Multiple sequence alignment - TraesCS4B01G352600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G352600 chr4B 100.000 2432 0 0 1 2432 644593693 644596124 0.000000e+00 4492.0
1 TraesCS4B01G352600 chr4B 86.375 1189 122 14 878 2056 613128859 613130017 0.000000e+00 1262.0
2 TraesCS4B01G352600 chr4B 90.976 820 39 13 336 1154 368725234 368726019 0.000000e+00 1072.0
3 TraesCS4B01G352600 chr4B 84.830 323 14 17 3 292 368724962 368725282 2.370000e-75 292.0
4 TraesCS4B01G352600 chr4B 95.745 47 2 0 2386 2432 343642409 343642455 2.590000e-10 76.8
5 TraesCS4B01G352600 chr4B 100.000 28 0 0 464 491 644594079 644594106 4.000000e-03 52.8
6 TraesCS4B01G352600 chr7B 91.977 2094 131 12 370 2432 725302584 725304671 0.000000e+00 2902.0
7 TraesCS4B01G352600 chr7B 86.439 1025 76 27 1471 2432 681250220 681251244 0.000000e+00 1064.0
8 TraesCS4B01G352600 chr7B 92.830 265 17 2 1 263 725302038 725302302 1.360000e-102 383.0
9 TraesCS4B01G352600 chr7B 95.522 134 6 0 176 309 122461222 122461355 5.270000e-52 215.0
10 TraesCS4B01G352600 chr7B 97.917 48 1 0 2385 2432 725305880 725305927 1.550000e-12 84.2
11 TraesCS4B01G352600 chr7B 100.000 28 0 0 464 491 725302601 725302628 4.000000e-03 52.8
12 TraesCS4B01G352600 chr2B 88.246 1625 106 25 878 2432 149795496 149797105 0.000000e+00 1864.0
13 TraesCS4B01G352600 chr2B 95.388 477 22 0 402 878 124027419 124026943 0.000000e+00 760.0
14 TraesCS4B01G352600 chr2B 97.872 47 1 0 2386 2432 149797719 149797765 5.570000e-12 82.4
15 TraesCS4B01G352600 chr2B 97.872 47 1 0 2386 2432 149799022 149799068 5.570000e-12 82.4
16 TraesCS4B01G352600 chr2B 100.000 28 0 0 387 414 124027357 124027330 4.000000e-03 52.8
17 TraesCS4B01G352600 chr5B 87.712 1595 121 33 878 2432 639286778 639288337 0.000000e+00 1790.0
18 TraesCS4B01G352600 chr5B 86.334 1244 108 21 1095 2298 482078643 482079864 0.000000e+00 1299.0
19 TraesCS4B01G352600 chr5B 85.894 1191 133 15 878 2062 565309122 565307961 0.000000e+00 1236.0
20 TraesCS4B01G352600 chr5B 95.294 85 4 0 488 572 598986969 598987053 4.220000e-28 135.0
21 TraesCS4B01G352600 chr5B 90.000 50 4 1 2136 2185 345109973 345110021 2.020000e-06 63.9
22 TraesCS4B01G352600 chr1B 86.835 1504 112 28 878 2340 681885552 681887010 0.000000e+00 1602.0
23 TraesCS4B01G352600 chr1B 86.229 777 61 13 1628 2360 516775380 516776154 0.000000e+00 800.0
24 TraesCS4B01G352600 chr1B 97.872 47 1 0 2386 2432 681894888 681894934 5.570000e-12 82.4
25 TraesCS4B01G352600 chr1B 97.778 45 1 0 2386 2430 681892917 681892961 7.210000e-11 78.7
26 TraesCS4B01G352600 chr3B 86.506 1534 109 26 878 2362 636097808 636096324 0.000000e+00 1596.0
27 TraesCS4B01G352600 chr3B 85.294 1530 130 34 878 2362 318290867 318292346 0.000000e+00 1491.0
28 TraesCS4B01G352600 chr3B 95.588 136 6 0 176 311 320732069 320731934 4.070000e-53 219.0
29 TraesCS4B01G352600 chr3B 93.182 88 6 0 331 418 320731944 320731857 1.960000e-26 130.0
30 TraesCS4B01G352600 chr3B 92.857 84 5 1 2264 2346 320729436 320729353 1.180000e-23 121.0
31 TraesCS4B01G352600 chr3B 97.917 48 1 0 2385 2432 636096285 636096238 1.550000e-12 84.2
32 TraesCS4B01G352600 chr4A 86.323 1455 127 27 878 2304 24458592 24460002 0.000000e+00 1519.0
33 TraesCS4B01G352600 chr4A 95.294 85 4 0 488 572 406187965 406187881 4.220000e-28 135.0
34 TraesCS4B01G352600 chr6B 91.519 1073 60 17 336 1407 238445254 238444212 0.000000e+00 1448.0
35 TraesCS4B01G352600 chr6B 93.868 212 11 2 6 215 425112510 425112721 3.900000e-83 318.0
36 TraesCS4B01G352600 chr6B 96.471 85 3 0 488 572 483667081 483666997 9.070000e-30 141.0
37 TraesCS4B01G352600 chr6B 96.386 83 3 0 488 570 483725222 483725140 1.170000e-28 137.0
38 TraesCS4B01G352600 chr7A 84.491 1483 149 31 878 2304 220993484 220994941 0.000000e+00 1389.0
39 TraesCS4B01G352600 chr7A 85.522 1112 120 17 965 2062 578431972 578430888 0.000000e+00 1123.0
40 TraesCS4B01G352600 chr7A 94.516 310 14 2 1 307 220992631 220992940 2.190000e-130 475.0
41 TraesCS4B01G352600 chr7A 100.000 28 0 0 464 491 220992986 220993013 4.000000e-03 52.8
42 TraesCS4B01G352600 chr6D 86.263 1223 126 14 936 2142 202663456 202664652 0.000000e+00 1290.0
43 TraesCS4B01G352600 chr6D 96.026 302 9 2 9 307 446392212 446391911 2.810000e-134 488.0
44 TraesCS4B01G352600 chr6D 97.059 136 4 0 333 468 446391919 446391784 1.880000e-56 230.0
45 TraesCS4B01G352600 chr4D 83.544 1343 125 34 992 2298 410839503 410840785 0.000000e+00 1168.0
46 TraesCS4B01G352600 chr2A 85.202 1115 120 23 965 2062 55076445 55075359 0.000000e+00 1103.0
47 TraesCS4B01G352600 chr2A 91.558 462 17 3 9 468 259675833 259676274 3.440000e-173 617.0
48 TraesCS4B01G352600 chr2A 94.796 269 12 1 26 292 259577242 259577510 3.740000e-113 418.0
49 TraesCS4B01G352600 chr5A 81.886 1336 145 39 992 2300 544898817 544900082 0.000000e+00 1037.0
50 TraesCS4B01G352600 chr5A 90.816 294 21 1 585 878 384013982 384014269 2.930000e-104 388.0
51 TraesCS4B01G352600 chr5A 81.961 510 42 22 1823 2304 384021050 384021537 1.050000e-103 387.0
52 TraesCS4B01G352600 chr5D 95.380 303 12 1 9 309 384519425 384519123 4.700000e-132 481.0
53 TraesCS4B01G352600 chr5D 95.050 303 13 1 9 309 313520722 313520420 2.190000e-130 475.0
54 TraesCS4B01G352600 chr5D 93.091 275 19 0 586 860 16496524 16496250 1.050000e-108 403.0
55 TraesCS4B01G352600 chr5D 97.059 136 4 0 333 468 313520428 313520293 1.880000e-56 230.0
56 TraesCS4B01G352600 chr5D 96.377 138 5 0 331 468 384519133 384518996 6.760000e-56 228.0
57 TraesCS4B01G352600 chr5D 95.294 85 4 0 488 572 16572479 16572395 4.220000e-28 135.0
58 TraesCS4B01G352600 chr5D 90.385 52 3 2 2135 2186 20269825 20269776 1.560000e-07 67.6
59 TraesCS4B01G352600 chr5D 88.889 45 4 1 448 491 20273376 20273332 1.000000e-03 54.7
60 TraesCS4B01G352600 chr5D 88.636 44 4 1 2389 2432 20269789 20269747 4.000000e-03 52.8
61 TraesCS4B01G352600 chr2D 94.909 275 14 0 586 860 397123414 397123688 4.800000e-117 431.0
62 TraesCS4B01G352600 chr1D 92.308 286 14 7 26 309 463801550 463801271 1.350000e-107 399.0
63 TraesCS4B01G352600 chr1D 94.093 237 10 3 624 860 417105665 417105897 8.270000e-95 357.0
64 TraesCS4B01G352600 chr1D 97.826 138 3 0 331 468 463801281 463801144 3.130000e-59 239.0
65 TraesCS4B01G352600 chr1D 100.000 28 0 0 464 491 463801225 463801198 4.000000e-03 52.8
66 TraesCS4B01G352600 chr3A 92.727 275 20 0 586 860 5992893 5992619 4.870000e-107 398.0
67 TraesCS4B01G352600 chr7D 88.852 305 11 3 591 878 17944644 17944346 1.070000e-93 353.0
68 TraesCS4B01G352600 chr7D 97.872 47 1 0 2386 2432 152022566 152022520 5.570000e-12 82.4
69 TraesCS4B01G352600 chr3D 92.537 67 5 0 239 305 571760837 571760771 1.990000e-16 97.1
70 TraesCS4B01G352600 chr3D 95.745 47 2 0 2386 2432 416547526 416547572 2.590000e-10 76.8
71 TraesCS4B01G352600 chr3D 95.745 47 2 0 2386 2432 571758201 571758155 2.590000e-10 76.8
72 TraesCS4B01G352600 chr3D 93.617 47 3 0 2386 2432 416545563 416545609 1.210000e-08 71.3
73 TraesCS4B01G352600 chr3D 93.617 47 3 0 2386 2432 416546874 416546920 1.210000e-08 71.3
74 TraesCS4B01G352600 chr3D 94.286 35 2 0 2398 2432 571758845 571758811 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G352600 chr4B 644593693 644596124 2431 False 2272.400000 4492 100.000000 1 2432 2 chr4B.!!$F4 2431
1 TraesCS4B01G352600 chr4B 613128859 613130017 1158 False 1262.000000 1262 86.375000 878 2056 1 chr4B.!!$F2 1178
2 TraesCS4B01G352600 chr4B 368724962 368726019 1057 False 682.000000 1072 87.903000 3 1154 2 chr4B.!!$F3 1151
3 TraesCS4B01G352600 chr7B 681250220 681251244 1024 False 1064.000000 1064 86.439000 1471 2432 1 chr7B.!!$F2 961
4 TraesCS4B01G352600 chr7B 725302038 725305927 3889 False 855.500000 2902 95.681000 1 2432 4 chr7B.!!$F3 2431
5 TraesCS4B01G352600 chr2B 149795496 149799068 3572 False 676.266667 1864 94.663333 878 2432 3 chr2B.!!$F1 1554
6 TraesCS4B01G352600 chr5B 639286778 639288337 1559 False 1790.000000 1790 87.712000 878 2432 1 chr5B.!!$F4 1554
7 TraesCS4B01G352600 chr5B 482078643 482079864 1221 False 1299.000000 1299 86.334000 1095 2298 1 chr5B.!!$F2 1203
8 TraesCS4B01G352600 chr5B 565307961 565309122 1161 True 1236.000000 1236 85.894000 878 2062 1 chr5B.!!$R1 1184
9 TraesCS4B01G352600 chr1B 681885552 681887010 1458 False 1602.000000 1602 86.835000 878 2340 1 chr1B.!!$F2 1462
10 TraesCS4B01G352600 chr1B 516775380 516776154 774 False 800.000000 800 86.229000 1628 2360 1 chr1B.!!$F1 732
11 TraesCS4B01G352600 chr3B 318290867 318292346 1479 False 1491.000000 1491 85.294000 878 2362 1 chr3B.!!$F1 1484
12 TraesCS4B01G352600 chr3B 636096238 636097808 1570 True 840.100000 1596 92.211500 878 2432 2 chr3B.!!$R2 1554
13 TraesCS4B01G352600 chr4A 24458592 24460002 1410 False 1519.000000 1519 86.323000 878 2304 1 chr4A.!!$F1 1426
14 TraesCS4B01G352600 chr6B 238444212 238445254 1042 True 1448.000000 1448 91.519000 336 1407 1 chr6B.!!$R1 1071
15 TraesCS4B01G352600 chr7A 578430888 578431972 1084 True 1123.000000 1123 85.522000 965 2062 1 chr7A.!!$R1 1097
16 TraesCS4B01G352600 chr7A 220992631 220994941 2310 False 638.933333 1389 93.002333 1 2304 3 chr7A.!!$F1 2303
17 TraesCS4B01G352600 chr6D 202663456 202664652 1196 False 1290.000000 1290 86.263000 936 2142 1 chr6D.!!$F1 1206
18 TraesCS4B01G352600 chr4D 410839503 410840785 1282 False 1168.000000 1168 83.544000 992 2298 1 chr4D.!!$F1 1306
19 TraesCS4B01G352600 chr2A 55075359 55076445 1086 True 1103.000000 1103 85.202000 965 2062 1 chr2A.!!$R1 1097
20 TraesCS4B01G352600 chr5A 544898817 544900082 1265 False 1037.000000 1037 81.886000 992 2300 1 chr5A.!!$F3 1308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1322 2.695359 TGTCCAGTCCTGTTTTATCGC 58.305 47.619 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 2847 1.251251 AAGCTTGGCTGACATTGTCC 58.749 50.0 14.05 0.29 39.62 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 6.763715 ATGCCTTTTATAGTAGACATGGGA 57.236 37.500 0.00 0.00 0.00 4.37
143 147 9.399797 AGATTGAGATTGAATATTTGTGCAGTA 57.600 29.630 0.00 0.00 0.00 2.74
272 305 7.660030 TCTCCACTTATGAACATATCTGTCA 57.340 36.000 0.00 0.00 33.36 3.58
380 588 9.101655 CATATCTTTCCAAATTTGATGGTTTCC 57.898 33.333 19.86 0.00 39.09 3.13
953 1318 8.153221 TCCTATTTATGTCCAGTCCTGTTTTA 57.847 34.615 0.00 0.00 0.00 1.52
954 1319 8.778059 TCCTATTTATGTCCAGTCCTGTTTTAT 58.222 33.333 0.00 0.00 0.00 1.40
955 1320 9.057089 CCTATTTATGTCCAGTCCTGTTTTATC 57.943 37.037 0.00 0.00 0.00 1.75
956 1321 6.978343 TTTATGTCCAGTCCTGTTTTATCG 57.022 37.500 0.00 0.00 0.00 2.92
957 1322 2.695359 TGTCCAGTCCTGTTTTATCGC 58.305 47.619 0.00 0.00 0.00 4.58
1079 1449 7.716998 CAGTAGGCAGGTATATTCAAGACAATT 59.283 37.037 0.00 0.00 0.00 2.32
1266 1637 1.961180 GCAGGCTATGGGACGTGTCT 61.961 60.000 0.00 0.00 0.00 3.41
1267 1638 1.399714 CAGGCTATGGGACGTGTCTA 58.600 55.000 0.00 0.00 0.00 2.59
1308 1679 0.044244 ACATGTACCTAGGGCCTGGT 59.956 55.000 24.62 24.62 40.12 4.00
1347 1718 1.617018 CCCATGACCTGAAGCTCGGA 61.617 60.000 0.00 0.00 0.00 4.55
1372 1743 4.080863 ACTTCCTTGTCTTCCGCTATGATT 60.081 41.667 0.00 0.00 0.00 2.57
1510 1881 4.202060 CCTCTACTAGCACGATGACAACAT 60.202 45.833 0.00 0.00 39.67 2.71
1529 1900 5.833406 ACATCATGTTCACACTTTGTTGA 57.167 34.783 0.00 0.00 0.00 3.18
1593 1964 2.022240 GAGTGGGGATGACGAGGAGC 62.022 65.000 0.00 0.00 0.00 4.70
1594 1965 2.060980 GTGGGGATGACGAGGAGCT 61.061 63.158 0.00 0.00 0.00 4.09
1619 1990 1.067250 GGATGACGAGGAGCAGAGC 59.933 63.158 0.00 0.00 0.00 4.09
1620 1991 1.670949 GGATGACGAGGAGCAGAGCA 61.671 60.000 0.00 0.00 0.00 4.26
1622 1993 1.674764 ATGACGAGGAGCAGAGCAGG 61.675 60.000 0.00 0.00 0.00 4.85
1625 1996 2.784356 CGAGGAGCAGAGCAGGGAG 61.784 68.421 0.00 0.00 0.00 4.30
1628 1999 1.765657 GGAGCAGAGCAGGGAGGAT 60.766 63.158 0.00 0.00 0.00 3.24
1643 2104 0.325484 AGGATGAGGAGCAGAGCAGT 60.325 55.000 0.00 0.00 0.00 4.40
1684 2188 0.534652 GAGCTGCAGCCTATTCTGGG 60.535 60.000 34.39 0.00 43.38 4.45
1685 2189 0.984961 AGCTGCAGCCTATTCTGGGA 60.985 55.000 34.39 0.00 43.38 4.37
1714 2272 1.001020 TTGCTATGGTGGTGGCTGG 60.001 57.895 0.00 0.00 0.00 4.85
1715 2273 1.788518 TTGCTATGGTGGTGGCTGGT 61.789 55.000 0.00 0.00 0.00 4.00
1718 2276 1.133792 GCTATGGTGGTGGCTGGTAAT 60.134 52.381 0.00 0.00 0.00 1.89
1811 2534 2.157738 GATGATGACCTTGCTATGGCC 58.842 52.381 0.00 0.00 37.74 5.36
1830 2553 2.046023 TGCCTGGCAATGACCTCG 60.046 61.111 21.08 0.00 34.76 4.63
1877 2600 3.318839 CACAACTTGGTGACATGACCATT 59.681 43.478 7.08 0.00 45.64 3.16
1895 2618 4.230502 ACCATTCCAATTGTGGTAGAGGAT 59.769 41.667 15.58 0.00 44.08 3.24
1962 2706 2.534990 AGGAGGAGGAGAACAAGTGAG 58.465 52.381 0.00 0.00 0.00 3.51
2082 2847 8.923683 GCTTGTTAGTGTAAACCTCTTAAGTAG 58.076 37.037 1.63 0.00 0.00 2.57
2263 3079 9.850628 GCATGCTCATGTATGAAACAATATAAT 57.149 29.630 11.37 0.00 42.70 1.28
2350 3166 2.472059 CGCCATTCCATGTCACGGG 61.472 63.158 0.00 0.00 0.00 5.28
2375 3192 2.440247 GCCCTAGCCACGGCAAAT 60.440 61.111 11.35 0.00 45.01 2.32
2401 5194 4.510038 AACCAGCATTTCATCACAGAAC 57.490 40.909 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 9.555411 TCCCATGTCTACTATAAAAGGCATATA 57.445 33.333 1.81 0.00 35.92 0.86
143 147 9.850628 CATAAAACAATCTCAATGTTCAGTCAT 57.149 29.630 0.00 0.00 39.98 3.06
341 374 9.699410 TTTGGAAAGATATGTTCATAAGTGGAT 57.301 29.630 0.00 0.00 0.00 3.41
361 394 5.163405 TGTTCGGAAACCATCAAATTTGGAA 60.163 36.000 17.90 7.36 37.69 3.53
362 395 4.342378 TGTTCGGAAACCATCAAATTTGGA 59.658 37.500 17.90 5.66 37.69 3.53
380 588 5.560966 AAAGGTATTAAGGCACATGTTCG 57.439 39.130 0.00 0.00 0.00 3.95
550 758 2.097466 GCAGAACACATAAACCCATCCG 59.903 50.000 0.00 0.00 0.00 4.18
848 1062 6.393990 AGAATAACAACAGCAACAACAACAA 58.606 32.000 0.00 0.00 0.00 2.83
953 1318 8.698854 CATTGTAATTAAACAACAAGTTGCGAT 58.301 29.630 12.54 2.55 41.89 4.58
954 1319 7.306283 GCATTGTAATTAAACAACAAGTTGCGA 60.306 33.333 12.54 0.00 41.89 5.10
955 1320 6.785164 GCATTGTAATTAAACAACAAGTTGCG 59.215 34.615 12.54 0.00 41.89 4.85
956 1321 7.793427 CAGCATTGTAATTAAACAACAAGTTGC 59.207 33.333 12.54 13.33 41.89 4.17
957 1322 7.793427 GCAGCATTGTAATTAAACAACAAGTTG 59.207 33.333 11.16 11.16 41.89 3.16
1079 1449 1.081174 AGAGATGGGTGAAGGGGAGAA 59.919 52.381 0.00 0.00 0.00 2.87
1170 1540 4.572985 CATCTTTGCAAACTTGTCAGGA 57.427 40.909 8.05 1.70 0.00 3.86
1212 1583 0.890996 CCTCCCGCAGCTTCACTTTT 60.891 55.000 0.00 0.00 0.00 2.27
1240 1611 2.136878 CCCATAGCCTGCGACTCCT 61.137 63.158 0.00 0.00 0.00 3.69
1243 1614 2.786495 CGTCCCATAGCCTGCGACT 61.786 63.158 0.00 0.00 31.64 4.18
1254 1625 1.568504 ACACCATAGACACGTCCCAT 58.431 50.000 0.00 0.00 0.00 4.00
1266 1637 3.276109 TCGCCGTCGAACACCATA 58.724 55.556 0.00 0.00 42.44 2.74
1308 1679 2.941616 GCGGGCAAAATGCTCCCAA 61.942 57.895 2.00 0.00 41.93 4.12
1347 1718 0.759346 AGCGGAAGACAAGGAAGTGT 59.241 50.000 0.00 0.00 0.00 3.55
1372 1743 1.958715 CGGTGAACATGGCGTCACA 60.959 57.895 21.02 0.00 35.03 3.58
1429 1800 2.101575 GGCATCGTCGTCGTGCTA 59.898 61.111 20.84 0.00 40.74 3.49
1510 1881 6.534436 CCAAATTCAACAAAGTGTGAACATGA 59.466 34.615 0.00 0.00 0.00 3.07
1529 1900 1.279846 CTCCCATTGCTTGGCCAAATT 59.720 47.619 20.91 1.29 44.97 1.82
1565 1936 1.383803 ATCCCCACTCTGCTCCTCC 60.384 63.158 0.00 0.00 0.00 4.30
1593 1964 2.415010 CTCGTCATCCCCGCTCAG 59.585 66.667 0.00 0.00 0.00 3.35
1594 1965 3.147595 CCTCGTCATCCCCGCTCA 61.148 66.667 0.00 0.00 0.00 4.26
1619 1990 0.398239 TCTGCTCCTCATCCTCCCTG 60.398 60.000 0.00 0.00 0.00 4.45
1620 1991 0.105555 CTCTGCTCCTCATCCTCCCT 60.106 60.000 0.00 0.00 0.00 4.20
1622 1993 1.047596 TGCTCTGCTCCTCATCCTCC 61.048 60.000 0.00 0.00 0.00 4.30
1625 1996 0.179078 CACTGCTCTGCTCCTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
1628 1999 0.607112 CTTCACTGCTCTGCTCCTCA 59.393 55.000 0.00 0.00 0.00 3.86
1643 2104 0.529833 CGCTCTGCTCCTCTTCTTCA 59.470 55.000 0.00 0.00 0.00 3.02
1668 2172 1.126488 TCTCCCAGAATAGGCTGCAG 58.874 55.000 10.11 10.11 34.56 4.41
1684 2188 1.534175 CCATAGCAAGGTCGTCGTCTC 60.534 57.143 0.00 0.00 0.00 3.36
1685 2189 0.456221 CCATAGCAAGGTCGTCGTCT 59.544 55.000 0.00 0.00 0.00 4.18
1714 2272 2.172717 ACCACCATAGCAGGGTCATTAC 59.827 50.000 0.00 0.00 36.19 1.89
1715 2273 2.172505 CACCACCATAGCAGGGTCATTA 59.827 50.000 0.00 0.00 36.19 1.90
1718 2276 1.561769 CCACCACCATAGCAGGGTCA 61.562 60.000 0.00 0.00 36.19 4.02
1789 2431 2.551459 GCCATAGCAAGGTCATCATCAC 59.449 50.000 0.00 0.00 39.53 3.06
1811 2534 2.360350 AGGTCATTGCCAGGCACG 60.360 61.111 15.89 8.88 38.71 5.34
1819 2542 1.815421 ACCATCGCGAGGTCATTGC 60.815 57.895 20.35 0.00 32.90 3.56
1830 2553 3.945434 CAGCGCCATCACCATCGC 61.945 66.667 2.29 0.00 46.95 4.58
1877 2600 6.591935 GATGTAATCCTCTACCACAATTGGA 58.408 40.000 10.83 0.00 40.87 3.53
1962 2706 5.643379 TGCCACTTCATTTCTTAACATCC 57.357 39.130 0.00 0.00 0.00 3.51
2082 2847 1.251251 AAGCTTGGCTGACATTGTCC 58.749 50.000 14.05 0.29 39.62 4.02
2229 3041 6.459670 TCATACATGAGCATGCAGAAAAAT 57.540 33.333 21.98 3.58 42.39 1.82
2235 3051 4.625972 TGTTTCATACATGAGCATGCAG 57.374 40.909 21.98 9.13 42.39 4.41
2401 5194 4.232221 GAGTCATGCAAATCTGTTGTTGG 58.768 43.478 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.