8459 14551 1.248101 GCCGTTGCCCATTTGGTACT 61.248 55.000 0.00 0.00 36.04 2.73
8460 14552 1.214325 GCCGTTGCCCATTTGGTAC 59.786 57.895 0.00 0.00 36.04 3.34
8461 14553 0.827925 TTGCCGTTGCCCATTTGGTA 60.828 50.000 0.00 0.00 36.33 3.25
8462 14554 1.690219 TTTGCCGTTGCCCATTTGGT 61.690 50.000 0.00 0.00 36.33 3.67
8463 14555 1.070445 TTTGCCGTTGCCCATTTGG 59.930 52.632 0.00 0.00 36.33 3.28
8464 14556 1.555741 CGTTTGCCGTTGCCCATTTG 61.556 55.000 0.00 0.00 36.33 2.32
8465 14557 1.300542 CGTTTGCCGTTGCCCATTT 60.301 52.632 0.00 0.00 36.33 2.32
8466 14558 2.338257 CGTTTGCCGTTGCCCATT 59.662 55.556 0.00 0.00 36.33 3.16
8467 14559 4.356442 GCGTTTGCCGTTGCCCAT 62.356 61.111 0.00 0.00 39.32 4.00
8471 14563 4.599434 TCGTGCGTTTGCCGTTGC 62.599 61.111 0.00 0.00 41.78 4.17
8472 14564 2.720750 GTCGTGCGTTTGCCGTTG 60.721 61.111 0.00 0.00 41.78 4.10
8473 14565 3.163110 CTGTCGTGCGTTTGCCGTT 62.163 57.895 0.00 0.00 41.78 4.44
8474 14566 3.636043 CTGTCGTGCGTTTGCCGT 61.636 61.111 0.00 0.00 41.78 5.68
8475 14567 2.876879 TTCTGTCGTGCGTTTGCCG 61.877 57.895 0.00 0.00 41.78 5.69
8476 14568 1.368850 GTTCTGTCGTGCGTTTGCC 60.369 57.895 0.00 0.00 41.78 4.52
8477 14569 0.041312 ATGTTCTGTCGTGCGTTTGC 60.041 50.000 0.00 0.00 43.20 3.68
8478 14570 1.003972 ACATGTTCTGTCGTGCGTTTG 60.004 47.619 0.00 0.00 29.94 2.93
8479 14571 1.295792 ACATGTTCTGTCGTGCGTTT 58.704 45.000 0.00 0.00 29.94 3.60
8480 14572 1.295792 AACATGTTCTGTCGTGCGTT 58.704 45.000 4.92 0.00 36.98 4.84
8481 14573 1.790623 GTAACATGTTCTGTCGTGCGT 59.209 47.619 15.85 0.00 36.98 5.24
8482 14574 1.201661 CGTAACATGTTCTGTCGTGCG 60.202 52.381 15.85 0.49 36.98 5.34
8483 14575 1.126113 CCGTAACATGTTCTGTCGTGC 59.874 52.381 15.85 0.00 36.98 5.34
8484 14576 2.661675 CTCCGTAACATGTTCTGTCGTG 59.338 50.000 15.85 9.85 36.98 4.35
8485 14577 2.925306 GCTCCGTAACATGTTCTGTCGT 60.925 50.000 15.85 0.00 36.98 4.34
8486 14578 1.654105 GCTCCGTAACATGTTCTGTCG 59.346 52.381 15.85 14.73 36.98 4.35
8487 14579 2.924290 GAGCTCCGTAACATGTTCTGTC 59.076 50.000 15.85 3.87 36.98 3.51
8488 14580 2.299013 TGAGCTCCGTAACATGTTCTGT 59.701 45.455 15.85 0.00 40.84 3.41
8489 14581 2.959516 TGAGCTCCGTAACATGTTCTG 58.040 47.619 15.85 8.65 0.00 3.02
8490 14582 3.055819 ACATGAGCTCCGTAACATGTTCT 60.056 43.478 15.85 4.51 46.98 3.01
8491 14583 3.062639 CACATGAGCTCCGTAACATGTTC 59.937 47.826 15.85 6.18 46.98 3.18
8492 14584 3.002791 CACATGAGCTCCGTAACATGTT 58.997 45.455 16.68 16.68 46.98 2.71
8494 14586 2.892374 TCACATGAGCTCCGTAACATG 58.108 47.619 12.15 10.15 43.56 3.21
8495 14587 3.610040 TTCACATGAGCTCCGTAACAT 57.390 42.857 12.15 0.00 0.00 2.71
8496 14588 3.325870 CTTTCACATGAGCTCCGTAACA 58.674 45.455 12.15 0.00 0.00 2.41
8497 14589 2.094417 GCTTTCACATGAGCTCCGTAAC 59.906 50.000 12.15 0.00 36.01 2.50
8498 14590 2.346803 GCTTTCACATGAGCTCCGTAA 58.653 47.619 12.15 0.25 36.01 3.18
8499 14591 1.735700 CGCTTTCACATGAGCTCCGTA 60.736 52.381 12.15 0.00 36.76 4.02
8500 14592 1.016130 CGCTTTCACATGAGCTCCGT 61.016 55.000 12.15 5.59 36.76 4.69
8501 14593 1.699656 CCGCTTTCACATGAGCTCCG 61.700 60.000 12.15 4.86 36.76 4.63
8502 14594 1.372087 CCCGCTTTCACATGAGCTCC 61.372 60.000 12.15 0.00 36.76 4.70
8503 14595 1.986575 GCCCGCTTTCACATGAGCTC 61.987 60.000 6.82 6.82 36.76 4.09
8504 14596 2.042831 GCCCGCTTTCACATGAGCT 61.043 57.895 0.00 0.00 36.76 4.09
8505 14597 2.486966 GCCCGCTTTCACATGAGC 59.513 61.111 0.00 0.00 35.58 4.26
8506 14598 1.243342 TTGGCCCGCTTTCACATGAG 61.243 55.000 0.00 0.00 0.00 2.90
8507 14599 1.228398 TTGGCCCGCTTTCACATGA 60.228 52.632 0.00 0.00 0.00 3.07
8508 14600 1.213537 CTTGGCCCGCTTTCACATG 59.786 57.895 0.00 0.00 0.00 3.21
8509 14601 0.323725 ATCTTGGCCCGCTTTCACAT 60.324 50.000 0.00 0.00 0.00 3.21
8510 14602 0.960364 GATCTTGGCCCGCTTTCACA 60.960 55.000 0.00 0.00 0.00 3.58
8511 14603 1.803289 GATCTTGGCCCGCTTTCAC 59.197 57.895 0.00 0.00 0.00 3.18
8512 14604 1.745115 CGATCTTGGCCCGCTTTCA 60.745 57.895 0.00 0.00 0.00 2.69
8513 14605 2.472909 CCGATCTTGGCCCGCTTTC 61.473 63.158 0.00 0.00 0.00 2.62
8514 14606 2.438434 CCGATCTTGGCCCGCTTT 60.438 61.111 0.00 0.00 0.00 3.51
8515 14607 3.682292 GACCGATCTTGGCCCGCTT 62.682 63.158 0.00 0.00 0.00 4.68
8516 14608 4.162690 GACCGATCTTGGCCCGCT 62.163 66.667 0.00 0.00 0.00 5.52
8518 14610 4.143333 ACGACCGATCTTGGCCCG 62.143 66.667 0.00 0.00 35.38 6.13
8519 14611 2.202892 GACGACCGATCTTGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
8520 14612 2.202892 GGACGACCGATCTTGGCC 60.203 66.667 0.00 0.00 0.00 5.36
8521 14613 2.202892 GGGACGACCGATCTTGGC 60.203 66.667 0.00 0.00 36.97 4.52
8522 14614 1.153628 GTGGGACGACCGATCTTGG 60.154 63.158 0.00 0.00 44.64 3.61
8523 14615 1.516386 CGTGGGACGACCGATCTTG 60.516 63.158 0.00 0.00 46.05 3.02
8524 14616 1.530013 AACGTGGGACGACCGATCTT 61.530 55.000 2.62 0.00 46.05 2.40
8525 14617 1.530013 AAACGTGGGACGACCGATCT 61.530 55.000 2.62 0.00 46.05 2.75
8526 14618 1.074872 GAAACGTGGGACGACCGATC 61.075 60.000 2.62 0.00 46.05 3.69
8527 14619 1.080298 GAAACGTGGGACGACCGAT 60.080 57.895 2.62 0.00 46.05 4.18
8528 14620 2.336088 GAAACGTGGGACGACCGA 59.664 61.111 2.62 0.00 46.05 4.69
8529 14621 2.735857 GGAAACGTGGGACGACCG 60.736 66.667 2.62 0.00 46.05 4.79
8530 14622 1.004200 ATGGAAACGTGGGACGACC 60.004 57.895 2.62 0.00 46.05 4.79
8531 14623 2.159181 CATGGAAACGTGGGACGAC 58.841 57.895 2.62 0.00 46.05 4.34
8532 14624 4.685447 CATGGAAACGTGGGACGA 57.315 55.556 2.62 0.00 46.05 4.20
8556 14648 5.180492 CGAAGCCTGTACTTGTCCATAAAAA 59.820 40.000 0.00 0.00 0.00 1.94
8557 14649 4.693566 CGAAGCCTGTACTTGTCCATAAAA 59.306 41.667 0.00 0.00 0.00 1.52
8558 14650 4.250464 CGAAGCCTGTACTTGTCCATAAA 58.750 43.478 0.00 0.00 0.00 1.40
8559 14651 3.369052 CCGAAGCCTGTACTTGTCCATAA 60.369 47.826 0.00 0.00 0.00 1.90
8560 14652 2.167693 CCGAAGCCTGTACTTGTCCATA 59.832 50.000 0.00 0.00 0.00 2.74
8561 14653 1.066143 CCGAAGCCTGTACTTGTCCAT 60.066 52.381 0.00 0.00 0.00 3.41
8562 14654 0.320374 CCGAAGCCTGTACTTGTCCA 59.680 55.000 0.00 0.00 0.00 4.02
8563 14655 0.606604 TCCGAAGCCTGTACTTGTCC 59.393 55.000 0.00 0.00 0.00 4.02
8564 14656 1.997669 CTCCGAAGCCTGTACTTGTC 58.002 55.000 0.00 0.00 0.00 3.18
8565 14657 0.037232 GCTCCGAAGCCTGTACTTGT 60.037 55.000 0.00 0.00 43.10 3.16
8566 14658 2.755929 GCTCCGAAGCCTGTACTTG 58.244 57.895 0.00 0.00 43.10 3.16
8576 14668 1.009829 GCTGTTGTATGGCTCCGAAG 58.990 55.000 0.00 0.00 0.00 3.79
8577 14669 0.323302 TGCTGTTGTATGGCTCCGAA 59.677 50.000 0.00 0.00 0.00 4.30
8578 14670 0.391130 GTGCTGTTGTATGGCTCCGA 60.391 55.000 0.00 0.00 0.00 4.55
8579 14671 0.673333 TGTGCTGTTGTATGGCTCCG 60.673 55.000 0.00 0.00 0.00 4.63
8580 14672 1.470098 CTTGTGCTGTTGTATGGCTCC 59.530 52.381 0.00 0.00 0.00 4.70
8581 14673 2.095567 CACTTGTGCTGTTGTATGGCTC 60.096 50.000 0.00 0.00 0.00 4.70
8582 14674 1.881973 CACTTGTGCTGTTGTATGGCT 59.118 47.619 0.00 0.00 0.00 4.75
8583 14675 1.608590 ACACTTGTGCTGTTGTATGGC 59.391 47.619 0.10 0.00 0.00 4.40
8584 14676 3.812609 TGTACACTTGTGCTGTTGTATGG 59.187 43.478 0.00 0.00 0.00 2.74
8585 14677 4.749598 TCTGTACACTTGTGCTGTTGTATG 59.250 41.667 0.00 0.00 32.98 2.39
8586 14678 4.956085 TCTGTACACTTGTGCTGTTGTAT 58.044 39.130 0.00 0.00 32.98 2.29
8587 14679 4.098807 TCTCTGTACACTTGTGCTGTTGTA 59.901 41.667 0.00 0.00 32.98 2.41
8588 14680 3.118775 TCTCTGTACACTTGTGCTGTTGT 60.119 43.478 0.00 0.00 32.98 3.32
8589 14681 3.457234 TCTCTGTACACTTGTGCTGTTG 58.543 45.455 0.00 0.00 32.98 3.33
8590 14682 3.819564 TCTCTGTACACTTGTGCTGTT 57.180 42.857 0.00 0.00 32.98 3.16
8591 14683 3.458189 GTTCTCTGTACACTTGTGCTGT 58.542 45.455 0.00 0.00 32.98 4.40
8592 14684 2.802816 GGTTCTCTGTACACTTGTGCTG 59.197 50.000 0.00 0.00 0.00 4.41
8593 14685 2.545952 CGGTTCTCTGTACACTTGTGCT 60.546 50.000 0.00 0.00 0.00 4.40
8594 14686 1.792949 CGGTTCTCTGTACACTTGTGC 59.207 52.381 0.00 0.00 0.00 4.57
8595 14687 1.792949 GCGGTTCTCTGTACACTTGTG 59.207 52.381 0.00 0.00 0.00 3.33
8596 14688 1.270147 GGCGGTTCTCTGTACACTTGT 60.270 52.381 0.00 0.00 0.00 3.16
8597 14689 1.429463 GGCGGTTCTCTGTACACTTG 58.571 55.000 0.00 0.00 0.00 3.16
8598 14690 0.320697 GGGCGGTTCTCTGTACACTT 59.679 55.000 0.00 0.00 0.00 3.16
8599 14691 0.830444 TGGGCGGTTCTCTGTACACT 60.830 55.000 0.00 0.00 0.00 3.55
8600 14692 0.034337 TTGGGCGGTTCTCTGTACAC 59.966 55.000 0.00 0.00 0.00 2.90
8601 14693 0.981183 ATTGGGCGGTTCTCTGTACA 59.019 50.000 0.00 0.00 0.00 2.90
8602 14694 1.338769 ACATTGGGCGGTTCTCTGTAC 60.339 52.381 0.00 0.00 0.00 2.90
8603 14695 0.981183 ACATTGGGCGGTTCTCTGTA 59.019 50.000 0.00 0.00 0.00 2.74
8604 14696 0.606401 CACATTGGGCGGTTCTCTGT 60.606 55.000 0.00 0.00 0.00 3.41
8605 14697 1.926511 GCACATTGGGCGGTTCTCTG 61.927 60.000 0.00 0.00 0.00 3.35
8606 14698 1.675641 GCACATTGGGCGGTTCTCT 60.676 57.895 0.00 0.00 0.00 3.10
8607 14699 2.877691 GCACATTGGGCGGTTCTC 59.122 61.111 0.00 0.00 0.00 2.87
8614 14706 1.137404 GATGACACGCACATTGGGC 59.863 57.895 0.00 0.00 33.10 5.36
8615 14707 1.131126 GAAGATGACACGCACATTGGG 59.869 52.381 0.00 0.00 36.28 4.12
8616 14708 2.079158 AGAAGATGACACGCACATTGG 58.921 47.619 0.00 0.00 0.00 3.16
8617 14709 2.094894 GGAGAAGATGACACGCACATTG 59.905 50.000 0.00 0.00 0.00 2.82
8618 14710 2.350522 GGAGAAGATGACACGCACATT 58.649 47.619 0.00 0.00 0.00 2.71
8619 14711 1.406069 GGGAGAAGATGACACGCACAT 60.406 52.381 0.00 0.00 0.00 3.21
8620 14712 0.037326 GGGAGAAGATGACACGCACA 60.037 55.000 0.00 0.00 0.00 4.57
8621 14713 1.078759 CGGGAGAAGATGACACGCAC 61.079 60.000 0.00 0.00 0.00 5.34
8622 14714 1.215382 CGGGAGAAGATGACACGCA 59.785 57.895 0.00 0.00 0.00 5.24
8623 14715 1.519455 CCGGGAGAAGATGACACGC 60.519 63.158 0.00 0.00 0.00 5.34
8624 14716 0.530744 TTCCGGGAGAAGATGACACG 59.469 55.000 0.00 0.00 0.00 4.49
8633 14725 3.073356 ACCAAACAATACTTCCGGGAGAA 59.927 43.478 19.39 0.00 0.00 2.87
8634 14726 2.640826 ACCAAACAATACTTCCGGGAGA 59.359 45.455 19.39 0.00 0.00 3.71
8635 14727 3.067684 ACCAAACAATACTTCCGGGAG 57.932 47.619 8.71 8.71 0.00 4.30
8636 14728 3.150767 CAACCAAACAATACTTCCGGGA 58.849 45.455 0.00 0.00 0.00 5.14
8637 14729 2.230266 CCAACCAAACAATACTTCCGGG 59.770 50.000 0.00 0.00 0.00 5.73
8638 14730 2.352323 GCCAACCAAACAATACTTCCGG 60.352 50.000 0.00 0.00 0.00 5.14
8639 14731 2.294791 TGCCAACCAAACAATACTTCCG 59.705 45.455 0.00 0.00 0.00 4.30
8640 14732 4.329462 TTGCCAACCAAACAATACTTCC 57.671 40.909 0.00 0.00 0.00 3.46
8641 14733 5.596845 TCTTTGCCAACCAAACAATACTTC 58.403 37.500 0.00 0.00 38.46 3.01
8642 14734 5.606348 TCTTTGCCAACCAAACAATACTT 57.394 34.783 0.00 0.00 38.46 2.24
8643 14735 5.806654 ATCTTTGCCAACCAAACAATACT 57.193 34.783 0.00 0.00 38.46 2.12
8644 14736 5.571357 CGTATCTTTGCCAACCAAACAATAC 59.429 40.000 0.00 0.00 38.46 1.89
8645 14737 5.241949 ACGTATCTTTGCCAACCAAACAATA 59.758 36.000 0.00 0.00 38.46 1.90
8646 14738 4.038642 ACGTATCTTTGCCAACCAAACAAT 59.961 37.500 0.00 0.00 38.46 2.71
8647 14739 3.381908 ACGTATCTTTGCCAACCAAACAA 59.618 39.130 0.00 0.00 38.46 2.83
8648 14740 2.952978 ACGTATCTTTGCCAACCAAACA 59.047 40.909 0.00 0.00 38.46 2.83
8649 14741 3.636282 ACGTATCTTTGCCAACCAAAC 57.364 42.857 0.00 0.00 38.46 2.93
8650 14742 4.135306 TGTACGTATCTTTGCCAACCAAA 58.865 39.130 0.00 0.00 40.97 3.28
8651 14743 3.741249 TGTACGTATCTTTGCCAACCAA 58.259 40.909 0.00 0.00 0.00 3.67
8652 14744 3.331150 CTGTACGTATCTTTGCCAACCA 58.669 45.455 0.00 0.00 0.00 3.67
8653 14745 2.095372 GCTGTACGTATCTTTGCCAACC 59.905 50.000 0.00 0.00 0.00 3.77
8654 14746 2.739913 TGCTGTACGTATCTTTGCCAAC 59.260 45.455 0.00 0.00 0.00 3.77
8655 14747 3.046968 TGCTGTACGTATCTTTGCCAA 57.953 42.857 0.00 0.00 0.00 4.52
8656 14748 2.753055 TGCTGTACGTATCTTTGCCA 57.247 45.000 0.00 0.00 0.00 4.92
8657 14749 4.413495 TTTTGCTGTACGTATCTTTGCC 57.587 40.909 0.00 0.00 0.00 4.52
8658 14750 4.723862 CGATTTTGCTGTACGTATCTTTGC 59.276 41.667 0.00 0.18 0.00 3.68
8659 14751 6.089920 TCGATTTTGCTGTACGTATCTTTG 57.910 37.500 0.00 0.00 0.00 2.77
8660 14752 6.367969 AGTTCGATTTTGCTGTACGTATCTTT 59.632 34.615 0.00 0.00 0.00 2.52
8661 14753 5.867716 AGTTCGATTTTGCTGTACGTATCTT 59.132 36.000 0.00 0.00 0.00 2.40
8662 14754 5.408356 AGTTCGATTTTGCTGTACGTATCT 58.592 37.500 0.00 0.00 0.00 1.98
8663 14755 5.287752 TGAGTTCGATTTTGCTGTACGTATC 59.712 40.000 0.00 0.00 0.00 2.24
8664 14756 5.061808 GTGAGTTCGATTTTGCTGTACGTAT 59.938 40.000 0.00 0.00 0.00 3.06
8665 14757 4.383649 GTGAGTTCGATTTTGCTGTACGTA 59.616 41.667 0.00 0.00 0.00 3.57
8666 14758 3.183775 GTGAGTTCGATTTTGCTGTACGT 59.816 43.478 0.00 0.00 0.00 3.57
8667 14759 3.183574 TGTGAGTTCGATTTTGCTGTACG 59.816 43.478 0.00 0.00 0.00 3.67
8668 14760 4.725556 TGTGAGTTCGATTTTGCTGTAC 57.274 40.909 0.00 0.00 0.00 2.90
8669 14761 5.743026 TTTGTGAGTTCGATTTTGCTGTA 57.257 34.783 0.00 0.00 0.00 2.74
8670 14762 4.630894 TTTGTGAGTTCGATTTTGCTGT 57.369 36.364 0.00 0.00 0.00 4.40
8671 14763 4.383649 CCATTTGTGAGTTCGATTTTGCTG 59.616 41.667 0.00 0.00 0.00 4.41
8672 14764 4.549458 CCATTTGTGAGTTCGATTTTGCT 58.451 39.130 0.00 0.00 0.00 3.91
8673 14765 3.674753 CCCATTTGTGAGTTCGATTTTGC 59.325 43.478 0.00 0.00 0.00 3.68
8674 14766 3.674753 GCCCATTTGTGAGTTCGATTTTG 59.325 43.478 0.00 0.00 0.00 2.44
8675 14767 3.320541 TGCCCATTTGTGAGTTCGATTTT 59.679 39.130 0.00 0.00 0.00 1.82
8676 14768 2.890311 TGCCCATTTGTGAGTTCGATTT 59.110 40.909 0.00 0.00 0.00 2.17
8677 14769 2.513753 TGCCCATTTGTGAGTTCGATT 58.486 42.857 0.00 0.00 0.00 3.34
8678 14770 2.198827 TGCCCATTTGTGAGTTCGAT 57.801 45.000 0.00 0.00 0.00 3.59
8679 14771 1.606668 GTTGCCCATTTGTGAGTTCGA 59.393 47.619 0.00 0.00 0.00 3.71
8680 14772 1.335872 GGTTGCCCATTTGTGAGTTCG 60.336 52.381 0.00 0.00 0.00 3.95
8681 14773 1.686052 TGGTTGCCCATTTGTGAGTTC 59.314 47.619 0.00 0.00 35.17 3.01
8682 14774 1.786937 TGGTTGCCCATTTGTGAGTT 58.213 45.000 0.00 0.00 35.17 3.01
8683 14775 1.688197 CTTGGTTGCCCATTTGTGAGT 59.312 47.619 0.00 0.00 41.49 3.41
8684 14776 1.688197 ACTTGGTTGCCCATTTGTGAG 59.312 47.619 0.00 0.00 41.49 3.51
8685 14777 1.411977 CACTTGGTTGCCCATTTGTGA 59.588 47.619 0.00 0.00 41.49 3.58
8686 14778 1.411977 TCACTTGGTTGCCCATTTGTG 59.588 47.619 0.00 0.00 41.49 3.33
8687 14779 1.412343 GTCACTTGGTTGCCCATTTGT 59.588 47.619 0.00 0.00 41.49 2.83
8688 14780 1.411977 TGTCACTTGGTTGCCCATTTG 59.588 47.619 0.00 0.00 41.49 2.32
8689 14781 1.786937 TGTCACTTGGTTGCCCATTT 58.213 45.000 0.00 0.00 41.49 2.32
8690 14782 1.412343 GTTGTCACTTGGTTGCCCATT 59.588 47.619 0.00 0.00 41.49 3.16
8691 14783 1.039856 GTTGTCACTTGGTTGCCCAT 58.960 50.000 0.00 0.00 41.49 4.00
8692 14784 1.380403 CGTTGTCACTTGGTTGCCCA 61.380 55.000 0.00 0.00 39.65 5.36
8693 14785 1.098712 TCGTTGTCACTTGGTTGCCC 61.099 55.000 0.00 0.00 0.00 5.36
8694 14786 0.736053 TTCGTTGTCACTTGGTTGCC 59.264 50.000 0.00 0.00 0.00 4.52
8695 14787 2.159435 ACTTTCGTTGTCACTTGGTTGC 60.159 45.455 0.00 0.00 0.00 4.17
8696 14788 3.757745 ACTTTCGTTGTCACTTGGTTG 57.242 42.857 0.00 0.00 0.00 3.77
8697 14789 4.255301 TGTACTTTCGTTGTCACTTGGTT 58.745 39.130 0.00 0.00 0.00 3.67
8698 14790 3.864243 TGTACTTTCGTTGTCACTTGGT 58.136 40.909 0.00 0.00 0.00 3.67
8699 14791 4.868450 TTGTACTTTCGTTGTCACTTGG 57.132 40.909 0.00 0.00 0.00 3.61
8700 14792 5.025826 GGTTTGTACTTTCGTTGTCACTTG 58.974 41.667 0.00 0.00 0.00 3.16
8701 14793 4.696402 TGGTTTGTACTTTCGTTGTCACTT 59.304 37.500 0.00 0.00 0.00 3.16
8702 14794 4.255301 TGGTTTGTACTTTCGTTGTCACT 58.745 39.130 0.00 0.00 0.00 3.41
8703 14795 4.603231 TGGTTTGTACTTTCGTTGTCAC 57.397 40.909 0.00 0.00 0.00 3.67
8704 14796 4.696402 ACTTGGTTTGTACTTTCGTTGTCA 59.304 37.500 0.00 0.00 0.00 3.58
8705 14797 5.225899 ACTTGGTTTGTACTTTCGTTGTC 57.774 39.130 0.00 0.00 0.00 3.18
8706 14798 5.876460 ACTACTTGGTTTGTACTTTCGTTGT 59.124 36.000 0.00 0.00 0.00 3.32
8707 14799 6.354039 ACTACTTGGTTTGTACTTTCGTTG 57.646 37.500 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.