AutoCloner

Multiple sequence alignment - TraesCS4B01G353400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G353400	chr4B	100.000	2384	0	0	1	2384	645085496	645083113	0.000000e+00	4403
1	TraesCS4B01G353400	chr4B	96.847	222	5	2	1502	1723	645078861	645078642	1.040000e-98	370
2	TraesCS4B01G353400	chr3B	96.489	883	18	1	1502	2384	377671179	377672048	0.000000e+00	1447
3	TraesCS4B01G353400	chr3B	96.629	801	14	1	1508	2308	821727091	821726304	0.000000e+00	1317
4	TraesCS4B01G353400	chr3B	84.805	487	60	9	1	485	73310515	73310041	5.960000e-131	477
5	TraesCS4B01G353400	chr3B	98.113	212	4	0	1502	1713	377676055	377676266	1.040000e-98	370
6	TraesCS4B01G353400	chr3B	98.086	209	4	0	1508	1716	821723397	821723189	4.840000e-97	364
7	TraesCS4B01G353400	chr5B	96.465	877	17	2	1508	2384	648276138	648275276	0.000000e+00	1435
8	TraesCS4B01G353400	chr5B	87.845	543	52	11	1	538	510506462	510505929	2.010000e-175	625
9	TraesCS4B01G353400	chr4D	90.444	879	58	10	1504	2381	65131660	65132513	0.000000e+00	1134
10	TraesCS4B01G353400	chr4D	88.738	737	46	18	765	1493	501234396	501233689	0.000000e+00	867
11	TraesCS4B01G353400	chr4D	89.027	401	29	7	1081	1478	501161729	501161341	1.280000e-132	483
12	TraesCS4B01G353400	chr4D	90.556	180	9	2	543	716	501235039	501234862	5.120000e-57	231
13	TraesCS4B01G353400	chr5A	90.076	786	54	11	715	1493	683125287	683126055	0.000000e+00	998
14	TraesCS4B01G353400	chr6D	95.390	564	26	0	1502	2065	77826268	77825705	0.000000e+00	898
15	TraesCS4B01G353400	chr6D	94.346	283	16	0	2102	2384	77825707	77825425	3.640000e-118	435
16	TraesCS4B01G353400	chr7B	82.494	834	120	18	1555	2381	598167367	598168181	0.000000e+00	708
17	TraesCS4B01G353400	chr7B	89.094	541	48	6	1	538	424150915	424151447	0.000000e+00	662
18	TraesCS4B01G353400	chr7B	87.684	544	54	6	1	538	445678253	445678789	2.600000e-174	621
19	TraesCS4B01G353400	chrUn	87.431	541	57	7	1	538	214040550	214041082	1.570000e-171	612
20	TraesCS4B01G353400	chrUn	87.316	544	58	7	1	541	240304535	240304000	1.570000e-171	612
21	TraesCS4B01G353400	chr2B	87.269	542	56	10	1	538	711310241	711309709	7.290000e-170	606
22	TraesCS4B01G353400	chr1B	85.240	542	68	9	1	538	545419636	545419103	4.480000e-152	547
23	TraesCS4B01G353400	chr1B	83.725	553	65	15	1	548	648785103	648784571	1.270000e-137	499
24	TraesCS4B01G353400	chr1B	82.353	306	31	16	1055	1341	350631233	350630932	6.580000e-61	244
25	TraesCS4B01G353400	chr3D	79.448	725	110	23	1668	2381	61660738	61661434	5.960000e-131	477
26	TraesCS4B01G353400	chr5D	75.952	840	149	31	1565	2378	335812962	335813774	1.340000e-102	383
27	TraesCS4B01G353400	chr1D	81.672	311	31	17	1053	1341	261373578	261373884	3.960000e-58	235
28	TraesCS4B01G353400	chr1A	81.672	311	31	15	1053	1341	338600800	338600494	3.960000e-58	235

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G353400	chr4B	645083113	645085496	2383	True	4403.0	4403	100.0000	1	2384	1	chr4B.!!$R2	2383
1	TraesCS4B01G353400	chr3B	377671179	377672048	869	False	1447.0	1447	96.4890	1502	2384	1	chr3B.!!$F1	882
2	TraesCS4B01G353400	chr3B	821723189	821727091	3902	True	840.5	1317	97.3575	1508	2308	2	chr3B.!!$R2	800
3	TraesCS4B01G353400	chr5B	648275276	648276138	862	True	1435.0	1435	96.4650	1508	2384	1	chr5B.!!$R2	876
4	TraesCS4B01G353400	chr5B	510505929	510506462	533	True	625.0	625	87.8450	1	538	1	chr5B.!!$R1	537
5	TraesCS4B01G353400	chr4D	65131660	65132513	853	False	1134.0	1134	90.4440	1504	2381	1	chr4D.!!$F1	877
6	TraesCS4B01G353400	chr4D	501233689	501235039	1350	True	549.0	867	89.6470	543	1493	2	chr4D.!!$R2	950
7	TraesCS4B01G353400	chr5A	683125287	683126055	768	False	998.0	998	90.0760	715	1493	1	chr5A.!!$F1	778
8	TraesCS4B01G353400	chr6D	77825425	77826268	843	True	666.5	898	94.8680	1502	2384	2	chr6D.!!$R1	882
9	TraesCS4B01G353400	chr7B	598167367	598168181	814	False	708.0	708	82.4940	1555	2381	1	chr7B.!!$F3	826
10	TraesCS4B01G353400	chr7B	424150915	424151447	532	False	662.0	662	89.0940	1	538	1	chr7B.!!$F1	537
11	TraesCS4B01G353400	chr7B	445678253	445678789	536	False	621.0	621	87.6840	1	538	1	chr7B.!!$F2	537
12	TraesCS4B01G353400	chrUn	214040550	214041082	532	False	612.0	612	87.4310	1	538	1	chrUn.!!$F1	537
13	TraesCS4B01G353400	chrUn	240304000	240304535	535	True	612.0	612	87.3160	1	541	1	chrUn.!!$R1	540
14	TraesCS4B01G353400	chr2B	711309709	711310241	532	True	606.0	606	87.2690	1	538	1	chr2B.!!$R1	537
15	TraesCS4B01G353400	chr1B	545419103	545419636	533	True	547.0	547	85.2400	1	538	1	chr1B.!!$R2	537
16	TraesCS4B01G353400	chr1B	648784571	648785103	532	True	499.0	499	83.7250	1	548	1	chr1B.!!$R3	547
17	TraesCS4B01G353400	chr3D	61660738	61661434	696	False	477.0	477	79.4480	1668	2381	1	chr3D.!!$F1	713
18	TraesCS4B01G353400	chr5D	335812962	335813774	812	False	383.0	383	75.9520	1565	2378	1	chr5D.!!$F1	813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
336	337	0.179127	ATCGTCGATCTGTGGCACTG	60.179	55.0	19.83	18.54	0.0	3.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1482	1927	0.381089	CCGCTAACAGTCCTCTACCG	59.619	60.0	0.0	0.0	0.0	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	2.568612	CTCCAGAGCAGCGACGAA	59.431	61.111	0.00	0.00	0.00	3.85
74	75	2.682594	CCTCATCCTGGACCAGATACA	58.317	52.381	23.77	4.03	32.44	2.29
75	76	2.632028	CCTCATCCTGGACCAGATACAG	59.368	54.545	23.77	12.33	39.30	2.74
79	80	2.504920	CTGGACCAGATACAGGCGA	58.495	57.895	17.22	0.00	35.29	5.54
82	83	1.589196	GACCAGATACAGGCGACGC	60.589	63.158	12.43	12.43	0.00	5.19
120	121	3.157252	AGCCCGGCGTCTGATGAT	61.157	61.111	6.01	0.00	0.00	2.45
197	198	1.781025	CTGGAAGCCGCGTCAAACAA	61.781	55.000	4.92	0.00	0.00	2.83
228	229	2.279073	CCGACTCCTCCTAGCCCA	59.721	66.667	0.00	0.00	0.00	5.36
321	322	5.638657	TGTACGCCAAACTACATTTAATCGT	59.361	36.000	0.00	0.00	34.86	3.73
336	337	0.179127	ATCGTCGATCTGTGGCACTG	60.179	55.000	19.83	18.54	0.00	3.66
354	355	4.109766	CACTGTGAATCGCCGAACTATTA	58.890	43.478	0.32	0.00	0.00	0.98
411	412	7.505248	TGGGAATGATGGATTTCGAATATGAAA	59.495	33.333	0.00	0.00	41.69	2.69
456	458	3.941483	CGTGTGGCTAGGAAGAAATGAAT	59.059	43.478	0.00	0.00	0.00	2.57
458	460	5.189180	GTGTGGCTAGGAAGAAATGAATCT	58.811	41.667	0.00	0.00	0.00	2.40
517	523	3.894547	TTTTCGGCGTCCTGAGGGC	62.895	63.158	6.85	0.00	38.23	5.19
538	545	1.965754	AACGGGCTGGAGATGCTCTC	61.966	60.000	0.00	5.01	42.66	3.20
541	548	1.336632	GGGCTGGAGATGCTCTCAGT	61.337	60.000	13.06	0.00	45.12	3.41
569	576	4.796231	GCTTCGGCCGAGCGAGAA	62.796	66.667	29.20	11.70	34.32	2.87
576	583	2.179517	CCGAGCGAGAAAGCGTCT	59.820	61.111	0.00	0.00	43.00	4.18
595	602	2.747855	CTGGGCAGCGAAAGGACC	60.748	66.667	0.00	0.00	0.00	4.46
622	629	1.081892	CGTCTCATGGACAAGGCAAG	58.918	55.000	12.80	0.00	44.70	4.01
623	630	1.457346	GTCTCATGGACAAGGCAAGG	58.543	55.000	8.84	0.00	43.94	3.61
705	718	1.071605	GCAGTCACCGCTTTGTCTAG	58.928	55.000	0.00	0.00	0.00	2.43
733	872	0.984829	CGTGCACTGACTACATCACG	59.015	55.000	16.19	0.00	37.57	4.35
753	892	4.034626	CACGCAATATATGAAACCAACGGA	59.965	41.667	0.00	0.00	0.00	4.69
828	1262	1.270147	GCTTATCGCCCAACGGATACT	60.270	52.381	0.00	0.00	43.89	2.12
886	1324	1.032014	CTACTCCCTGCTCTGCTCTC	58.968	60.000	0.00	0.00	0.00	3.20
888	1326	1.381599	CTCCCTGCTCTGCTCTCCT	60.382	63.158	0.00	0.00	0.00	3.69
897	1335	0.330941	TCTGCTCTCCTCTCTGCTCA	59.669	55.000	0.00	0.00	0.00	4.26
901	1339	4.042684	TCTGCTCTCCTCTCTGCTCATATA	59.957	45.833	0.00	0.00	0.00	0.86
935	1373	2.629763	GACGCAACGGAACACCAC	59.370	61.111	0.00	0.00	0.00	4.16
936	1374	2.125065	ACGCAACGGAACACCACA	60.125	55.556	0.00	0.00	0.00	4.17
951	1389	1.735920	CACAGCTCGCACTCACTCC	60.736	63.158	0.00	0.00	0.00	3.85
962	1400	1.135546	CACTCACTCCACACTAGCGAG	60.136	57.143	0.00	0.00	31.00	5.03
989	1428	2.956964	CGAAGCCACGATCGAGCC	60.957	66.667	24.34	3.13	41.43	4.70
990	1429	2.956964	GAAGCCACGATCGAGCCG	60.957	66.667	24.34	6.86	0.00	5.52
991	1430	3.411418	GAAGCCACGATCGAGCCGA	62.411	63.158	24.34	0.00	41.13	5.54
992	1431	3.417275	AAGCCACGATCGAGCCGAG	62.417	63.158	24.34	8.38	39.91	4.63
1003	1442	3.706563	GAGCCGAGCGCACTCATGA	62.707	63.158	11.47	0.00	43.66	3.07
1036	1475	1.475403	CGGTGAGAGAGGTGGTATGT	58.525	55.000	0.00	0.00	0.00	2.29
1037	1476	1.405821	CGGTGAGAGAGGTGGTATGTC	59.594	57.143	0.00	0.00	0.00	3.06
1038	1477	1.405821	GGTGAGAGAGGTGGTATGTCG	59.594	57.143	0.00	0.00	0.00	4.35
1134	1573	3.054503	CTGCTGCTGGTGTGCTCC	61.055	66.667	0.00	0.00	0.00	4.70
1140	1579	4.767255	CTGGTGTGCTCCCTCGGC	62.767	72.222	0.00	0.00	0.00	5.54
1345	1787	2.038813	TCAGGATCACGCCCTCCA	59.961	61.111	0.00	0.00	33.75	3.86
1346	1788	2.025767	CTCAGGATCACGCCCTCCAG	62.026	65.000	0.00	0.00	33.75	3.86
1349	1791	4.554036	GATCACGCCCTCCAGCCC	62.554	72.222	0.00	0.00	0.00	5.19
1413	1858	9.662545	GAAGAAGAAAGAAGAAGAGTTTGATTG	57.337	33.333	0.00	0.00	0.00	2.67
1447	1892	2.732412	TCCAGTTCGCTCTGAAGAAG	57.268	50.000	7.96	0.00	37.23	2.85
1455	1900	4.527509	TCGCTCTGAAGAAGTCTGATTT	57.472	40.909	0.00	0.00	34.09	2.17
1456	1901	5.644977	TCGCTCTGAAGAAGTCTGATTTA	57.355	39.130	0.00	0.00	34.09	1.40
1457	1902	5.645624	TCGCTCTGAAGAAGTCTGATTTAG	58.354	41.667	0.00	0.00	34.09	1.85
1493	1938	3.745163	GCTAGTCTTAGCGGTAGAGGACT	60.745	52.174	21.35	21.35	42.60	3.85
1494	1939	2.645802	AGTCTTAGCGGTAGAGGACTG	58.354	52.381	18.86	0.00	37.51	3.51
1495	1940	2.026075	AGTCTTAGCGGTAGAGGACTGT	60.026	50.000	18.86	4.41	36.71	3.55
1496	1941	2.754002	GTCTTAGCGGTAGAGGACTGTT	59.246	50.000	13.37	0.00	36.71	3.16
1497	1942	3.944015	GTCTTAGCGGTAGAGGACTGTTA	59.056	47.826	13.37	0.00	36.71	2.41
1498	1943	4.035441	GTCTTAGCGGTAGAGGACTGTTAG	59.965	50.000	13.37	0.00	36.71	2.34
1499	1944	1.104630	AGCGGTAGAGGACTGTTAGC	58.895	55.000	0.00	0.00	36.71	3.09
1500	1945	0.248539	GCGGTAGAGGACTGTTAGCG	60.249	60.000	4.89	4.89	40.21	4.26
1591	2037	3.065371	GCAGTTTTGTTGAGTAGTGCTGT	59.935	43.478	0.00	0.00	34.82	4.40
1931	2422	0.952659	ACCTATCCCACCTCCTCCAT	59.047	55.000	0.00	0.00	0.00	3.41
2202	2694	2.284625	TCCAGGAGGCGGTCATGT	60.285	61.111	0.00	0.00	35.03	3.21
2293	2785	1.581912	CCGTGTACATCGACGTCGG	60.582	63.158	35.05	23.24	40.29	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	1.569479	GCCTTGAGCTTTTCGTCGCT	61.569	55.000	0.00	0.00	39.61	4.93
21	22	0.396811	AGTACCACGCCTTGAGCTTT	59.603	50.000	0.00	0.00	40.39	3.51
112	113	0.034476	GCGGAGGCATCATCATCAGA	59.966	55.000	0.00	0.00	39.62	3.27
120	121	4.916293	GGCATCGCGGAGGCATCA	62.916	66.667	17.53	0.00	41.39	3.07
179	180	1.820056	TTGTTTGACGCGGCTTCCA	60.820	52.632	15.80	3.27	0.00	3.53
244	245	4.760047	CTCAACCTCCGGGTGCGG	62.760	72.222	0.00	0.00	46.67	5.69
249	250	4.148825	CCGAGCTCAACCTCCGGG	62.149	72.222	15.40	0.00	38.88	5.73
305	306	7.010183	CCACAGATCGACGATTAAATGTAGTTT	59.990	37.037	12.40	0.00	0.00	2.66
316	317	0.532573	AGTGCCACAGATCGACGATT	59.467	50.000	12.40	0.00	0.00	3.34
321	322	0.678950	TTCACAGTGCCACAGATCGA	59.321	50.000	0.00	0.00	0.00	3.59
336	337	3.365832	TCGTAATAGTTCGGCGATTCAC	58.634	45.455	11.76	6.21	0.00	3.18
373	374	4.082026	CCATCATTCCCACTCAAAGAAACC	60.082	45.833	0.00	0.00	0.00	3.27
456	458	1.030488	CGCTAGTTCGGTCCCTGAGA	61.030	60.000	0.00	0.00	0.00	3.27
458	460	2.707849	GCGCTAGTTCGGTCCCTGA	61.708	63.158	0.00	0.00	0.00	3.86
486	489	0.320421	CCGAAAAAGAGCGACCTGGA	60.320	55.000	0.00	0.00	0.00	3.86
517	523	2.892425	GCATCTCCAGCCCGTTCG	60.892	66.667	0.00	0.00	0.00	3.95
519	525	2.586792	GAGCATCTCCAGCCCGTT	59.413	61.111	0.00	0.00	0.00	4.44
538	545	2.281761	AAGCGGCCCAACTGACTG	60.282	61.111	0.00	0.00	0.00	3.51
541	548	4.697756	CCGAAGCGGCCCAACTGA	62.698	66.667	0.00	0.00	41.17	3.41
560	567	2.783064	GCAGACGCTTTCTCGCTCG	61.783	63.158	0.00	0.00	34.30	5.03
593	600	1.439228	CATGAGACGATGCGGAGGT	59.561	57.895	0.00	0.00	0.00	3.85
595	602	0.596083	GTCCATGAGACGATGCGGAG	60.596	60.000	0.00	0.00	35.30	4.63
629	636	5.465532	TTCAATAATGCTTCAACTGGCAA	57.534	34.783	0.00	0.00	41.90	4.52
684	697	1.891919	GACAAAGCGGTGACTGCCA	60.892	57.895	13.64	0.00	0.00	4.92
705	718	3.177920	CAGTGCACGCTCGCTCTC	61.178	66.667	12.01	0.00	33.63	3.20
733	872	7.820044	TTTTTCCGTTGGTTTCATATATTGC	57.180	32.000	0.00	0.00	0.00	3.56
763	1193	3.003275	CAGAAACGGCAAGCTTGTTCTAA	59.997	43.478	26.55	0.00	0.00	2.10
886	1324	4.322567	GGGCTTTTATATGAGCAGAGAGG	58.677	47.826	9.31	0.00	40.63	3.69
888	1326	3.641436	TCGGGCTTTTATATGAGCAGAGA	59.359	43.478	9.31	3.84	40.63	3.10
897	1335	2.567985	CGTTGGGTCGGGCTTTTATAT	58.432	47.619	0.00	0.00	0.00	0.86
901	1339	2.596338	CCGTTGGGTCGGGCTTTT	60.596	61.111	0.00	0.00	45.88	2.27
920	1358	2.631428	CTGTGGTGTTCCGTTGCG	59.369	61.111	0.00	0.00	36.30	4.85
935	1373	1.735920	GTGGAGTGAGTGCGAGCTG	60.736	63.158	0.00	0.00	0.00	4.24
936	1374	2.203082	TGTGGAGTGAGTGCGAGCT	61.203	57.895	0.00	0.00	0.00	4.09
951	1389	0.807667	GGTGATGGCTCGCTAGTGTG	60.808	60.000	2.66	1.75	32.30	3.82
972	1410	2.956964	GGCTCGATCGTGGCTTCG	60.957	66.667	29.46	0.00	36.72	3.79
989	1428	2.584418	CCCTCATGAGTGCGCTCG	60.584	66.667	21.66	9.16	44.48	5.03
990	1429	2.894387	GCCCTCATGAGTGCGCTC	60.894	66.667	20.51	20.51	41.97	5.03
991	1430	4.827087	CGCCCTCATGAGTGCGCT	62.827	66.667	33.67	0.00	46.88	5.92
994	1433	2.202987	CCTCGCCCTCATGAGTGC	60.203	66.667	19.06	19.06	0.00	4.40
995	1434	2.202987	GCCTCGCCCTCATGAGTG	60.203	66.667	21.11	11.52	0.00	3.51
996	1435	2.685017	TGCCTCGCCCTCATGAGT	60.685	61.111	21.11	0.00	0.00	3.41
1020	1459	2.366533	GACGACATACCACCTCTCTCA	58.633	52.381	0.00	0.00	0.00	3.27
1037	1476	3.978867	GACCTCGTGCTCGTCGACG	62.979	68.421	31.30	31.30	41.45	5.12
1038	1477	2.202324	GACCTCGTGCTCGTCGAC	60.202	66.667	5.18	5.18	38.33	4.20
1046	1485	4.803426	CCAGCCTCGACCTCGTGC	62.803	72.222	0.00	0.00	40.80	5.34
1254	1696	4.157120	ATGTAGGGGTCGCCGCAC	62.157	66.667	13.69	7.38	39.05	5.34
1389	1834	8.744568	ACAATCAAACTCTTCTTCTTTCTTCT	57.255	30.769	0.00	0.00	0.00	2.85
1390	1835	9.444534	GAACAATCAAACTCTTCTTCTTTCTTC	57.555	33.333	0.00	0.00	0.00	2.87
1413	1858	5.672321	GCGAACTGGAATGATTCTTCAGAAC	60.672	44.000	15.31	9.10	36.80	3.01
1482	1927	0.381089	CCGCTAACAGTCCTCTACCG	59.619	60.000	0.00	0.00	0.00	4.02
1493	1938	0.688487	ACCTTGGCTAACCGCTAACA	59.312	50.000	0.00	0.00	39.70	2.41
1494	1939	2.093816	ACTACCTTGGCTAACCGCTAAC	60.094	50.000	0.00	0.00	39.70	2.34
1495	1940	2.181975	ACTACCTTGGCTAACCGCTAA	58.818	47.619	0.00	0.00	39.70	3.09
1496	1941	1.856629	ACTACCTTGGCTAACCGCTA	58.143	50.000	0.00	0.00	39.70	4.26
1497	1942	0.981943	AACTACCTTGGCTAACCGCT	59.018	50.000	0.00	0.00	39.70	5.52
1498	1943	2.678471	TAACTACCTTGGCTAACCGC	57.322	50.000	0.00	0.00	39.70	5.68
1499	1944	3.133362	TCCATAACTACCTTGGCTAACCG	59.867	47.826	0.00	0.00	39.70	4.44
1500	1945	4.163649	ACTCCATAACTACCTTGGCTAACC	59.836	45.833	0.00	0.00	0.00	2.85
1591	2037	2.753966	GCCACTACCGAGCGACGTA	61.754	63.158	0.00	0.00	40.78	3.57
1644	2091	2.099263	TCGAGGCTGCAGAGTTATACAC	59.901	50.000	20.43	0.00	0.00	2.90
1673	2121	4.728772	AGAATGGGATTCAACACACTTGA	58.271	39.130	0.00	0.00	41.71	3.02
2317	2809	1.942657	AGTATTGCATCACGGTCATGC	59.057	47.619	10.26	10.26	45.92	4.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.