Multiple sequence alignment - TraesCS4B01G353500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G353500 chr4B 100.000 4134 0 0 1 4134 645296011 645300144 0.000000e+00 7635.0
1 TraesCS4B01G353500 chr4B 96.355 439 13 1 2 440 609358572 609358137 0.000000e+00 719.0
2 TraesCS4B01G353500 chr4D 95.328 1648 49 12 1803 3435 501317671 501319305 0.000000e+00 2591.0
3 TraesCS4B01G353500 chr4D 81.980 505 36 24 656 1124 501316199 501316684 1.080000e-100 377.0
4 TraesCS4B01G353500 chr4D 96.569 204 7 0 3931 4134 501320050 501320253 5.120000e-89 339.0
5 TraesCS4B01G353500 chr4D 88.583 254 17 5 3510 3752 501319429 501319681 8.690000e-77 298.0
6 TraesCS4B01G353500 chr4D 83.575 207 17 7 460 652 501315959 501316162 1.180000e-40 178.0
7 TraesCS4B01G353500 chr4D 91.667 72 4 2 3432 3502 501319376 501319446 9.460000e-17 99.0
8 TraesCS4B01G353500 chr4D 85.484 62 2 5 1714 1771 501317600 501317658 1.610000e-04 58.4
9 TraesCS4B01G353500 chr5A 92.538 1769 82 26 1686 3435 682934464 682932727 0.000000e+00 2490.0
10 TraesCS4B01G353500 chr5A 78.069 839 79 50 432 1186 682935822 682935005 2.280000e-117 433.0
11 TraesCS4B01G353500 chr5A 92.653 245 16 2 3523 3766 682932629 682932386 6.580000e-93 351.0
12 TraesCS4B01G353500 chr5A 93.377 151 10 0 3877 4027 682932368 682932218 1.500000e-54 224.0
13 TraesCS4B01G353500 chr5A 97.273 110 3 0 4025 4134 682932130 682932021 1.960000e-43 187.0
14 TraesCS4B01G353500 chr5A 100.000 53 0 0 3434 3486 682932680 682932628 9.460000e-17 99.0
15 TraesCS4B01G353500 chr6A 87.681 690 65 12 1744 2423 437703225 437702546 0.000000e+00 785.0
16 TraesCS4B01G353500 chr7B 86.880 686 75 7 1744 2421 42361841 42361163 0.000000e+00 754.0
17 TraesCS4B01G353500 chr7B 88.043 92 4 5 1794 1885 676672605 676672689 7.310000e-18 102.0
18 TraesCS4B01G353500 chr5B 95.900 439 18 0 2 440 503870241 503869803 0.000000e+00 712.0
19 TraesCS4B01G353500 chr5B 88.182 110 7 5 1776 1885 37736825 37736722 4.340000e-25 126.0
20 TraesCS4B01G353500 chr3B 95.672 439 19 0 2 440 717045858 717046296 0.000000e+00 706.0
21 TraesCS4B01G353500 chr3B 87.273 110 8 4 1776 1885 321022438 321022335 2.020000e-23 121.0
22 TraesCS4B01G353500 chr3B 87.273 110 8 5 1776 1885 324064814 324064917 2.020000e-23 121.0
23 TraesCS4B01G353500 chr3B 86.364 110 10 4 1776 1885 818600478 818600374 9.390000e-22 115.0
24 TraesCS4B01G353500 chr4A 95.652 437 19 0 4 440 663371410 663370974 0.000000e+00 702.0
25 TraesCS4B01G353500 chr2B 95.444 439 20 0 2 440 711128437 711127999 0.000000e+00 701.0
26 TraesCS4B01G353500 chr2B 90.217 92 3 5 1794 1885 752649521 752649436 9.390000e-22 115.0
27 TraesCS4B01G353500 chr1B 94.912 452 16 4 2 447 580629453 580629003 0.000000e+00 701.0
28 TraesCS4B01G353500 chr1B 94.582 443 16 5 2 440 615470683 615471121 0.000000e+00 678.0
29 TraesCS4B01G353500 chr1B 94.533 439 23 1 2 440 572832866 572832429 0.000000e+00 676.0
30 TraesCS4B01G353500 chr1B 88.043 92 4 6 1794 1885 670719646 670719562 7.310000e-18 102.0
31 TraesCS4B01G353500 chr6B 94.305 439 25 0 2 440 519803114 519802676 0.000000e+00 673.0
32 TraesCS4B01G353500 chr6B 94.895 333 14 2 1415 1745 32111195 32111526 6.130000e-143 518.0
33 TraesCS4B01G353500 chr6B 94.654 318 16 1 1776 2093 32111697 32112013 3.710000e-135 492.0
34 TraesCS4B01G353500 chr6B 89.130 92 4 5 1794 1885 83895736 83895651 4.370000e-20 110.0
35 TraesCS4B01G353500 chr5D 86.364 110 7 6 1776 1885 165176084 165175983 3.380000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G353500 chr4B 645296011 645300144 4133 False 7635.000000 7635 100.000000 1 4134 1 chr4B.!!$F1 4133
1 TraesCS4B01G353500 chr4D 501315959 501320253 4294 False 562.914286 2591 89.026571 460 4134 7 chr4D.!!$F1 3674
2 TraesCS4B01G353500 chr5A 682932021 682935822 3801 True 630.666667 2490 92.318333 432 4134 6 chr5A.!!$R1 3702
3 TraesCS4B01G353500 chr6A 437702546 437703225 679 True 785.000000 785 87.681000 1744 2423 1 chr6A.!!$R1 679
4 TraesCS4B01G353500 chr7B 42361163 42361841 678 True 754.000000 754 86.880000 1744 2421 1 chr7B.!!$R1 677
5 TraesCS4B01G353500 chr6B 32111195 32112013 818 False 505.000000 518 94.774500 1415 2093 2 chr6B.!!$F1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 778 0.031857 CAAAACCTGTTGCCATCGCA 59.968 50.0 0.00 0.00 45.49 5.10 F
1127 1243 0.031449 GATCCGCTCTACAGGTCAGC 59.969 60.0 0.00 0.00 0.00 4.26 F
1403 1624 0.110295 TGTTGAGGGTGGGTGTCATG 59.890 55.0 0.00 0.00 0.00 3.07 F
2508 3205 0.183014 ATCCAGCTTGGCCATCTCTG 59.817 55.0 6.09 14.02 37.47 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 2479 0.322008 GCTGGCCAAGTCAGTAGCTT 60.322 55.0 7.01 0.00 37.61 3.74 R
2884 3581 0.595095 CTGTCCACAAAAGGAGCTGC 59.405 55.0 0.00 0.00 38.64 5.25 R
2956 3653 0.681887 TTGAGAGGACACCGCCGATA 60.682 55.0 0.00 0.00 0.00 2.92 R
3909 4767 0.250597 AAAGCCTACGTGGGGACAAC 60.251 55.0 20.55 2.02 46.06 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.571757 AAGATGCTCGACGCCGAA 59.428 55.556 0.00 0.00 45.04 4.30
18 19 1.517257 AAGATGCTCGACGCCGAAG 60.517 57.895 0.00 0.00 45.04 3.79
40 41 3.651803 CCTGAACTAGGTCATCCGATC 57.348 52.381 11.77 0.00 42.00 3.69
41 42 2.030717 CCTGAACTAGGTCATCCGATCG 60.031 54.545 11.77 8.51 42.00 3.69
42 43 1.954382 TGAACTAGGTCATCCGATCGG 59.046 52.381 28.62 28.62 39.05 4.18
43 44 0.674534 AACTAGGTCATCCGATCGGC 59.325 55.000 29.62 14.94 39.05 5.54
44 45 1.210413 CTAGGTCATCCGATCGGCG 59.790 63.158 29.62 21.57 39.05 6.46
45 46 1.516365 CTAGGTCATCCGATCGGCGT 61.516 60.000 29.62 18.03 38.67 5.68
46 47 1.792118 TAGGTCATCCGATCGGCGTG 61.792 60.000 29.62 26.71 38.67 5.34
47 48 2.658593 GTCATCCGATCGGCGTGG 60.659 66.667 29.62 17.06 38.67 4.94
48 49 4.585526 TCATCCGATCGGCGTGGC 62.586 66.667 29.62 0.00 38.67 5.01
58 59 2.725641 GGCGTGGCCGTTCTTTTT 59.274 55.556 0.00 0.00 39.62 1.94
73 74 3.784429 TTTTTAGGCTGGCATGGGT 57.216 47.368 3.38 0.00 0.00 4.51
74 75 1.265236 TTTTTAGGCTGGCATGGGTG 58.735 50.000 3.38 0.00 0.00 4.61
105 106 4.778143 GGGGCCGCTGGTAGTGTG 62.778 72.222 13.57 0.00 0.00 3.82
112 113 4.063967 CTGGTAGTGTGCCGGCGA 62.064 66.667 23.90 8.13 0.00 5.54
113 114 3.989698 CTGGTAGTGTGCCGGCGAG 62.990 68.421 23.90 0.00 0.00 5.03
114 115 3.755628 GGTAGTGTGCCGGCGAGA 61.756 66.667 23.90 6.80 0.00 4.04
115 116 2.260434 GTAGTGTGCCGGCGAGAA 59.740 61.111 23.90 0.00 0.00 2.87
116 117 1.373748 GTAGTGTGCCGGCGAGAAA 60.374 57.895 23.90 3.93 0.00 2.52
117 118 0.947180 GTAGTGTGCCGGCGAGAAAA 60.947 55.000 23.90 0.00 0.00 2.29
118 119 0.947180 TAGTGTGCCGGCGAGAAAAC 60.947 55.000 23.90 13.95 0.00 2.43
119 120 2.203084 TGTGCCGGCGAGAAAACA 60.203 55.556 23.90 16.71 0.00 2.83
120 121 1.599518 TGTGCCGGCGAGAAAACAT 60.600 52.632 23.90 0.00 0.00 2.71
121 122 1.169661 TGTGCCGGCGAGAAAACATT 61.170 50.000 23.90 0.00 0.00 2.71
122 123 0.454452 GTGCCGGCGAGAAAACATTC 60.454 55.000 23.90 0.00 0.00 2.67
123 124 0.886938 TGCCGGCGAGAAAACATTCA 60.887 50.000 23.90 0.00 0.00 2.57
124 125 0.451783 GCCGGCGAGAAAACATTCAT 59.548 50.000 12.58 0.00 0.00 2.57
125 126 1.135402 GCCGGCGAGAAAACATTCATT 60.135 47.619 12.58 0.00 0.00 2.57
126 127 2.671070 GCCGGCGAGAAAACATTCATTT 60.671 45.455 12.58 0.00 0.00 2.32
127 128 3.574614 CCGGCGAGAAAACATTCATTTT 58.425 40.909 9.30 0.00 34.46 1.82
128 129 3.364621 CCGGCGAGAAAACATTCATTTTG 59.635 43.478 9.30 0.00 31.90 2.44
129 130 3.364621 CGGCGAGAAAACATTCATTTTGG 59.635 43.478 0.00 0.00 31.90 3.28
130 131 4.555262 GGCGAGAAAACATTCATTTTGGA 58.445 39.130 0.00 0.00 31.90 3.53
131 132 4.622740 GGCGAGAAAACATTCATTTTGGAG 59.377 41.667 0.00 0.00 31.90 3.86
132 133 4.622740 GCGAGAAAACATTCATTTTGGAGG 59.377 41.667 0.00 0.00 31.90 4.30
133 134 4.622740 CGAGAAAACATTCATTTTGGAGGC 59.377 41.667 0.00 0.00 31.90 4.70
134 135 4.898320 AGAAAACATTCATTTTGGAGGCC 58.102 39.130 0.00 0.00 31.90 5.19
135 136 3.317603 AAACATTCATTTTGGAGGCCG 57.682 42.857 0.00 0.00 0.00 6.13
136 137 1.185315 ACATTCATTTTGGAGGCCGG 58.815 50.000 0.00 0.00 0.00 6.13
137 138 0.179103 CATTCATTTTGGAGGCCGGC 60.179 55.000 21.18 21.18 0.00 6.13
138 139 0.324645 ATTCATTTTGGAGGCCGGCT 60.325 50.000 28.56 12.77 0.00 5.52
139 140 1.250154 TTCATTTTGGAGGCCGGCTG 61.250 55.000 28.56 14.33 0.00 4.85
140 141 1.978617 CATTTTGGAGGCCGGCTGT 60.979 57.895 28.56 14.72 0.00 4.40
141 142 1.978617 ATTTTGGAGGCCGGCTGTG 60.979 57.895 28.56 0.00 0.00 3.66
142 143 2.713531 ATTTTGGAGGCCGGCTGTGT 62.714 55.000 28.56 8.78 0.00 3.72
143 144 2.920076 TTTTGGAGGCCGGCTGTGTT 62.920 55.000 28.56 7.04 0.00 3.32
144 145 4.641645 TGGAGGCCGGCTGTGTTG 62.642 66.667 28.56 0.00 0.00 3.33
173 174 4.680237 CTGTGTTGCCGGCGAGGA 62.680 66.667 23.90 6.59 45.00 3.71
174 175 4.680237 TGTGTTGCCGGCGAGGAG 62.680 66.667 23.90 0.00 45.00 3.69
175 176 4.373116 GTGTTGCCGGCGAGGAGA 62.373 66.667 23.90 0.00 45.00 3.71
176 177 3.621805 TGTTGCCGGCGAGGAGAA 61.622 61.111 23.90 6.19 45.00 2.87
177 178 3.119096 GTTGCCGGCGAGGAGAAC 61.119 66.667 23.90 15.63 45.00 3.01
178 179 3.311110 TTGCCGGCGAGGAGAACT 61.311 61.111 23.90 0.00 45.00 3.01
179 180 1.980232 TTGCCGGCGAGGAGAACTA 60.980 57.895 23.90 0.00 45.00 2.24
180 181 1.327690 TTGCCGGCGAGGAGAACTAT 61.328 55.000 23.90 0.00 45.00 2.12
181 182 1.327690 TGCCGGCGAGGAGAACTATT 61.328 55.000 23.90 0.00 45.00 1.73
182 183 0.597898 GCCGGCGAGGAGAACTATTC 60.598 60.000 12.58 0.00 45.00 1.75
183 184 0.317938 CCGGCGAGGAGAACTATTCG 60.318 60.000 9.30 0.00 45.00 3.34
184 185 0.381089 CGGCGAGGAGAACTATTCGT 59.619 55.000 0.00 0.00 35.61 3.85
185 186 1.202268 CGGCGAGGAGAACTATTCGTT 60.202 52.381 0.00 0.00 38.91 3.85
186 187 2.734492 CGGCGAGGAGAACTATTCGTTT 60.734 50.000 0.00 0.00 35.56 3.60
187 188 3.259902 GGCGAGGAGAACTATTCGTTTT 58.740 45.455 0.00 0.00 35.56 2.43
188 189 3.062234 GGCGAGGAGAACTATTCGTTTTG 59.938 47.826 0.00 0.00 35.56 2.44
189 190 3.062234 GCGAGGAGAACTATTCGTTTTGG 59.938 47.826 0.00 0.00 35.56 3.28
190 191 4.491676 CGAGGAGAACTATTCGTTTTGGA 58.508 43.478 0.00 0.00 35.56 3.53
191 192 4.563184 CGAGGAGAACTATTCGTTTTGGAG 59.437 45.833 0.00 0.00 35.56 3.86
192 193 4.833390 AGGAGAACTATTCGTTTTGGAGG 58.167 43.478 0.00 0.00 35.56 4.30
193 194 3.374367 GGAGAACTATTCGTTTTGGAGGC 59.626 47.826 0.00 0.00 35.56 4.70
194 195 4.254492 GAGAACTATTCGTTTTGGAGGCT 58.746 43.478 0.00 0.00 35.56 4.58
195 196 4.003648 AGAACTATTCGTTTTGGAGGCTG 58.996 43.478 0.00 0.00 35.56 4.85
196 197 2.711542 ACTATTCGTTTTGGAGGCTGG 58.288 47.619 0.00 0.00 0.00 4.85
197 198 1.401905 CTATTCGTTTTGGAGGCTGGC 59.598 52.381 0.00 0.00 0.00 4.85
198 199 0.251341 ATTCGTTTTGGAGGCTGGCT 60.251 50.000 2.24 2.24 0.00 4.75
199 200 1.172180 TTCGTTTTGGAGGCTGGCTG 61.172 55.000 9.06 0.00 0.00 4.85
200 201 1.898574 CGTTTTGGAGGCTGGCTGT 60.899 57.895 9.06 0.00 0.00 4.40
201 202 1.662044 GTTTTGGAGGCTGGCTGTG 59.338 57.895 9.06 0.00 0.00 3.66
202 203 1.109323 GTTTTGGAGGCTGGCTGTGT 61.109 55.000 9.06 0.00 0.00 3.72
203 204 0.396974 TTTTGGAGGCTGGCTGTGTT 60.397 50.000 9.06 0.00 0.00 3.32
204 205 1.108727 TTTGGAGGCTGGCTGTGTTG 61.109 55.000 9.06 0.00 0.00 3.33
205 206 3.368571 GGAGGCTGGCTGTGTTGC 61.369 66.667 9.06 0.00 0.00 4.17
232 233 4.916293 GCTGATGCCGGCGATGGA 62.916 66.667 23.90 3.26 34.60 3.41
233 234 2.969238 CTGATGCCGGCGATGGAC 60.969 66.667 23.90 9.49 0.00 4.02
234 235 4.889856 TGATGCCGGCGATGGACG 62.890 66.667 23.90 0.00 46.94 4.79
235 236 4.891727 GATGCCGGCGATGGACGT 62.892 66.667 23.90 0.00 45.55 4.34
238 239 4.501714 GCCGGCGATGGACGTGTA 62.502 66.667 12.58 0.00 45.55 2.90
239 240 2.278596 CCGGCGATGGACGTGTAG 60.279 66.667 9.30 0.00 45.55 2.74
240 241 2.278596 CGGCGATGGACGTGTAGG 60.279 66.667 0.00 0.00 40.74 3.18
241 242 2.106332 GGCGATGGACGTGTAGGG 59.894 66.667 0.00 0.00 44.60 3.53
242 243 2.585247 GCGATGGACGTGTAGGGC 60.585 66.667 0.00 0.00 44.60 5.19
243 244 2.278596 CGATGGACGTGTAGGGCG 60.279 66.667 0.00 0.00 37.22 6.13
244 245 2.106332 GATGGACGTGTAGGGCGG 59.894 66.667 0.00 0.00 0.00 6.13
245 246 4.157120 ATGGACGTGTAGGGCGGC 62.157 66.667 0.00 0.00 36.49 6.53
250 251 4.508128 CGTGTAGGGCGGCGTGAT 62.508 66.667 15.06 0.00 0.00 3.06
251 252 2.890474 GTGTAGGGCGGCGTGATG 60.890 66.667 15.06 0.00 0.00 3.07
252 253 3.071837 TGTAGGGCGGCGTGATGA 61.072 61.111 15.06 0.00 0.00 2.92
253 254 2.185867 GTAGGGCGGCGTGATGAA 59.814 61.111 15.06 0.00 0.00 2.57
254 255 2.171725 GTAGGGCGGCGTGATGAAC 61.172 63.158 15.06 0.00 0.00 3.18
255 256 3.379865 TAGGGCGGCGTGATGAACC 62.380 63.158 15.06 0.00 0.00 3.62
260 261 4.090588 GGCGTGATGAACCGGGGA 62.091 66.667 6.32 0.00 0.00 4.81
261 262 2.818274 GCGTGATGAACCGGGGAC 60.818 66.667 6.32 0.00 0.00 4.46
273 274 2.044946 GGGGACGCTGGCTGAATT 60.045 61.111 0.00 0.00 0.00 2.17
274 275 1.223487 GGGGACGCTGGCTGAATTA 59.777 57.895 0.00 0.00 0.00 1.40
275 276 0.815615 GGGGACGCTGGCTGAATTAG 60.816 60.000 0.00 0.00 0.00 1.73
276 277 0.107654 GGGACGCTGGCTGAATTAGT 60.108 55.000 0.00 0.00 0.00 2.24
277 278 1.679032 GGGACGCTGGCTGAATTAGTT 60.679 52.381 0.00 0.00 0.00 2.24
278 279 2.084546 GGACGCTGGCTGAATTAGTTT 58.915 47.619 0.00 0.00 0.00 2.66
279 280 2.488153 GGACGCTGGCTGAATTAGTTTT 59.512 45.455 0.00 0.00 0.00 2.43
280 281 3.057526 GGACGCTGGCTGAATTAGTTTTT 60.058 43.478 0.00 0.00 0.00 1.94
298 299 2.107950 TTTAAGTGGATGCGGACAGG 57.892 50.000 0.00 0.00 0.00 4.00
299 300 1.271856 TTAAGTGGATGCGGACAGGA 58.728 50.000 0.00 0.00 0.00 3.86
300 301 1.496060 TAAGTGGATGCGGACAGGAT 58.504 50.000 0.00 0.00 0.00 3.24
301 302 0.107508 AAGTGGATGCGGACAGGATG 60.108 55.000 0.00 0.00 46.00 3.51
302 303 1.524621 GTGGATGCGGACAGGATGG 60.525 63.158 0.00 0.00 43.62 3.51
303 304 2.111878 GGATGCGGACAGGATGGG 59.888 66.667 0.00 0.00 43.62 4.00
304 305 2.111878 GATGCGGACAGGATGGGG 59.888 66.667 0.00 0.00 43.62 4.96
305 306 4.195334 ATGCGGACAGGATGGGGC 62.195 66.667 0.00 0.00 43.62 5.80
307 308 4.424711 GCGGACAGGATGGGGCAA 62.425 66.667 0.00 0.00 43.62 4.52
308 309 2.354729 CGGACAGGATGGGGCAAA 59.645 61.111 0.00 0.00 43.62 3.68
309 310 1.076777 CGGACAGGATGGGGCAAAT 60.077 57.895 0.00 0.00 43.62 2.32
310 311 1.386525 CGGACAGGATGGGGCAAATG 61.387 60.000 0.00 0.00 43.62 2.32
311 312 1.044790 GGACAGGATGGGGCAAATGG 61.045 60.000 0.00 0.00 43.62 3.16
312 313 0.033208 GACAGGATGGGGCAAATGGA 60.033 55.000 0.00 0.00 43.62 3.41
313 314 0.638292 ACAGGATGGGGCAAATGGAT 59.362 50.000 0.00 0.00 43.62 3.41
314 315 1.045407 CAGGATGGGGCAAATGGATG 58.955 55.000 0.00 0.00 0.00 3.51
315 316 0.761702 AGGATGGGGCAAATGGATGC 60.762 55.000 0.00 0.00 45.67 3.91
322 323 4.910722 CAAATGGATGCGGCCGCG 62.911 66.667 41.73 23.24 45.51 6.46
354 355 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
355 356 2.436646 CACCGCATCCCAGGACAC 60.437 66.667 0.00 0.00 0.00 3.67
356 357 4.082523 ACCGCATCCCAGGACACG 62.083 66.667 3.74 3.74 0.00 4.49
360 361 4.838152 CATCCCAGGACACGCCCG 62.838 72.222 0.00 0.00 37.37 6.13
380 381 3.653078 CACGGCCCCAAACCCCTA 61.653 66.667 0.00 0.00 0.00 3.53
381 382 3.654143 ACGGCCCCAAACCCCTAC 61.654 66.667 0.00 0.00 0.00 3.18
382 383 4.435970 CGGCCCCAAACCCCTACC 62.436 72.222 0.00 0.00 0.00 3.18
383 384 4.070265 GGCCCCAAACCCCTACCC 62.070 72.222 0.00 0.00 0.00 3.69
384 385 3.269632 GCCCCAAACCCCTACCCA 61.270 66.667 0.00 0.00 0.00 4.51
385 386 2.859274 GCCCCAAACCCCTACCCAA 61.859 63.158 0.00 0.00 0.00 4.12
386 387 1.862162 CCCCAAACCCCTACCCAAA 59.138 57.895 0.00 0.00 0.00 3.28
387 388 0.543410 CCCCAAACCCCTACCCAAAC 60.543 60.000 0.00 0.00 0.00 2.93
388 389 0.896479 CCCAAACCCCTACCCAAACG 60.896 60.000 0.00 0.00 0.00 3.60
389 390 0.896479 CCAAACCCCTACCCAAACGG 60.896 60.000 0.00 0.00 37.81 4.44
390 391 0.110869 CAAACCCCTACCCAAACGGA 59.889 55.000 0.00 0.00 34.64 4.69
391 392 0.111061 AAACCCCTACCCAAACGGAC 59.889 55.000 0.00 0.00 34.64 4.79
392 393 1.061324 AACCCCTACCCAAACGGACA 61.061 55.000 0.00 0.00 34.64 4.02
393 394 1.298667 CCCCTACCCAAACGGACAG 59.701 63.158 0.00 0.00 34.64 3.51
394 395 1.196104 CCCCTACCCAAACGGACAGA 61.196 60.000 0.00 0.00 34.64 3.41
395 396 0.688487 CCCTACCCAAACGGACAGAA 59.312 55.000 0.00 0.00 34.64 3.02
396 397 1.280998 CCCTACCCAAACGGACAGAAT 59.719 52.381 0.00 0.00 34.64 2.40
397 398 2.290705 CCCTACCCAAACGGACAGAATT 60.291 50.000 0.00 0.00 34.64 2.17
398 399 3.007635 CCTACCCAAACGGACAGAATTC 58.992 50.000 0.00 0.00 34.64 2.17
399 400 1.519408 ACCCAAACGGACAGAATTCG 58.481 50.000 0.00 0.00 34.64 3.34
400 401 0.802494 CCCAAACGGACAGAATTCGG 59.198 55.000 3.87 3.87 0.00 4.30
401 402 1.609580 CCCAAACGGACAGAATTCGGA 60.610 52.381 12.79 0.00 0.00 4.55
402 403 1.463444 CCAAACGGACAGAATTCGGAC 59.537 52.381 12.79 6.06 0.00 4.79
403 404 2.139917 CAAACGGACAGAATTCGGACA 58.860 47.619 12.79 0.00 0.00 4.02
404 405 2.536761 AACGGACAGAATTCGGACAA 57.463 45.000 12.79 0.00 0.00 3.18
405 406 2.536761 ACGGACAGAATTCGGACAAA 57.463 45.000 12.79 0.00 0.00 2.83
406 407 2.841215 ACGGACAGAATTCGGACAAAA 58.159 42.857 12.79 0.00 0.00 2.44
407 408 2.546789 ACGGACAGAATTCGGACAAAAC 59.453 45.455 12.79 0.00 0.00 2.43
408 409 2.411031 CGGACAGAATTCGGACAAAACG 60.411 50.000 12.79 1.93 0.00 3.60
409 410 2.095919 GGACAGAATTCGGACAAAACGG 60.096 50.000 12.79 0.00 0.00 4.44
410 411 2.803956 GACAGAATTCGGACAAAACGGA 59.196 45.455 12.79 0.00 0.00 4.69
411 412 2.546789 ACAGAATTCGGACAAAACGGAC 59.453 45.455 12.79 0.00 0.00 4.79
412 413 1.796459 AGAATTCGGACAAAACGGACG 59.204 47.619 0.00 0.00 0.00 4.79
413 414 1.528161 GAATTCGGACAAAACGGACGT 59.472 47.619 0.00 0.00 0.00 4.34
414 415 1.585297 ATTCGGACAAAACGGACGTT 58.415 45.000 3.99 3.99 40.45 3.99
415 416 0.929615 TTCGGACAAAACGGACGTTC 59.070 50.000 10.76 0.00 37.35 3.95
416 417 1.199859 CGGACAAAACGGACGTTCG 59.800 57.895 16.31 16.31 37.35 3.95
417 418 1.481819 CGGACAAAACGGACGTTCGT 61.482 55.000 18.05 18.05 46.08 3.85
423 424 2.280321 ACGGACGTTCGTTTGGGG 60.280 61.111 18.05 0.00 40.85 4.96
424 425 2.280321 CGGACGTTCGTTTGGGGT 60.280 61.111 8.45 0.00 0.00 4.95
425 426 2.312436 CGGACGTTCGTTTGGGGTC 61.312 63.158 8.45 0.00 0.00 4.46
426 427 2.312436 GGACGTTCGTTTGGGGTCG 61.312 63.158 0.00 0.00 0.00 4.79
427 428 2.946752 GACGTTCGTTTGGGGTCGC 61.947 63.158 0.00 0.00 0.00 5.19
428 429 3.719144 CGTTCGTTTGGGGTCGCC 61.719 66.667 0.00 0.00 0.00 5.54
429 430 3.359523 GTTCGTTTGGGGTCGCCC 61.360 66.667 3.03 6.38 44.51 6.13
430 431 4.992511 TTCGTTTGGGGTCGCCCG 62.993 66.667 3.03 0.07 46.66 6.13
433 434 3.666253 GTTTGGGGTCGCCCGTTG 61.666 66.667 3.03 0.00 46.66 4.10
434 435 4.958897 TTTGGGGTCGCCCGTTGG 62.959 66.667 3.03 0.00 46.66 3.77
451 452 1.629043 TGGAGTTGCTCTAAGGACGT 58.371 50.000 0.00 0.00 0.00 4.34
453 454 2.490903 TGGAGTTGCTCTAAGGACGTAC 59.509 50.000 0.00 0.00 0.00 3.67
535 536 1.023513 GCGCTTGTCAGCTGGAGATT 61.024 55.000 15.13 0.00 44.85 2.40
547 548 8.318412 TGTCAGCTGGAGATTAGTTTGTTTATA 58.682 33.333 15.13 0.00 0.00 0.98
548 549 8.604890 GTCAGCTGGAGATTAGTTTGTTTATAC 58.395 37.037 15.13 0.00 0.00 1.47
554 555 7.604927 TGGAGATTAGTTTGTTTATACGTTGCT 59.395 33.333 0.00 0.00 0.00 3.91
606 621 1.270550 GCCAGTGATGAACCAAACCAG 59.729 52.381 0.00 0.00 0.00 4.00
617 632 1.270839 ACCAAACCAGATCCTGACACG 60.271 52.381 0.00 0.00 32.44 4.49
652 671 3.788766 GCACGCACGTCCATCCAC 61.789 66.667 0.00 0.00 0.00 4.02
653 672 2.356913 CACGCACGTCCATCCACA 60.357 61.111 0.00 0.00 0.00 4.17
654 673 1.958715 CACGCACGTCCATCCACAA 60.959 57.895 0.00 0.00 0.00 3.33
688 743 1.672145 GGGGAGAGGAACGAAAACTCG 60.672 57.143 0.00 0.00 36.40 4.18
722 777 0.031994 ACAAAACCTGTTGCCATCGC 59.968 50.000 0.00 0.00 32.99 4.58
723 778 0.031857 CAAAACCTGTTGCCATCGCA 59.968 50.000 0.00 0.00 45.49 5.10
758 815 0.953003 CTCCGTCTAATCGTCCTCCC 59.047 60.000 0.00 0.00 0.00 4.30
792 849 3.345808 CCCACACACGCGGAACAG 61.346 66.667 12.47 0.00 0.00 3.16
821 880 1.060163 CCATACCCACCACCCCCTAG 61.060 65.000 0.00 0.00 0.00 3.02
883 959 2.014550 CAATCACCCCCATCCCCCT 61.015 63.158 0.00 0.00 0.00 4.79
885 961 3.757243 ATCACCCCCATCCCCCTCC 62.757 68.421 0.00 0.00 0.00 4.30
957 1059 1.153686 CTGCTTCTGCTGCTCGCTA 60.154 57.895 0.00 0.00 40.48 4.26
962 1064 2.271607 TTCTGCTGCTCGCTACTCCG 62.272 60.000 0.00 0.00 40.11 4.63
1053 1166 2.818714 CTGCTGCTTCTCGGCCTG 60.819 66.667 0.00 0.00 46.56 4.85
1124 1240 1.655329 CCGATCCGCTCTACAGGTC 59.345 63.158 0.00 0.00 0.00 3.85
1127 1243 0.031449 GATCCGCTCTACAGGTCAGC 59.969 60.000 0.00 0.00 0.00 4.26
1130 1246 1.608717 CCGCTCTACAGGTCAGCCTT 61.609 60.000 0.00 0.00 44.18 4.35
1134 1250 1.754226 CTCTACAGGTCAGCCTTCCTC 59.246 57.143 0.00 0.00 44.18 3.71
1156 1272 2.109181 CCCGAGATTTCCGCCCTC 59.891 66.667 0.00 0.00 0.00 4.30
1160 1276 1.146358 CGAGATTTCCGCCCTCGTTC 61.146 60.000 0.00 0.00 43.20 3.95
1167 1288 3.839432 CGCCCTCGTTCCCTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
1189 1310 4.941309 GTTGGGGGCGGTTCGTGT 62.941 66.667 0.00 0.00 0.00 4.49
1190 1311 4.629523 TTGGGGGCGGTTCGTGTC 62.630 66.667 0.00 0.00 0.00 3.67
1199 1344 2.048503 GTTCGTGTCCCTCCCGTG 60.049 66.667 0.00 0.00 0.00 4.94
1202 1347 4.415332 CGTGTCCCTCCCGTGTCG 62.415 72.222 0.00 0.00 0.00 4.35
1230 1375 1.489574 TTGCGTACGGTACAACAGTG 58.510 50.000 18.39 2.20 0.00 3.66
1232 1377 1.202394 TGCGTACGGTACAACAGTGTT 60.202 47.619 18.39 1.64 39.30 3.32
1233 1378 1.453148 GCGTACGGTACAACAGTGTTC 59.547 52.381 18.39 0.00 39.30 3.18
1239 1384 1.202557 GGTACAACAGTGTTCCGGACA 60.203 52.381 1.83 2.59 39.30 4.02
1240 1385 2.553086 GTACAACAGTGTTCCGGACAA 58.447 47.619 1.83 0.00 40.65 3.18
1241 1386 1.663695 ACAACAGTGTTCCGGACAAG 58.336 50.000 1.83 5.05 40.65 3.16
1243 1388 1.157870 AACAGTGTTCCGGACAAGCG 61.158 55.000 1.83 0.00 40.65 4.68
1244 1389 1.300620 CAGTGTTCCGGACAAGCGA 60.301 57.895 1.83 0.00 40.65 4.93
1245 1390 0.670546 CAGTGTTCCGGACAAGCGAT 60.671 55.000 1.83 0.00 40.65 4.58
1248 1393 2.032634 GTTCCGGACAAGCGATGCA 61.033 57.895 1.83 0.00 0.00 3.96
1251 1396 1.522355 CCGGACAAGCGATGCATCT 60.522 57.895 23.73 5.06 0.00 2.90
1253 1398 0.729116 CGGACAAGCGATGCATCTTT 59.271 50.000 23.73 14.92 0.00 2.52
1255 1400 1.739466 GGACAAGCGATGCATCTTTCA 59.261 47.619 23.73 0.00 0.00 2.69
1257 1402 1.470098 ACAAGCGATGCATCTTTCACC 59.530 47.619 23.73 5.82 0.00 4.02
1258 1403 0.729116 AAGCGATGCATCTTTCACCG 59.271 50.000 23.73 10.92 0.00 4.94
1259 1404 1.091771 AGCGATGCATCTTTCACCGG 61.092 55.000 23.73 0.00 0.00 5.28
1292 1497 9.791820 TTGATTGCTTGATTAACATTGATACTG 57.208 29.630 0.00 0.00 0.00 2.74
1293 1498 8.407832 TGATTGCTTGATTAACATTGATACTGG 58.592 33.333 0.00 0.00 0.00 4.00
1296 1501 8.208718 TGCTTGATTAACATTGATACTGGTAC 57.791 34.615 0.00 0.00 0.00 3.34
1297 1502 7.826744 TGCTTGATTAACATTGATACTGGTACA 59.173 33.333 0.00 0.00 0.00 2.90
1298 1503 8.122952 GCTTGATTAACATTGATACTGGTACAC 58.877 37.037 0.00 0.00 0.00 2.90
1299 1504 9.383519 CTTGATTAACATTGATACTGGTACACT 57.616 33.333 0.00 0.00 0.00 3.55
1300 1505 8.716646 TGATTAACATTGATACTGGTACACTG 57.283 34.615 0.00 0.00 0.00 3.66
1301 1506 7.768582 TGATTAACATTGATACTGGTACACTGG 59.231 37.037 0.00 0.00 0.00 4.00
1302 1507 5.499004 AACATTGATACTGGTACACTGGT 57.501 39.130 0.00 0.00 0.00 4.00
1312 1524 0.886563 GTACACTGGTACTGCCGAGT 59.113 55.000 0.00 0.00 45.19 4.18
1318 1530 2.895404 ACTGGTACTGCCGAGTTTTCTA 59.105 45.455 0.00 0.00 41.21 2.10
1325 1537 6.130166 TACTGCCGAGTTTTCTAGGGAACC 62.130 50.000 5.78 0.00 41.64 3.62
1341 1553 2.494870 GGAACCGGAGCTTCAACTAGTA 59.505 50.000 9.46 0.00 0.00 1.82
1342 1554 3.429135 GGAACCGGAGCTTCAACTAGTAG 60.429 52.174 9.46 0.00 0.00 2.57
1343 1555 2.805194 ACCGGAGCTTCAACTAGTAGT 58.195 47.619 9.46 0.00 0.00 2.73
1344 1556 3.960571 ACCGGAGCTTCAACTAGTAGTA 58.039 45.455 9.46 0.00 0.00 1.82
1345 1557 3.946558 ACCGGAGCTTCAACTAGTAGTAG 59.053 47.826 9.46 2.87 0.00 2.57
1346 1558 3.946558 CCGGAGCTTCAACTAGTAGTAGT 59.053 47.826 2.50 4.29 41.61 2.73
1350 1562 6.308282 CGGAGCTTCAACTAGTAGTAGTTTTG 59.692 42.308 18.49 10.80 45.62 2.44
1351 1563 7.153315 GGAGCTTCAACTAGTAGTAGTTTTGT 58.847 38.462 18.49 4.31 45.62 2.83
1365 1586 9.085250 GTAGTAGTTTTGTTAGTGATTAGAGCC 57.915 37.037 0.00 0.00 0.00 4.70
1387 1608 2.375146 GGAATATTTGCCCGTCCTGTT 58.625 47.619 0.00 0.00 0.00 3.16
1388 1609 2.099098 GGAATATTTGCCCGTCCTGTTG 59.901 50.000 0.00 0.00 0.00 3.33
1390 1611 2.107950 TATTTGCCCGTCCTGTTGAG 57.892 50.000 0.00 0.00 0.00 3.02
1391 1612 0.609131 ATTTGCCCGTCCTGTTGAGG 60.609 55.000 0.00 0.00 41.39 3.86
1392 1613 2.690653 TTTGCCCGTCCTGTTGAGGG 62.691 60.000 0.00 0.00 46.54 4.30
1393 1614 3.637273 GCCCGTCCTGTTGAGGGT 61.637 66.667 1.07 0.00 45.72 4.34
1394 1615 2.347490 CCCGTCCTGTTGAGGGTG 59.653 66.667 0.00 0.00 45.72 4.61
1395 1616 2.347490 CCGTCCTGTTGAGGGTGG 59.653 66.667 0.00 0.00 42.84 4.61
1396 1617 2.347490 CGTCCTGTTGAGGGTGGG 59.653 66.667 0.00 0.00 40.25 4.61
1398 1619 1.073199 GTCCTGTTGAGGGTGGGTG 59.927 63.158 0.00 0.00 40.25 4.61
1399 1620 1.385347 TCCTGTTGAGGGTGGGTGT 60.385 57.895 0.00 0.00 40.25 4.16
1400 1621 1.073199 CCTGTTGAGGGTGGGTGTC 59.927 63.158 0.00 0.00 35.40 3.67
1402 1623 0.401738 CTGTTGAGGGTGGGTGTCAT 59.598 55.000 0.00 0.00 0.00 3.06
1403 1624 0.110295 TGTTGAGGGTGGGTGTCATG 59.890 55.000 0.00 0.00 0.00 3.07
1404 1625 0.609131 GTTGAGGGTGGGTGTCATGG 60.609 60.000 0.00 0.00 0.00 3.66
1405 1626 1.788518 TTGAGGGTGGGTGTCATGGG 61.789 60.000 0.00 0.00 0.00 4.00
1406 1627 2.941025 AGGGTGGGTGTCATGGGG 60.941 66.667 0.00 0.00 0.00 4.96
1407 1628 2.938798 GGGTGGGTGTCATGGGGA 60.939 66.667 0.00 0.00 0.00 4.81
1438 1932 3.453717 TCCAGAGAGGACCAAGAATCATG 59.546 47.826 0.00 0.00 43.07 3.07
1567 2105 4.069312 TGGACCTGGAAACCTGTCTATA 57.931 45.455 0.00 0.00 0.00 1.31
1573 2111 7.310858 GGACCTGGAAACCTGTCTATAAACTAA 60.311 40.741 0.00 0.00 0.00 2.24
1702 2242 3.315470 CCATCATTCAGGAACATCAGCAG 59.685 47.826 0.00 0.00 0.00 4.24
1771 2459 3.918591 GCTTTGTGAAGATGTGCTGATTG 59.081 43.478 0.00 0.00 34.71 2.67
1773 2461 5.335113 GCTTTGTGAAGATGTGCTGATTGTA 60.335 40.000 0.00 0.00 34.71 2.41
1774 2462 5.868043 TTGTGAAGATGTGCTGATTGTAG 57.132 39.130 0.00 0.00 0.00 2.74
1791 2479 5.826601 TTGTAGTTTGTTCATGCAGTTCA 57.173 34.783 0.00 0.00 0.00 3.18
1849 2537 8.154856 TGCTAGTAGTTACTCATGTTTTCCTTT 58.845 33.333 0.00 0.00 37.73 3.11
1851 2539 9.930693 CTAGTAGTTACTCATGTTTTCCTTTCT 57.069 33.333 0.00 0.00 37.73 2.52
1854 2542 9.880064 GTAGTTACTCATGTTTTCCTTTCTTTC 57.120 33.333 0.00 0.00 0.00 2.62
1926 2615 5.808366 AGAGGATTCTGTCAAACACTGTA 57.192 39.130 0.00 0.00 30.72 2.74
1928 2617 6.402222 AGAGGATTCTGTCAAACACTGTATC 58.598 40.000 0.00 0.00 32.90 2.24
2205 2897 8.450578 AATTTTCTGTCTCATGTTCACTTACA 57.549 30.769 0.00 0.00 0.00 2.41
2332 3029 1.142748 CAAGCTACCTCTCAGGCCG 59.857 63.158 0.00 0.00 39.63 6.13
2440 3137 6.759356 CCATATATCACAGTTGGTACGTTCAA 59.241 38.462 0.00 0.00 0.00 2.69
2466 3163 7.283580 AGTCTAGCAGTCTACGTTTTCAGATAT 59.716 37.037 0.00 0.00 0.00 1.63
2469 3166 6.037098 AGCAGTCTACGTTTTCAGATATGTC 58.963 40.000 0.00 0.00 0.00 3.06
2508 3205 0.183014 ATCCAGCTTGGCCATCTCTG 59.817 55.000 6.09 14.02 37.47 3.35
2586 3283 2.915869 TGGTTACTCCCTCATCTTGGT 58.084 47.619 0.00 0.00 34.77 3.67
2672 3369 3.123050 GCTTTTGTGACAACCCACATTC 58.877 45.455 0.00 0.00 45.31 2.67
2782 3479 5.314923 TGCAGTTAAATTCTGAGATTGGC 57.685 39.130 0.00 0.00 35.20 4.52
2794 3491 1.003580 GAGATTGGCACTTCCTGGTGA 59.996 52.381 0.00 0.00 39.34 4.02
2813 3510 7.156876 TGGTGATAGTGCTGGAAATTAAAAG 57.843 36.000 0.00 0.00 0.00 2.27
2814 3511 6.945435 TGGTGATAGTGCTGGAAATTAAAAGA 59.055 34.615 0.00 0.00 0.00 2.52
2830 3527 2.861147 AAGACTTGGCTGTCCTAACC 57.139 50.000 7.41 0.00 37.66 2.85
2831 3528 2.031495 AGACTTGGCTGTCCTAACCT 57.969 50.000 7.41 0.00 37.66 3.50
2884 3581 1.127766 TGCACTGTTATTAGCGTTGCG 59.872 47.619 0.00 0.00 0.00 4.85
2914 3611 4.269523 TGGACAGTGTGGGCTGCC 62.270 66.667 11.05 11.05 39.96 4.85
2917 3614 1.604593 GACAGTGTGGGCTGCCATT 60.605 57.895 22.05 0.00 39.96 3.16
2956 3653 3.196613 GAAGGTCGTCTTCGTTGCT 57.803 52.632 5.76 0.00 41.95 3.91
2975 3672 0.681887 TATCGGCGGTGTCCTCTCAA 60.682 55.000 7.21 0.00 0.00 3.02
3025 3722 2.553028 GCGATGGGGATATGTTGATGGT 60.553 50.000 0.00 0.00 0.00 3.55
3061 3758 1.763770 CATGGCTATCCCCCTGTCC 59.236 63.158 0.00 0.00 0.00 4.02
3158 3855 2.159517 GCTTCGCCAGACCAAATACTTG 60.160 50.000 0.00 0.00 0.00 3.16
3171 3868 4.021192 CCAAATACTTGCATCTTTGGTGGT 60.021 41.667 16.00 0.00 41.64 4.16
3214 3911 5.439721 TCCACTCATCCAATGTAAAGATGG 58.560 41.667 0.00 0.00 38.33 3.51
3299 3996 1.134965 CCTCAGCTCAGGAGGTTTACG 60.135 57.143 0.00 0.00 45.59 3.18
3489 4276 1.818060 CCGTGGGATTCTCAAAATGCA 59.182 47.619 0.00 0.00 0.00 3.96
3504 4291 9.643693 TCTCAAAATGCAGGAATAGAAAAATTC 57.356 29.630 0.00 0.00 35.51 2.17
3505 4292 9.649167 CTCAAAATGCAGGAATAGAAAAATTCT 57.351 29.630 0.00 0.00 43.72 2.40
3630 4426 3.692257 ACAGAGAGGTTTGAGTGGATG 57.308 47.619 0.00 0.00 0.00 3.51
3637 4433 6.432472 AGAGAGGTTTGAGTGGATGATTTTTC 59.568 38.462 0.00 0.00 0.00 2.29
3651 4448 8.522830 TGGATGATTTTTCTTCTCCAAATGTAC 58.477 33.333 0.00 0.00 30.15 2.90
3678 4475 6.095440 ACAAATGAATCCTATGGAAAACTCCG 59.905 38.462 0.00 0.00 34.34 4.63
3752 4549 7.983484 CCTAAAGATCCAAATCCTCCAAAAATG 59.017 37.037 0.00 0.00 31.78 2.32
3782 4637 7.233348 TGAAATTTCTTTGTATGAAAGGAGCCT 59.767 33.333 18.64 0.00 36.94 4.58
3796 4651 3.597255 AGGAGCCTTAAAAAGCGTCTAC 58.403 45.455 0.00 0.00 0.00 2.59
3813 4668 9.758651 AAGCGTCTACATTTATTACATATGTCA 57.241 29.630 12.68 0.98 34.55 3.58
3920 4778 2.556622 AGCTAATTTTGTTGTCCCCACG 59.443 45.455 0.00 0.00 0.00 4.94
4098 5175 3.304928 GGAGCAAAATAATGGATGCCTCG 60.305 47.826 0.00 0.00 39.59 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.160821 CCGATCGGATGACCTAGTTCAGG 62.161 56.522 30.62 0.00 43.84 3.86
21 22 2.030717 CCGATCGGATGACCTAGTTCAG 60.031 54.545 30.62 0.00 37.50 3.02
22 23 1.954382 CCGATCGGATGACCTAGTTCA 59.046 52.381 30.62 0.00 37.50 3.18
23 24 1.336056 GCCGATCGGATGACCTAGTTC 60.336 57.143 37.64 11.24 37.50 3.01
24 25 0.674534 GCCGATCGGATGACCTAGTT 59.325 55.000 37.64 0.00 37.50 2.24
25 26 1.516365 CGCCGATCGGATGACCTAGT 61.516 60.000 37.64 0.00 37.50 2.57
26 27 1.210413 CGCCGATCGGATGACCTAG 59.790 63.158 37.64 12.67 37.50 3.02
27 28 1.527611 ACGCCGATCGGATGACCTA 60.528 57.895 37.64 0.00 43.86 3.08
28 29 2.833582 ACGCCGATCGGATGACCT 60.834 61.111 37.64 10.22 43.86 3.85
29 30 2.658593 CACGCCGATCGGATGACC 60.659 66.667 37.64 17.98 43.86 4.02
30 31 2.658593 CCACGCCGATCGGATGAC 60.659 66.667 37.64 18.37 43.86 3.06
31 32 4.585526 GCCACGCCGATCGGATGA 62.586 66.667 37.64 0.00 43.86 2.92
41 42 2.725641 AAAAAGAACGGCCACGCC 59.274 55.556 2.24 0.00 46.75 5.68
55 56 1.265236 CACCCATGCCAGCCTAAAAA 58.735 50.000 0.00 0.00 0.00 1.94
56 57 1.257055 GCACCCATGCCAGCCTAAAA 61.257 55.000 0.00 0.00 46.97 1.52
57 58 1.682005 GCACCCATGCCAGCCTAAA 60.682 57.895 0.00 0.00 46.97 1.85
58 59 2.044053 GCACCCATGCCAGCCTAA 60.044 61.111 0.00 0.00 46.97 2.69
88 89 4.778143 CACACTACCAGCGGCCCC 62.778 72.222 0.00 0.00 0.00 5.80
95 96 3.989698 CTCGCCGGCACACTACCAG 62.990 68.421 28.98 6.54 0.00 4.00
96 97 4.063967 CTCGCCGGCACACTACCA 62.064 66.667 28.98 0.00 0.00 3.25
97 98 2.775032 TTTCTCGCCGGCACACTACC 62.775 60.000 28.98 0.00 0.00 3.18
98 99 0.947180 TTTTCTCGCCGGCACACTAC 60.947 55.000 28.98 0.00 0.00 2.73
99 100 0.947180 GTTTTCTCGCCGGCACACTA 60.947 55.000 28.98 5.22 0.00 2.74
100 101 2.110213 TTTTCTCGCCGGCACACT 59.890 55.556 28.98 0.00 0.00 3.55
101 102 1.852067 ATGTTTTCTCGCCGGCACAC 61.852 55.000 28.98 10.64 0.00 3.82
102 103 1.169661 AATGTTTTCTCGCCGGCACA 61.170 50.000 28.98 22.01 0.00 4.57
103 104 0.454452 GAATGTTTTCTCGCCGGCAC 60.454 55.000 28.98 16.51 0.00 5.01
104 105 0.886938 TGAATGTTTTCTCGCCGGCA 60.887 50.000 28.98 12.94 32.78 5.69
105 106 0.451783 ATGAATGTTTTCTCGCCGGC 59.548 50.000 19.07 19.07 32.78 6.13
106 107 2.919666 AATGAATGTTTTCTCGCCGG 57.080 45.000 0.00 0.00 32.78 6.13
107 108 3.364621 CCAAAATGAATGTTTTCTCGCCG 59.635 43.478 0.00 0.00 32.78 6.46
108 109 4.555262 TCCAAAATGAATGTTTTCTCGCC 58.445 39.130 0.00 0.00 32.78 5.54
109 110 4.622740 CCTCCAAAATGAATGTTTTCTCGC 59.377 41.667 0.00 0.00 32.78 5.03
110 111 4.622740 GCCTCCAAAATGAATGTTTTCTCG 59.377 41.667 0.00 0.00 32.78 4.04
111 112 4.931601 GGCCTCCAAAATGAATGTTTTCTC 59.068 41.667 0.00 0.00 32.78 2.87
112 113 4.561326 CGGCCTCCAAAATGAATGTTTTCT 60.561 41.667 0.00 0.00 32.78 2.52
113 114 3.679502 CGGCCTCCAAAATGAATGTTTTC 59.320 43.478 0.00 0.00 0.00 2.29
114 115 3.556843 CCGGCCTCCAAAATGAATGTTTT 60.557 43.478 0.00 0.00 0.00 2.43
115 116 2.028203 CCGGCCTCCAAAATGAATGTTT 60.028 45.455 0.00 0.00 0.00 2.83
116 117 1.550072 CCGGCCTCCAAAATGAATGTT 59.450 47.619 0.00 0.00 0.00 2.71
117 118 1.185315 CCGGCCTCCAAAATGAATGT 58.815 50.000 0.00 0.00 0.00 2.71
118 119 0.179103 GCCGGCCTCCAAAATGAATG 60.179 55.000 18.11 0.00 0.00 2.67
119 120 0.324645 AGCCGGCCTCCAAAATGAAT 60.325 50.000 26.15 0.00 0.00 2.57
120 121 1.076549 AGCCGGCCTCCAAAATGAA 59.923 52.632 26.15 0.00 0.00 2.57
121 122 1.678635 CAGCCGGCCTCCAAAATGA 60.679 57.895 26.15 0.00 0.00 2.57
122 123 1.978617 ACAGCCGGCCTCCAAAATG 60.979 57.895 26.15 15.05 0.00 2.32
123 124 1.978617 CACAGCCGGCCTCCAAAAT 60.979 57.895 26.15 0.00 0.00 1.82
124 125 2.597217 CACAGCCGGCCTCCAAAA 60.597 61.111 26.15 0.00 0.00 2.44
125 126 3.429372 AACACAGCCGGCCTCCAAA 62.429 57.895 26.15 0.00 0.00 3.28
126 127 3.884774 AACACAGCCGGCCTCCAA 61.885 61.111 26.15 0.00 0.00 3.53
127 128 4.641645 CAACACAGCCGGCCTCCA 62.642 66.667 26.15 0.00 0.00 3.86
156 157 4.680237 TCCTCGCCGGCAACACAG 62.680 66.667 28.98 12.94 0.00 3.66
157 158 4.680237 CTCCTCGCCGGCAACACA 62.680 66.667 28.98 4.43 0.00 3.72
158 159 3.876589 TTCTCCTCGCCGGCAACAC 62.877 63.158 28.98 0.00 0.00 3.32
159 160 3.621805 TTCTCCTCGCCGGCAACA 61.622 61.111 28.98 8.56 0.00 3.33
160 161 2.221906 TAGTTCTCCTCGCCGGCAAC 62.222 60.000 28.98 21.22 0.00 4.17
161 162 1.327690 ATAGTTCTCCTCGCCGGCAA 61.328 55.000 28.98 7.25 0.00 4.52
162 163 1.327690 AATAGTTCTCCTCGCCGGCA 61.328 55.000 28.98 12.94 0.00 5.69
163 164 0.597898 GAATAGTTCTCCTCGCCGGC 60.598 60.000 19.07 19.07 0.00 6.13
164 165 0.317938 CGAATAGTTCTCCTCGCCGG 60.318 60.000 0.00 0.00 0.00 6.13
165 166 0.381089 ACGAATAGTTCTCCTCGCCG 59.619 55.000 0.00 0.00 34.70 6.46
166 167 2.580966 AACGAATAGTTCTCCTCGCC 57.419 50.000 0.00 0.00 39.16 5.54
167 168 3.062234 CCAAAACGAATAGTTCTCCTCGC 59.938 47.826 0.00 0.00 43.37 5.03
168 169 4.491676 TCCAAAACGAATAGTTCTCCTCG 58.508 43.478 0.00 0.00 43.37 4.63
169 170 4.870991 CCTCCAAAACGAATAGTTCTCCTC 59.129 45.833 0.00 0.00 43.37 3.71
170 171 4.833390 CCTCCAAAACGAATAGTTCTCCT 58.167 43.478 0.00 0.00 43.37 3.69
171 172 3.374367 GCCTCCAAAACGAATAGTTCTCC 59.626 47.826 0.00 0.00 43.37 3.71
172 173 4.093556 CAGCCTCCAAAACGAATAGTTCTC 59.906 45.833 0.00 0.00 43.37 2.87
173 174 4.003648 CAGCCTCCAAAACGAATAGTTCT 58.996 43.478 0.00 0.00 43.37 3.01
174 175 3.127030 CCAGCCTCCAAAACGAATAGTTC 59.873 47.826 0.00 0.00 43.37 3.01
175 176 3.081804 CCAGCCTCCAAAACGAATAGTT 58.918 45.455 0.00 0.00 46.76 2.24
176 177 2.711542 CCAGCCTCCAAAACGAATAGT 58.288 47.619 0.00 0.00 0.00 2.12
177 178 1.401905 GCCAGCCTCCAAAACGAATAG 59.598 52.381 0.00 0.00 0.00 1.73
178 179 1.004277 AGCCAGCCTCCAAAACGAATA 59.996 47.619 0.00 0.00 0.00 1.75
179 180 0.251341 AGCCAGCCTCCAAAACGAAT 60.251 50.000 0.00 0.00 0.00 3.34
180 181 1.150536 AGCCAGCCTCCAAAACGAA 59.849 52.632 0.00 0.00 0.00 3.85
181 182 1.600636 CAGCCAGCCTCCAAAACGA 60.601 57.895 0.00 0.00 0.00 3.85
182 183 1.898574 ACAGCCAGCCTCCAAAACG 60.899 57.895 0.00 0.00 0.00 3.60
183 184 1.109323 ACACAGCCAGCCTCCAAAAC 61.109 55.000 0.00 0.00 0.00 2.43
184 185 0.396974 AACACAGCCAGCCTCCAAAA 60.397 50.000 0.00 0.00 0.00 2.44
185 186 1.108727 CAACACAGCCAGCCTCCAAA 61.109 55.000 0.00 0.00 0.00 3.28
186 187 1.529010 CAACACAGCCAGCCTCCAA 60.529 57.895 0.00 0.00 0.00 3.53
187 188 2.113774 CAACACAGCCAGCCTCCA 59.886 61.111 0.00 0.00 0.00 3.86
188 189 3.368571 GCAACACAGCCAGCCTCC 61.369 66.667 0.00 0.00 0.00 4.30
215 216 4.916293 TCCATCGCCGGCATCAGC 62.916 66.667 28.98 0.00 41.10 4.26
216 217 2.969238 GTCCATCGCCGGCATCAG 60.969 66.667 28.98 12.41 0.00 2.90
217 218 4.889856 CGTCCATCGCCGGCATCA 62.890 66.667 28.98 10.08 0.00 3.07
218 219 4.891727 ACGTCCATCGCCGGCATC 62.892 66.667 28.98 8.26 44.19 3.91
221 222 4.501714 TACACGTCCATCGCCGGC 62.502 66.667 19.07 19.07 44.19 6.13
222 223 2.278596 CTACACGTCCATCGCCGG 60.279 66.667 0.00 0.00 44.19 6.13
223 224 2.278596 CCTACACGTCCATCGCCG 60.279 66.667 0.00 0.00 44.19 6.46
224 225 2.106332 CCCTACACGTCCATCGCC 59.894 66.667 0.00 0.00 44.19 5.54
225 226 2.585247 GCCCTACACGTCCATCGC 60.585 66.667 0.00 0.00 44.19 4.58
226 227 2.278596 CGCCCTACACGTCCATCG 60.279 66.667 0.00 0.00 46.00 3.84
227 228 2.106332 CCGCCCTACACGTCCATC 59.894 66.667 0.00 0.00 0.00 3.51
228 229 4.157120 GCCGCCCTACACGTCCAT 62.157 66.667 0.00 0.00 0.00 3.41
233 234 4.508128 ATCACGCCGCCCTACACG 62.508 66.667 0.00 0.00 0.00 4.49
234 235 2.845752 TTCATCACGCCGCCCTACAC 62.846 60.000 0.00 0.00 0.00 2.90
235 236 2.651105 TTCATCACGCCGCCCTACA 61.651 57.895 0.00 0.00 0.00 2.74
236 237 2.171725 GTTCATCACGCCGCCCTAC 61.172 63.158 0.00 0.00 0.00 3.18
237 238 2.185867 GTTCATCACGCCGCCCTA 59.814 61.111 0.00 0.00 0.00 3.53
238 239 4.778143 GGTTCATCACGCCGCCCT 62.778 66.667 0.00 0.00 0.00 5.19
243 244 4.090588 TCCCCGGTTCATCACGCC 62.091 66.667 0.00 0.00 0.00 5.68
244 245 2.818274 GTCCCCGGTTCATCACGC 60.818 66.667 0.00 0.00 0.00 5.34
245 246 2.508439 CGTCCCCGGTTCATCACG 60.508 66.667 0.00 0.00 0.00 4.35
246 247 2.818274 GCGTCCCCGGTTCATCAC 60.818 66.667 0.00 0.00 33.68 3.06
247 248 3.000819 AGCGTCCCCGGTTCATCA 61.001 61.111 0.00 0.00 43.33 3.07
248 249 2.511600 CAGCGTCCCCGGTTCATC 60.512 66.667 0.00 0.00 43.33 2.92
249 250 4.096003 CCAGCGTCCCCGGTTCAT 62.096 66.667 0.00 0.00 43.33 2.57
255 256 2.587322 TAATTCAGCCAGCGTCCCCG 62.587 60.000 0.00 0.00 37.07 5.73
256 257 0.815615 CTAATTCAGCCAGCGTCCCC 60.816 60.000 0.00 0.00 0.00 4.81
257 258 0.107654 ACTAATTCAGCCAGCGTCCC 60.108 55.000 0.00 0.00 0.00 4.46
258 259 1.739067 AACTAATTCAGCCAGCGTCC 58.261 50.000 0.00 0.00 0.00 4.79
259 260 3.831715 AAAACTAATTCAGCCAGCGTC 57.168 42.857 0.00 0.00 0.00 5.19
277 278 2.817258 CCTGTCCGCATCCACTTAAAAA 59.183 45.455 0.00 0.00 0.00 1.94
278 279 2.039216 TCCTGTCCGCATCCACTTAAAA 59.961 45.455 0.00 0.00 0.00 1.52
279 280 1.626321 TCCTGTCCGCATCCACTTAAA 59.374 47.619 0.00 0.00 0.00 1.52
280 281 1.271856 TCCTGTCCGCATCCACTTAA 58.728 50.000 0.00 0.00 0.00 1.85
281 282 1.138859 CATCCTGTCCGCATCCACTTA 59.861 52.381 0.00 0.00 0.00 2.24
282 283 0.107508 CATCCTGTCCGCATCCACTT 60.108 55.000 0.00 0.00 0.00 3.16
283 284 1.524002 CATCCTGTCCGCATCCACT 59.476 57.895 0.00 0.00 0.00 4.00
284 285 1.524621 CCATCCTGTCCGCATCCAC 60.525 63.158 0.00 0.00 0.00 4.02
285 286 2.745308 CCCATCCTGTCCGCATCCA 61.745 63.158 0.00 0.00 0.00 3.41
286 287 2.111878 CCCATCCTGTCCGCATCC 59.888 66.667 0.00 0.00 0.00 3.51
287 288 2.111878 CCCCATCCTGTCCGCATC 59.888 66.667 0.00 0.00 0.00 3.91
288 289 4.195334 GCCCCATCCTGTCCGCAT 62.195 66.667 0.00 0.00 0.00 4.73
290 291 3.936772 TTTGCCCCATCCTGTCCGC 62.937 63.158 0.00 0.00 0.00 5.54
291 292 1.076777 ATTTGCCCCATCCTGTCCG 60.077 57.895 0.00 0.00 0.00 4.79
292 293 1.044790 CCATTTGCCCCATCCTGTCC 61.045 60.000 0.00 0.00 0.00 4.02
293 294 0.033208 TCCATTTGCCCCATCCTGTC 60.033 55.000 0.00 0.00 0.00 3.51
294 295 0.638292 ATCCATTTGCCCCATCCTGT 59.362 50.000 0.00 0.00 0.00 4.00
295 296 1.045407 CATCCATTTGCCCCATCCTG 58.955 55.000 0.00 0.00 0.00 3.86
296 297 0.761702 GCATCCATTTGCCCCATCCT 60.762 55.000 0.00 0.00 36.60 3.24
297 298 1.750297 GCATCCATTTGCCCCATCC 59.250 57.895 0.00 0.00 36.60 3.51
298 299 1.364901 CGCATCCATTTGCCCCATC 59.635 57.895 0.00 0.00 39.52 3.51
299 300 2.135581 CCGCATCCATTTGCCCCAT 61.136 57.895 0.00 0.00 39.52 4.00
300 301 2.759149 CCGCATCCATTTGCCCCA 60.759 61.111 0.00 0.00 39.52 4.96
301 302 4.225703 GCCGCATCCATTTGCCCC 62.226 66.667 0.00 0.00 39.52 5.80
302 303 4.225703 GGCCGCATCCATTTGCCC 62.226 66.667 0.00 0.00 39.52 5.36
303 304 4.573950 CGGCCGCATCCATTTGCC 62.574 66.667 14.67 0.00 39.52 4.52
305 306 4.910722 CGCGGCCGCATCCATTTG 62.911 66.667 45.26 25.41 42.06 2.32
337 338 3.716195 TGTCCTGGGATGCGGTGG 61.716 66.667 0.00 0.00 0.00 4.61
338 339 2.436646 GTGTCCTGGGATGCGGTG 60.437 66.667 0.00 0.00 0.00 4.94
339 340 4.082523 CGTGTCCTGGGATGCGGT 62.083 66.667 0.00 0.00 0.00 5.68
343 344 4.838152 CGGGCGTGTCCTGGGATG 62.838 72.222 0.00 0.00 37.58 3.51
363 364 3.653078 TAGGGGTTTGGGGCCGTG 61.653 66.667 0.00 0.00 0.00 4.94
364 365 3.654143 GTAGGGGTTTGGGGCCGT 61.654 66.667 0.00 0.00 0.00 5.68
365 366 4.435970 GGTAGGGGTTTGGGGCCG 62.436 72.222 0.00 0.00 0.00 6.13
366 367 4.070265 GGGTAGGGGTTTGGGGCC 62.070 72.222 0.00 0.00 0.00 5.80
367 368 2.389313 TTTGGGTAGGGGTTTGGGGC 62.389 60.000 0.00 0.00 0.00 5.80
368 369 0.543410 GTTTGGGTAGGGGTTTGGGG 60.543 60.000 0.00 0.00 0.00 4.96
369 370 0.896479 CGTTTGGGTAGGGGTTTGGG 60.896 60.000 0.00 0.00 0.00 4.12
370 371 0.896479 CCGTTTGGGTAGGGGTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
371 372 0.110869 TCCGTTTGGGTAGGGGTTTG 59.889 55.000 0.00 0.00 37.00 2.93
372 373 0.111061 GTCCGTTTGGGTAGGGGTTT 59.889 55.000 0.00 0.00 37.00 3.27
373 374 1.061324 TGTCCGTTTGGGTAGGGGTT 61.061 55.000 0.00 0.00 37.00 4.11
374 375 1.461849 TGTCCGTTTGGGTAGGGGT 60.462 57.895 0.00 0.00 37.00 4.95
375 376 1.196104 TCTGTCCGTTTGGGTAGGGG 61.196 60.000 0.00 0.00 37.00 4.79
376 377 0.688487 TTCTGTCCGTTTGGGTAGGG 59.312 55.000 0.00 0.00 37.00 3.53
377 378 2.781681 ATTCTGTCCGTTTGGGTAGG 57.218 50.000 0.00 0.00 37.00 3.18
378 379 2.671396 CGAATTCTGTCCGTTTGGGTAG 59.329 50.000 3.52 0.00 37.00 3.18
379 380 2.613474 CCGAATTCTGTCCGTTTGGGTA 60.613 50.000 3.52 0.00 37.00 3.69
380 381 1.519408 CGAATTCTGTCCGTTTGGGT 58.481 50.000 3.52 0.00 37.00 4.51
381 382 0.802494 CCGAATTCTGTCCGTTTGGG 59.198 55.000 3.52 0.00 35.24 4.12
382 383 1.463444 GTCCGAATTCTGTCCGTTTGG 59.537 52.381 3.52 0.00 0.00 3.28
383 384 2.139917 TGTCCGAATTCTGTCCGTTTG 58.860 47.619 3.52 0.00 0.00 2.93
384 385 2.536761 TGTCCGAATTCTGTCCGTTT 57.463 45.000 3.52 0.00 0.00 3.60
385 386 2.536761 TTGTCCGAATTCTGTCCGTT 57.463 45.000 3.52 0.00 0.00 4.44
386 387 2.536761 TTTGTCCGAATTCTGTCCGT 57.463 45.000 3.52 0.00 0.00 4.69
387 388 2.411031 CGTTTTGTCCGAATTCTGTCCG 60.411 50.000 3.52 0.00 0.00 4.79
388 389 2.095919 CCGTTTTGTCCGAATTCTGTCC 60.096 50.000 3.52 0.00 0.00 4.02
389 390 2.803956 TCCGTTTTGTCCGAATTCTGTC 59.196 45.455 3.52 0.00 0.00 3.51
390 391 2.546789 GTCCGTTTTGTCCGAATTCTGT 59.453 45.455 3.52 0.00 0.00 3.41
391 392 2.411031 CGTCCGTTTTGTCCGAATTCTG 60.411 50.000 3.52 0.00 0.00 3.02
392 393 1.796459 CGTCCGTTTTGTCCGAATTCT 59.204 47.619 3.52 0.00 0.00 2.40
393 394 1.528161 ACGTCCGTTTTGTCCGAATTC 59.472 47.619 0.00 0.00 0.00 2.17
394 395 1.585297 ACGTCCGTTTTGTCCGAATT 58.415 45.000 0.00 0.00 0.00 2.17
395 396 1.528161 GAACGTCCGTTTTGTCCGAAT 59.472 47.619 6.52 0.00 38.60 3.34
396 397 0.929615 GAACGTCCGTTTTGTCCGAA 59.070 50.000 6.52 0.00 38.60 4.30
397 398 1.208009 CGAACGTCCGTTTTGTCCGA 61.208 55.000 6.52 0.00 38.60 4.55
398 399 1.199859 CGAACGTCCGTTTTGTCCG 59.800 57.895 6.52 1.71 38.60 4.79
399 400 2.300533 ACGAACGTCCGTTTTGTCC 58.699 52.632 0.00 0.00 40.17 4.02
406 407 2.280321 CCCCAAACGAACGTCCGT 60.280 61.111 0.00 0.00 45.64 4.69
407 408 2.280321 ACCCCAAACGAACGTCCG 60.280 61.111 0.00 0.00 0.00 4.79
408 409 2.312436 CGACCCCAAACGAACGTCC 61.312 63.158 0.00 0.00 0.00 4.79
409 410 2.946752 GCGACCCCAAACGAACGTC 61.947 63.158 0.00 0.00 0.00 4.34
410 411 2.968697 GCGACCCCAAACGAACGT 60.969 61.111 0.00 0.00 0.00 3.99
411 412 3.719144 GGCGACCCCAAACGAACG 61.719 66.667 0.00 0.00 0.00 3.95
423 424 3.723348 GCAACTCCAACGGGCGAC 61.723 66.667 0.00 0.00 0.00 5.19
424 425 3.876589 GAGCAACTCCAACGGGCGA 62.877 63.158 0.00 0.00 0.00 5.54
425 426 2.501223 TAGAGCAACTCCAACGGGCG 62.501 60.000 0.00 0.00 0.00 6.13
426 427 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
427 428 1.676014 CCTTAGAGCAACTCCAACGGG 60.676 57.143 0.00 0.00 0.00 5.28
428 429 1.275291 TCCTTAGAGCAACTCCAACGG 59.725 52.381 0.00 0.00 0.00 4.44
429 430 2.338500 GTCCTTAGAGCAACTCCAACG 58.662 52.381 0.00 0.00 0.00 4.10
430 431 2.288886 ACGTCCTTAGAGCAACTCCAAC 60.289 50.000 0.00 0.00 0.00 3.77
431 432 1.968493 ACGTCCTTAGAGCAACTCCAA 59.032 47.619 0.00 0.00 0.00 3.53
432 433 1.629043 ACGTCCTTAGAGCAACTCCA 58.371 50.000 0.00 0.00 0.00 3.86
433 434 2.477525 CGTACGTCCTTAGAGCAACTCC 60.478 54.545 7.22 0.00 0.00 3.85
434 435 2.477525 CCGTACGTCCTTAGAGCAACTC 60.478 54.545 15.21 0.00 0.00 3.01
451 452 0.916086 ATTTCACATGCCCCTCCGTA 59.084 50.000 0.00 0.00 0.00 4.02
453 454 1.308998 GTATTTCACATGCCCCTCCG 58.691 55.000 0.00 0.00 0.00 4.63
501 502 2.520982 CGCAGGTCGAGGGGGATA 60.521 66.667 0.00 0.00 41.67 2.59
535 536 5.409214 GGTGGAGCAACGTATAAACAAACTA 59.591 40.000 0.00 0.00 0.00 2.24
547 548 2.932234 CGAGGAGGTGGAGCAACGT 61.932 63.158 0.00 0.00 0.00 3.99
548 549 2.125912 CGAGGAGGTGGAGCAACG 60.126 66.667 0.00 0.00 0.00 4.10
581 582 2.048603 GGTTCATCACTGGCCCAGC 61.049 63.158 11.63 0.00 34.37 4.85
584 585 0.603065 GTTTGGTTCATCACTGGCCC 59.397 55.000 0.00 0.00 0.00 5.80
585 586 0.603065 GGTTTGGTTCATCACTGGCC 59.397 55.000 0.00 0.00 0.00 5.36
588 589 3.441572 GGATCTGGTTTGGTTCATCACTG 59.558 47.826 0.00 0.00 0.00 3.66
589 590 3.331889 AGGATCTGGTTTGGTTCATCACT 59.668 43.478 0.00 0.00 0.00 3.41
590 591 3.441572 CAGGATCTGGTTTGGTTCATCAC 59.558 47.826 0.00 0.00 0.00 3.06
591 592 3.330405 TCAGGATCTGGTTTGGTTCATCA 59.670 43.478 0.00 0.00 31.51 3.07
592 593 3.691609 GTCAGGATCTGGTTTGGTTCATC 59.308 47.826 0.00 0.00 31.51 2.92
595 596 2.814336 GTGTCAGGATCTGGTTTGGTTC 59.186 50.000 0.00 0.00 31.51 3.62
606 621 1.363744 CTTCTTGGCGTGTCAGGATC 58.636 55.000 0.00 0.00 0.00 3.36
634 653 4.002506 TGGATGGACGTGCGTGCT 62.003 61.111 20.56 3.34 37.36 4.40
671 726 3.285816 ACTCGAGTTTTCGTTCCTCTC 57.714 47.619 13.58 0.00 46.72 3.20
673 728 7.043524 GGATATTTACTCGAGTTTTCGTTCCTC 60.044 40.741 25.44 9.04 46.72 3.71
674 729 6.755607 GGATATTTACTCGAGTTTTCGTTCCT 59.244 38.462 25.44 0.00 46.72 3.36
676 731 6.291479 CGGGATATTTACTCGAGTTTTCGTTC 60.291 42.308 25.44 13.36 46.72 3.95
678 733 5.039333 CGGGATATTTACTCGAGTTTTCGT 58.961 41.667 25.44 7.77 46.72 3.85
680 735 6.532657 TGTTCGGGATATTTACTCGAGTTTTC 59.467 38.462 25.44 10.28 41.23 2.29
681 736 6.400568 TGTTCGGGATATTTACTCGAGTTTT 58.599 36.000 25.44 11.32 41.23 2.43
688 743 6.373495 ACAGGTTTTGTTCGGGATATTTACTC 59.627 38.462 0.00 0.00 36.31 2.59
722 777 2.111878 GGCCCCCTGATCGATGTG 59.888 66.667 0.54 0.00 0.00 3.21
723 778 2.040464 AGGCCCCCTGATCGATGT 60.040 61.111 0.54 0.00 29.57 3.06
725 780 2.527875 GGAGGCCCCCTGATCGAT 60.528 66.667 0.00 0.00 31.76 3.59
729 784 2.252012 TTAGACGGAGGCCCCCTGAT 62.252 60.000 0.11 0.00 31.76 2.90
732 787 1.459730 GATTAGACGGAGGCCCCCT 60.460 63.158 0.11 0.00 36.03 4.79
735 790 1.363080 GACGATTAGACGGAGGCCC 59.637 63.158 0.00 0.00 37.61 5.80
758 815 4.225497 GGGGGAGCAAATCGACAG 57.775 61.111 0.00 0.00 0.00 3.51
792 849 3.756963 GTGGTGGGTATGGTTTTTCTCTC 59.243 47.826 0.00 0.00 0.00 3.20
883 959 0.757561 TAATCCACGCGAGATGGGGA 60.758 55.000 15.93 9.92 37.85 4.81
885 961 1.800586 CATTAATCCACGCGAGATGGG 59.199 52.381 15.93 6.13 37.85 4.00
1038 1151 4.400961 ACCAGGCCGAGAAGCAGC 62.401 66.667 0.00 0.00 0.00 5.25
1041 1154 4.021925 ACCACCAGGCCGAGAAGC 62.022 66.667 0.00 0.00 39.06 3.86
1124 1240 3.093172 GGGGAGGGAGGAAGGCTG 61.093 72.222 0.00 0.00 0.00 4.85
1127 1243 2.319410 ATCTCGGGGAGGGAGGAAGG 62.319 65.000 0.00 0.00 29.41 3.46
1130 1246 0.398664 GAAATCTCGGGGAGGGAGGA 60.399 60.000 0.00 0.00 29.41 3.71
1134 1250 2.822399 CGGAAATCTCGGGGAGGG 59.178 66.667 0.00 0.00 0.00 4.30
1156 1272 2.943978 AACTGCCGAGGAGGGAACG 61.944 63.158 0.00 0.00 40.94 3.95
1160 1276 4.101448 CCCAACTGCCGAGGAGGG 62.101 72.222 0.00 0.00 41.48 4.30
1186 1307 4.065281 CCGACACGGGAGGGACAC 62.065 72.222 0.00 0.00 44.15 3.67
1218 1363 0.032403 TCCGGAACACTGTTGTACCG 59.968 55.000 0.00 11.74 33.55 4.02
1219 1364 1.202557 TGTCCGGAACACTGTTGTACC 60.203 52.381 5.23 0.00 33.55 3.34
1222 1367 1.663695 CTTGTCCGGAACACTGTTGT 58.336 50.000 5.23 0.00 37.70 3.32
1223 1368 0.307760 GCTTGTCCGGAACACTGTTG 59.692 55.000 5.23 0.00 37.70 3.33
1230 1375 1.369091 ATGCATCGCTTGTCCGGAAC 61.369 55.000 5.23 0.59 0.00 3.62
1232 1377 1.521457 GATGCATCGCTTGTCCGGA 60.521 57.895 11.68 0.00 0.00 5.14
1233 1378 1.091771 AAGATGCATCGCTTGTCCGG 61.092 55.000 20.67 0.00 0.00 5.14
1235 1380 1.739466 TGAAAGATGCATCGCTTGTCC 59.261 47.619 20.67 7.67 0.00 4.02
1239 1384 0.729116 CGGTGAAAGATGCATCGCTT 59.271 50.000 20.67 17.33 32.74 4.68
1240 1385 1.091771 CCGGTGAAAGATGCATCGCT 61.092 55.000 20.67 11.89 38.48 4.93
1241 1386 1.353103 CCGGTGAAAGATGCATCGC 59.647 57.895 20.67 14.35 38.48 4.58
1243 1388 1.940613 GTACCCGGTGAAAGATGCATC 59.059 52.381 19.37 19.37 0.00 3.91
1244 1389 1.559682 AGTACCCGGTGAAAGATGCAT 59.440 47.619 0.00 0.00 0.00 3.96
1245 1390 0.981183 AGTACCCGGTGAAAGATGCA 59.019 50.000 0.00 0.00 0.00 3.96
1248 1393 2.635915 TCAACAGTACCCGGTGAAAGAT 59.364 45.455 0.00 0.00 0.00 2.40
1251 1396 3.142951 CAATCAACAGTACCCGGTGAAA 58.857 45.455 0.00 0.00 0.00 2.69
1253 1398 1.609580 GCAATCAACAGTACCCGGTGA 60.610 52.381 0.00 3.30 0.00 4.02
1255 1400 0.690762 AGCAATCAACAGTACCCGGT 59.309 50.000 0.00 0.00 0.00 5.28
1257 1402 2.422597 TCAAGCAATCAACAGTACCCG 58.577 47.619 0.00 0.00 0.00 5.28
1258 1403 6.072175 TGTTAATCAAGCAATCAACAGTACCC 60.072 38.462 0.00 0.00 0.00 3.69
1259 1404 6.908825 TGTTAATCAAGCAATCAACAGTACC 58.091 36.000 0.00 0.00 0.00 3.34
1293 1498 0.886563 ACTCGGCAGTACCAGTGTAC 59.113 55.000 0.00 0.00 46.36 2.90
1296 1501 1.798813 GAAAACTCGGCAGTACCAGTG 59.201 52.381 0.00 0.00 39.03 3.66
1297 1502 1.692519 AGAAAACTCGGCAGTACCAGT 59.307 47.619 0.00 0.00 39.03 4.00
1298 1503 2.457366 AGAAAACTCGGCAGTACCAG 57.543 50.000 0.00 0.00 39.03 4.00
1299 1504 2.232941 CCTAGAAAACTCGGCAGTACCA 59.767 50.000 0.00 0.00 39.03 3.25
1300 1505 2.418334 CCCTAGAAAACTCGGCAGTACC 60.418 54.545 0.00 0.00 30.14 3.34
1301 1506 2.494870 TCCCTAGAAAACTCGGCAGTAC 59.505 50.000 0.00 0.00 30.14 2.73
1302 1507 2.811410 TCCCTAGAAAACTCGGCAGTA 58.189 47.619 0.00 0.00 30.14 2.74
1306 1518 1.735386 GGTTCCCTAGAAAACTCGGC 58.265 55.000 0.00 0.00 32.58 5.54
1308 1520 1.547372 TCCGGTTCCCTAGAAAACTCG 59.453 52.381 0.00 2.00 32.58 4.18
1310 1522 1.278413 GCTCCGGTTCCCTAGAAAACT 59.722 52.381 0.00 0.00 32.58 2.66
1312 1524 1.652947 AGCTCCGGTTCCCTAGAAAA 58.347 50.000 0.00 0.00 32.58 2.29
1318 1530 1.128188 AGTTGAAGCTCCGGTTCCCT 61.128 55.000 0.00 0.00 39.02 4.20
1325 1537 5.564048 AACTACTACTAGTTGAAGCTCCG 57.436 43.478 11.43 0.00 41.00 4.63
1327 1539 8.590719 AACAAAACTACTACTAGTTGAAGCTC 57.409 34.615 11.43 0.00 41.58 4.09
1329 1541 9.473640 ACTAACAAAACTACTACTAGTTGAAGC 57.526 33.333 11.43 0.00 41.58 3.86
1341 1553 6.812160 CGGCTCTAATCACTAACAAAACTACT 59.188 38.462 0.00 0.00 0.00 2.57
1342 1554 6.035758 CCGGCTCTAATCACTAACAAAACTAC 59.964 42.308 0.00 0.00 0.00 2.73
1343 1555 6.103997 CCGGCTCTAATCACTAACAAAACTA 58.896 40.000 0.00 0.00 0.00 2.24
1344 1556 4.935808 CCGGCTCTAATCACTAACAAAACT 59.064 41.667 0.00 0.00 0.00 2.66
1345 1557 4.094442 CCCGGCTCTAATCACTAACAAAAC 59.906 45.833 0.00 0.00 0.00 2.43
1346 1558 4.020039 TCCCGGCTCTAATCACTAACAAAA 60.020 41.667 0.00 0.00 0.00 2.44
1350 1562 3.814005 TTCCCGGCTCTAATCACTAAC 57.186 47.619 0.00 0.00 0.00 2.34
1351 1563 6.681729 AATATTCCCGGCTCTAATCACTAA 57.318 37.500 0.00 0.00 0.00 2.24
1356 1568 3.440522 GGCAAATATTCCCGGCTCTAATC 59.559 47.826 0.00 0.00 0.00 1.75
1381 1602 1.385347 ACACCCACCCTCAACAGGA 60.385 57.895 0.00 0.00 43.65 3.86
1382 1603 1.073199 GACACCCACCCTCAACAGG 59.927 63.158 0.00 0.00 39.98 4.00
1387 1608 2.230653 CCCATGACACCCACCCTCA 61.231 63.158 0.00 0.00 0.00 3.86
1388 1609 2.677228 CCCATGACACCCACCCTC 59.323 66.667 0.00 0.00 0.00 4.30
1390 1611 2.938798 TCCCCATGACACCCACCC 60.939 66.667 0.00 0.00 0.00 4.61
1391 1612 2.355115 GTCCCCATGACACCCACC 59.645 66.667 0.00 0.00 43.85 4.61
1398 1619 0.107459 GAGCTTCCAGTCCCCATGAC 60.107 60.000 0.00 0.00 44.82 3.06
1399 1620 1.274703 GGAGCTTCCAGTCCCCATGA 61.275 60.000 0.00 0.00 36.28 3.07
1400 1621 1.225704 GGAGCTTCCAGTCCCCATG 59.774 63.158 0.00 0.00 36.28 3.66
1402 1623 2.206900 TGGAGCTTCCAGTCCCCA 59.793 61.111 1.25 0.00 42.67 4.96
1443 1937 1.356624 GCAAGCATACATCCACGGC 59.643 57.895 0.00 0.00 0.00 5.68
1474 2011 2.119029 GCGAACCTTACCATGGGCC 61.119 63.158 18.09 0.00 0.00 5.80
1532 2070 3.355378 CAGGTCCAATGCTGGTAATCAA 58.645 45.455 0.00 0.00 43.97 2.57
1679 2219 2.034305 GCTGATGTTCCTGAATGATGGC 59.966 50.000 0.00 0.00 0.00 4.40
1702 2242 3.796717 GGTACAGAGTTTTTGTTTGCTGC 59.203 43.478 0.00 0.00 0.00 5.25
1771 2459 4.676924 GCTTGAACTGCATGAACAAACTAC 59.323 41.667 0.00 0.00 0.00 2.73
1773 2461 3.382546 AGCTTGAACTGCATGAACAAACT 59.617 39.130 0.00 0.00 0.00 2.66
1774 2462 3.709987 AGCTTGAACTGCATGAACAAAC 58.290 40.909 0.00 0.00 0.00 2.93
1791 2479 0.322008 GCTGGCCAAGTCAGTAGCTT 60.322 55.000 7.01 0.00 37.61 3.74
1849 2537 6.054860 AGCAAGCTCTGGTAATAAGAAAGA 57.945 37.500 0.00 0.00 32.70 2.52
1851 2539 5.351465 CGAAGCAAGCTCTGGTAATAAGAAA 59.649 40.000 0.00 0.00 33.58 2.52
1854 2542 4.433615 TCGAAGCAAGCTCTGGTAATAAG 58.566 43.478 0.00 0.00 33.58 1.73
1857 2545 3.055819 TCTTCGAAGCAAGCTCTGGTAAT 60.056 43.478 20.56 0.00 33.58 1.89
1979 2668 1.071699 TCCTTCCACTGCAGGTACAAC 59.928 52.381 19.93 0.00 0.00 3.32
2205 2897 4.748277 AAAATGAAGCAATAGCCAGCAT 57.252 36.364 0.00 0.00 43.56 3.79
2320 3017 1.536662 AGTTTCCGGCCTGAGAGGT 60.537 57.895 0.00 0.00 37.80 3.85
2326 3023 2.409870 GGCATGAGTTTCCGGCCTG 61.410 63.158 0.00 0.00 41.39 4.85
2332 3029 3.555956 CGTAGTATGTGGCATGAGTTTCC 59.444 47.826 0.00 0.00 0.00 3.13
2440 3137 4.760715 TCTGAAAACGTAGACTGCTAGACT 59.239 41.667 0.00 0.00 0.00 3.24
2586 3283 4.105486 CAGATTCGAAGTTCGCAGTATGA 58.895 43.478 20.42 0.00 40.21 2.15
2672 3369 5.373981 AGTTCGTAGAAGTTGAGGTACAG 57.626 43.478 0.00 0.00 45.90 2.74
2782 3479 2.625737 CAGCACTATCACCAGGAAGTG 58.374 52.381 0.00 2.62 37.53 3.16
2794 3491 7.577616 GCCAAGTCTTTTAATTTCCAGCACTAT 60.578 37.037 0.00 0.00 0.00 2.12
2813 3510 1.903183 AGAGGTTAGGACAGCCAAGTC 59.097 52.381 0.00 0.00 37.80 3.01
2814 3511 2.031495 AGAGGTTAGGACAGCCAAGT 57.969 50.000 0.00 0.00 36.29 3.16
2830 3527 3.118482 TCAGGCCTGCAGAATTAGAAGAG 60.118 47.826 28.91 0.00 0.00 2.85
2831 3528 2.840038 TCAGGCCTGCAGAATTAGAAGA 59.160 45.455 28.91 2.45 0.00 2.87
2884 3581 0.595095 CTGTCCACAAAAGGAGCTGC 59.405 55.000 0.00 0.00 38.64 5.25
2894 3591 1.152984 CAGCCCACACTGTCCACAA 60.153 57.895 0.00 0.00 32.78 3.33
2914 3611 2.223340 GCGTGAAGGATGCCTTGTAATG 60.223 50.000 2.98 0.00 44.82 1.90
2917 3614 3.153024 GCGTGAAGGATGCCTTGTA 57.847 52.632 2.98 0.00 44.82 2.41
2950 3647 2.508439 ACACCGCCGATAGCAACG 60.508 61.111 0.00 0.00 44.04 4.10
2956 3653 0.681887 TTGAGAGGACACCGCCGATA 60.682 55.000 0.00 0.00 0.00 2.92
2975 3672 3.918912 ACATCATGGGCTTCCAGGTATAT 59.081 43.478 0.00 0.00 44.92 0.86
3025 3722 2.815211 GCGAGGCAGATTGCGTGA 60.815 61.111 0.53 0.00 46.21 4.35
3158 3855 2.821969 ACAGATTCACCACCAAAGATGC 59.178 45.455 0.00 0.00 0.00 3.91
3171 3868 5.296780 GTGGAGACAAGTTTTCACAGATTCA 59.703 40.000 0.00 0.00 46.06 2.57
3299 3996 4.546570 GGCTATCACAAGTTTCAAACCAC 58.453 43.478 0.00 0.00 0.00 4.16
3507 4294 9.612066 TCTTTTGTTTTTCTATTCCTGCATTTT 57.388 25.926 0.00 0.00 0.00 1.82
3508 4295 9.612066 TTCTTTTGTTTTTCTATTCCTGCATTT 57.388 25.926 0.00 0.00 0.00 2.32
3509 4296 9.783081 ATTCTTTTGTTTTTCTATTCCTGCATT 57.217 25.926 0.00 0.00 0.00 3.56
3511 4298 9.912634 CTATTCTTTTGTTTTTCTATTCCTGCA 57.087 29.630 0.00 0.00 0.00 4.41
3512 4299 9.914131 ACTATTCTTTTGTTTTTCTATTCCTGC 57.086 29.630 0.00 0.00 0.00 4.85
3520 4307 9.736023 GACATGACACTATTCTTTTGTTTTTCT 57.264 29.630 0.00 0.00 0.00 2.52
3521 4308 8.968242 GGACATGACACTATTCTTTTGTTTTTC 58.032 33.333 0.00 0.00 0.00 2.29
3522 4309 8.695456 AGGACATGACACTATTCTTTTGTTTTT 58.305 29.630 0.00 0.00 0.00 1.94
3523 4310 8.237811 AGGACATGACACTATTCTTTTGTTTT 57.762 30.769 0.00 0.00 0.00 2.43
3524 4311 7.721399 AGAGGACATGACACTATTCTTTTGTTT 59.279 33.333 0.00 0.00 0.00 2.83
3525 4312 7.227156 AGAGGACATGACACTATTCTTTTGTT 58.773 34.615 0.00 0.00 0.00 2.83
3526 4313 6.773638 AGAGGACATGACACTATTCTTTTGT 58.226 36.000 0.00 0.00 0.00 2.83
3527 4314 7.173907 ACAAGAGGACATGACACTATTCTTTTG 59.826 37.037 0.00 0.00 0.00 2.44
3528 4315 7.227156 ACAAGAGGACATGACACTATTCTTTT 58.773 34.615 0.00 0.00 0.00 2.27
3529 4316 6.773638 ACAAGAGGACATGACACTATTCTTT 58.226 36.000 0.00 0.00 0.00 2.52
3530 4317 6.365970 ACAAGAGGACATGACACTATTCTT 57.634 37.500 0.00 0.00 0.00 2.52
3531 4318 6.127310 GGTACAAGAGGACATGACACTATTCT 60.127 42.308 0.00 0.00 0.00 2.40
3613 4409 6.432472 AGAAAAATCATCCACTCAAACCTCTC 59.568 38.462 0.00 0.00 0.00 3.20
3637 4433 9.994432 GATTCATTTGTAGTACATTTGGAGAAG 57.006 33.333 3.28 0.00 0.00 2.85
3651 4448 8.624776 GGAGTTTTCCATAGGATTCATTTGTAG 58.375 37.037 0.00 0.00 43.45 2.74
3724 4521 6.596869 TTGGAGGATTTGGATCTTTAGGAT 57.403 37.500 0.00 0.00 37.37 3.24
3768 4623 5.106277 ACGCTTTTTAAGGCTCCTTTCATAC 60.106 40.000 6.47 0.00 37.47 2.39
3772 4627 3.502595 AGACGCTTTTTAAGGCTCCTTTC 59.497 43.478 6.47 0.00 37.47 2.62
3844 4702 7.715249 GCAATCCTTGTCTACATAATCAGGTAA 59.285 37.037 0.00 0.00 0.00 2.85
3846 4704 6.058183 GCAATCCTTGTCTACATAATCAGGT 58.942 40.000 0.00 0.00 0.00 4.00
3854 4712 7.112122 TGTCTAAATGCAATCCTTGTCTACAT 58.888 34.615 0.00 0.00 0.00 2.29
3867 4725 7.040132 TGTGGATTTGTACATGTCTAAATGCAA 60.040 33.333 27.59 19.90 40.70 4.08
3901 4759 4.155280 CCTACGTGGGGACAACAAAATTAG 59.845 45.833 10.68 0.00 46.06 1.73
3903 4761 2.888414 CCTACGTGGGGACAACAAAATT 59.112 45.455 10.68 0.00 46.06 1.82
3909 4767 0.250597 AAAGCCTACGTGGGGACAAC 60.251 55.000 20.55 2.02 46.06 3.32
4054 5131 7.645735 GCTCCTCTCTTTTAGTTTTCTTGTTTG 59.354 37.037 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.