AutoCloner

Multiple sequence alignment - TraesCS4B01G352400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G352400	chr4B	100.000	3811	0	0	1	3811	644475262	644479072	0.000000e+00	7038.0
1	TraesCS4B01G352400	chr4B	93.239	1346	55	12	585	1927	644369259	644367947	0.000000e+00	1949.0
2	TraesCS4B01G352400	chr4B	94.688	1073	42	8	1935	3007	644367246	644366189	0.000000e+00	1652.0
3	TraesCS4B01G352400	chr4B	95.991	449	11	3	145	592	644370220	644369778	0.000000e+00	723.0
4	TraesCS4B01G352400	chr4B	77.821	780	170	3	1013	1792	577016181	577015405	2.660000e-131	479.0
5	TraesCS4B01G352400	chr4B	83.386	319	50	3	2499	2816	577015224	577014908	3.720000e-75	292.0
6	TraesCS4B01G352400	chr4B	92.258	155	9	3	1	152	644371145	644370991	2.310000e-52	217.0
7	TraesCS4B01G352400	chr4D	93.402	1364	57	10	559	1915	500526513	500527850	0.000000e+00	1989.0
8	TraesCS4B01G352400	chr4D	91.765	850	58	3	2181	3019	500528846	500529694	0.000000e+00	1171.0
9	TraesCS4B01G352400	chr4D	95.696	395	11	4	130	522	500525822	500526212	6.950000e-177	630.0
10	TraesCS4B01G352400	chr4D	76.697	781	173	6	1013	1792	461510451	461509679	3.520000e-115	425.0
11	TraesCS4B01G352400	chr4D	76.440	781	175	6	1013	1792	461562117	461561345	7.620000e-112	414.0
12	TraesCS4B01G352400	chr4D	94.309	123	6	1	1	122	500502518	500502640	1.810000e-43	187.0
13	TraesCS4B01G352400	chr4D	90.541	74	6	1	2111	2183	500528651	500528724	3.130000e-16	97.1
14	TraesCS4B01G352400	chr4D	95.833	48	2	0	1943	1990	500528163	500528210	1.140000e-10	78.7
15	TraesCS4B01G352400	chr5A	92.090	1024	69	8	896	1915	681486531	681487546	0.000000e+00	1432.0
16	TraesCS4B01G352400	chr5A	91.399	686	47	5	2345	3019	681487588	681488272	0.000000e+00	929.0
17	TraesCS4B01G352400	chr5A	86.581	544	58	8	1	536	681485599	681486135	1.530000e-163	586.0
18	TraesCS4B01G352400	chr5A	87.288	236	12	9	541	775	681486253	681486471	1.760000e-63	254.0
19	TraesCS4B01G352400	chr5A	93.443	61	4	0	818	878	681486474	681486534	1.460000e-14	91.6
20	TraesCS4B01G352400	chr7B	89.695	1048	75	8	1974	3019	477975398	477976414	0.000000e+00	1306.0
21	TraesCS4B01G352400	chr7B	88.975	644	59	5	907	1546	477971885	477972520	0.000000e+00	785.0
22	TraesCS4B01G352400	chr7B	88.384	396	21	7	1532	1927	477974311	477974681	1.610000e-123	453.0
23	TraesCS4B01G352400	chr7B	93.789	161	10	0	3044	3204	477976387	477976547	3.800000e-60	243.0
24	TraesCS4B01G352400	chr7B	88.108	185	16	4	621	805	477965276	477965454	8.290000e-52	215.0
25	TraesCS4B01G352400	chrUn	92.159	829	53	6	2181	2998	10148710	10149537	0.000000e+00	1160.0
26	TraesCS4B01G352400	chrUn	89.053	338	18	7	1579	1915	10147369	10147688	5.930000e-108	401.0
27	TraesCS4B01G352400	chrUn	80.051	396	72	6	2435	2825	37704327	37703934	1.730000e-73	287.0
28	TraesCS4B01G352400	chrUn	91.228	57	4	1	3204	3259	374328824	374328768	4.080000e-10	76.8
29	TraesCS4B01G352400	chrUn	91.228	57	4	1	3204	3259	397701925	397701869	4.080000e-10	76.8
30	TraesCS4B01G352400	chr6B	94.349	637	10	1	3201	3811	110908807	110909443	0.000000e+00	953.0
31	TraesCS4B01G352400	chr6B	76.280	371	66	14	3204	3566	50993538	50993182	1.090000e-40	178.0
32	TraesCS4B01G352400	chr6B	86.316	95	12	1	2013	2106	603779404	603779498	6.740000e-18	102.0
33	TraesCS4B01G352400	chr4A	77.436	780	167	8	1013	1789	7154365	7155138	1.250000e-124	457.0
34	TraesCS4B01G352400	chr4A	83.537	164	27	0	1028	1191	661050647	661050484	1.830000e-33	154.0
35	TraesCS4B01G352400	chr3D	76.329	790	145	24	1021	1789	507535380	507534612	5.970000e-103	385.0
36	TraesCS4B01G352400	chr3D	81.174	409	70	6	2422	2825	17747000	17746594	4.750000e-84	322.0
37	TraesCS4B01G352400	chr3D	83.388	307	49	2	2507	2812	17777514	17777209	2.240000e-72	283.0
38	TraesCS4B01G352400	chr3D	89.583	96	9	1	2011	2105	483182696	483182601	1.860000e-23	121.0
39	TraesCS4B01G352400	chr3A	81.429	350	59	5	2480	2825	18836322	18835975	8.060000e-72	281.0
40	TraesCS4B01G352400	chr3A	90.000	100	8	2	2013	2111	40496	40398	1.110000e-25	128.0
41	TraesCS4B01G352400	chr3A	90.426	94	8	1	2019	2111	63408	63315	5.170000e-24	122.0
42	TraesCS4B01G352400	chr1D	78.161	435	71	18	3204	3630	20313865	20314283	4.890000e-64	255.0
43	TraesCS4B01G352400	chr1D	90.244	82	7	1	2025	2105	363853969	363853888	5.210000e-19	106.0
44	TraesCS4B01G352400	chr1B	78.205	312	52	11	3201	3507	100994205	100993905	6.500000e-43	185.0
45	TraesCS4B01G352400	chr1B	89.394	66	5	2	3196	3259	6363482	6363547	8.770000e-12	82.4
46	TraesCS4B01G352400	chr1B	91.228	57	4	1	3204	3259	30462703	30462647	4.080000e-10	76.8
47	TraesCS4B01G352400	chr3B	91.753	97	6	2	2013	2108	2478337	2478432	2.390000e-27	134.0
48	TraesCS4B01G352400	chr6A	90.909	99	8	1	2014	2111	132355235	132355333	8.590000e-27	132.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G352400	chr4B	644475262	644479072	3810	False	7038.00	7038	100.00000	1	3811	1	chr4B.!!$F1	3810
1	TraesCS4B01G352400	chr4B	644366189	644371145	4956	True	1135.25	1949	94.04400	1	3007	4	chr4B.!!$R2	3006
2	TraesCS4B01G352400	chr4B	577014908	577016181	1273	True	385.50	479	80.60350	1013	2816	2	chr4B.!!$R1	1803
3	TraesCS4B01G352400	chr4D	500525822	500529694	3872	False	793.16	1989	93.44740	130	3019	5	chr4D.!!$F2	2889
4	TraesCS4B01G352400	chr4D	461509679	461510451	772	True	425.00	425	76.69700	1013	1792	1	chr4D.!!$R1	779
5	TraesCS4B01G352400	chr4D	461561345	461562117	772	True	414.00	414	76.44000	1013	1792	1	chr4D.!!$R2	779
6	TraesCS4B01G352400	chr5A	681485599	681488272	2673	False	658.52	1432	90.16020	1	3019	5	chr5A.!!$F1	3018
7	TraesCS4B01G352400	chr7B	477971885	477976547	4662	False	696.75	1306	90.21075	907	3204	4	chr7B.!!$F2	2297
8	TraesCS4B01G352400	chrUn	10147369	10149537	2168	False	780.50	1160	90.60600	1579	2998	2	chrUn.!!$F1	1419
9	TraesCS4B01G352400	chr6B	110908807	110909443	636	False	953.00	953	94.34900	3201	3811	1	chr6B.!!$F1	610
10	TraesCS4B01G352400	chr4A	7154365	7155138	773	False	457.00	457	77.43600	1013	1789	1	chr4A.!!$F1	776
11	TraesCS4B01G352400	chr3D	507534612	507535380	768	True	385.00	385	76.32900	1021	1789	1	chr3D.!!$R4	768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
894	2636	0.389948	AGTTGCTGCCTGCGTAGTAC	60.390	55.0	0.00	0.00	46.63	2.73	F
1095	2837	0.100682	CCTACCTCACGTCCATGTCG	59.899	60.0	6.09	6.09	0.00	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1701	5270	1.270839	ACACCATCACTCGGGACTTTG	60.271	52.381	0.0	0.0	0.0	2.77	R
2928	7869	0.694771	GACCGACCCCTTAACCCTTT	59.305	55.000	0.0	0.0	0.0	3.11	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
56	58	2.114616	AGGCACAAACAAACCCAATCA	58.885	42.857	0.00	0.00	0.00	2.57
58	60	3.900601	AGGCACAAACAAACCCAATCATA	59.099	39.130	0.00	0.00	0.00	2.15
100	102	7.716799	ATATGCCACCAAAATTCTCAAGTTA	57.283	32.000	0.00	0.00	0.00	2.24
109	111	9.715121	ACCAAAATTCTCAAGTTACGATAAGTA	57.285	29.630	0.00	0.00	0.00	2.24
122	129	4.371786	ACGATAAGTATCACACATGCAGG	58.628	43.478	0.00	0.00	32.98	4.85
123	130	3.185188	CGATAAGTATCACACATGCAGGC	59.815	47.826	0.00	0.00	32.98	4.85
166	953	6.822442	TCAAGGTGTGAGTAATCTGTGTAAA	58.178	36.000	0.00	0.00	0.00	2.01
272	1061	1.298041	CGTTTCACGGTGGTGCAAC	60.298	57.895	8.50	0.00	43.81	4.17
329	1118	6.256757	GGCTAGACACTCACATAAAACAGATC	59.743	42.308	0.00	0.00	0.00	2.75
333	1122	8.682936	AGACACTCACATAAAACAGATCTTTT	57.317	30.769	0.00	0.00	0.00	2.27
734	2434	3.680937	CGCGTCCTTTAATTCCAACAGTA	59.319	43.478	0.00	0.00	0.00	2.74
764	2464	1.603172	GCCTGGTCGTATCATCTTCCG	60.603	57.143	0.00	0.00	0.00	4.30
884	2626	9.533253	AAATATTAAATCATGTTAGTTGCTGCC	57.467	29.630	0.00	0.00	0.00	4.85
886	2628	4.445452	AAATCATGTTAGTTGCTGCCTG	57.555	40.909	0.00	0.00	0.00	4.85
894	2636	0.389948	AGTTGCTGCCTGCGTAGTAC	60.390	55.000	0.00	0.00	46.63	2.73
984	2726	0.764369	ACACAGCCCTGAGACTGGAA	60.764	55.000	1.69	0.00	38.25	3.53
1095	2837	0.100682	CCTACCTCACGTCCATGTCG	59.899	60.000	6.09	6.09	0.00	4.35
1302	3048	0.469331	CCCCGCTGTCCTACATCCTA	60.469	60.000	0.00	0.00	0.00	2.94
1701	5270	3.442996	CCTTCCACAGGTGATCGAC	57.557	57.895	0.00	0.00	37.99	4.20
1812	5382	4.318903	CGACGATATATATGACGCCTCTCC	60.319	50.000	0.00	0.00	0.00	3.71
1871	5456	5.866159	TTTTGGCATGCATGGATATACAA	57.134	34.783	27.34	8.05	0.00	2.41
1927	5514	4.020039	TCCGTTAATTCCCAAAGTGCTCTA	60.020	41.667	0.00	0.00	0.00	2.43
1932	6254	7.065324	CGTTAATTCCCAAAGTGCTCTATACAA	59.935	37.037	0.00	0.00	0.00	2.41
1933	6255	8.398665	GTTAATTCCCAAAGTGCTCTATACAAG	58.601	37.037	0.00	0.00	0.00	3.16
1972	6294	7.381678	CGGTAATAGCTATGTCCTTGACTAAAC	59.618	40.741	7.09	0.00	33.15	2.01
2227	7150	7.616313	TCCTTTTTCTAACAAACAACCAACAT	58.384	30.769	0.00	0.00	0.00	2.71
2415	7346	5.441709	TCTTGTTTCGGTATTGGTTTTCC	57.558	39.130	0.00	0.00	41.14	3.13
2418	7349	2.188062	TTCGGTATTGGTTTTCCGCT	57.812	45.000	0.00	0.00	44.36	5.52
2663	7604	6.289064	AGAGACAATAACTGAAACCGAACTT	58.711	36.000	0.00	0.00	0.00	2.66
2834	7775	0.527817	GCTGCAAATGCTCATCTGGC	60.528	55.000	6.97	0.00	42.66	4.85
2844	7785	0.036952	CTCATCTGGCGTGTGTTCCT	60.037	55.000	0.00	0.00	0.00	3.36
2851	7792	2.811431	CTGGCGTGTGTTCCTTATGAAA	59.189	45.455	0.00	0.00	33.94	2.69
2867	7808	7.040340	TCCTTATGAAAAGCGGTGTGAAATAAA	60.040	33.333	0.00	0.00	0.00	1.40
2907	7848	4.764823	TGCCTTACTCGTCAATGGAAAATT	59.235	37.500	0.00	0.00	0.00	1.82
2908	7849	5.095490	GCCTTACTCGTCAATGGAAAATTG	58.905	41.667	0.00	0.00	0.00	2.32
2919	7860	8.005466	CGTCAATGGAAAATTGAACAAATTCTG	58.995	33.333	2.49	6.91	39.43	3.02
2932	7873	7.930217	TGAACAAATTCTGAAGTAGACAAAGG	58.070	34.615	0.00	0.00	34.43	3.11
2977	7918	3.521560	ACTGTATGCATGTAACCACTCG	58.478	45.455	10.16	0.00	0.00	4.18
2986	7927	5.047847	GCATGTAACCACTCGTATGTATGT	58.952	41.667	0.00	0.00	0.00	2.29
2987	7928	6.183360	TGCATGTAACCACTCGTATGTATGTA	60.183	38.462	0.00	0.00	0.00	2.29
2988	7929	6.866770	GCATGTAACCACTCGTATGTATGTAT	59.133	38.462	0.00	0.00	0.00	2.29
2989	7930	7.148804	GCATGTAACCACTCGTATGTATGTATG	60.149	40.741	0.00	0.00	0.00	2.39
2990	7931	7.337480	TGTAACCACTCGTATGTATGTATGT	57.663	36.000	0.00	0.00	0.00	2.29
2991	7932	8.449251	TGTAACCACTCGTATGTATGTATGTA	57.551	34.615	0.00	0.00	0.00	2.29
2992	7933	9.070179	TGTAACCACTCGTATGTATGTATGTAT	57.930	33.333	0.00	0.00	0.00	2.29
2993	7934	9.338291	GTAACCACTCGTATGTATGTATGTATG	57.662	37.037	0.00	0.00	0.00	2.39
2994	7935	6.387465	ACCACTCGTATGTATGTATGTATGC	58.613	40.000	0.00	0.00	0.00	3.14
2995	7936	6.015772	ACCACTCGTATGTATGTATGTATGCA	60.016	38.462	0.00	0.00	0.00	3.96
2996	7937	7.035612	CCACTCGTATGTATGTATGTATGCAT	58.964	38.462	3.79	3.79	37.23	3.96
2997	7938	7.009540	CCACTCGTATGTATGTATGTATGCATG	59.990	40.741	10.16	0.00	34.82	4.06
2998	7939	6.531594	ACTCGTATGTATGTATGTATGCATGC	59.468	38.462	11.82	11.82	34.82	4.06
3008	7949	7.363205	TGTATGTATGCATGCATGTATGTAC	57.637	36.000	37.43	28.19	41.59	2.90
3009	7950	6.933521	TGTATGTATGCATGCATGTATGTACA	59.066	34.615	37.43	31.07	41.59	2.90
3010	7951	7.607223	TGTATGTATGCATGCATGTATGTACAT	59.393	33.333	37.43	34.03	41.59	2.29
3011	7952	9.097257	GTATGTATGCATGCATGTATGTACATA	57.903	33.333	37.43	33.15	39.29	2.29
3012	7953	8.741603	ATGTATGCATGCATGTATGTACATAT	57.258	30.769	37.43	18.61	38.13	1.78
3013	7954	9.835389	ATGTATGCATGCATGTATGTACATATA	57.165	29.630	37.43	22.77	38.13	0.86
3014	7955	9.835389	TGTATGCATGCATGTATGTACATATAT	57.165	29.630	37.43	17.50	44.57	0.86
3018	7959	9.835389	TGCATGCATGTATGTACATATATATGT	57.165	29.630	27.09	27.09	44.57	2.29
3112	8081	8.231692	TGTTCCAACAATTTGAGATGTTAAGA	57.768	30.769	2.79	0.00	37.66	2.10
3171	8140	6.939730	TGAATAGTTCAGTGGACAAGCATTTA	59.060	34.615	3.90	0.00	34.08	1.40
3255	8224	1.842052	TTTATTTTCCTGTCGGGCCC	58.158	50.000	13.57	13.57	34.39	5.80
3305	8274	2.671963	GTCGGCCCAAACCTCCAC	60.672	66.667	0.00	0.00	0.00	4.02
3490	8459	1.614317	GCACCTGTGGTCAAAGCCTAT	60.614	52.381	0.00	0.00	31.02	2.57
3703	8698	2.024941	CCCTTGCTCTATTCCTTGGGTT	60.025	50.000	0.00	0.00	0.00	4.11
3752	8747	3.310860	AACATGGCCGTCCTCGTCC	62.311	63.158	0.00	0.00	35.51	4.79
3753	8748	4.873129	CATGGCCGTCCTCGTCCG	62.873	72.222	0.00	0.00	37.97	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	19	9.823647	TTGTGCCTTTTTGTAGATTCAATTTTA	57.176	25.926	0.00	0.00	0.00	1.52
77	79	6.348950	CGTAACTTGAGAATTTTGGTGGCATA	60.349	38.462	0.00	0.00	0.00	3.14
100	102	4.371786	CCTGCATGTGTGATACTTATCGT	58.628	43.478	0.00	0.00	35.48	3.73
109	111	0.037160	TGACAGCCTGCATGTGTGAT	59.963	50.000	0.00	0.00	0.00	3.06
122	129	6.348050	CCTTGAGAGTTTCTACAAATGACAGC	60.348	42.308	0.00	0.00	0.00	4.40
123	130	6.708054	ACCTTGAGAGTTTCTACAAATGACAG	59.292	38.462	0.00	0.00	0.00	3.51
374	1164	6.935208	CCTAGTTTACTGTAGGAGCAACTTTT	59.065	38.462	7.04	0.00	38.54	2.27
375	1165	6.042897	ACCTAGTTTACTGTAGGAGCAACTTT	59.957	38.462	7.04	0.00	38.54	2.66
764	2464	1.576421	CGGGAGCTGTTTCTTGCAC	59.424	57.895	0.00	0.00	0.00	4.57
814	2556	3.836949	CCATGCTTTTGTGGACATGTAC	58.163	45.455	0.00	0.00	38.56	2.90
817	2559	1.673626	GGCCATGCTTTTGTGGACATG	60.674	52.381	0.00	0.00	43.32	3.21
884	2626	4.056740	TGCTAGCTAGTAGTACTACGCAG	58.943	47.826	25.34	24.22	40.80	5.18
886	2628	4.057432	ACTGCTAGCTAGTAGTACTACGC	58.943	47.826	34.63	21.51	45.44	4.42
894	2636	5.512082	CGTTTGTGTTACTGCTAGCTAGTAG	59.488	44.000	30.41	30.41	41.13	2.57
984	2726	4.197750	CTGCCATTCTTGCTCTATCACTT	58.802	43.478	0.00	0.00	0.00	3.16
1095	2837	4.819761	TCGATGGCGCACCTGAGC	62.820	66.667	10.83	0.00	40.21	4.26
1302	3048	3.649277	GATGAGCACGCCGTCCACT	62.649	63.158	0.00	0.00	0.00	4.00
1655	5224	1.677576	CATTGCACTTGATATGCGGGT	59.322	47.619	0.00	0.00	46.49	5.28
1701	5270	1.270839	ACACCATCACTCGGGACTTTG	60.271	52.381	0.00	0.00	0.00	2.77
1927	5514	3.117888	ACCGCCTTCATTCCATCTTGTAT	60.118	43.478	0.00	0.00	0.00	2.29
1932	6254	3.864789	ATTACCGCCTTCATTCCATCT	57.135	42.857	0.00	0.00	0.00	2.90
1933	6255	3.437049	GCTATTACCGCCTTCATTCCATC	59.563	47.826	0.00	0.00	0.00	3.51
2415	7346	3.861131	GCATAGGTATTGGTAGTCCAGCG	60.861	52.174	0.00	0.00	45.22	5.18
2418	7349	7.568128	ATTATGCATAGGTATTGGTAGTCCA	57.432	36.000	6.50	0.00	42.66	4.02
2663	7604	4.080687	TGAACATCAGCATGTCCATCAAA	58.919	39.130	0.00	0.00	42.89	2.69
2834	7775	3.479006	CGCTTTTCATAAGGAACACACG	58.521	45.455	0.00	0.00	34.56	4.49
2844	7785	8.873215	TTTTTATTTCACACCGCTTTTCATAA	57.127	26.923	0.00	0.00	0.00	1.90
2907	7848	7.013274	CCCTTTGTCTACTTCAGAATTTGTTCA	59.987	37.037	0.00	0.00	34.17	3.18
2908	7849	7.013369	ACCCTTTGTCTACTTCAGAATTTGTTC	59.987	37.037	0.00	0.00	34.17	3.18
2919	7860	4.042560	ACCCCTTAACCCTTTGTCTACTTC	59.957	45.833	0.00	0.00	0.00	3.01
2928	7869	0.694771	GACCGACCCCTTAACCCTTT	59.305	55.000	0.00	0.00	0.00	3.11
2932	7873	2.125391	GCGACCGACCCCTTAACC	60.125	66.667	0.00	0.00	0.00	2.85
2977	7918	7.977904	ACATGCATGCATACATACATACATAC	58.022	34.615	31.73	0.00	38.05	2.39
2986	7927	9.835389	ATATGTACATACATGCATGCATACATA	57.165	29.630	33.01	33.01	45.77	2.29
2987	7928	8.741603	ATATGTACATACATGCATGCATACAT	57.258	30.769	31.67	31.67	45.77	2.29
2988	7929	9.835389	ATATATGTACATACATGCATGCATACA	57.165	29.630	31.73	28.29	45.77	2.29
2992	7933	9.835389	ACATATATATGTACATACATGCATGCA	57.165	29.630	26.53	25.04	45.77	3.96
2995	7936	8.981647	CGCACATATATATGTACATACATGCAT	58.018	33.333	24.50	4.85	45.77	3.96
2996	7937	7.978975	ACGCACATATATATGTACATACATGCA	59.021	33.333	24.50	0.00	45.77	3.96
2997	7938	8.352752	ACGCACATATATATGTACATACATGC	57.647	34.615	24.50	19.38	45.77	4.06
3003	7944	9.659830	CGTATGTACGCACATATATATGTACAT	57.340	33.333	28.37	28.37	46.62	2.29
3057	7998	8.916628	AACATGCCACATACATACATACATAA	57.083	30.769	0.00	0.00	0.00	1.90
3151	8120	5.072741	ACATAAATGCTTGTCCACTGAACT	58.927	37.500	0.00	0.00	0.00	3.01
3152	8121	5.376854	ACATAAATGCTTGTCCACTGAAC	57.623	39.130	0.00	0.00	0.00	3.18
3155	8124	6.441093	ACATACATAAATGCTTGTCCACTG	57.559	37.500	0.00	0.00	0.00	3.66
3255	8224	1.960040	TATCCCTGTGAGCCAGTGCG	61.960	60.000	0.00	0.00	44.33	5.34
3270	8239	3.181495	CCGACAGGATAAGCGATCTATCC	60.181	52.174	10.26	10.26	41.02	2.59
3305	8274	4.101119	AGGTAAATGATACCCTTCCTGACG	59.899	45.833	1.12	0.00	38.33	4.35
3490	8459	4.464597	CCGATTTGGGGATTTTTCTTACCA	59.535	41.667	0.00	0.00	0.00	3.25
3713	8708	3.958147	ATGCAGAGGCGACGGGTTG	62.958	63.158	0.00	0.00	45.35	3.77

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.