Multiple sequence alignment - TraesCS4B01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G353600 chr4B 100.000 5591 0 0 888 6478 645304922 645299332 0.000000e+00 10325
1 TraesCS4B01G353600 chr4B 100.000 602 0 0 1 602 645305809 645305208 0.000000e+00 1112
2 TraesCS4B01G353600 chr4B 82.860 1126 120 36 2182 3266 645302537 645301444 0.000000e+00 942
3 TraesCS4B01G353600 chr4B 82.860 1126 120 36 3273 4366 645303628 645302544 0.000000e+00 942
4 TraesCS4B01G353600 chr4D 95.604 3981 104 25 1932 5869 501324002 501320050 0.000000e+00 6316
5 TraesCS4B01G353600 chr4D 85.013 1141 112 29 2158 3266 501322655 501321542 0.000000e+00 1105
6 TraesCS4B01G353600 chr4D 83.885 1117 127 24 3273 4360 501323755 501322663 0.000000e+00 1016
7 TraesCS4B01G353600 chr4D 89.693 553 35 9 1371 1915 501325180 501324642 0.000000e+00 686
8 TraesCS4B01G353600 chr4D 86.783 401 39 6 1932 2324 501324540 501324146 9.980000e-118 435
9 TraesCS4B01G353600 chr4D 86.520 408 12 26 932 1326 501325645 501325268 6.050000e-110 409
10 TraesCS4B01G353600 chr4D 91.393 244 16 5 1 241 501326661 501326420 4.840000e-86 329
11 TraesCS4B01G353600 chr4D 88.583 254 17 5 6048 6290 501319681 501319429 1.370000e-76 298
12 TraesCS4B01G353600 chr4D 81.250 304 30 13 264 544 501326427 501326128 3.040000e-53 220
13 TraesCS4B01G353600 chr4D 88.889 126 1 3 6365 6478 501319305 501319181 6.770000e-30 143
14 TraesCS4B01G353600 chr4D 91.667 72 4 2 6298 6368 501319446 501319376 1.490000e-16 99
15 TraesCS4B01G353600 chr5A 90.993 3464 179 62 2392 5775 682928720 682932130 0.000000e+00 4545
16 TraesCS4B01G353600 chr5A 85.466 1149 119 22 2156 3266 682929598 682930736 0.000000e+00 1153
17 TraesCS4B01G353600 chr5A 87.942 904 60 23 1059 1935 682927197 682928078 0.000000e+00 1020
18 TraesCS4B01G353600 chr5A 85.237 779 51 19 1190 1928 608640863 608640109 0.000000e+00 743
19 TraesCS4B01G353600 chr5A 83.333 678 83 16 3699 4360 682928929 682929592 3.340000e-167 599
20 TraesCS4B01G353600 chr5A 84.071 565 48 22 1 528 682926062 682926621 2.080000e-139 507
21 TraesCS4B01G353600 chr5A 92.653 245 16 2 6034 6277 682932386 682932629 1.030000e-92 351
22 TraesCS4B01G353600 chr5A 93.377 151 10 0 5773 5923 682932218 682932368 2.350000e-54 224
23 TraesCS4B01G353600 chr5A 100.000 53 0 0 6314 6366 682932628 682932680 1.490000e-16 99
24 TraesCS4B01G353600 chr7A 84.005 769 63 24 1196 1928 45330432 45329688 0.000000e+00 684
25 TraesCS4B01G353600 chr7A 83.933 778 60 20 1192 1928 622259892 622259139 0.000000e+00 684
26 TraesCS4B01G353600 chr7A 89.655 87 9 0 2309 2395 45327880 45327794 1.910000e-20 111
27 TraesCS4B01G353600 chr2A 82.886 783 66 22 1190 1928 594174289 594175047 5.480000e-180 641
28 TraesCS4B01G353600 chr2A 89.011 91 10 0 2306 2396 594175388 594175478 5.310000e-21 113
29 TraesCS4B01G353600 chr6A 87.361 538 37 11 1397 1928 137905908 137906420 7.240000e-164 588
30 TraesCS4B01G353600 chr6A 94.211 190 11 0 1129 1318 48104043 48104232 2.280000e-74 291
31 TraesCS4B01G353600 chr6B 94.444 198 10 1 1122 1318 84611202 84611399 2.930000e-78 303
32 TraesCS4B01G353600 chrUn 93.035 201 13 1 1122 1321 153369061 153368861 6.350000e-75 292


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G353600 chr4B 645299332 645305809 6477 True 3330.250000 10325 91.430000 1 6478 4 chr4B.!!$R1 6477
1 TraesCS4B01G353600 chr4D 501319181 501326661 7480 True 1005.090909 6316 88.116364 1 6478 11 chr4D.!!$R1 6477
2 TraesCS4B01G353600 chr5A 682926062 682932680 6618 False 1062.250000 4545 89.729375 1 6366 8 chr5A.!!$F1 6365
3 TraesCS4B01G353600 chr5A 608640109 608640863 754 True 743.000000 743 85.237000 1190 1928 1 chr5A.!!$R1 738
4 TraesCS4B01G353600 chr7A 622259139 622259892 753 True 684.000000 684 83.933000 1192 1928 1 chr7A.!!$R1 736
5 TraesCS4B01G353600 chr7A 45327794 45330432 2638 True 397.500000 684 86.830000 1196 2395 2 chr7A.!!$R2 1199
6 TraesCS4B01G353600 chr2A 594174289 594175478 1189 False 377.000000 641 85.948500 1190 2396 2 chr2A.!!$F1 1206
7 TraesCS4B01G353600 chr6A 137905908 137906420 512 False 588.000000 588 87.361000 1397 1928 1 chr6A.!!$F2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 70 0.311790 ATGCACAAAACAGCCTCACG 59.688 50.000 0.00 0.00 0.00 4.35 F
285 290 0.388649 AACGACATCACGGCTCAGAC 60.389 55.000 0.00 0.00 37.61 3.51 F
1818 2040 0.389296 TGCGTATGACCGTGACTTGG 60.389 55.000 0.00 0.00 0.00 3.61 F
1918 2152 0.036010 CTTGGTAGTGCTGGGAGTGG 60.036 60.000 0.00 0.00 0.00 4.00 F
2700 5281 0.318120 CTGGCACACAAATGGAACCC 59.682 55.000 0.00 0.00 0.00 4.11 F
4063 6710 0.322648 CTGACAGCCATGGTCTGTGA 59.677 55.000 32.83 26.77 44.09 3.58 F
5162 7814 1.196127 GACCACCGCTTAAACTTTCCG 59.804 52.381 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1690 0.035820 TAAAAGCGAAGGCCATCCGT 60.036 50.000 5.01 0.0 41.24 4.69 R
1901 2128 0.115547 TACCACTCCCAGCACTACCA 59.884 55.000 0.00 0.0 0.00 3.25 R
2669 5250 0.320050 TGTGCCAGCTATCGTGTTCA 59.680 50.000 0.00 0.0 0.00 3.18 R
3529 6166 0.865769 AACGGTGAAGACGATGCAAC 59.134 50.000 0.00 0.0 34.93 4.17 R
4638 7286 0.250513 AGATCGCCCAGGACAGTTTC 59.749 55.000 0.00 0.0 0.00 2.78 R
5284 7936 0.251634 GAGAGAAGGTCCAGGCCAAG 59.748 60.000 5.01 0.0 0.00 3.61 R
6309 9251 1.818060 CCGTGGGATTCTCAAAATGCA 59.182 47.619 0.00 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 5.871465 ACAATACGACATAACAATGCACA 57.129 34.783 0.00 0.00 0.00 4.57
66 68 1.755959 ACAATGCACAAAACAGCCTCA 59.244 42.857 0.00 0.00 0.00 3.86
68 70 0.311790 ATGCACAAAACAGCCTCACG 59.688 50.000 0.00 0.00 0.00 4.35
75 77 2.113243 AAACAGCCTCACGAGACCCC 62.113 60.000 0.00 0.00 0.00 4.95
78 80 2.997897 GCCTCACGAGACCCCACT 60.998 66.667 0.00 0.00 0.00 4.00
89 91 0.535553 GACCCCACTAAAACCACGCA 60.536 55.000 0.00 0.00 0.00 5.24
153 155 1.333619 ACAAGTTCAACACGCCATGAC 59.666 47.619 0.00 0.00 0.00 3.06
183 185 4.807834 AGCAAGAAGACGTGACATATCATG 59.192 41.667 0.00 0.00 45.92 3.07
208 212 3.008835 ACAATGCAGATGGTAGCACAT 57.991 42.857 0.00 0.00 44.49 3.21
209 213 4.155063 ACAATGCAGATGGTAGCACATA 57.845 40.909 0.00 0.00 44.49 2.29
241 245 5.008217 CCAGGAGACGATAAACAACAACAAA 59.992 40.000 0.00 0.00 0.00 2.83
285 290 0.388649 AACGACATCACGGCTCAGAC 60.389 55.000 0.00 0.00 37.61 3.51
359 365 2.038295 GCCTCACTAGATCCATCCCAAG 59.962 54.545 0.00 0.00 0.00 3.61
360 366 3.581101 CCTCACTAGATCCATCCCAAGA 58.419 50.000 0.00 0.00 0.00 3.02
361 367 3.969976 CCTCACTAGATCCATCCCAAGAA 59.030 47.826 0.00 0.00 0.00 2.52
364 370 6.387192 TCACTAGATCCATCCCAAGAAAAA 57.613 37.500 0.00 0.00 0.00 1.94
365 371 6.418101 TCACTAGATCCATCCCAAGAAAAAG 58.582 40.000 0.00 0.00 0.00 2.27
372 399 3.007940 CCATCCCAAGAAAAAGAAACCCC 59.992 47.826 0.00 0.00 0.00 4.95
373 400 2.684943 TCCCAAGAAAAAGAAACCCCC 58.315 47.619 0.00 0.00 0.00 5.40
423 453 1.368579 CACCAAAAGCCAGCCAAGG 59.631 57.895 0.00 0.00 0.00 3.61
424 454 1.114722 CACCAAAAGCCAGCCAAGGA 61.115 55.000 0.00 0.00 0.00 3.36
426 456 1.538687 CCAAAAGCCAGCCAAGGAGG 61.539 60.000 0.00 0.00 41.84 4.30
428 458 1.729267 AAAAGCCAGCCAAGGAGGGA 61.729 55.000 1.20 0.00 38.09 4.20
518 557 3.003173 CGAGGAGGACCAGCCCAA 61.003 66.667 0.00 0.00 38.94 4.12
909 948 3.917760 CCGCTCCTCCCCGTGATC 61.918 72.222 0.00 0.00 0.00 2.92
910 949 3.917760 CGCTCCTCCCCGTGATCC 61.918 72.222 0.00 0.00 0.00 3.36
911 950 3.551407 GCTCCTCCCCGTGATCCC 61.551 72.222 0.00 0.00 0.00 3.85
912 951 2.844839 CTCCTCCCCGTGATCCCC 60.845 72.222 0.00 0.00 0.00 4.81
913 952 3.364964 TCCTCCCCGTGATCCCCT 61.365 66.667 0.00 0.00 0.00 4.79
914 953 2.844839 CCTCCCCGTGATCCCCTC 60.845 72.222 0.00 0.00 0.00 4.30
915 954 2.844839 CTCCCCGTGATCCCCTCC 60.845 72.222 0.00 0.00 0.00 4.30
916 955 4.492303 TCCCCGTGATCCCCTCCC 62.492 72.222 0.00 0.00 0.00 4.30
922 961 4.431524 TGATCCCCTCCCCCGCTT 62.432 66.667 0.00 0.00 0.00 4.68
923 962 3.561241 GATCCCCTCCCCCGCTTC 61.561 72.222 0.00 0.00 0.00 3.86
957 1091 2.107141 CCGCCTCCTCGTCCATTC 59.893 66.667 0.00 0.00 0.00 2.67
1087 1235 1.208103 GCTCGTCCGATCCGATCTC 59.792 63.158 6.81 0.00 33.27 2.75
1093 1241 2.117910 GTCCGATCCGATCTCGTTTTC 58.882 52.381 6.81 0.00 37.74 2.29
1100 1248 3.834610 TCCGATCTCGTTTTCTGTTCTC 58.165 45.455 0.00 0.00 37.74 2.87
1111 1259 5.554696 CGTTTTCTGTTCTCGTCTTCTCAAC 60.555 44.000 0.00 0.00 0.00 3.18
1194 1351 3.324108 TGTACAAGGCCCGGGACC 61.324 66.667 27.30 24.26 0.00 4.46
1334 1519 2.475519 CGTCAAGTGCGTCTGTTTGTTT 60.476 45.455 0.00 0.00 0.00 2.83
1347 1539 6.014898 GTCTGTTTGTTTGTTGTTTGCATTC 58.985 36.000 0.00 0.00 0.00 2.67
1350 1542 5.468072 TGTTTGTTTGTTGTTTGCATTCACT 59.532 32.000 0.00 0.00 0.00 3.41
1351 1543 5.776519 TTGTTTGTTGTTTGCATTCACTC 57.223 34.783 0.00 0.00 0.00 3.51
1357 1549 3.988379 TGTTTGCATTCACTCTGTTCC 57.012 42.857 0.00 0.00 0.00 3.62
1376 1569 2.897969 TCCTACCTGCTCCGGATTTATC 59.102 50.000 3.57 0.00 0.00 1.75
1383 1584 4.223923 CCTGCTCCGGATTTATCTAGGATT 59.776 45.833 3.57 0.00 34.78 3.01
1384 1585 5.280215 CCTGCTCCGGATTTATCTAGGATTT 60.280 44.000 3.57 0.00 34.78 2.17
1427 1628 3.873952 AGCTCGGATTAACTGCTTGATTC 59.126 43.478 0.00 0.00 0.00 2.52
1475 1686 3.993081 GGCATTAAGTCGAGATGGAGATG 59.007 47.826 0.00 0.00 0.00 2.90
1476 1687 3.993081 GCATTAAGTCGAGATGGAGATGG 59.007 47.826 0.00 0.00 0.00 3.51
1477 1688 4.564041 CATTAAGTCGAGATGGAGATGGG 58.436 47.826 0.00 0.00 0.00 4.00
1478 1689 1.418334 AAGTCGAGATGGAGATGGGG 58.582 55.000 0.00 0.00 0.00 4.96
1479 1690 0.558220 AGTCGAGATGGAGATGGGGA 59.442 55.000 0.00 0.00 0.00 4.81
1480 1691 0.676736 GTCGAGATGGAGATGGGGAC 59.323 60.000 0.00 0.00 0.00 4.46
1554 1772 3.981071 TGAAATGTGCTAGTACTGCCT 57.019 42.857 12.42 0.00 0.00 4.75
1605 1827 9.584008 TCTATTTATAGGGTGAGTGTTAGTAGG 57.416 37.037 0.00 0.00 0.00 3.18
1610 1832 3.076484 AGGGTGAGTGTTAGTAGGTGGTA 59.924 47.826 0.00 0.00 0.00 3.25
1634 1856 2.526304 TTGTTGCTACGCTGAGAAGT 57.474 45.000 0.00 0.00 0.00 3.01
1640 1862 1.801178 GCTACGCTGAGAAGTTTTGCT 59.199 47.619 0.00 0.00 0.00 3.91
1641 1863 2.993899 GCTACGCTGAGAAGTTTTGCTA 59.006 45.455 0.00 0.00 0.00 3.49
1646 1868 4.515191 ACGCTGAGAAGTTTTGCTAATTCA 59.485 37.500 0.00 0.00 0.00 2.57
1818 2040 0.389296 TGCGTATGACCGTGACTTGG 60.389 55.000 0.00 0.00 0.00 3.61
1853 2075 7.513371 TTCCGTATTTAGTTGGTTGAACATT 57.487 32.000 0.00 0.00 36.98 2.71
1855 2077 7.364200 TCCGTATTTAGTTGGTTGAACATTTG 58.636 34.615 0.00 0.00 36.98 2.32
1861 2083 7.820044 TTAGTTGGTTGAACATTTGTTTGTC 57.180 32.000 0.00 0.00 38.56 3.18
1871 2093 6.308282 TGAACATTTGTTTGTCCGTTTGTTAC 59.692 34.615 0.00 0.00 38.56 2.50
1877 2099 4.025563 TGTTTGTCCGTTTGTTACTGATCG 60.026 41.667 0.00 0.00 0.00 3.69
1891 2113 9.981114 TTGTTACTGATCGATGATTATGTATGT 57.019 29.630 0.54 0.00 0.00 2.29
1918 2152 0.036010 CTTGGTAGTGCTGGGAGTGG 60.036 60.000 0.00 0.00 0.00 4.00
1928 2162 3.055385 GTGCTGGGAGTGGTAGAACAATA 60.055 47.826 0.00 0.00 0.00 1.90
1929 2163 3.585289 TGCTGGGAGTGGTAGAACAATAA 59.415 43.478 0.00 0.00 0.00 1.40
1970 2359 9.647797 TTCGTGTAAAAGAATTATTAGCTCTCA 57.352 29.630 0.00 0.00 0.00 3.27
2031 2958 2.653726 CACATTATGCCTTGTGCCCTA 58.346 47.619 0.00 0.00 40.16 3.53
2032 2959 3.225104 CACATTATGCCTTGTGCCCTAT 58.775 45.455 0.00 0.00 40.16 2.57
2043 2970 4.202461 CCTTGTGCCCTATGTATATGGTGT 60.202 45.833 0.00 0.00 0.00 4.16
2089 3016 4.941263 TGTGTTTTATATGGCAGGACAGTC 59.059 41.667 0.00 0.00 0.00 3.51
2130 4131 1.609841 GGCCACACTTAGCGTAAACCT 60.610 52.381 0.00 0.00 0.00 3.50
2152 4153 0.681175 ATGCACAGTTGGGGAAAAGC 59.319 50.000 0.00 0.00 0.00 3.51
2167 4168 3.003793 GGAAAAGCAACCTTGTCTGTCTC 59.996 47.826 0.00 0.00 35.90 3.36
2208 4607 7.595875 TCATTGTTGAACTTATTGCAGTGAATG 59.404 33.333 0.00 0.00 0.00 2.67
2211 4610 5.627499 TGAACTTATTGCAGTGAATGTCC 57.373 39.130 0.00 0.00 0.00 4.02
2257 4656 7.858879 CACATGTGATGTTTGGACATATATGTG 59.141 37.037 22.93 18.19 46.27 3.21
2341 4740 5.121454 GTCTTGAACTAGCTGAATTCCTGTG 59.879 44.000 2.27 0.00 0.00 3.66
2609 5184 0.608856 TTAGTGCATGGCTGTGGGTG 60.609 55.000 0.00 0.00 0.00 4.61
2692 5273 1.155889 CACGATAGCTGGCACACAAA 58.844 50.000 0.00 0.00 42.67 2.83
2693 5274 1.739466 CACGATAGCTGGCACACAAAT 59.261 47.619 0.00 0.00 42.67 2.32
2695 5276 1.064505 CGATAGCTGGCACACAAATGG 59.935 52.381 0.00 0.00 0.00 3.16
2696 5277 2.368439 GATAGCTGGCACACAAATGGA 58.632 47.619 0.00 0.00 0.00 3.41
2697 5278 2.284754 TAGCTGGCACACAAATGGAA 57.715 45.000 0.00 0.00 0.00 3.53
2700 5281 0.318120 CTGGCACACAAATGGAACCC 59.682 55.000 0.00 0.00 0.00 4.11
2701 5282 0.397675 TGGCACACAAATGGAACCCA 60.398 50.000 0.00 0.00 38.19 4.51
2740 5323 4.808895 TGTACTGTACAACACTCTTTGCTG 59.191 41.667 17.74 0.00 35.38 4.41
3031 5614 9.905713 TGTTTTCTGATTAGTATTGCCTATTCT 57.094 29.630 0.00 0.00 0.00 2.40
3536 6173 9.071221 TGTAATCGTTTCAATATTTGTTGCATC 57.929 29.630 0.00 0.00 0.00 3.91
3797 6437 0.968405 CAGCAGAGCCTATCTCCTCC 59.032 60.000 0.00 0.00 42.90 4.30
3798 6438 0.859760 AGCAGAGCCTATCTCCTCCT 59.140 55.000 0.00 0.00 42.90 3.69
3799 6439 1.203050 AGCAGAGCCTATCTCCTCCTC 60.203 57.143 0.00 0.00 42.90 3.71
3861 6505 6.620678 TCCTGCAAGCTGTAAATAAAACATC 58.379 36.000 0.00 0.00 0.00 3.06
3862 6506 6.208402 TCCTGCAAGCTGTAAATAAAACATCA 59.792 34.615 0.00 0.00 0.00 3.07
3864 6508 6.155827 TGCAAGCTGTAAATAAAACATCACC 58.844 36.000 0.00 0.00 0.00 4.02
3865 6509 5.576774 GCAAGCTGTAAATAAAACATCACCC 59.423 40.000 0.00 0.00 0.00 4.61
3868 6512 6.924111 AGCTGTAAATAAAACATCACCCAAG 58.076 36.000 0.00 0.00 0.00 3.61
3869 6513 5.576774 GCTGTAAATAAAACATCACCCAAGC 59.423 40.000 0.00 0.00 0.00 4.01
3870 6514 6.572314 GCTGTAAATAAAACATCACCCAAGCT 60.572 38.462 0.00 0.00 0.00 3.74
3871 6515 7.362574 GCTGTAAATAAAACATCACCCAAGCTA 60.363 37.037 0.00 0.00 0.00 3.32
3872 6516 7.822658 TGTAAATAAAACATCACCCAAGCTAC 58.177 34.615 0.00 0.00 0.00 3.58
3873 6517 6.909550 AAATAAAACATCACCCAAGCTACA 57.090 33.333 0.00 0.00 0.00 2.74
3874 6518 6.909550 AATAAAACATCACCCAAGCTACAA 57.090 33.333 0.00 0.00 0.00 2.41
3875 6519 4.584327 AAAACATCACCCAAGCTACAAC 57.416 40.909 0.00 0.00 0.00 3.32
3876 6520 2.949177 ACATCACCCAAGCTACAACA 57.051 45.000 0.00 0.00 0.00 3.33
3877 6521 2.504367 ACATCACCCAAGCTACAACAC 58.496 47.619 0.00 0.00 0.00 3.32
3878 6522 2.106511 ACATCACCCAAGCTACAACACT 59.893 45.455 0.00 0.00 0.00 3.55
3879 6523 2.543777 TCACCCAAGCTACAACACTC 57.456 50.000 0.00 0.00 0.00 3.51
3950 6597 0.548031 ATCACCCCAGCACTGTATGG 59.452 55.000 4.62 4.62 36.27 2.74
3965 6612 1.143684 GTATGGTCTCCATGTGGGCAT 59.856 52.381 11.04 0.00 44.84 4.40
3979 6626 1.826096 TGGGCATCATTTGTGTCATGG 59.174 47.619 0.00 0.00 0.00 3.66
3995 6642 2.358582 TCATGGTTGCTGTCTTTGTGTG 59.641 45.455 0.00 0.00 0.00 3.82
4063 6710 0.322648 CTGACAGCCATGGTCTGTGA 59.677 55.000 32.83 26.77 44.09 3.58
4168 6815 6.040391 TGCAGGTAATGTTAAGAGTTTGCTTT 59.960 34.615 0.00 0.00 0.00 3.51
4203 6850 6.804677 TGTTGCAACACATTTTAGATCAACT 58.195 32.000 27.96 0.00 33.17 3.16
4204 6851 7.935520 TGTTGCAACACATTTTAGATCAACTA 58.064 30.769 27.96 0.00 33.17 2.24
4238 6885 5.630680 GGTAAACATCAAGTTCATGCAACAG 59.369 40.000 0.00 0.00 40.26 3.16
4386 7034 4.523943 TGCATTAACTTCTGGTTGCATCTT 59.476 37.500 0.00 0.00 35.19 2.40
4387 7035 4.860907 GCATTAACTTCTGGTTGCATCTTG 59.139 41.667 0.00 0.00 38.75 3.02
4388 7036 5.404946 CATTAACTTCTGGTTGCATCTTGG 58.595 41.667 0.00 0.00 38.75 3.61
4692 7340 8.693542 ATTTGTTGATGCTATTTTGCTCTTAC 57.306 30.769 0.00 0.00 0.00 2.34
4755 7406 2.849942 TCTATCCAATTCCATGCCACG 58.150 47.619 0.00 0.00 0.00 4.94
4999 7651 7.088627 CTCATCTTCTGAGTGCACTTCTTGC 62.089 48.000 22.65 8.26 46.16 4.01
5160 7812 2.157085 CGAGACCACCGCTTAAACTTTC 59.843 50.000 0.00 0.00 0.00 2.62
5162 7814 1.196127 GACCACCGCTTAAACTTTCCG 59.804 52.381 0.00 0.00 0.00 4.30
5191 7843 4.269123 CGCTCATGGCAAGTACGTTTATAA 59.731 41.667 0.00 0.00 41.91 0.98
5284 7936 2.820197 GTTGTCCCCAATCTTGAACCTC 59.180 50.000 0.00 0.00 32.11 3.85
5744 8396 7.645735 GCTCCTCTCTTTTAGTTTTCTTGTTTG 59.354 37.037 0.00 0.00 0.00 2.93
5887 8629 0.475044 AAAAAGCCTACGTGGGGACA 59.525 50.000 20.55 0.00 36.00 4.02
5889 8631 0.250597 AAAGCCTACGTGGGGACAAC 60.251 55.000 20.55 2.02 46.06 3.32
5894 8636 2.510613 CCTACGTGGGGACAACAAAAT 58.489 47.619 10.68 0.00 46.06 1.82
5895 8637 2.888414 CCTACGTGGGGACAACAAAATT 59.112 45.455 10.68 0.00 46.06 1.82
5897 8639 4.155280 CCTACGTGGGGACAACAAAATTAG 59.845 45.833 10.68 0.00 46.06 1.73
5931 8802 7.040132 TGTGGATTTGTACATGTCTAAATGCAA 60.040 33.333 27.59 19.90 40.70 4.08
5944 8815 7.112122 TGTCTAAATGCAATCCTTGTCTACAT 58.888 34.615 0.00 0.00 0.00 2.29
5952 8823 6.058183 GCAATCCTTGTCTACATAATCAGGT 58.942 40.000 0.00 0.00 0.00 4.00
5954 8825 7.715249 GCAATCCTTGTCTACATAATCAGGTAA 59.285 37.037 0.00 0.00 0.00 2.85
6026 8900 3.502595 AGACGCTTTTTAAGGCTCCTTTC 59.497 43.478 6.47 0.00 37.47 2.62
6030 8904 5.106277 ACGCTTTTTAAGGCTCCTTTCATAC 60.106 40.000 6.47 0.00 37.47 2.39
6147 9078 8.624776 GGAGTTTTCCATAGGATTCATTTGTAG 58.375 37.037 0.00 0.00 43.45 2.74
6161 9093 9.994432 GATTCATTTGTAGTACATTTGGAGAAG 57.006 33.333 3.28 0.00 0.00 2.85
6185 9117 6.432472 AGAAAAATCATCCACTCAAACCTCTC 59.568 38.462 0.00 0.00 0.00 3.20
6267 9208 6.127310 GGTACAAGAGGACATGACACTATTCT 60.127 42.308 0.00 0.00 0.00 2.40
6269 9210 6.773638 ACAAGAGGACATGACACTATTCTTT 58.226 36.000 0.00 0.00 0.00 2.52
6290 9232 9.612066 TTCTTTTGTTTTTCTATTCCTGCATTT 57.388 25.926 0.00 0.00 0.00 2.32
6291 9233 9.612066 TCTTTTGTTTTTCTATTCCTGCATTTT 57.388 25.926 0.00 0.00 0.00 1.82
6381 9397 4.449068 GCAGTCCATAAGATCATGTTACGG 59.551 45.833 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 14 4.349342 TGTTTTATTGATTGTTGGGGCCTT 59.651 37.500 0.84 0.00 0.00 4.35
47 49 2.129607 GTGAGGCTGTTTTGTGCATTG 58.870 47.619 0.00 0.00 0.00 2.82
55 57 0.250338 GGGTCTCGTGAGGCTGTTTT 60.250 55.000 0.00 0.00 32.63 2.43
66 68 1.071228 GTGGTTTTAGTGGGGTCTCGT 59.929 52.381 0.00 0.00 0.00 4.18
68 70 1.804601 CGTGGTTTTAGTGGGGTCTC 58.195 55.000 0.00 0.00 0.00 3.36
75 77 3.634568 TGGATTTGCGTGGTTTTAGTG 57.365 42.857 0.00 0.00 0.00 2.74
78 80 4.855715 TGATTGGATTTGCGTGGTTTTA 57.144 36.364 0.00 0.00 0.00 1.52
123 125 0.884704 TTGAACTTGTGCTCGGCTCC 60.885 55.000 0.00 0.00 0.00 4.70
153 155 2.031769 TCACGTCTTCTTGCTTGCATTG 60.032 45.455 0.00 0.00 0.00 2.82
183 185 3.378112 TGCTACCATCTGCATTGTTAAGC 59.622 43.478 0.00 0.00 33.94 3.09
208 212 0.997363 TCGTCTCCTGGACCCTCTTA 59.003 55.000 0.00 0.00 41.64 2.10
209 213 0.336737 ATCGTCTCCTGGACCCTCTT 59.663 55.000 0.00 0.00 41.64 2.85
248 252 2.533266 GTTGTTATCGTGTACCCTCGG 58.467 52.381 0.00 0.00 0.00 4.63
253 257 4.030977 GTGATGTCGTTGTTATCGTGTACC 59.969 45.833 0.00 0.00 0.00 3.34
285 290 5.582689 AAGATTAGGAAAATTTGGCGGAG 57.417 39.130 0.00 0.00 0.00 4.63
320 325 7.633789 AGTGAGGCTCCTTCTATTTTTATTCA 58.366 34.615 12.86 0.00 0.00 2.57
333 339 2.856760 TGGATCTAGTGAGGCTCCTT 57.143 50.000 12.86 2.40 0.00 3.36
372 399 2.668144 TCTTGGTAGGGTTTTGTGGG 57.332 50.000 0.00 0.00 0.00 4.61
373 400 4.148838 TCAATCTTGGTAGGGTTTTGTGG 58.851 43.478 0.00 0.00 0.00 4.17
374 401 5.982890 ATCAATCTTGGTAGGGTTTTGTG 57.017 39.130 0.00 0.00 0.00 3.33
375 402 7.466804 TCTTATCAATCTTGGTAGGGTTTTGT 58.533 34.615 0.00 0.00 0.00 2.83
376 403 7.938140 TCTTATCAATCTTGGTAGGGTTTTG 57.062 36.000 0.00 0.00 0.00 2.44
384 411 6.945435 TGGTGCTTTTCTTATCAATCTTGGTA 59.055 34.615 0.00 0.00 0.00 3.25
423 453 1.229529 TTCAGTCCACCCCTCCCTC 60.230 63.158 0.00 0.00 0.00 4.30
424 454 1.229658 CTTCAGTCCACCCCTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
426 456 1.229529 TCCTTCAGTCCACCCCTCC 60.230 63.158 0.00 0.00 0.00 4.30
428 458 0.193574 TTCTCCTTCAGTCCACCCCT 59.806 55.000 0.00 0.00 0.00 4.79
463 502 3.667960 CGCTTTTATCTGCTGTGTTGACC 60.668 47.826 0.00 0.00 0.00 4.02
551 590 4.492160 CTGCTGCTGCCGCCATTG 62.492 66.667 13.49 0.00 38.71 2.82
892 931 3.917760 GATCACGGGGAGGAGCGG 61.918 72.222 0.00 0.00 0.00 5.52
893 932 3.917760 GGATCACGGGGAGGAGCG 61.918 72.222 0.00 0.00 0.00 5.03
894 933 3.551407 GGGATCACGGGGAGGAGC 61.551 72.222 0.00 0.00 0.00 4.70
895 934 2.844839 GGGGATCACGGGGAGGAG 60.845 72.222 0.00 0.00 0.00 3.69
896 935 3.364964 AGGGGATCACGGGGAGGA 61.365 66.667 0.00 0.00 0.00 3.71
897 936 2.844839 GAGGGGATCACGGGGAGG 60.845 72.222 0.00 0.00 0.00 4.30
898 937 2.844839 GGAGGGGATCACGGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
899 938 4.492303 GGGAGGGGATCACGGGGA 62.492 72.222 0.00 0.00 0.00 4.81
905 944 4.431524 AAGCGGGGGAGGGGATCA 62.432 66.667 0.00 0.00 0.00 2.92
906 945 3.561241 GAAGCGGGGGAGGGGATC 61.561 72.222 0.00 0.00 0.00 3.36
1070 1218 1.222766 ACGAGATCGGATCGGACGAG 61.223 60.000 27.20 14.43 44.24 4.18
1073 1221 2.117910 GAAAACGAGATCGGATCGGAC 58.882 52.381 12.08 7.39 44.36 4.79
1087 1235 4.042398 TGAGAAGACGAGAACAGAAAACG 58.958 43.478 0.00 0.00 0.00 3.60
1093 1241 2.320367 CGGTTGAGAAGACGAGAACAG 58.680 52.381 0.00 0.00 0.00 3.16
1100 1248 1.660575 ACACGCGGTTGAGAAGACG 60.661 57.895 12.47 0.00 0.00 4.18
1111 1259 2.024022 CAAACACACCACACGCGG 59.976 61.111 12.47 1.27 0.00 6.46
1334 1519 4.439974 GGAACAGAGTGAATGCAAACAACA 60.440 41.667 0.00 0.00 0.00 3.33
1347 1539 1.205893 GGAGCAGGTAGGAACAGAGTG 59.794 57.143 0.00 0.00 0.00 3.51
1350 1542 0.970937 CCGGAGCAGGTAGGAACAGA 60.971 60.000 0.00 0.00 0.00 3.41
1351 1543 0.970937 TCCGGAGCAGGTAGGAACAG 60.971 60.000 0.00 0.00 0.00 3.16
1357 1549 4.158764 CCTAGATAAATCCGGAGCAGGTAG 59.841 50.000 11.34 6.44 0.00 3.18
1376 1569 3.524541 GCAAACCAATGCCAAATCCTAG 58.475 45.455 0.00 0.00 40.49 3.02
1427 1628 8.817100 CCAGTTCAATCAATCAAATGATCAATG 58.183 33.333 0.00 2.19 39.08 2.82
1450 1661 2.103094 TCCATCTCGACTTAATGCCCAG 59.897 50.000 0.00 0.00 0.00 4.45
1475 1686 4.547367 CGAAGGCCATCCGTCCCC 62.547 72.222 5.01 0.00 37.54 4.81
1477 1688 3.682292 AAGCGAAGGCCATCCGTCC 62.682 63.158 5.01 0.00 41.24 4.79
1478 1689 1.305930 AAAAGCGAAGGCCATCCGTC 61.306 55.000 5.01 1.91 41.24 4.79
1479 1690 0.035820 TAAAAGCGAAGGCCATCCGT 60.036 50.000 5.01 0.00 41.24 4.69
1480 1691 1.002468 CATAAAAGCGAAGGCCATCCG 60.002 52.381 5.01 6.27 41.24 4.18
1624 1846 5.034554 TGAATTAGCAAAACTTCTCAGCG 57.965 39.130 0.00 0.00 0.00 5.18
1634 1856 5.622914 GCCTGCAAGAGATGAATTAGCAAAA 60.623 40.000 0.00 0.00 34.07 2.44
1640 1862 2.947652 GCAGCCTGCAAGAGATGAATTA 59.052 45.455 12.82 0.00 44.26 1.40
1641 1863 1.749634 GCAGCCTGCAAGAGATGAATT 59.250 47.619 12.82 0.00 44.26 2.17
1666 1888 1.891060 GCTTCTCGCTGTGGACAACG 61.891 60.000 0.00 0.00 36.84 4.10
1818 2040 7.908601 CCAACTAAATACGGAAAGCAATAGAAC 59.091 37.037 0.00 0.00 0.00 3.01
1853 2075 5.502706 CGATCAGTAACAAACGGACAAACAA 60.503 40.000 0.00 0.00 35.00 2.83
1855 2077 4.209703 TCGATCAGTAACAAACGGACAAAC 59.790 41.667 0.00 0.00 35.00 2.93
1861 2083 5.718649 AATCATCGATCAGTAACAAACGG 57.281 39.130 0.00 0.00 0.00 4.44
1871 2093 9.793252 TGTATGACATACATAATCATCGATCAG 57.207 33.333 21.76 0.00 42.19 2.90
1891 2113 3.307410 CCCAGCACTACCAAGTTGTATGA 60.307 47.826 1.45 0.00 31.97 2.15
1901 2128 0.115547 TACCACTCCCAGCACTACCA 59.884 55.000 0.00 0.00 0.00 3.25
1918 2152 7.066374 CAAGAAGGCACTCTTATTGTTCTAC 57.934 40.000 2.01 0.00 44.94 2.59
1928 2162 2.614057 CACGAAACAAGAAGGCACTCTT 59.386 45.455 0.00 0.00 38.49 2.85
1929 2163 2.213499 CACGAAACAAGAAGGCACTCT 58.787 47.619 0.00 0.00 38.49 3.24
1990 2379 2.552155 GGGTTCTGTATGTGCCTTGTCA 60.552 50.000 0.00 0.00 0.00 3.58
2043 2970 6.437477 ACAGTGACATAAGAAGACAGGTGATA 59.563 38.462 0.00 0.00 0.00 2.15
2089 3016 1.535462 CTAGTGAACAGCAAAACGGGG 59.465 52.381 0.00 0.00 0.00 5.73
2130 4131 2.666272 TTTCCCCAACTGTGCATACA 57.334 45.000 0.00 0.00 35.08 2.29
2152 4153 0.597637 ACGCGAGACAGACAAGGTTG 60.598 55.000 15.93 0.00 0.00 3.77
2167 4168 2.984471 ACAATGAACTAGTACACACGCG 59.016 45.455 3.53 3.53 0.00 6.01
2202 4601 5.099042 ACCTACATACAAGGGACATTCAC 57.901 43.478 0.00 0.00 38.54 3.18
2208 4607 6.649557 GTGCATATAACCTACATACAAGGGAC 59.350 42.308 0.00 0.00 38.54 4.46
2211 4610 7.661437 ACATGTGCATATAACCTACATACAAGG 59.339 37.037 0.00 0.00 40.20 3.61
2257 4656 8.972349 GTACACAGTACCTCTAAAGTAAACAAC 58.028 37.037 0.00 0.00 0.00 3.32
2286 4685 4.697352 AGTCTGATCTTACCACAACAATGC 59.303 41.667 0.00 0.00 0.00 3.56
2341 4740 8.986477 ACTATTCATTTTTAACATCTGTTGGC 57.014 30.769 5.84 0.00 38.90 4.52
2373 4772 3.540617 TGTAAAGCAAACACAGCTCTGA 58.459 40.909 3.60 0.00 42.53 3.27
2506 5070 7.308229 CCCACATTAAGCAGATAAGATTACAGC 60.308 40.741 0.00 0.00 0.00 4.40
2593 5168 2.282391 TCACCCACAGCCATGCAC 60.282 61.111 0.00 0.00 0.00 4.57
2609 5184 8.803235 TGTATGTTCCTATAGTGTATCCATGTC 58.197 37.037 0.00 0.00 0.00 3.06
2669 5250 0.320050 TGTGCCAGCTATCGTGTTCA 59.680 50.000 0.00 0.00 0.00 3.18
2693 5274 2.348472 ACTTTGAGGAGATGGGTTCCA 58.652 47.619 0.00 0.00 37.18 3.53
2695 5276 5.363939 CATCTACTTTGAGGAGATGGGTTC 58.636 45.833 18.40 0.00 41.86 3.62
2696 5277 5.365021 CATCTACTTTGAGGAGATGGGTT 57.635 43.478 18.40 0.00 41.86 4.11
2701 5282 7.834681 TGTACAGTACATCTACTTTGAGGAGAT 59.165 37.037 9.51 0.00 32.89 2.75
2702 5283 7.173032 TGTACAGTACATCTACTTTGAGGAGA 58.827 38.462 9.51 0.00 32.89 3.71
2740 5323 8.807667 TTTACAGCTTACAAGAGTTACTGTAC 57.192 34.615 0.00 0.00 36.64 2.90
3030 5613 7.724305 ACGTTACCAATACTATATGCCAAAG 57.276 36.000 0.00 0.00 0.00 2.77
3031 5614 9.263538 CTAACGTTACCAATACTATATGCCAAA 57.736 33.333 3.29 0.00 0.00 3.28
3529 6166 0.865769 AACGGTGAAGACGATGCAAC 59.134 50.000 0.00 0.00 34.93 4.17
3536 6173 3.615496 CCCAGTTTATAACGGTGAAGACG 59.385 47.826 0.00 0.00 36.23 4.18
3596 6233 4.706476 TCAGAAATTCCCACATTAAGCAGG 59.294 41.667 0.00 0.00 0.00 4.85
3799 6439 8.905702 GCAAAGAGTGTTGTTACATCTAATTTG 58.094 33.333 0.00 3.22 36.50 2.32
3861 6505 2.550830 AGAGTGTTGTAGCTTGGGTG 57.449 50.000 0.00 0.00 0.00 4.61
3862 6506 3.577805 AAAGAGTGTTGTAGCTTGGGT 57.422 42.857 0.00 0.00 0.00 4.51
3864 6508 5.597813 CACTAAAGAGTGTTGTAGCTTGG 57.402 43.478 0.00 0.00 46.88 3.61
3876 6520 4.262506 GCAACAGACCTACCACTAAAGAGT 60.263 45.833 0.00 0.00 35.80 3.24
3877 6521 4.021016 AGCAACAGACCTACCACTAAAGAG 60.021 45.833 0.00 0.00 0.00 2.85
3878 6522 3.901844 AGCAACAGACCTACCACTAAAGA 59.098 43.478 0.00 0.00 0.00 2.52
3879 6523 4.273148 AGCAACAGACCTACCACTAAAG 57.727 45.455 0.00 0.00 0.00 1.85
3893 6540 5.975344 CACTGCCAATCATTTATAGCAACAG 59.025 40.000 0.00 0.00 0.00 3.16
3950 6597 2.062971 AATGATGCCCACATGGAGAC 57.937 50.000 0.00 0.00 36.35 3.36
3965 6612 2.957680 ACAGCAACCATGACACAAATGA 59.042 40.909 0.00 0.00 0.00 2.57
3995 6642 2.154854 TCTGTGTGCAGTAAGCTGTC 57.845 50.000 0.00 0.00 45.94 3.51
3999 6646 2.669391 GCCAATTCTGTGTGCAGTAAGC 60.669 50.000 0.00 0.00 43.05 3.09
4016 6663 1.098712 GTTGAAGGACACGGTGCCAA 61.099 55.000 19.08 9.31 0.00 4.52
4109 6756 6.047231 GCCAACGAACAGGTAATACTAATCT 58.953 40.000 0.00 0.00 0.00 2.40
4168 6815 8.604640 AAATGTGTTGCAACAATTCATATTGA 57.395 26.923 32.61 3.68 43.12 2.57
4203 6850 8.967664 AACTTGATGTTTACCTACACAACTTA 57.032 30.769 0.00 0.00 34.84 2.24
4204 6851 7.554835 TGAACTTGATGTTTACCTACACAACTT 59.445 33.333 0.00 0.00 39.30 2.66
4386 7034 4.081697 CAGTCACATACTCACATACCACCA 60.082 45.833 0.00 0.00 35.76 4.17
4387 7035 4.081642 ACAGTCACATACTCACATACCACC 60.082 45.833 0.00 0.00 35.76 4.61
4388 7036 5.073311 ACAGTCACATACTCACATACCAC 57.927 43.478 0.00 0.00 35.76 4.16
4638 7286 0.250513 AGATCGCCCAGGACAGTTTC 59.749 55.000 0.00 0.00 0.00 2.78
4692 7340 5.946298 AGATGCAAAATCACATGTACACAG 58.054 37.500 0.00 0.00 0.00 3.66
4746 7397 1.577328 GGTCAGTTGACGTGGCATGG 61.577 60.000 12.05 0.00 45.65 3.66
4755 7406 5.531287 ACCTGAAAATACTTGGTCAGTTGAC 59.469 40.000 3.67 3.67 44.04 3.18
4999 7651 6.045318 CACACAAATCAGATGAGTAGGTAGG 58.955 44.000 0.00 0.00 0.00 3.18
5000 7652 6.634805 ACACACAAATCAGATGAGTAGGTAG 58.365 40.000 0.00 0.00 0.00 3.18
5001 7653 6.605471 ACACACAAATCAGATGAGTAGGTA 57.395 37.500 0.00 0.00 0.00 3.08
5002 7654 5.489792 ACACACAAATCAGATGAGTAGGT 57.510 39.130 0.00 0.00 0.00 3.08
5099 7751 0.896226 GGAAGGCGGACTTGTAGTCT 59.104 55.000 0.00 0.00 44.46 3.24
5160 7812 3.706140 GCCATGAGCGTCTAACGG 58.294 61.111 0.00 0.00 42.82 4.44
5191 7843 8.213679 GTCAATGACATGGTATATATAGGCCAT 58.786 37.037 8.74 12.55 41.92 4.40
5284 7936 0.251634 GAGAGAAGGTCCAGGCCAAG 59.748 60.000 5.01 0.00 0.00 3.61
5661 8313 8.839914 CACATGACAATATTTACGTTGAACAAG 58.160 33.333 0.00 0.00 0.00 3.16
5700 8352 3.304928 GGAGCAAAATAATGGATGCCTCG 60.305 47.826 0.00 0.00 39.59 4.63
5878 8620 2.556622 AGCTAATTTTGTTGTCCCCACG 59.443 45.455 0.00 0.00 0.00 4.94
5985 8859 9.758651 AAGCGTCTACATTTATTACATATGTCA 57.241 29.630 12.68 0.98 34.55 3.58
6002 8876 3.597255 AGGAGCCTTAAAAAGCGTCTAC 58.403 45.455 0.00 0.00 0.00 2.59
6016 8890 7.233348 TGAAATTTCTTTGTATGAAAGGAGCCT 59.767 33.333 18.64 0.00 36.94 4.58
6046 8923 7.983484 CCTAAAGATCCAAATCCTCCAAAAATG 59.017 37.037 0.00 0.00 31.78 2.32
6120 9051 6.095440 ACAAATGAATCCTATGGAAAACTCCG 59.905 38.462 0.00 0.00 34.34 4.63
6147 9078 8.522830 TGGATGATTTTTCTTCTCCAAATGTAC 58.477 33.333 0.00 0.00 30.15 2.90
6161 9093 6.432472 AGAGAGGTTTGAGTGGATGATTTTTC 59.568 38.462 0.00 0.00 0.00 2.29
6168 9100 3.692257 ACAGAGAGGTTTGAGTGGATG 57.308 47.619 0.00 0.00 0.00 3.51
6293 9235 9.649167 CTCAAAATGCAGGAATAGAAAAATTCT 57.351 29.630 0.00 0.00 43.72 2.40
6294 9236 9.643693 TCTCAAAATGCAGGAATAGAAAAATTC 57.356 29.630 0.00 0.00 35.51 2.17
6297 9239 9.643693 GATTCTCAAAATGCAGGAATAGAAAAA 57.356 29.630 7.43 0.00 0.00 1.94
6298 9240 8.253113 GGATTCTCAAAATGCAGGAATAGAAAA 58.747 33.333 7.43 0.00 0.00 2.29
6299 9241 7.147846 GGGATTCTCAAAATGCAGGAATAGAAA 60.148 37.037 7.43 0.00 0.00 2.52
6300 9242 6.322201 GGGATTCTCAAAATGCAGGAATAGAA 59.678 38.462 0.00 0.00 0.00 2.10
6301 9243 5.829924 GGGATTCTCAAAATGCAGGAATAGA 59.170 40.000 0.00 0.00 0.00 1.98
6302 9244 5.595542 TGGGATTCTCAAAATGCAGGAATAG 59.404 40.000 0.00 0.00 0.00 1.73
6303 9245 5.360714 GTGGGATTCTCAAAATGCAGGAATA 59.639 40.000 0.00 0.00 0.00 1.75
6304 9246 4.161001 GTGGGATTCTCAAAATGCAGGAAT 59.839 41.667 0.00 0.00 0.00 3.01
6305 9247 3.511146 GTGGGATTCTCAAAATGCAGGAA 59.489 43.478 0.00 0.00 0.00 3.36
6306 9248 3.091545 GTGGGATTCTCAAAATGCAGGA 58.908 45.455 0.00 0.00 0.00 3.86
6307 9249 2.159338 CGTGGGATTCTCAAAATGCAGG 60.159 50.000 0.00 0.00 0.00 4.85
6308 9250 2.159338 CCGTGGGATTCTCAAAATGCAG 60.159 50.000 0.00 0.00 0.00 4.41
6309 9251 1.818060 CCGTGGGATTCTCAAAATGCA 59.182 47.619 0.00 0.00 0.00 3.96
6310 9252 2.091541 TCCGTGGGATTCTCAAAATGC 58.908 47.619 0.00 0.00 0.00 3.56
6311 9253 3.947196 TGATCCGTGGGATTCTCAAAATG 59.053 43.478 0.00 0.00 43.27 2.32
6312 9254 4.235079 TGATCCGTGGGATTCTCAAAAT 57.765 40.909 0.00 0.00 43.27 1.82
6381 9397 4.683781 GCAGTTCTGATCTGGATTCGATAC 59.316 45.833 15.47 0.00 33.98 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.