Multiple sequence alignment - TraesCS4B01G352200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G352200 chr4B 100.000 4497 0 0 1 4497 644369870 644365374 0.000000e+00 8305.0
1 TraesCS4B01G352200 chr4B 93.239 1346 55 12 612 1924 644475846 644477188 0.000000e+00 1949.0
2 TraesCS4B01G352200 chr4B 94.532 1079 44 8 2619 3682 644477190 644478268 0.000000e+00 1652.0
3 TraesCS4B01G352200 chr4B 96.942 327 8 2 4173 4497 46923723 46924049 8.500000e-152 547.0
4 TraesCS4B01G352200 chr4B 77.977 781 168 4 1013 1793 577016181 577015405 1.880000e-133 486.0
5 TraesCS4B01G352200 chr4B 83.333 408 36 7 3794 4191 644481555 644481940 9.260000e-92 348.0
6 TraesCS4B01G352200 chr4B 83.386 319 50 3 3185 3502 577015224 577014908 4.400000e-75 292.0
7 TraesCS4B01G352200 chr4B 95.876 97 0 1 1 93 644475757 644475853 2.170000e-33 154.0
8 TraesCS4B01G352200 chr7B 90.102 2162 117 32 1519 3666 477974299 477976377 0.000000e+00 2717.0
9 TraesCS4B01G352200 chr7B 86.986 730 78 8 824 1546 477971801 477972520 0.000000e+00 806.0
10 TraesCS4B01G352200 chr7B 93.297 552 28 5 3640 4191 477976391 477976933 0.000000e+00 806.0
11 TraesCS4B01G352200 chr7B 94.231 520 25 5 93 611 144818593 144819108 0.000000e+00 789.0
12 TraesCS4B01G352200 chr7B 99.026 308 3 0 4190 4497 177546748 177547055 1.830000e-153 553.0
13 TraesCS4B01G352200 chr7B 95.575 339 10 5 4163 4497 336465956 336465619 5.120000e-149 538.0
14 TraesCS4B01G352200 chr7B 87.286 409 33 12 1915 2315 740014698 740015095 2.470000e-122 449.0
15 TraesCS4B01G352200 chr7B 85.230 413 43 11 1919 2317 172368940 172368532 4.190000e-110 409.0
16 TraesCS4B01G352200 chr7B 86.339 183 19 4 650 832 477965278 477965454 1.280000e-45 195.0
17 TraesCS4B01G352200 chr4D 91.210 1331 62 19 612 1909 500526539 500527847 0.000000e+00 1759.0
18 TraesCS4B01G352200 chr4D 92.021 777 50 4 2867 3632 500528846 500529621 0.000000e+00 1081.0
19 TraesCS4B01G352200 chr4D 90.036 562 48 5 3635 4191 500529673 500530231 0.000000e+00 721.0
20 TraesCS4B01G352200 chr4D 76.854 782 171 7 1013 1793 461510451 461509679 2.480000e-117 433.0
21 TraesCS4B01G352200 chr4D 76.598 782 173 7 1013 1793 461562117 461561345 5.380000e-114 422.0
22 TraesCS4B01G352200 chr4D 87.879 330 23 12 2358 2676 500527887 500528210 5.490000e-99 372.0
23 TraesCS4B01G352200 chr4D 91.304 69 5 1 2802 2869 500528656 500528724 4.790000e-15 93.5
24 TraesCS4B01G352200 chr4D 79.487 117 18 3 2524 2636 467817777 467817891 1.340000e-10 78.7
25 TraesCS4B01G352200 chrUn 89.674 1259 95 14 2867 4093 10148710 10149965 0.000000e+00 1572.0
26 TraesCS4B01G352200 chrUn 87.988 333 20 10 1580 1909 10147370 10147685 4.250000e-100 375.0
27 TraesCS4B01G352200 chrUn 88.818 313 21 11 2358 2662 10147725 10148031 5.490000e-99 372.0
28 TraesCS4B01G352200 chr5A 92.544 1073 73 4 841 1909 681486474 681487543 0.000000e+00 1531.0
29 TraesCS4B01G352200 chr5A 89.552 871 51 18 3031 3862 681487588 681488457 0.000000e+00 1068.0
30 TraesCS4B01G352200 chr5A 88.788 330 37 0 3862 4191 681490676 681491005 5.420000e-109 405.0
31 TraesCS4B01G352200 chr5A 84.293 191 13 8 612 802 681486298 681486471 2.150000e-38 171.0
32 TraesCS4B01G352200 chr5A 85.841 113 12 2 2697 2805 350267849 350267961 2.840000e-22 117.0
33 TraesCS4B01G352200 chr2D 80.780 1025 145 32 799 1790 639460004 639461009 0.000000e+00 754.0
34 TraesCS4B01G352200 chr2D 91.171 521 42 3 93 611 33332558 33332040 0.000000e+00 704.0
35 TraesCS4B01G352200 chr3B 92.075 530 31 5 93 612 730628828 730628300 0.000000e+00 736.0
36 TraesCS4B01G352200 chr3B 91.061 537 33 8 91 612 84594347 84594883 0.000000e+00 712.0
37 TraesCS4B01G352200 chr3B 84.167 360 33 15 1915 2267 559876454 559876796 1.210000e-85 327.0
38 TraesCS4B01G352200 chr3B 91.346 104 6 3 2699 2801 2478337 2478438 6.070000e-29 139.0
39 TraesCS4B01G352200 chr5B 90.807 533 46 3 87 617 8964425 8964956 0.000000e+00 710.0
40 TraesCS4B01G352200 chr5B 99.351 308 2 0 4190 4497 686974723 686974416 3.930000e-155 558.0
41 TraesCS4B01G352200 chr5B 99.026 308 3 0 4190 4497 686996806 686996499 1.830000e-153 553.0
42 TraesCS4B01G352200 chr2A 91.082 527 38 6 94 611 191560891 191560365 0.000000e+00 704.0
43 TraesCS4B01G352200 chr2A 99.349 307 2 0 4191 4497 342204648 342204954 1.410000e-154 556.0
44 TraesCS4B01G352200 chr5D 90.595 521 44 5 94 611 324346464 324346982 0.000000e+00 686.0
45 TraesCS4B01G352200 chr5D 85.301 415 45 11 1911 2316 399625010 399624603 9.000000e-112 414.0
46 TraesCS4B01G352200 chr6A 90.267 524 48 3 93 614 181597395 181597917 0.000000e+00 682.0
47 TraesCS4B01G352200 chr6A 75.510 392 60 21 1925 2299 23869927 23869555 4.660000e-35 159.0
48 TraesCS4B01G352200 chr6A 92.079 101 7 1 2700 2799 132355235 132355335 1.690000e-29 141.0
49 TraesCS4B01G352200 chr6A 86.170 94 10 3 2550 2642 610645801 610645710 1.030000e-16 99.0
50 TraesCS4B01G352200 chr3D 90.114 526 48 4 94 617 368009070 368008547 0.000000e+00 680.0
51 TraesCS4B01G352200 chr3D 80.440 409 73 6 3108 3511 17747000 17746594 5.650000e-79 305.0
52 TraesCS4B01G352200 chr3D 82.687 335 54 4 3166 3498 17777541 17777209 1.220000e-75 294.0
53 TraesCS4B01G352200 chr3D 80.048 416 59 17 1910 2312 332488880 332489284 2.050000e-73 287.0
54 TraesCS4B01G352200 chr3D 90.625 96 8 1 2697 2791 483182696 483182601 4.720000e-25 126.0
55 TraesCS4B01G352200 chr6B 99.346 306 2 0 4192 4497 142789517 142789212 5.080000e-154 555.0
56 TraesCS4B01G352200 chr6B 98.403 313 4 1 4185 4497 236412269 236411958 2.360000e-152 549.0
57 TraesCS4B01G352200 chr6B 82.243 107 16 3 2538 2643 229200385 229200489 6.200000e-14 89.8
58 TraesCS4B01G352200 chr1B 99.029 309 3 0 4189 4497 166688448 166688756 5.080000e-154 555.0
59 TraesCS4B01G352200 chr1B 91.304 92 7 1 2699 2789 511445489 511445580 1.700000e-24 124.0
60 TraesCS4B01G352200 chr1B 79.375 160 24 6 1956 2114 9731270 9731421 2.210000e-18 104.0
61 TraesCS4B01G352200 chr1B 85.185 81 10 2 2556 2636 671973543 671973465 1.040000e-11 82.4
62 TraesCS4B01G352200 chr1B 78.400 125 12 7 2186 2299 602242469 602242589 2.900000e-07 67.6
63 TraesCS4B01G352200 chr4A 78.077 780 163 8 1013 1790 7154365 7155138 1.880000e-133 486.0
64 TraesCS4B01G352200 chr6D 85.266 414 35 14 1915 2315 262290887 262290487 1.950000e-108 403.0
65 TraesCS4B01G352200 chr6D 84.000 100 13 3 2538 2636 450493407 450493504 4.790000e-15 93.5
66 TraesCS4B01G352200 chr7A 84.561 421 43 13 1905 2316 264925964 264926371 9.060000e-107 398.0
67 TraesCS4B01G352200 chr7A 85.756 344 30 8 1915 2250 62725535 62725203 3.330000e-91 346.0
68 TraesCS4B01G352200 chr7A 89.474 76 8 0 2561 2636 55130286 55130361 3.700000e-16 97.1
69 TraesCS4B01G352200 chr1D 83.242 364 40 9 1912 2267 296481608 296481958 9.390000e-82 315.0
70 TraesCS4B01G352200 chr3A 80.049 406 71 8 3166 3566 18836322 18835922 4.400000e-75 292.0
71 TraesCS4B01G352200 chr3A 91.176 102 7 2 2699 2799 40496 40396 2.180000e-28 137.0
72 TraesCS4B01G352200 chr3A 91.667 96 7 1 2705 2799 63408 63313 1.020000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G352200 chr4B 644365374 644369870 4496 True 8305.00 8305 100.000000 1 4497 1 chr4B.!!$R1 4496
1 TraesCS4B01G352200 chr4B 644475757 644481940 6183 False 1025.75 1949 91.745000 1 4191 4 chr4B.!!$F2 4190
2 TraesCS4B01G352200 chr4B 577014908 577016181 1273 True 389.00 486 80.681500 1013 3502 2 chr4B.!!$R2 2489
3 TraesCS4B01G352200 chr7B 477971801 477976933 5132 False 1443.00 2717 90.128333 824 4191 3 chr7B.!!$F5 3367
4 TraesCS4B01G352200 chr7B 144818593 144819108 515 False 789.00 789 94.231000 93 611 1 chr7B.!!$F1 518
5 TraesCS4B01G352200 chr4D 500526539 500530231 3692 False 805.30 1759 90.490000 612 4191 5 chr4D.!!$F2 3579
6 TraesCS4B01G352200 chr4D 461509679 461510451 772 True 433.00 433 76.854000 1013 1793 1 chr4D.!!$R1 780
7 TraesCS4B01G352200 chr4D 461561345 461562117 772 True 422.00 422 76.598000 1013 1793 1 chr4D.!!$R2 780
8 TraesCS4B01G352200 chrUn 10147370 10149965 2595 False 773.00 1572 88.826667 1580 4093 3 chrUn.!!$F1 2513
9 TraesCS4B01G352200 chr5A 681486298 681491005 4707 False 793.75 1531 88.794250 612 4191 4 chr5A.!!$F2 3579
10 TraesCS4B01G352200 chr2D 639460004 639461009 1005 False 754.00 754 80.780000 799 1790 1 chr2D.!!$F1 991
11 TraesCS4B01G352200 chr2D 33332040 33332558 518 True 704.00 704 91.171000 93 611 1 chr2D.!!$R1 518
12 TraesCS4B01G352200 chr3B 730628300 730628828 528 True 736.00 736 92.075000 93 612 1 chr3B.!!$R1 519
13 TraesCS4B01G352200 chr3B 84594347 84594883 536 False 712.00 712 91.061000 91 612 1 chr3B.!!$F2 521
14 TraesCS4B01G352200 chr5B 8964425 8964956 531 False 710.00 710 90.807000 87 617 1 chr5B.!!$F1 530
15 TraesCS4B01G352200 chr2A 191560365 191560891 526 True 704.00 704 91.082000 94 611 1 chr2A.!!$R1 517
16 TraesCS4B01G352200 chr5D 324346464 324346982 518 False 686.00 686 90.595000 94 611 1 chr5D.!!$F1 517
17 TraesCS4B01G352200 chr6A 181597395 181597917 522 False 682.00 682 90.267000 93 614 1 chr6A.!!$F2 521
18 TraesCS4B01G352200 chr3D 368008547 368009070 523 True 680.00 680 90.114000 94 617 1 chr3D.!!$R3 523
19 TraesCS4B01G352200 chr4A 7154365 7155138 773 False 486.00 486 78.077000 1013 1790 1 chr4A.!!$F1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 681 1.882167 GCTCTGCTCAGATCCGTGC 60.882 63.158 0.0 0.0 36.76 5.34 F
1724 3624 0.034896 GTCCCGAGTGATGGTGTTGT 59.965 55.000 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 4087 2.133553 TGCGTGCCAATTTTTGTGATG 58.866 42.857 0.00 0.0 0.0 3.07 R
3613 6223 0.887387 GCCGGCCACTTAACACTTCA 60.887 55.000 18.11 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
402 413 3.084039 TGATGGGCTGAGTTGCTAAAAG 58.916 45.455 0.00 0.00 0.00 2.27
458 469 5.399301 TGTTGTTACTAACGAGCTTAACGAC 59.601 40.000 13.70 13.70 34.27 4.34
482 502 3.888934 ACTCGTTAGCTCGTTCGTTAAA 58.111 40.909 0.00 0.00 0.00 1.52
517 550 5.415415 AACGAGCTGAAATCTATGATTGC 57.585 39.130 0.00 0.00 0.00 3.56
648 681 1.882167 GCTCTGCTCAGATCCGTGC 60.882 63.158 0.00 0.00 36.76 5.34
714 747 2.871133 TCCGTATTAGTTGCTGTCGTG 58.129 47.619 0.00 0.00 0.00 4.35
753 786 6.870439 AGTTAAGTAGACGCGTCCTTTAATTT 59.130 34.615 34.08 21.47 0.00 1.82
847 886 2.804647 CGTGTACGCAAGACATATCCA 58.195 47.619 7.29 0.00 43.62 3.41
848 887 2.534349 CGTGTACGCAAGACATATCCAC 59.466 50.000 7.29 0.00 43.62 4.02
851 898 4.570772 GTGTACGCAAGACATATCCACAAT 59.429 41.667 0.39 0.00 43.62 2.71
929 998 6.129393 CAGTAACACAAACGCATGCTATATC 58.871 40.000 17.13 0.00 0.00 1.63
938 1007 6.477669 AACGCATGCTATATCAATCTCTTG 57.522 37.500 17.13 0.00 0.00 3.02
1077 1163 4.694233 CAGCGCCACAGCCTCACT 62.694 66.667 2.29 0.00 38.01 3.41
1284 1375 1.360551 CGGGATCTACAGCCTCACG 59.639 63.158 0.00 0.00 0.00 4.35
1518 1613 2.488545 TGAGACCGACAAGCTCTTCTAC 59.511 50.000 0.00 0.00 0.00 2.59
1523 1618 1.202200 CGACAAGCTCTTCTACGAGGG 60.202 57.143 0.00 0.00 0.00 4.30
1724 3624 0.034896 GTCCCGAGTGATGGTGTTGT 59.965 55.000 0.00 0.00 0.00 3.32
1927 3836 2.262423 ACTCCCAAAGTGCTCTTGTC 57.738 50.000 1.02 0.00 36.65 3.18
1968 3877 6.744112 CACCCTTTGCTACAGTAAAATCAAA 58.256 36.000 0.00 0.00 0.00 2.69
1969 3878 7.206687 CACCCTTTGCTACAGTAAAATCAAAA 58.793 34.615 0.00 0.00 0.00 2.44
2027 3936 6.900568 TTTTCACAACAAACATTGATGTCC 57.099 33.333 3.40 0.00 43.60 4.02
2050 3959 6.036953 TCCTTTTCACATGTGTGCAAAATTTC 59.963 34.615 24.63 0.00 45.25 2.17
2051 3960 6.183360 CCTTTTCACATGTGTGCAAAATTTCA 60.183 34.615 24.63 3.31 45.25 2.69
2078 3987 4.713824 AAATGACATTCATGCAGGTCTG 57.286 40.909 11.26 0.00 37.15 3.51
2082 3991 1.100510 CATTCATGCAGGTCTGGGTG 58.899 55.000 0.00 0.00 0.00 4.61
2172 4081 3.162394 TTTTTGCCCAGGCTTCCAT 57.838 47.368 10.58 0.00 42.51 3.41
2177 4086 2.548464 TGCCCAGGCTTCCATAAATT 57.452 45.000 10.58 0.00 42.51 1.82
2178 4087 2.387757 TGCCCAGGCTTCCATAAATTC 58.612 47.619 10.58 0.00 42.51 2.17
2184 4099 4.646040 CCAGGCTTCCATAAATTCATCACA 59.354 41.667 0.00 0.00 0.00 3.58
2202 4117 2.096811 CACAAAAATTGGCACGCATGTC 60.097 45.455 0.00 0.00 34.12 3.06
2232 4147 6.881602 ACACACCAATGTTTGTTACCAAAAAT 59.118 30.769 0.00 0.00 41.99 1.82
2294 4215 2.324014 AAAGGGTGCGTGTGAGCTCA 62.324 55.000 13.74 13.74 38.13 4.26
2322 4243 3.492102 ATACTCCATGTCCAATTCCGG 57.508 47.619 0.00 0.00 0.00 5.14
2432 4378 8.214472 GCAAAATTTGACCGATTTCTAGAAAAC 58.786 33.333 21.26 17.31 33.56 2.43
2433 4379 9.243637 CAAAATTTGACCGATTTCTAGAAAACA 57.756 29.630 21.26 13.08 33.56 2.83
2961 5561 3.118920 ACACAAACTTACCCTTTGCCAAC 60.119 43.478 0.00 0.00 32.71 3.77
2962 5562 3.100671 ACAAACTTACCCTTTGCCAACA 58.899 40.909 0.00 0.00 32.71 3.33
3131 5738 9.601217 GGACTACCAATACCTATGCATAATTAG 57.399 37.037 8.00 1.19 35.97 1.73
3177 5784 8.773033 ATCCCTCATTATTCATTGCTTAAACT 57.227 30.769 0.00 0.00 0.00 2.66
3226 5836 2.230508 TCTACACTTTTGGAGCGACGAT 59.769 45.455 0.00 0.00 32.96 3.73
3613 6223 9.578439 GAAAATGCAGCAAATTCTTAAGTAGAT 57.422 29.630 0.00 0.00 31.54 1.98
3635 6245 3.943691 TGTTAAGTGGCCGGCCGT 61.944 61.111 39.00 28.32 39.42 5.68
3726 6461 6.270064 AGCTTTGTTGTTTTGGTATGTGTAC 58.730 36.000 0.00 0.00 0.00 2.90
3884 11941 2.210013 AGCACCGCTCTCCTTGTCA 61.210 57.895 0.00 0.00 30.62 3.58
3916 11974 5.670792 TTTTCTCTATGGTTCCTCGCTTA 57.329 39.130 0.00 0.00 0.00 3.09
3970 12028 8.545420 GCAATAGCAAGATTTTCACAATAATGG 58.455 33.333 0.00 0.00 41.58 3.16
3978 12036 7.989826 AGATTTTCACAATAATGGCACTAGTC 58.010 34.615 0.00 0.00 0.00 2.59
3995 12053 7.261325 GCACTAGTCTCAAGAAATAGACATCA 58.739 38.462 0.00 0.00 43.74 3.07
4026 12084 6.780706 TGACAACGATAAGAAAAGAAGACC 57.219 37.500 0.00 0.00 0.00 3.85
4029 12087 4.796038 ACGATAAGAAAAGAAGACCGGA 57.204 40.909 9.46 0.00 0.00 5.14
4045 12103 6.712179 AGACCGGACTAGTAAAATAGAAGG 57.288 41.667 9.46 0.00 0.00 3.46
4046 12104 5.597594 AGACCGGACTAGTAAAATAGAAGGG 59.402 44.000 9.46 0.00 0.00 3.95
4102 12160 4.895297 AGGAAGATGGAAAACACACATTGT 59.105 37.500 0.00 0.00 41.74 2.71
4191 12249 4.473520 CCGCCGGCACTCCTCAAT 62.474 66.667 28.98 0.00 0.00 2.57
4192 12250 3.197790 CGCCGGCACTCCTCAATG 61.198 66.667 28.98 0.98 0.00 2.82
4193 12251 2.045926 GCCGGCACTCCTCAATGT 60.046 61.111 24.80 0.00 0.00 2.71
4194 12252 1.675641 GCCGGCACTCCTCAATGTT 60.676 57.895 24.80 0.00 0.00 2.71
4195 12253 1.926511 GCCGGCACTCCTCAATGTTG 61.927 60.000 24.80 0.00 0.00 3.33
4196 12254 1.308069 CCGGCACTCCTCAATGTTGG 61.308 60.000 0.00 0.00 0.00 3.77
4197 12255 1.308069 CGGCACTCCTCAATGTTGGG 61.308 60.000 0.00 0.00 0.00 4.12
4206 12264 1.737793 CTCAATGTTGGGGAACGTAGC 59.262 52.381 0.00 0.00 0.00 3.58
4207 12265 1.072489 TCAATGTTGGGGAACGTAGCA 59.928 47.619 0.00 0.00 0.00 3.49
4208 12266 1.468520 CAATGTTGGGGAACGTAGCAG 59.531 52.381 0.00 0.00 0.00 4.24
4209 12267 0.981183 ATGTTGGGGAACGTAGCAGA 59.019 50.000 0.00 0.00 0.00 4.26
4210 12268 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
4211 12269 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
4212 12270 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
4213 12271 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
4214 12272 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
4215 12273 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
4216 12274 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
4217 12275 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
4218 12276 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
4219 12277 5.336451 GGGGAACGTAGCAGAAATTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
4220 12278 6.156519 GGGAACGTAGCAGAAATTCAAAATT 58.843 36.000 0.00 0.00 0.00 1.82
4221 12279 6.645003 GGGAACGTAGCAGAAATTCAAAATTT 59.355 34.615 0.00 0.00 0.00 1.82
4222 12280 7.170828 GGGAACGTAGCAGAAATTCAAAATTTT 59.829 33.333 0.00 0.00 0.00 1.82
4223 12281 8.214472 GGAACGTAGCAGAAATTCAAAATTTTC 58.786 33.333 0.00 0.00 33.08 2.29
4224 12282 7.637709 ACGTAGCAGAAATTCAAAATTTTCC 57.362 32.000 0.00 0.00 33.30 3.13
4225 12283 7.433680 ACGTAGCAGAAATTCAAAATTTTCCT 58.566 30.769 0.00 0.86 33.30 3.36
4226 12284 8.573035 ACGTAGCAGAAATTCAAAATTTTCCTA 58.427 29.630 0.00 0.00 33.30 2.94
4227 12285 8.850452 CGTAGCAGAAATTCAAAATTTTCCTAC 58.150 33.333 0.00 13.60 33.30 3.18
4228 12286 7.873739 AGCAGAAATTCAAAATTTTCCTACG 57.126 32.000 0.00 0.00 33.30 3.51
4229 12287 7.433680 AGCAGAAATTCAAAATTTTCCTACGT 58.566 30.769 0.00 0.00 33.30 3.57
4230 12288 7.382218 AGCAGAAATTCAAAATTTTCCTACGTG 59.618 33.333 0.00 0.00 33.30 4.49
4231 12289 7.169140 GCAGAAATTCAAAATTTTCCTACGTGT 59.831 33.333 0.00 0.00 33.30 4.49
4232 12290 8.690840 CAGAAATTCAAAATTTTCCTACGTGTC 58.309 33.333 0.00 0.00 33.30 3.67
4233 12291 8.410141 AGAAATTCAAAATTTTCCTACGTGTCA 58.590 29.630 0.00 0.00 33.30 3.58
4234 12292 7.924103 AATTCAAAATTTTCCTACGTGTCAC 57.076 32.000 0.00 0.00 0.00 3.67
4235 12293 5.427036 TCAAAATTTTCCTACGTGTCACC 57.573 39.130 0.00 0.00 0.00 4.02
4236 12294 4.882427 TCAAAATTTTCCTACGTGTCACCA 59.118 37.500 0.00 0.00 0.00 4.17
4237 12295 5.357314 TCAAAATTTTCCTACGTGTCACCAA 59.643 36.000 0.00 0.00 0.00 3.67
4238 12296 5.432885 AAATTTTCCTACGTGTCACCAAG 57.567 39.130 0.00 0.00 0.00 3.61
4239 12297 3.823281 TTTTCCTACGTGTCACCAAGA 57.177 42.857 0.00 0.00 0.00 3.02
4240 12298 4.345859 TTTTCCTACGTGTCACCAAGAT 57.654 40.909 0.00 0.00 0.00 2.40
4241 12299 3.587797 TTCCTACGTGTCACCAAGATC 57.412 47.619 0.00 0.00 0.00 2.75
4242 12300 2.803956 TCCTACGTGTCACCAAGATCT 58.196 47.619 0.00 0.00 0.00 2.75
4243 12301 3.959293 TCCTACGTGTCACCAAGATCTA 58.041 45.455 0.00 0.00 0.00 1.98
4244 12302 4.533815 TCCTACGTGTCACCAAGATCTAT 58.466 43.478 0.00 0.00 0.00 1.98
4245 12303 4.579340 TCCTACGTGTCACCAAGATCTATC 59.421 45.833 0.00 0.00 0.00 2.08
4246 12304 4.580995 CCTACGTGTCACCAAGATCTATCT 59.419 45.833 0.00 0.00 39.22 1.98
4247 12305 5.763698 CCTACGTGTCACCAAGATCTATCTA 59.236 44.000 0.00 0.00 35.76 1.98
4248 12306 6.431543 CCTACGTGTCACCAAGATCTATCTAT 59.568 42.308 0.00 0.00 35.76 1.98
4249 12307 6.078202 ACGTGTCACCAAGATCTATCTATG 57.922 41.667 0.00 0.00 35.76 2.23
4250 12308 5.010112 ACGTGTCACCAAGATCTATCTATGG 59.990 44.000 8.57 8.57 39.18 2.74
4251 12309 5.241728 CGTGTCACCAAGATCTATCTATGGA 59.758 44.000 15.80 0.00 37.92 3.41
4252 12310 6.569418 CGTGTCACCAAGATCTATCTATGGAG 60.569 46.154 15.80 8.98 37.92 3.86
4253 12311 6.491745 GTGTCACCAAGATCTATCTATGGAGA 59.508 42.308 15.80 10.97 37.92 3.71
4254 12312 7.014711 GTGTCACCAAGATCTATCTATGGAGAA 59.985 40.741 15.80 3.96 36.96 2.87
4255 12313 7.565029 TGTCACCAAGATCTATCTATGGAGAAA 59.435 37.037 15.80 6.93 36.96 2.52
4256 12314 7.870445 GTCACCAAGATCTATCTATGGAGAAAC 59.130 40.741 15.80 5.75 36.96 2.78
4257 12315 7.015682 TCACCAAGATCTATCTATGGAGAAACC 59.984 40.741 15.80 0.00 37.92 3.27
4258 12316 6.846505 ACCAAGATCTATCTATGGAGAAACCA 59.153 38.462 15.80 0.00 44.28 3.67
4259 12317 7.016072 ACCAAGATCTATCTATGGAGAAACCAG 59.984 40.741 15.80 0.00 43.76 4.00
4260 12318 6.873076 CAAGATCTATCTATGGAGAAACCAGC 59.127 42.308 0.00 0.00 43.76 4.85
4261 12319 6.556495 AAGATCTATCTATGGAGAAACCAGCA 59.444 38.462 0.00 0.00 43.76 4.41
4262 12320 7.071698 AAGATCTATCTATGGAGAAACCAGCAA 59.928 37.037 0.00 0.00 43.76 3.91
4266 12324 3.305709 TGGAGAAACCAGCAACGAG 57.694 52.632 0.00 0.00 44.64 4.18
4267 12325 0.250295 TGGAGAAACCAGCAACGAGG 60.250 55.000 0.00 0.00 44.64 4.63
4268 12326 0.034896 GGAGAAACCAGCAACGAGGA 59.965 55.000 0.00 0.00 38.79 3.71
4269 12327 1.433534 GAGAAACCAGCAACGAGGAG 58.566 55.000 0.00 0.00 0.00 3.69
4270 12328 1.000955 GAGAAACCAGCAACGAGGAGA 59.999 52.381 0.00 0.00 0.00 3.71
4271 12329 1.416401 AGAAACCAGCAACGAGGAGAA 59.584 47.619 0.00 0.00 0.00 2.87
4272 12330 1.801178 GAAACCAGCAACGAGGAGAAG 59.199 52.381 0.00 0.00 0.00 2.85
4273 12331 0.035458 AACCAGCAACGAGGAGAAGG 59.965 55.000 0.00 0.00 0.00 3.46
4274 12332 0.832135 ACCAGCAACGAGGAGAAGGA 60.832 55.000 0.00 0.00 0.00 3.36
4275 12333 0.108424 CCAGCAACGAGGAGAAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
4276 12334 0.891373 CAGCAACGAGGAGAAGGAGA 59.109 55.000 0.00 0.00 0.00 3.71
4277 12335 1.135141 CAGCAACGAGGAGAAGGAGAG 60.135 57.143 0.00 0.00 0.00 3.20
4278 12336 0.892063 GCAACGAGGAGAAGGAGAGT 59.108 55.000 0.00 0.00 0.00 3.24
4279 12337 1.403514 GCAACGAGGAGAAGGAGAGTG 60.404 57.143 0.00 0.00 0.00 3.51
4280 12338 0.892063 AACGAGGAGAAGGAGAGTGC 59.108 55.000 0.00 0.00 0.00 4.40
4281 12339 0.251386 ACGAGGAGAAGGAGAGTGCA 60.251 55.000 0.00 0.00 0.00 4.57
4282 12340 1.110442 CGAGGAGAAGGAGAGTGCAT 58.890 55.000 0.00 0.00 0.00 3.96
4283 12341 1.066908 CGAGGAGAAGGAGAGTGCATC 59.933 57.143 0.00 0.00 0.00 3.91
4284 12342 2.387757 GAGGAGAAGGAGAGTGCATCT 58.612 52.381 0.00 0.00 42.61 2.90
4285 12343 3.561143 GAGGAGAAGGAGAGTGCATCTA 58.439 50.000 0.00 0.00 38.84 1.98
4286 12344 3.295973 AGGAGAAGGAGAGTGCATCTAC 58.704 50.000 0.00 0.00 38.84 2.59
4287 12345 3.027412 GGAGAAGGAGAGTGCATCTACA 58.973 50.000 9.98 0.00 42.01 2.74
4288 12346 3.640967 GGAGAAGGAGAGTGCATCTACAT 59.359 47.826 9.98 0.00 42.01 2.29
4289 12347 4.830046 GGAGAAGGAGAGTGCATCTACATA 59.170 45.833 9.98 0.00 42.01 2.29
4290 12348 5.278758 GGAGAAGGAGAGTGCATCTACATAC 60.279 48.000 9.98 2.98 42.01 2.39
4291 12349 4.586841 AGAAGGAGAGTGCATCTACATACC 59.413 45.833 9.98 3.25 42.01 2.73
4292 12350 3.235200 AGGAGAGTGCATCTACATACCC 58.765 50.000 9.98 2.71 42.01 3.69
4293 12351 3.116939 AGGAGAGTGCATCTACATACCCT 60.117 47.826 9.98 4.47 42.01 4.34
4294 12352 3.643792 GGAGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 38.94 3.95
4295 12353 4.502259 GGAGAGTGCATCTACATACCCTTG 60.502 50.000 0.00 0.00 38.94 3.61
4296 12354 4.033709 AGAGTGCATCTACATACCCTTGT 58.966 43.478 0.00 0.00 36.10 3.16
4297 12355 5.208890 AGAGTGCATCTACATACCCTTGTA 58.791 41.667 0.00 0.00 36.10 2.41
4298 12356 5.303078 AGAGTGCATCTACATACCCTTGTAG 59.697 44.000 5.47 5.47 46.85 2.74
4307 12365 5.786264 ACATACCCTTGTAGATCGGTAAG 57.214 43.478 0.00 0.00 34.62 2.34
4308 12366 4.038883 ACATACCCTTGTAGATCGGTAAGC 59.961 45.833 0.00 0.00 34.62 3.09
4309 12367 1.407979 ACCCTTGTAGATCGGTAAGCG 59.592 52.381 0.00 0.00 0.00 4.68
4310 12368 1.269621 CCCTTGTAGATCGGTAAGCGG 60.270 57.143 0.00 0.00 0.00 5.52
4311 12369 1.679680 CCTTGTAGATCGGTAAGCGGA 59.320 52.381 0.00 0.00 0.00 5.54
4312 12370 2.100252 CCTTGTAGATCGGTAAGCGGAA 59.900 50.000 0.00 0.00 0.00 4.30
4313 12371 3.372954 CTTGTAGATCGGTAAGCGGAAG 58.627 50.000 0.00 0.00 0.00 3.46
4334 12392 2.249844 GTTCAAGAGAACGGGGTTGA 57.750 50.000 0.00 0.00 44.11 3.18
4335 12393 2.567985 GTTCAAGAGAACGGGGTTGAA 58.432 47.619 0.00 0.00 44.11 2.69
4336 12394 2.543777 TCAAGAGAACGGGGTTGAAG 57.456 50.000 0.00 0.00 0.00 3.02
4337 12395 1.071699 TCAAGAGAACGGGGTTGAAGG 59.928 52.381 0.00 0.00 0.00 3.46
4338 12396 1.071699 CAAGAGAACGGGGTTGAAGGA 59.928 52.381 0.00 0.00 0.00 3.36
4339 12397 0.977395 AGAGAACGGGGTTGAAGGAG 59.023 55.000 0.00 0.00 0.00 3.69
4340 12398 0.685660 GAGAACGGGGTTGAAGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
4341 12399 0.685660 AGAACGGGGTTGAAGGAGTC 59.314 55.000 0.00 0.00 0.00 3.36
4342 12400 0.669625 GAACGGGGTTGAAGGAGTCG 60.670 60.000 0.00 0.00 0.00 4.18
4343 12401 1.405272 AACGGGGTTGAAGGAGTCGT 61.405 55.000 0.00 0.00 0.00 4.34
4344 12402 0.540365 ACGGGGTTGAAGGAGTCGTA 60.540 55.000 0.00 0.00 0.00 3.43
4345 12403 0.108945 CGGGGTTGAAGGAGTCGTAC 60.109 60.000 0.00 0.00 0.00 3.67
4346 12404 1.264295 GGGGTTGAAGGAGTCGTACT 58.736 55.000 0.00 0.00 0.00 2.73
4347 12405 1.204231 GGGGTTGAAGGAGTCGTACTC 59.796 57.143 6.50 6.50 44.32 2.59
4348 12406 1.135460 GGGTTGAAGGAGTCGTACTCG 60.135 57.143 8.33 0.00 45.96 4.18
4349 12407 1.538950 GGTTGAAGGAGTCGTACTCGT 59.461 52.381 8.33 6.65 45.96 4.18
4350 12408 2.413897 GGTTGAAGGAGTCGTACTCGTC 60.414 54.545 9.54 9.15 45.96 4.20
4351 12409 1.073964 TGAAGGAGTCGTACTCGTCG 58.926 55.000 9.54 0.00 45.96 5.12
4352 12410 1.074752 GAAGGAGTCGTACTCGTCGT 58.925 55.000 9.54 0.00 45.96 4.34
4353 12411 0.795085 AAGGAGTCGTACTCGTCGTG 59.205 55.000 9.54 0.00 45.96 4.35
4354 12412 0.037882 AGGAGTCGTACTCGTCGTGA 60.038 55.000 0.56 0.00 45.96 4.35
4355 12413 1.005340 GGAGTCGTACTCGTCGTGAT 58.995 55.000 0.56 0.00 45.96 3.06
4356 12414 1.005137 GGAGTCGTACTCGTCGTGATC 60.005 57.143 0.56 0.00 45.96 2.92
4357 12415 1.005137 GAGTCGTACTCGTCGTGATCC 60.005 57.143 0.56 0.00 35.28 3.36
4358 12416 0.723414 GTCGTACTCGTCGTGATCCA 59.277 55.000 0.56 0.00 38.33 3.41
4359 12417 1.129251 GTCGTACTCGTCGTGATCCAA 59.871 52.381 0.56 0.00 38.33 3.53
4360 12418 1.805943 TCGTACTCGTCGTGATCCAAA 59.194 47.619 0.56 0.00 38.33 3.28
4361 12419 2.421073 TCGTACTCGTCGTGATCCAAAT 59.579 45.455 0.56 0.00 38.33 2.32
4362 12420 2.782192 CGTACTCGTCGTGATCCAAATC 59.218 50.000 0.56 0.00 0.00 2.17
4363 12421 3.729762 CGTACTCGTCGTGATCCAAATCA 60.730 47.826 0.56 0.00 39.63 2.57
4364 12422 7.861595 TCGTACTCGTCGTGATCCAAATCAC 62.862 48.000 8.20 8.20 45.52 3.06
4372 12430 3.475566 TGATCCAAATCACCGGAGATC 57.524 47.619 15.13 10.62 36.98 2.75
4373 12431 2.104792 TGATCCAAATCACCGGAGATCC 59.895 50.000 15.13 2.03 36.98 3.36
4374 12432 1.879575 TCCAAATCACCGGAGATCCT 58.120 50.000 15.13 2.86 0.00 3.24
4375 12433 3.040655 TCCAAATCACCGGAGATCCTA 57.959 47.619 15.13 0.00 0.00 2.94
4376 12434 2.965831 TCCAAATCACCGGAGATCCTAG 59.034 50.000 15.13 5.05 0.00 3.02
4377 12435 2.700897 CCAAATCACCGGAGATCCTAGT 59.299 50.000 15.13 0.00 0.00 2.57
4378 12436 3.493350 CCAAATCACCGGAGATCCTAGTG 60.493 52.174 15.13 10.95 0.00 2.74
4379 12437 1.333177 ATCACCGGAGATCCTAGTGC 58.667 55.000 9.46 0.00 0.00 4.40
4380 12438 0.755698 TCACCGGAGATCCTAGTGCC 60.756 60.000 9.46 0.00 0.00 5.01
4381 12439 1.828660 ACCGGAGATCCTAGTGCCG 60.829 63.158 9.46 0.00 41.53 5.69
4382 12440 1.528542 CCGGAGATCCTAGTGCCGA 60.529 63.158 0.00 0.00 44.43 5.54
4383 12441 1.107538 CCGGAGATCCTAGTGCCGAA 61.108 60.000 0.00 0.00 44.43 4.30
4384 12442 0.030908 CGGAGATCCTAGTGCCGAAC 59.969 60.000 0.00 0.00 44.43 3.95
4385 12443 0.030908 GGAGATCCTAGTGCCGAACG 59.969 60.000 0.00 0.00 0.00 3.95
4386 12444 0.030908 GAGATCCTAGTGCCGAACGG 59.969 60.000 9.00 9.00 38.57 4.44
4387 12445 0.395311 AGATCCTAGTGCCGAACGGA 60.395 55.000 17.63 0.00 37.50 4.69
4388 12446 0.248949 GATCCTAGTGCCGAACGGAC 60.249 60.000 17.63 11.59 37.50 4.79
4389 12447 2.001361 ATCCTAGTGCCGAACGGACG 62.001 60.000 17.63 0.00 37.50 4.79
4406 12464 3.723348 GGCACCTCCGCGTTCAAC 61.723 66.667 4.92 0.00 0.00 3.18
4407 12465 2.970324 GCACCTCCGCGTTCAACA 60.970 61.111 4.92 0.00 0.00 3.33
4408 12466 2.935955 CACCTCCGCGTTCAACAC 59.064 61.111 4.92 0.00 0.00 3.32
4409 12467 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
4410 12468 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
4411 12469 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
4412 12470 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
4413 12471 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
4414 12472 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
4415 12473 1.481019 CCGCGTTCAACACACGTACA 61.481 55.000 4.92 0.00 39.92 2.90
4416 12474 0.111878 CGCGTTCAACACACGTACAG 60.112 55.000 0.00 0.00 39.92 2.74
4417 12475 0.382636 GCGTTCAACACACGTACAGC 60.383 55.000 0.00 0.00 39.92 4.40
4418 12476 0.231279 CGTTCAACACACGTACAGCC 59.769 55.000 0.00 0.00 32.80 4.85
4419 12477 0.584876 GTTCAACACACGTACAGCCC 59.415 55.000 0.00 0.00 0.00 5.19
4420 12478 0.876777 TTCAACACACGTACAGCCCG 60.877 55.000 0.00 0.00 0.00 6.13
4421 12479 2.029964 AACACACGTACAGCCCGG 59.970 61.111 0.00 0.00 0.00 5.73
4422 12480 2.799452 AACACACGTACAGCCCGGT 61.799 57.895 0.00 0.00 0.00 5.28
4423 12481 2.736995 CACACGTACAGCCCGGTG 60.737 66.667 0.00 0.00 0.00 4.94
4424 12482 2.913578 ACACGTACAGCCCGGTGA 60.914 61.111 0.00 0.00 0.00 4.02
4425 12483 2.431942 CACGTACAGCCCGGTGAC 60.432 66.667 0.00 0.00 0.00 3.67
4442 12500 2.579201 CGTCTCCCACGCCTTGAT 59.421 61.111 0.00 0.00 42.87 2.57
4443 12501 1.519455 CGTCTCCCACGCCTTGATC 60.519 63.158 0.00 0.00 42.87 2.92
4444 12502 1.153349 GTCTCCCACGCCTTGATCC 60.153 63.158 0.00 0.00 0.00 3.36
4445 12503 1.612146 TCTCCCACGCCTTGATCCA 60.612 57.895 0.00 0.00 0.00 3.41
4446 12504 1.153289 CTCCCACGCCTTGATCCAG 60.153 63.158 0.00 0.00 0.00 3.86
4447 12505 2.825836 CCCACGCCTTGATCCAGC 60.826 66.667 0.00 0.00 0.00 4.85
4448 12506 2.046023 CCACGCCTTGATCCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
4449 12507 1.675310 CCACGCCTTGATCCAGCAA 60.675 57.895 0.00 0.00 0.00 3.91
4450 12508 1.651240 CCACGCCTTGATCCAGCAAG 61.651 60.000 0.00 0.00 43.74 4.01
4459 12517 4.468829 TCCAGCAAGGAGAGAGGG 57.531 61.111 0.00 0.00 43.07 4.30
4460 12518 1.783708 TCCAGCAAGGAGAGAGGGA 59.216 57.895 0.00 0.00 43.07 4.20
4461 12519 0.325110 TCCAGCAAGGAGAGAGGGAG 60.325 60.000 0.00 0.00 43.07 4.30
4462 12520 0.325110 CCAGCAAGGAGAGAGGGAGA 60.325 60.000 0.00 0.00 41.22 3.71
4463 12521 1.113788 CAGCAAGGAGAGAGGGAGAG 58.886 60.000 0.00 0.00 0.00 3.20
4464 12522 0.032217 AGCAAGGAGAGAGGGAGAGG 60.032 60.000 0.00 0.00 0.00 3.69
4465 12523 0.325203 GCAAGGAGAGAGGGAGAGGT 60.325 60.000 0.00 0.00 0.00 3.85
4466 12524 1.899438 GCAAGGAGAGAGGGAGAGGTT 60.899 57.143 0.00 0.00 0.00 3.50
4467 12525 1.830477 CAAGGAGAGAGGGAGAGGTTG 59.170 57.143 0.00 0.00 0.00 3.77
4468 12526 1.388174 AGGAGAGAGGGAGAGGTTGA 58.612 55.000 0.00 0.00 0.00 3.18
4469 12527 1.287739 AGGAGAGAGGGAGAGGTTGAG 59.712 57.143 0.00 0.00 0.00 3.02
4470 12528 1.687996 GGAGAGAGGGAGAGGTTGAGG 60.688 61.905 0.00 0.00 0.00 3.86
4471 12529 1.286553 GAGAGAGGGAGAGGTTGAGGA 59.713 57.143 0.00 0.00 0.00 3.71
4472 12530 1.719378 AGAGAGGGAGAGGTTGAGGAA 59.281 52.381 0.00 0.00 0.00 3.36
4473 12531 2.107366 GAGAGGGAGAGGTTGAGGAAG 58.893 57.143 0.00 0.00 0.00 3.46
4474 12532 1.719378 AGAGGGAGAGGTTGAGGAAGA 59.281 52.381 0.00 0.00 0.00 2.87
4475 12533 1.828595 GAGGGAGAGGTTGAGGAAGAC 59.171 57.143 0.00 0.00 0.00 3.01
4476 12534 1.435168 AGGGAGAGGTTGAGGAAGACT 59.565 52.381 0.00 0.00 0.00 3.24
4477 12535 1.828595 GGGAGAGGTTGAGGAAGACTC 59.171 57.143 0.00 0.00 46.78 3.36
4478 12536 1.828595 GGAGAGGTTGAGGAAGACTCC 59.171 57.143 0.00 0.00 46.01 3.85
4479 12537 2.530701 GAGAGGTTGAGGAAGACTCCA 58.469 52.381 0.00 0.00 46.01 3.86
4480 12538 3.103742 GAGAGGTTGAGGAAGACTCCAT 58.896 50.000 0.00 0.00 46.01 3.41
4481 12539 3.103742 AGAGGTTGAGGAAGACTCCATC 58.896 50.000 0.00 0.00 46.01 3.51
4482 12540 2.169561 GAGGTTGAGGAAGACTCCATCC 59.830 54.545 0.00 0.00 46.01 3.51
4483 12541 1.909302 GGTTGAGGAAGACTCCATCCA 59.091 52.381 0.00 0.00 46.01 3.41
4484 12542 2.093235 GGTTGAGGAAGACTCCATCCAG 60.093 54.545 0.00 0.00 46.01 3.86
4485 12543 1.198713 TGAGGAAGACTCCATCCAGC 58.801 55.000 0.00 0.00 46.01 4.85
4486 12544 1.198713 GAGGAAGACTCCATCCAGCA 58.801 55.000 0.00 0.00 45.24 4.41
4487 12545 1.138661 GAGGAAGACTCCATCCAGCAG 59.861 57.143 0.00 0.00 45.24 4.24
4488 12546 0.463474 GGAAGACTCCATCCAGCAGC 60.463 60.000 0.00 0.00 41.96 5.25
4489 12547 0.251354 GAAGACTCCATCCAGCAGCA 59.749 55.000 0.00 0.00 0.00 4.41
4490 12548 0.252479 AAGACTCCATCCAGCAGCAG 59.748 55.000 0.00 0.00 0.00 4.24
4491 12549 1.818785 GACTCCATCCAGCAGCAGC 60.819 63.158 0.00 0.00 42.56 5.25
4492 12550 2.271173 CTCCATCCAGCAGCAGCA 59.729 61.111 3.17 0.00 45.49 4.41
4493 12551 2.045634 TCCATCCAGCAGCAGCAC 60.046 61.111 3.17 0.00 45.49 4.40
4494 12552 2.360726 CCATCCAGCAGCAGCACA 60.361 61.111 3.17 0.00 45.49 4.57
4495 12553 1.974875 CCATCCAGCAGCAGCACAA 60.975 57.895 3.17 0.00 45.49 3.33
4496 12554 1.211969 CATCCAGCAGCAGCACAAC 59.788 57.895 3.17 0.00 45.49 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 90 1.201429 AGTCCACCCCTACTTGCAGG 61.201 60.000 0.00 0.00 35.26 4.85
206 211 2.029844 GCTTCAAACGAGCCGAGCT 61.030 57.895 1.50 0.00 43.88 4.09
282 292 6.070251 ACCACACCTACACATTCATCATCTTA 60.070 38.462 0.00 0.00 0.00 2.10
283 293 5.188434 CCACACCTACACATTCATCATCTT 58.812 41.667 0.00 0.00 0.00 2.40
285 295 4.517285 ACCACACCTACACATTCATCATC 58.483 43.478 0.00 0.00 0.00 2.92
402 413 9.478019 CATATTTTCATCTTACGTGACAAAGTC 57.522 33.333 0.00 0.00 0.00 3.01
458 469 1.396301 ACGAACGAGCTAACGAGTAGG 59.604 52.381 1.33 0.00 37.03 3.18
517 550 3.308323 GCTCGCTTCTTAATGAACAGAGG 59.692 47.826 0.00 0.00 35.47 3.69
648 681 4.424566 GTGGGCCATGCTTGCGTG 62.425 66.667 10.70 7.76 0.00 5.34
714 747 7.201688 CGTCTACTTAACTTCTAACTACCTCCC 60.202 44.444 0.00 0.00 0.00 4.30
753 786 1.589630 CCGGGATCGTGACTGTTGA 59.410 57.895 0.00 0.00 33.95 3.18
841 880 2.042162 GGAGGGCCATGATTGTGGATAT 59.958 50.000 6.18 0.00 42.02 1.63
844 883 1.213619 TGGAGGGCCATGATTGTGGA 61.214 55.000 6.18 0.00 42.02 4.02
845 884 1.307309 TGGAGGGCCATGATTGTGG 59.693 57.895 6.18 0.00 39.92 4.17
897 965 2.096417 CGTTTGTGTTACTGCCAGCTAC 60.096 50.000 0.00 0.00 0.00 3.58
903 971 1.685302 CATGCGTTTGTGTTACTGCC 58.315 50.000 0.00 0.00 0.00 4.85
929 998 2.281517 CTCAGCTGGCTCAAGAGATTG 58.718 52.381 15.13 0.00 0.00 2.67
938 1007 2.086869 TGTAAATTGCTCAGCTGGCTC 58.913 47.619 22.36 10.26 0.00 4.70
1077 1163 0.036765 GTGCCATGGACGTCAGGTAA 60.037 55.000 18.40 6.19 0.00 2.85
1263 1354 3.214250 GAGGCTGTAGATCCCGGCG 62.214 68.421 0.00 0.00 34.96 6.46
1284 1375 1.068250 GAGGATGTAGGACAGCGGC 59.932 63.158 0.00 0.00 34.89 6.53
1724 3624 2.658373 TCGCCAGCGACATAGTTAAA 57.342 45.000 11.27 0.00 44.01 1.52
1839 3743 4.066490 TCCATGCATGCCAAAAAGAAAAG 58.934 39.130 21.69 2.87 0.00 2.27
1888 3797 6.825213 GGGAGTTAACGGACCATATTAGTTTT 59.175 38.462 16.72 0.00 0.00 2.43
1909 3818 2.149578 CTGACAAGAGCACTTTGGGAG 58.850 52.381 0.00 0.00 33.70 4.30
2008 3917 6.534436 TGAAAAGGACATCAATGTTTGTTGTG 59.466 34.615 8.28 0.54 42.05 3.33
2020 3929 8.296232 TTTGCACACATGTGAAAAGGACATCA 62.296 38.462 31.94 10.43 45.81 3.07
2050 3959 5.290885 CCTGCATGAATGTCATTTTGTCATG 59.709 40.000 16.16 16.16 45.40 3.07
2051 3960 5.046878 ACCTGCATGAATGTCATTTTGTCAT 60.047 36.000 0.00 0.00 34.28 3.06
2091 4000 8.223177 TCATTTTGGAGCATTGATTTTGTTTT 57.777 26.923 0.00 0.00 0.00 2.43
2092 4001 7.804843 TCATTTTGGAGCATTGATTTTGTTT 57.195 28.000 0.00 0.00 0.00 2.83
2093 4002 7.989416 ATCATTTTGGAGCATTGATTTTGTT 57.011 28.000 0.00 0.00 0.00 2.83
2102 4011 6.771749 TGTTTTTGGAATCATTTTGGAGCATT 59.228 30.769 0.00 0.00 0.00 3.56
2154 4063 2.317371 TATGGAAGCCTGGGCAAAAA 57.683 45.000 14.39 0.00 44.88 1.94
2162 4071 5.840243 TGTGATGAATTTATGGAAGCCTG 57.160 39.130 0.00 0.00 0.00 4.85
2167 4076 8.728833 GCCAATTTTTGTGATGAATTTATGGAA 58.271 29.630 0.00 0.00 0.00 3.53
2172 4081 6.347240 GCGTGCCAATTTTTGTGATGAATTTA 60.347 34.615 0.00 0.00 0.00 1.40
2177 4086 2.223900 TGCGTGCCAATTTTTGTGATGA 60.224 40.909 0.00 0.00 0.00 2.92
2178 4087 2.133553 TGCGTGCCAATTTTTGTGATG 58.866 42.857 0.00 0.00 0.00 3.07
2184 4099 2.522836 TGACATGCGTGCCAATTTTT 57.477 40.000 5.64 0.00 0.00 1.94
2277 4198 2.721971 CTTGAGCTCACACGCACCCT 62.722 60.000 18.03 0.00 0.00 4.34
2294 4215 7.885399 GGAATTGGACATGGAGTATATAAGCTT 59.115 37.037 3.48 3.48 0.00 3.74
2388 4332 8.424274 AATTTTGCTAAGTTTGACTTTTGGAG 57.576 30.769 0.00 0.00 39.51 3.86
3029 5629 5.968167 AGTTCCCTTTGTCCTATGTGGTATA 59.032 40.000 0.00 0.00 37.07 1.47
3131 5738 8.478877 AGGGATATGGAAGTTATCGACATAATC 58.521 37.037 0.00 0.00 0.00 1.75
3177 5784 8.906867 CAAGCTGGAATGGAAAGAATCTATAAA 58.093 33.333 0.00 0.00 0.00 1.40
3613 6223 0.887387 GCCGGCCACTTAACACTTCA 60.887 55.000 18.11 0.00 0.00 3.02
3625 6235 0.978151 ATACATAATACGGCCGGCCA 59.022 50.000 42.78 27.27 35.37 5.36
3726 6461 9.540431 CCACTAAACAATTCAAAAACAAAGTTG 57.460 29.630 0.00 0.00 0.00 3.16
3884 11941 6.887002 GGAACCATAGAGAAAATTGGAGAAGT 59.113 38.462 0.00 0.00 33.36 3.01
3916 11974 1.873591 GTCACGGAAGAGTGCAACAAT 59.126 47.619 0.00 0.00 41.43 2.71
3970 12028 7.221838 GTGATGTCTATTTCTTGAGACTAGTGC 59.778 40.741 0.00 0.00 42.21 4.40
3978 12036 6.871844 TCTCCAGTGATGTCTATTTCTTGAG 58.128 40.000 0.00 0.00 0.00 3.02
3995 12053 5.661056 TTCTTATCGTTGTCATCTCCAGT 57.339 39.130 0.00 0.00 0.00 4.00
4026 12084 8.251721 CCATATCCCTTCTATTTTACTAGTCCG 58.748 40.741 0.00 0.00 0.00 4.79
4045 12103 6.293626 CGACCATTGATTGAACTTCCATATCC 60.294 42.308 0.00 0.00 0.00 2.59
4046 12104 6.260936 ACGACCATTGATTGAACTTCCATATC 59.739 38.462 0.00 0.00 0.00 1.63
4102 12160 2.080286 GCAAACTCTAGCCTTGTCGA 57.920 50.000 0.00 0.00 0.00 4.20
4191 12249 0.759959 TTCTGCTACGTTCCCCAACA 59.240 50.000 0.00 0.00 32.14 3.33
4192 12250 1.886886 TTTCTGCTACGTTCCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
4193 12251 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
4194 12252 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
4195 12253 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
4196 12254 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
4197 12255 7.637709 AAATTTTGAATTTCTGCTACGTTCC 57.362 32.000 0.00 0.00 0.00 3.62
4198 12256 8.214472 GGAAAATTTTGAATTTCTGCTACGTTC 58.786 33.333 8.47 0.00 36.15 3.95
4199 12257 7.926018 AGGAAAATTTTGAATTTCTGCTACGTT 59.074 29.630 8.47 0.00 36.15 3.99
4200 12258 7.433680 AGGAAAATTTTGAATTTCTGCTACGT 58.566 30.769 8.47 0.00 36.15 3.57
4201 12259 7.873739 AGGAAAATTTTGAATTTCTGCTACG 57.126 32.000 8.47 0.00 36.15 3.51
4202 12260 8.850452 CGTAGGAAAATTTTGAATTTCTGCTAC 58.150 33.333 8.47 6.07 36.15 3.58
4203 12261 8.573035 ACGTAGGAAAATTTTGAATTTCTGCTA 58.427 29.630 8.47 0.00 36.15 3.49
4204 12262 7.382218 CACGTAGGAAAATTTTGAATTTCTGCT 59.618 33.333 8.47 0.00 36.15 4.24
4205 12263 7.169140 ACACGTAGGAAAATTTTGAATTTCTGC 59.831 33.333 8.47 0.00 36.15 4.26
4206 12264 8.574196 ACACGTAGGAAAATTTTGAATTTCTG 57.426 30.769 8.47 0.00 36.15 3.02
4207 12265 8.410141 TGACACGTAGGAAAATTTTGAATTTCT 58.590 29.630 8.47 0.00 36.15 2.52
4208 12266 8.476925 GTGACACGTAGGAAAATTTTGAATTTC 58.523 33.333 8.47 0.00 35.33 2.17
4209 12267 7.436970 GGTGACACGTAGGAAAATTTTGAATTT 59.563 33.333 8.47 0.00 0.00 1.82
4210 12268 6.921307 GGTGACACGTAGGAAAATTTTGAATT 59.079 34.615 8.47 0.00 0.00 2.17
4211 12269 6.039941 TGGTGACACGTAGGAAAATTTTGAAT 59.960 34.615 8.47 0.00 33.40 2.57
4212 12270 5.357314 TGGTGACACGTAGGAAAATTTTGAA 59.643 36.000 8.47 0.00 33.40 2.69
4213 12271 4.882427 TGGTGACACGTAGGAAAATTTTGA 59.118 37.500 8.47 0.00 33.40 2.69
4214 12272 5.176407 TGGTGACACGTAGGAAAATTTTG 57.824 39.130 8.47 0.00 33.40 2.44
4215 12273 5.591067 TCTTGGTGACACGTAGGAAAATTTT 59.409 36.000 2.28 2.28 42.67 1.82
4216 12274 5.127491 TCTTGGTGACACGTAGGAAAATTT 58.873 37.500 0.00 0.00 42.67 1.82
4217 12275 4.710324 TCTTGGTGACACGTAGGAAAATT 58.290 39.130 0.00 0.00 42.67 1.82
4218 12276 4.345859 TCTTGGTGACACGTAGGAAAAT 57.654 40.909 0.00 0.00 42.67 1.82
4219 12277 3.823281 TCTTGGTGACACGTAGGAAAA 57.177 42.857 0.00 0.00 42.67 2.29
4220 12278 3.576982 AGATCTTGGTGACACGTAGGAAA 59.423 43.478 0.00 0.00 42.67 3.13
4221 12279 3.162666 AGATCTTGGTGACACGTAGGAA 58.837 45.455 0.00 0.00 42.67 3.36
4222 12280 2.803956 AGATCTTGGTGACACGTAGGA 58.196 47.619 0.00 0.00 42.67 2.94
4223 12281 4.580995 AGATAGATCTTGGTGACACGTAGG 59.419 45.833 0.00 0.00 42.67 3.18
4224 12282 5.759506 AGATAGATCTTGGTGACACGTAG 57.240 43.478 0.00 0.00 42.67 3.51
4225 12283 6.206829 CCATAGATAGATCTTGGTGACACGTA 59.793 42.308 0.00 0.00 42.67 3.57
4226 12284 5.010112 CCATAGATAGATCTTGGTGACACGT 59.990 44.000 0.00 0.00 42.67 4.49
4227 12285 5.241728 TCCATAGATAGATCTTGGTGACACG 59.758 44.000 0.00 0.00 42.67 4.49
4228 12286 6.491745 TCTCCATAGATAGATCTTGGTGACAC 59.508 42.308 0.00 0.00 42.67 3.67
4229 12287 6.614657 TCTCCATAGATAGATCTTGGTGACA 58.385 40.000 0.00 0.00 38.32 3.58
4230 12288 7.531857 TTCTCCATAGATAGATCTTGGTGAC 57.468 40.000 12.54 0.00 37.34 3.67
4231 12289 7.015682 GGTTTCTCCATAGATAGATCTTGGTGA 59.984 40.741 0.00 5.80 36.71 4.02
4232 12290 7.158021 GGTTTCTCCATAGATAGATCTTGGTG 58.842 42.308 0.00 3.27 36.89 4.17
4233 12291 6.846505 TGGTTTCTCCATAGATAGATCTTGGT 59.153 38.462 0.00 0.00 41.93 3.67
4234 12292 7.308450 TGGTTTCTCCATAGATAGATCTTGG 57.692 40.000 0.00 1.69 41.93 3.61
4235 12293 6.873076 GCTGGTTTCTCCATAGATAGATCTTG 59.127 42.308 0.00 0.00 46.12 3.02
4236 12294 6.556495 TGCTGGTTTCTCCATAGATAGATCTT 59.444 38.462 0.00 0.00 46.12 2.40
4237 12295 6.080682 TGCTGGTTTCTCCATAGATAGATCT 58.919 40.000 0.00 0.00 46.12 2.75
4238 12296 6.352016 TGCTGGTTTCTCCATAGATAGATC 57.648 41.667 0.00 0.00 46.12 2.75
4239 12297 6.529220 GTTGCTGGTTTCTCCATAGATAGAT 58.471 40.000 0.00 0.00 46.12 1.98
4240 12298 5.451937 CGTTGCTGGTTTCTCCATAGATAGA 60.452 44.000 0.00 0.00 46.12 1.98
4241 12299 4.747108 CGTTGCTGGTTTCTCCATAGATAG 59.253 45.833 0.00 0.00 46.12 2.08
4242 12300 4.404394 TCGTTGCTGGTTTCTCCATAGATA 59.596 41.667 0.00 0.00 46.12 1.98
4243 12301 3.197766 TCGTTGCTGGTTTCTCCATAGAT 59.802 43.478 0.00 0.00 46.12 1.98
4244 12302 2.565391 TCGTTGCTGGTTTCTCCATAGA 59.435 45.455 0.00 0.00 46.12 1.98
4245 12303 2.932614 CTCGTTGCTGGTTTCTCCATAG 59.067 50.000 0.00 0.00 46.12 2.23
4246 12304 2.354704 CCTCGTTGCTGGTTTCTCCATA 60.355 50.000 0.00 0.00 46.12 2.74
4247 12305 1.611673 CCTCGTTGCTGGTTTCTCCAT 60.612 52.381 0.00 0.00 46.12 3.41
4248 12306 0.250295 CCTCGTTGCTGGTTTCTCCA 60.250 55.000 0.00 0.00 45.01 3.86
4249 12307 0.034896 TCCTCGTTGCTGGTTTCTCC 59.965 55.000 0.00 0.00 0.00 3.71
4250 12308 1.000955 TCTCCTCGTTGCTGGTTTCTC 59.999 52.381 0.00 0.00 0.00 2.87
4251 12309 1.048601 TCTCCTCGTTGCTGGTTTCT 58.951 50.000 0.00 0.00 0.00 2.52
4252 12310 1.801178 CTTCTCCTCGTTGCTGGTTTC 59.199 52.381 0.00 0.00 0.00 2.78
4253 12311 1.543429 CCTTCTCCTCGTTGCTGGTTT 60.543 52.381 0.00 0.00 0.00 3.27
4254 12312 0.035458 CCTTCTCCTCGTTGCTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
4255 12313 0.832135 TCCTTCTCCTCGTTGCTGGT 60.832 55.000 0.00 0.00 0.00 4.00
4256 12314 0.108424 CTCCTTCTCCTCGTTGCTGG 60.108 60.000 0.00 0.00 0.00 4.85
4257 12315 0.891373 TCTCCTTCTCCTCGTTGCTG 59.109 55.000 0.00 0.00 0.00 4.41
4258 12316 1.181786 CTCTCCTTCTCCTCGTTGCT 58.818 55.000 0.00 0.00 0.00 3.91
4259 12317 0.892063 ACTCTCCTTCTCCTCGTTGC 59.108 55.000 0.00 0.00 0.00 4.17
4260 12318 1.403514 GCACTCTCCTTCTCCTCGTTG 60.404 57.143 0.00 0.00 0.00 4.10
4261 12319 0.892063 GCACTCTCCTTCTCCTCGTT 59.108 55.000 0.00 0.00 0.00 3.85
4262 12320 0.251386 TGCACTCTCCTTCTCCTCGT 60.251 55.000 0.00 0.00 0.00 4.18
4263 12321 1.066908 GATGCACTCTCCTTCTCCTCG 59.933 57.143 0.00 0.00 0.00 4.63
4264 12322 2.387757 AGATGCACTCTCCTTCTCCTC 58.612 52.381 0.00 0.00 0.00 3.71
4265 12323 2.548464 AGATGCACTCTCCTTCTCCT 57.452 50.000 0.00 0.00 0.00 3.69
4266 12324 3.027412 TGTAGATGCACTCTCCTTCTCC 58.973 50.000 0.00 0.00 35.28 3.71
4267 12325 4.935352 ATGTAGATGCACTCTCCTTCTC 57.065 45.455 0.00 0.00 35.28 2.87
4268 12326 4.586841 GGTATGTAGATGCACTCTCCTTCT 59.413 45.833 0.00 0.00 35.28 2.85
4269 12327 4.262249 GGGTATGTAGATGCACTCTCCTTC 60.262 50.000 0.00 0.00 35.28 3.46
4270 12328 3.643792 GGGTATGTAGATGCACTCTCCTT 59.356 47.826 0.00 0.00 35.28 3.36
4271 12329 3.116939 AGGGTATGTAGATGCACTCTCCT 60.117 47.826 0.00 0.00 35.28 3.69
4272 12330 3.235200 AGGGTATGTAGATGCACTCTCC 58.765 50.000 0.00 0.00 35.28 3.71
4273 12331 4.100189 ACAAGGGTATGTAGATGCACTCTC 59.900 45.833 0.00 0.00 35.28 3.20
4274 12332 4.033709 ACAAGGGTATGTAGATGCACTCT 58.966 43.478 0.00 0.00 38.06 3.24
4275 12333 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
4283 12341 9.630088 CGCTTACCGATCTACAAGGGTATGTAG 62.630 48.148 7.91 7.91 45.19 2.74
4284 12342 5.242393 GCTTACCGATCTACAAGGGTATGTA 59.758 44.000 8.75 0.00 35.14 2.29
4285 12343 4.038883 GCTTACCGATCTACAAGGGTATGT 59.961 45.833 8.75 0.00 35.14 2.29
4286 12344 4.557205 GCTTACCGATCTACAAGGGTATG 58.443 47.826 0.00 0.00 35.14 2.39
4287 12345 3.255149 CGCTTACCGATCTACAAGGGTAT 59.745 47.826 0.00 0.00 40.02 2.73
4288 12346 2.620115 CGCTTACCGATCTACAAGGGTA 59.380 50.000 0.00 0.00 40.02 3.69
4289 12347 1.407979 CGCTTACCGATCTACAAGGGT 59.592 52.381 0.00 0.00 40.02 4.34
4290 12348 1.269621 CCGCTTACCGATCTACAAGGG 60.270 57.143 0.00 0.00 40.02 3.95
4291 12349 1.679680 TCCGCTTACCGATCTACAAGG 59.320 52.381 0.00 0.00 40.02 3.61
4292 12350 3.372954 CTTCCGCTTACCGATCTACAAG 58.627 50.000 0.00 0.00 40.02 3.16
4293 12351 2.480759 GCTTCCGCTTACCGATCTACAA 60.481 50.000 0.00 0.00 40.02 2.41
4294 12352 1.066605 GCTTCCGCTTACCGATCTACA 59.933 52.381 0.00 0.00 40.02 2.74
4295 12353 1.768510 GCTTCCGCTTACCGATCTAC 58.231 55.000 0.00 0.00 40.02 2.59
4296 12354 0.309922 CGCTTCCGCTTACCGATCTA 59.690 55.000 0.00 0.00 40.02 1.98
4297 12355 1.065928 CGCTTCCGCTTACCGATCT 59.934 57.895 0.00 0.00 40.02 2.75
4298 12356 0.804933 AACGCTTCCGCTTACCGATC 60.805 55.000 0.00 0.00 40.02 3.69
4299 12357 0.804933 GAACGCTTCCGCTTACCGAT 60.805 55.000 0.00 0.00 40.02 4.18
4300 12358 1.444895 GAACGCTTCCGCTTACCGA 60.445 57.895 0.00 0.00 40.02 4.69
4301 12359 1.286354 TTGAACGCTTCCGCTTACCG 61.286 55.000 0.00 0.00 38.22 4.02
4302 12360 0.442699 CTTGAACGCTTCCGCTTACC 59.557 55.000 0.00 0.00 38.22 2.85
4303 12361 1.390463 CTCTTGAACGCTTCCGCTTAC 59.610 52.381 0.00 0.00 38.22 2.34
4304 12362 1.271379 TCTCTTGAACGCTTCCGCTTA 59.729 47.619 0.00 0.00 38.22 3.09
4305 12363 0.033504 TCTCTTGAACGCTTCCGCTT 59.966 50.000 0.00 0.00 38.22 4.68
4306 12364 0.033504 TTCTCTTGAACGCTTCCGCT 59.966 50.000 0.00 0.00 38.22 5.52
4307 12365 0.164002 GTTCTCTTGAACGCTTCCGC 59.836 55.000 0.00 0.00 42.39 5.54
4315 12373 2.249844 TCAACCCCGTTCTCTTGAAC 57.750 50.000 0.00 0.00 46.59 3.18
4316 12374 2.486548 CCTTCAACCCCGTTCTCTTGAA 60.487 50.000 0.00 0.00 32.90 2.69
4317 12375 1.071699 CCTTCAACCCCGTTCTCTTGA 59.928 52.381 0.00 0.00 0.00 3.02
4318 12376 1.071699 TCCTTCAACCCCGTTCTCTTG 59.928 52.381 0.00 0.00 0.00 3.02
4319 12377 1.348036 CTCCTTCAACCCCGTTCTCTT 59.652 52.381 0.00 0.00 0.00 2.85
4320 12378 0.977395 CTCCTTCAACCCCGTTCTCT 59.023 55.000 0.00 0.00 0.00 3.10
4321 12379 0.685660 ACTCCTTCAACCCCGTTCTC 59.314 55.000 0.00 0.00 0.00 2.87
4322 12380 0.685660 GACTCCTTCAACCCCGTTCT 59.314 55.000 0.00 0.00 0.00 3.01
4323 12381 0.669625 CGACTCCTTCAACCCCGTTC 60.670 60.000 0.00 0.00 0.00 3.95
4324 12382 1.370064 CGACTCCTTCAACCCCGTT 59.630 57.895 0.00 0.00 0.00 4.44
4325 12383 0.540365 TACGACTCCTTCAACCCCGT 60.540 55.000 0.00 0.00 0.00 5.28
4326 12384 0.108945 GTACGACTCCTTCAACCCCG 60.109 60.000 0.00 0.00 0.00 5.73
4327 12385 1.204231 GAGTACGACTCCTTCAACCCC 59.796 57.143 0.00 0.00 39.28 4.95
4328 12386 1.135460 CGAGTACGACTCCTTCAACCC 60.135 57.143 8.73 0.00 42.12 4.11
4329 12387 1.538950 ACGAGTACGACTCCTTCAACC 59.461 52.381 8.73 0.00 42.12 3.77
4330 12388 2.724228 CGACGAGTACGACTCCTTCAAC 60.724 54.545 8.73 0.00 42.12 3.18
4331 12389 1.462283 CGACGAGTACGACTCCTTCAA 59.538 52.381 8.73 0.00 42.12 2.69
4332 12390 1.073964 CGACGAGTACGACTCCTTCA 58.926 55.000 8.73 0.00 42.12 3.02
4333 12391 1.074752 ACGACGAGTACGACTCCTTC 58.925 55.000 0.00 5.74 42.12 3.46
4334 12392 0.795085 CACGACGAGTACGACTCCTT 59.205 55.000 0.00 0.00 42.12 3.36
4335 12393 0.037882 TCACGACGAGTACGACTCCT 60.038 55.000 0.00 0.00 42.12 3.69
4336 12394 1.005137 GATCACGACGAGTACGACTCC 60.005 57.143 0.00 0.00 42.12 3.85
4337 12395 1.005137 GGATCACGACGAGTACGACTC 60.005 57.143 0.00 0.00 41.71 3.36
4338 12396 1.005340 GGATCACGACGAGTACGACT 58.995 55.000 0.00 0.00 42.66 4.18
4339 12397 0.723414 TGGATCACGACGAGTACGAC 59.277 55.000 0.00 0.00 42.66 4.34
4340 12398 1.441738 TTGGATCACGACGAGTACGA 58.558 50.000 0.00 0.00 42.66 3.43
4341 12399 2.251869 TTTGGATCACGACGAGTACG 57.748 50.000 0.00 0.00 45.75 3.67
4342 12400 3.766151 TGATTTGGATCACGACGAGTAC 58.234 45.455 0.00 0.00 37.37 2.73
4352 12410 2.104792 GGATCTCCGGTGATTTGGATCA 59.895 50.000 19.47 0.00 39.92 2.92
4353 12411 2.370189 AGGATCTCCGGTGATTTGGATC 59.630 50.000 19.47 7.17 42.08 3.36
4354 12412 2.412591 AGGATCTCCGGTGATTTGGAT 58.587 47.619 19.47 0.00 42.08 3.41
4355 12413 1.879575 AGGATCTCCGGTGATTTGGA 58.120 50.000 19.47 0.40 42.08 3.53
4356 12414 2.700897 ACTAGGATCTCCGGTGATTTGG 59.299 50.000 19.47 14.63 42.08 3.28
4357 12415 3.722147 CACTAGGATCTCCGGTGATTTG 58.278 50.000 19.47 12.17 42.60 2.32
4358 12416 2.103263 GCACTAGGATCTCCGGTGATTT 59.897 50.000 19.47 13.39 42.60 2.17
4359 12417 1.689273 GCACTAGGATCTCCGGTGATT 59.311 52.381 19.47 8.05 42.60 2.57
4360 12418 1.333177 GCACTAGGATCTCCGGTGAT 58.667 55.000 18.63 18.63 42.60 3.06
4361 12419 0.755698 GGCACTAGGATCTCCGGTGA 60.756 60.000 21.08 8.96 42.60 4.02
4362 12420 1.742768 GGCACTAGGATCTCCGGTG 59.257 63.158 0.00 15.88 42.73 4.94
4363 12421 1.828660 CGGCACTAGGATCTCCGGT 60.829 63.158 0.00 0.00 42.08 5.28
4364 12422 1.107538 TTCGGCACTAGGATCTCCGG 61.108 60.000 0.00 0.00 42.08 5.14
4365 12423 0.030908 GTTCGGCACTAGGATCTCCG 59.969 60.000 0.00 0.00 42.08 4.63
4366 12424 0.030908 CGTTCGGCACTAGGATCTCC 59.969 60.000 0.00 0.00 0.00 3.71
4367 12425 0.030908 CCGTTCGGCACTAGGATCTC 59.969 60.000 0.00 0.00 0.00 2.75
4368 12426 0.395311 TCCGTTCGGCACTAGGATCT 60.395 55.000 6.35 0.00 0.00 2.75
4369 12427 0.248949 GTCCGTTCGGCACTAGGATC 60.249 60.000 6.35 0.00 33.15 3.36
4370 12428 1.814527 GTCCGTTCGGCACTAGGAT 59.185 57.895 6.35 0.00 33.15 3.24
4371 12429 2.693762 CGTCCGTTCGGCACTAGGA 61.694 63.158 6.35 0.00 0.00 2.94
4372 12430 2.202570 CGTCCGTTCGGCACTAGG 60.203 66.667 6.35 0.00 0.00 3.02
4373 12431 2.202570 CCGTCCGTTCGGCACTAG 60.203 66.667 6.35 0.00 43.96 2.57
4389 12447 3.723348 GTTGAACGCGGAGGTGCC 61.723 66.667 12.47 0.00 0.00 5.01
4390 12448 2.970324 TGTTGAACGCGGAGGTGC 60.970 61.111 12.47 0.00 0.00 5.01
4391 12449 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
4392 12450 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
4393 12451 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
4398 12456 0.382636 GCTGTACGTGTGTTGAACGC 60.383 55.000 1.20 1.20 44.80 4.84
4399 12457 0.231279 GGCTGTACGTGTGTTGAACG 59.769 55.000 0.00 0.00 46.32 3.95
4400 12458 0.584876 GGGCTGTACGTGTGTTGAAC 59.415 55.000 0.00 0.00 0.00 3.18
4401 12459 0.876777 CGGGCTGTACGTGTGTTGAA 60.877 55.000 0.00 0.00 0.00 2.69
4402 12460 1.300311 CGGGCTGTACGTGTGTTGA 60.300 57.895 0.00 0.00 0.00 3.18
4403 12461 2.314647 CCGGGCTGTACGTGTGTTG 61.315 63.158 0.00 0.00 0.00 3.33
4404 12462 2.029964 CCGGGCTGTACGTGTGTT 59.970 61.111 0.00 0.00 0.00 3.32
4405 12463 3.228759 ACCGGGCTGTACGTGTGT 61.229 61.111 6.32 0.00 0.00 3.72
4406 12464 2.736995 CACCGGGCTGTACGTGTG 60.737 66.667 6.32 0.00 0.00 3.82
4407 12465 2.913578 TCACCGGGCTGTACGTGT 60.914 61.111 6.32 0.00 0.00 4.49
4408 12466 2.431942 GTCACCGGGCTGTACGTG 60.432 66.667 6.32 0.00 0.00 4.49
4409 12467 4.047059 CGTCACCGGGCTGTACGT 62.047 66.667 6.32 0.00 0.00 3.57
4410 12468 3.958822 GACGTCACCGGGCTGTACG 62.959 68.421 11.55 10.46 38.78 3.67
4411 12469 2.126189 GACGTCACCGGGCTGTAC 60.126 66.667 11.55 0.00 38.78 2.90
4412 12470 2.282674 AGACGTCACCGGGCTGTA 60.283 61.111 19.50 0.00 38.78 2.74
4413 12471 3.681835 GAGACGTCACCGGGCTGT 61.682 66.667 19.50 0.00 38.78 4.40
4414 12472 4.436998 GGAGACGTCACCGGGCTG 62.437 72.222 19.50 0.00 38.78 4.85
4417 12475 4.065281 GTGGGAGACGTCACCGGG 62.065 72.222 23.22 0.00 38.78 5.73
4418 12476 4.415332 CGTGGGAGACGTCACCGG 62.415 72.222 23.22 12.66 43.50 5.28
4426 12484 1.153349 GGATCAAGGCGTGGGAGAC 60.153 63.158 0.00 0.00 0.00 3.36
4427 12485 1.612146 TGGATCAAGGCGTGGGAGA 60.612 57.895 0.00 0.00 0.00 3.71
4428 12486 1.153289 CTGGATCAAGGCGTGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
4429 12487 2.989639 CTGGATCAAGGCGTGGGA 59.010 61.111 0.00 0.00 0.00 4.37
4430 12488 2.825836 GCTGGATCAAGGCGTGGG 60.826 66.667 0.00 0.00 0.00 4.61
4431 12489 1.651240 CTTGCTGGATCAAGGCGTGG 61.651 60.000 0.00 0.00 39.68 4.94
4432 12490 1.798735 CTTGCTGGATCAAGGCGTG 59.201 57.895 0.00 0.00 39.68 5.34
4433 12491 4.308526 CTTGCTGGATCAAGGCGT 57.691 55.556 0.00 0.00 39.68 5.68
4437 12495 2.158928 CCTCTCTCCTTGCTGGATCAAG 60.159 54.545 0.00 0.00 45.16 3.02
4438 12496 1.836166 CCTCTCTCCTTGCTGGATCAA 59.164 52.381 0.00 0.00 45.16 2.57
4439 12497 1.493861 CCTCTCTCCTTGCTGGATCA 58.506 55.000 0.00 0.00 45.16 2.92
4440 12498 0.758123 CCCTCTCTCCTTGCTGGATC 59.242 60.000 0.00 0.00 45.16 3.36
4441 12499 0.341258 TCCCTCTCTCCTTGCTGGAT 59.659 55.000 0.00 0.00 45.16 3.41
4442 12500 0.325110 CTCCCTCTCTCCTTGCTGGA 60.325 60.000 0.00 0.00 43.86 3.86
4443 12501 0.325110 TCTCCCTCTCTCCTTGCTGG 60.325 60.000 0.00 0.00 37.10 4.85
4444 12502 1.113788 CTCTCCCTCTCTCCTTGCTG 58.886 60.000 0.00 0.00 0.00 4.41
4445 12503 0.032217 CCTCTCCCTCTCTCCTTGCT 60.032 60.000 0.00 0.00 0.00 3.91
4446 12504 0.325203 ACCTCTCCCTCTCTCCTTGC 60.325 60.000 0.00 0.00 0.00 4.01
4447 12505 1.830477 CAACCTCTCCCTCTCTCCTTG 59.170 57.143 0.00 0.00 0.00 3.61
4448 12506 1.719378 TCAACCTCTCCCTCTCTCCTT 59.281 52.381 0.00 0.00 0.00 3.36
4449 12507 1.287739 CTCAACCTCTCCCTCTCTCCT 59.712 57.143 0.00 0.00 0.00 3.69
4450 12508 1.687996 CCTCAACCTCTCCCTCTCTCC 60.688 61.905 0.00 0.00 0.00 3.71
4451 12509 1.286553 TCCTCAACCTCTCCCTCTCTC 59.713 57.143 0.00 0.00 0.00 3.20
4452 12510 1.388174 TCCTCAACCTCTCCCTCTCT 58.612 55.000 0.00 0.00 0.00 3.10
4453 12511 2.107366 CTTCCTCAACCTCTCCCTCTC 58.893 57.143 0.00 0.00 0.00 3.20
4454 12512 1.719378 TCTTCCTCAACCTCTCCCTCT 59.281 52.381 0.00 0.00 0.00 3.69
4455 12513 1.828595 GTCTTCCTCAACCTCTCCCTC 59.171 57.143 0.00 0.00 0.00 4.30
4456 12514 1.435168 AGTCTTCCTCAACCTCTCCCT 59.565 52.381 0.00 0.00 0.00 4.20
4457 12515 1.828595 GAGTCTTCCTCAACCTCTCCC 59.171 57.143 0.00 0.00 40.17 4.30
4458 12516 1.828595 GGAGTCTTCCTCAACCTCTCC 59.171 57.143 0.00 0.00 42.40 3.71
4459 12517 2.530701 TGGAGTCTTCCTCAACCTCTC 58.469 52.381 0.00 0.00 44.36 3.20
4460 12518 2.704190 TGGAGTCTTCCTCAACCTCT 57.296 50.000 0.00 0.00 44.36 3.69
4461 12519 2.169561 GGATGGAGTCTTCCTCAACCTC 59.830 54.545 5.66 0.00 44.36 3.85
4462 12520 2.192263 GGATGGAGTCTTCCTCAACCT 58.808 52.381 5.66 0.00 44.36 3.50
4463 12521 1.909302 TGGATGGAGTCTTCCTCAACC 59.091 52.381 12.12 1.27 44.36 3.77
4464 12522 2.679349 GCTGGATGGAGTCTTCCTCAAC 60.679 54.545 12.12 0.00 44.36 3.18
4465 12523 1.556911 GCTGGATGGAGTCTTCCTCAA 59.443 52.381 12.12 0.00 44.36 3.02
4466 12524 1.198713 GCTGGATGGAGTCTTCCTCA 58.801 55.000 12.12 0.00 44.36 3.86
4467 12525 1.138661 CTGCTGGATGGAGTCTTCCTC 59.861 57.143 12.12 6.46 44.36 3.71
4468 12526 1.202330 CTGCTGGATGGAGTCTTCCT 58.798 55.000 12.12 0.00 44.36 3.36
4469 12527 0.463474 GCTGCTGGATGGAGTCTTCC 60.463 60.000 5.90 5.90 44.31 3.46
4470 12528 0.251354 TGCTGCTGGATGGAGTCTTC 59.749 55.000 0.00 0.00 36.43 2.87
4471 12529 0.252479 CTGCTGCTGGATGGAGTCTT 59.748 55.000 0.00 0.00 36.43 3.01
4472 12530 1.906253 CTGCTGCTGGATGGAGTCT 59.094 57.895 0.00 0.00 36.43 3.24
4473 12531 1.818785 GCTGCTGCTGGATGGAGTC 60.819 63.158 8.53 0.00 36.43 3.36
4474 12532 2.271497 GCTGCTGCTGGATGGAGT 59.729 61.111 8.53 0.00 36.43 3.85
4475 12533 2.113433 GTGCTGCTGCTGGATGGAG 61.113 63.158 17.00 0.00 40.48 3.86
4476 12534 2.045634 GTGCTGCTGCTGGATGGA 60.046 61.111 17.00 0.00 40.48 3.41
4477 12535 1.974875 TTGTGCTGCTGCTGGATGG 60.975 57.895 17.00 0.00 40.48 3.51
4478 12536 1.211969 GTTGTGCTGCTGCTGGATG 59.788 57.895 17.00 0.00 40.48 3.51
4479 12537 3.677527 GTTGTGCTGCTGCTGGAT 58.322 55.556 17.00 0.00 40.48 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.