Multiple sequence alignment - TraesCS4B01G351000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G351000 chr4B 100.000 2546 0 0 1 2546 643493126 643490581 0.000000e+00 4702.0
1 TraesCS4B01G351000 chr4B 81.941 443 37 16 400 822 643625422 643625003 4.060000e-88 335.0
2 TraesCS4B01G351000 chr4B 79.609 358 61 7 872 1225 643576203 643575854 1.960000e-61 246.0
3 TraesCS4B01G351000 chr4B 93.333 45 3 0 600 644 643627792 643627748 1.630000e-07 67.6
4 TraesCS4B01G351000 chr4B 95.000 40 2 0 600 639 643534243 643534204 2.110000e-06 63.9
5 TraesCS4B01G351000 chrUn 90.154 2336 168 27 131 2436 60373562 60375865 0.000000e+00 2983.0
6 TraesCS4B01G351000 chrUn 96.000 775 29 1 1662 2436 60463826 60464598 0.000000e+00 1258.0
7 TraesCS4B01G351000 chrUn 85.775 942 105 16 734 1668 60456723 60457642 0.000000e+00 970.0
8 TraesCS4B01G351000 chrUn 90.055 181 15 1 1048 1225 332275176 332274996 5.480000e-57 231.0
9 TraesCS4B01G351000 chrUn 90.055 181 15 1 1048 1225 381972050 381971870 5.480000e-57 231.0
10 TraesCS4B01G351000 chrUn 98.182 110 2 0 2437 2546 159076159 159076050 2.580000e-45 193.0
11 TraesCS4B01G351000 chrUn 100.000 29 0 0 856 884 307773011 307772983 1.000000e-03 54.7
12 TraesCS4B01G351000 chr4D 81.655 1559 172 51 184 1684 500286862 500285360 0.000000e+00 1190.0
13 TraesCS4B01G351000 chr4D 81.806 753 93 30 1686 2432 500285298 500284584 2.180000e-165 592.0
14 TraesCS4B01G351000 chr4D 81.543 726 79 23 519 1205 500292818 500292109 4.790000e-152 547.0
15 TraesCS4B01G351000 chr4D 82.398 517 54 20 673 1170 500271580 500271082 1.410000e-112 416.0
16 TraesCS4B01G351000 chr4D 83.815 173 14 6 337 506 500297146 500296985 4.390000e-33 152.0
17 TraesCS4B01G351000 chr5A 89.683 756 64 11 1684 2434 680975746 680975000 0.000000e+00 952.0
18 TraesCS4B01G351000 chr5A 84.953 638 59 15 1048 1685 680976401 680975801 1.670000e-171 612.0
19 TraesCS4B01G351000 chr5A 81.338 284 23 12 626 883 680976796 680976517 1.190000e-48 204.0
20 TraesCS4B01G351000 chr5A 88.961 154 12 4 337 487 680976980 680976829 4.330000e-43 185.0
21 TraesCS4B01G351000 chr5A 76.370 292 50 10 1393 1684 680885981 680885709 3.420000e-29 139.0
22 TraesCS4B01G351000 chr5A 95.522 67 3 0 863 929 680887716 680887650 9.630000e-20 108.0
23 TraesCS4B01G351000 chr6B 99.091 110 1 0 2437 2546 41401969 41401860 5.560000e-47 198.0
24 TraesCS4B01G351000 chr7B 98.182 110 2 0 2437 2546 718077357 718077248 2.580000e-45 193.0
25 TraesCS4B01G351000 chr7B 96.491 114 4 0 2433 2546 617834302 617834189 3.340000e-44 189.0
26 TraesCS4B01G351000 chr7B 95.690 116 5 0 2431 2546 740538168 740538283 1.200000e-43 187.0
27 TraesCS4B01G351000 chr2B 98.182 110 2 0 2437 2546 47313069 47312960 2.580000e-45 193.0
28 TraesCS4B01G351000 chr1A 98.182 110 2 0 2437 2546 537084951 537084842 2.580000e-45 193.0
29 TraesCS4B01G351000 chr6A 98.165 109 2 0 2438 2546 4627844 4627952 9.300000e-45 191.0
30 TraesCS4B01G351000 chr6A 98.165 109 2 0 2438 2546 4859330 4859222 9.300000e-45 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G351000 chr4B 643490581 643493126 2545 True 4702.00 4702 100.00000 1 2546 1 chr4B.!!$R1 2545
1 TraesCS4B01G351000 chr4B 643625003 643627792 2789 True 201.30 335 87.63700 400 822 2 chr4B.!!$R4 422
2 TraesCS4B01G351000 chrUn 60373562 60375865 2303 False 2983.00 2983 90.15400 131 2436 1 chrUn.!!$F1 2305
3 TraesCS4B01G351000 chrUn 60463826 60464598 772 False 1258.00 1258 96.00000 1662 2436 1 chrUn.!!$F3 774
4 TraesCS4B01G351000 chrUn 60456723 60457642 919 False 970.00 970 85.77500 734 1668 1 chrUn.!!$F2 934
5 TraesCS4B01G351000 chr4D 500284584 500286862 2278 True 891.00 1190 81.73050 184 2432 2 chr4D.!!$R4 2248
6 TraesCS4B01G351000 chr4D 500292109 500292818 709 True 547.00 547 81.54300 519 1205 1 chr4D.!!$R2 686
7 TraesCS4B01G351000 chr5A 680975000 680976980 1980 True 488.25 952 86.23375 337 2434 4 chr5A.!!$R2 2097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 2955 0.320683 TTGGAGGCAGTCATCACACG 60.321 55.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2461 4622 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.0 22.98 22.98 45.83 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.779733 GGAGGAGGCAGTCGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
38 39 3.151022 GAGGAGGCAGTCGGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
39 40 4.787280 AGGAGGCAGTCGGGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
72 73 3.374402 CGGGATCGCTAGCGGGAT 61.374 66.667 34.76 22.91 44.50 3.85
86 87 2.279120 GGATCGCCAGAGCACGAG 60.279 66.667 0.00 0.00 42.31 4.18
87 88 2.959071 GATCGCCAGAGCACGAGC 60.959 66.667 0.00 0.00 42.31 5.03
88 89 4.521062 ATCGCCAGAGCACGAGCC 62.521 66.667 0.00 0.00 42.31 4.70
91 92 4.479993 GCCAGAGCACGAGCCCAT 62.480 66.667 0.00 0.00 43.56 4.00
92 93 2.202987 CCAGAGCACGAGCCCATC 60.203 66.667 0.00 0.00 43.56 3.51
93 94 2.729479 CCAGAGCACGAGCCCATCT 61.729 63.158 0.00 0.00 43.56 2.90
94 95 1.227205 CAGAGCACGAGCCCATCTC 60.227 63.158 0.00 0.00 43.56 2.75
95 96 2.107953 GAGCACGAGCCCATCTCC 59.892 66.667 0.00 0.00 43.56 3.71
96 97 2.364842 AGCACGAGCCCATCTCCT 60.365 61.111 0.00 0.00 43.56 3.69
101 102 3.934962 GAGCCCATCTCCTCGCCC 61.935 72.222 0.00 0.00 35.77 6.13
103 104 4.247380 GCCCATCTCCTCGCCCAG 62.247 72.222 0.00 0.00 0.00 4.45
104 105 3.554342 CCCATCTCCTCGCCCAGG 61.554 72.222 0.00 0.00 45.15 4.45
113 114 3.234630 CTCGCCCAGGAAACCGTCA 62.235 63.158 0.00 0.00 0.00 4.35
114 115 2.281208 CGCCCAGGAAACCGTCAA 60.281 61.111 0.00 0.00 0.00 3.18
116 117 0.391927 CGCCCAGGAAACCGTCAATA 60.392 55.000 0.00 0.00 0.00 1.90
118 119 2.375146 GCCCAGGAAACCGTCAATATT 58.625 47.619 0.00 0.00 0.00 1.28
119 120 2.099098 GCCCAGGAAACCGTCAATATTG 59.901 50.000 9.29 9.29 0.00 1.90
120 121 2.687935 CCCAGGAAACCGTCAATATTGG 59.312 50.000 15.36 2.23 0.00 3.16
121 122 2.099098 CCAGGAAACCGTCAATATTGGC 59.901 50.000 15.36 12.82 0.00 4.52
122 123 2.099098 CAGGAAACCGTCAATATTGGCC 59.901 50.000 14.27 0.00 0.00 5.36
124 125 2.693074 GGAAACCGTCAATATTGGCCAT 59.307 45.455 14.27 0.00 0.00 4.40
125 126 3.132111 GGAAACCGTCAATATTGGCCATT 59.868 43.478 14.27 5.63 0.00 3.16
127 128 1.408702 ACCGTCAATATTGGCCATTGC 59.591 47.619 14.27 4.21 34.12 3.56
159 160 3.385749 ATCCATGTCACGACGGGCC 62.386 63.158 0.00 0.00 0.00 5.80
174 175 3.151022 GCCCCAGACTCCTCCGAG 61.151 72.222 0.00 0.00 42.32 4.63
212 213 3.305608 GCCATCCTTGAAACTTGTCCTTG 60.306 47.826 0.00 0.00 0.00 3.61
256 257 3.612004 CGTGTGGTCTGAGGAAGTAGTTC 60.612 52.174 1.31 1.31 0.00 3.01
285 286 1.508632 TTACTGCTCGTGTCCTTTGC 58.491 50.000 0.00 0.00 0.00 3.68
428 2400 7.551262 TGATACTCATGTTAATTACCAACGCTT 59.449 33.333 0.00 0.00 0.00 4.68
494 2469 3.441290 CCTCCGCGTCTCCGTTCT 61.441 66.667 4.92 0.00 36.15 3.01
515 2490 3.878086 TGAACTCGTCATTGCAGTTTC 57.122 42.857 0.00 0.00 30.32 2.78
530 2505 3.181511 GCAGTTTCTGTTTTGTTTTGCCC 60.182 43.478 0.00 0.00 33.43 5.36
544 2519 0.747852 TTGCCCGAAAGTCAAAACCC 59.252 50.000 0.00 0.00 0.00 4.11
641 2623 3.007398 AGCAACTCTGAAAACGAGATCCT 59.993 43.478 0.00 0.00 32.87 3.24
656 2639 3.917300 AGATCCTTCCCGATCTACTGTT 58.083 45.455 0.00 0.00 45.73 3.16
657 2640 4.290942 AGATCCTTCCCGATCTACTGTTT 58.709 43.478 0.00 0.00 45.73 2.83
708 2707 6.751514 TTATTGTCTGAAATACATGCGGTT 57.248 33.333 0.00 0.00 0.00 4.44
778 2794 2.510691 AACGGCCGCGTATTCCTG 60.511 61.111 28.58 0.00 0.00 3.86
800 2826 7.036863 TCCTGTCCTTCCCTGTCTTAAATTATT 60.037 37.037 0.00 0.00 0.00 1.40
801 2827 7.615757 CCTGTCCTTCCCTGTCTTAAATTATTT 59.384 37.037 0.00 0.00 0.00 1.40
802 2828 9.681062 CTGTCCTTCCCTGTCTTAAATTATTTA 57.319 33.333 0.00 0.00 0.00 1.40
841 2874 5.351233 TTTCACTCGACAATTAAACGCAT 57.649 34.783 0.00 0.00 0.00 4.73
846 2879 1.578915 CGACAATTAAACGCATGCAGC 59.421 47.619 19.57 0.00 40.87 5.25
914 2955 0.320683 TTGGAGGCAGTCATCACACG 60.321 55.000 0.00 0.00 0.00 4.49
928 2969 1.412710 TCACACGTCAAGCTCCTCTTT 59.587 47.619 0.00 0.00 31.27 2.52
936 2979 4.559704 CGTCAAGCTCCTCTTTACAGAACT 60.560 45.833 0.00 0.00 30.25 3.01
938 2981 6.456501 GTCAAGCTCCTCTTTACAGAACTAA 58.543 40.000 0.00 0.00 31.03 2.24
939 2982 7.100409 GTCAAGCTCCTCTTTACAGAACTAAT 58.900 38.462 0.00 0.00 31.03 1.73
940 2983 7.276878 GTCAAGCTCCTCTTTACAGAACTAATC 59.723 40.741 0.00 0.00 31.03 1.75
942 2985 7.246171 AGCTCCTCTTTACAGAACTAATCAA 57.754 36.000 0.00 0.00 0.00 2.57
944 2987 6.036626 GCTCCTCTTTACAGAACTAATCAAGC 59.963 42.308 0.00 0.00 0.00 4.01
945 2988 7.246171 TCCTCTTTACAGAACTAATCAAGCT 57.754 36.000 0.00 0.00 0.00 3.74
947 2990 6.536941 CCTCTTTACAGAACTAATCAAGCTCC 59.463 42.308 0.00 0.00 0.00 4.70
948 2991 7.246171 TCTTTACAGAACTAATCAAGCTCCT 57.754 36.000 0.00 0.00 0.00 3.69
949 2992 7.324178 TCTTTACAGAACTAATCAAGCTCCTC 58.676 38.462 0.00 0.00 0.00 3.71
950 2993 6.859112 TTACAGAACTAATCAAGCTCCTCT 57.141 37.500 0.00 0.00 0.00 3.69
951 2994 5.753721 ACAGAACTAATCAAGCTCCTCTT 57.246 39.130 0.00 0.00 34.78 2.85
954 2997 4.940654 AGAACTAATCAAGCTCCTCTTTGC 59.059 41.667 0.00 0.00 31.27 3.68
955 2998 4.292186 ACTAATCAAGCTCCTCTTTGCA 57.708 40.909 0.00 0.00 31.27 4.08
956 2999 4.260170 ACTAATCAAGCTCCTCTTTGCAG 58.740 43.478 0.00 0.00 31.27 4.41
961 3004 2.181954 AGCTCCTCTTTGCAGAACTG 57.818 50.000 0.00 0.00 0.00 3.16
963 3006 2.075338 GCTCCTCTTTGCAGAACTGAG 58.925 52.381 5.97 0.00 0.00 3.35
991 3034 2.962421 CCTCTTTGCCTAGCTAGCTAGT 59.038 50.000 37.50 14.62 43.22 2.57
1041 3093 2.643044 GCTGAAGCTACTCGTGTCG 58.357 57.895 0.00 0.00 38.21 4.35
1042 3094 1.406970 GCTGAAGCTACTCGTGTCGC 61.407 60.000 6.05 6.05 38.21 5.19
1043 3095 0.109735 CTGAAGCTACTCGTGTCGCA 60.110 55.000 15.26 0.00 37.35 5.10
1044 3096 0.386858 TGAAGCTACTCGTGTCGCAC 60.387 55.000 15.26 9.65 37.35 5.34
1095 3162 3.176924 TCTCTTAGCAGTTCCAGGAGT 57.823 47.619 0.00 0.00 0.00 3.85
1174 3250 3.313874 CTCCCGCCATTCAGGAGT 58.686 61.111 0.00 0.00 41.96 3.85
1188 3264 2.716017 GGAGTCTCCACCCGCTCTG 61.716 68.421 14.46 0.00 36.28 3.35
1225 3301 7.071447 ACTCAGGACTCAGCTACTTATCTACTA 59.929 40.741 0.00 0.00 0.00 1.82
1237 3313 7.763528 GCTACTTATCTACTATCAGCATGCATT 59.236 37.037 21.98 6.37 34.76 3.56
1250 3326 5.008911 TCAGCATGCATTCATACATTACACC 59.991 40.000 21.98 0.00 34.76 4.16
1251 3327 5.009310 CAGCATGCATTCATACATTACACCT 59.991 40.000 21.98 0.00 0.00 4.00
1252 3328 5.595542 AGCATGCATTCATACATTACACCTT 59.404 36.000 21.98 0.00 0.00 3.50
1254 3330 6.757947 GCATGCATTCATACATTACACCTTTT 59.242 34.615 14.21 0.00 0.00 2.27
1255 3331 7.278424 GCATGCATTCATACATTACACCTTTTT 59.722 33.333 14.21 0.00 0.00 1.94
1277 3353 4.591321 TTTTCTGCTAATGATGTCCCCT 57.409 40.909 0.00 0.00 0.00 4.79
1299 3375 5.050091 CCTGAACTGTGTGATAATAATCCGC 60.050 44.000 0.00 0.00 0.00 5.54
1375 3451 1.303561 GATGGTGCACTTGAGCCCA 60.304 57.895 17.98 4.39 38.56 5.36
1389 3465 3.291611 CCCAATCTGGCAGGCAAC 58.708 61.111 15.73 0.00 35.79 4.17
1391 3467 2.703798 CCAATCTGGCAGGCAACCG 61.704 63.158 15.73 0.00 37.17 4.44
1443 3519 5.473162 TCGACACAAAATTCATGATCCTGTT 59.527 36.000 0.00 0.00 0.00 3.16
1446 3522 5.305128 ACACAAAATTCATGATCCTGTTGGT 59.695 36.000 0.00 0.00 34.23 3.67
1462 3538 4.416516 TGTTGGTGATTACTCCTCTCAGA 58.583 43.478 0.00 0.00 0.00 3.27
1516 3592 3.256960 GGACTCACCAAGGGCCCA 61.257 66.667 27.56 0.00 38.79 5.36
1570 3665 3.385749 TTCGGATGCTTCTCGGCCC 62.386 63.158 0.00 0.00 0.00 5.80
1793 3949 7.039270 GTGGTTTTATGGTGGATATTTTGTCC 58.961 38.462 0.00 0.00 36.26 4.02
1899 4056 7.234355 TGTATATTGGATCTCTGCTCTACTGA 58.766 38.462 0.00 0.00 0.00 3.41
2018 4176 0.769247 AGGGGCGGTATGATTAACCC 59.231 55.000 0.00 0.00 36.93 4.11
2071 4229 4.250464 CGTTGGTATACTTTCTTGGCTCA 58.750 43.478 2.25 0.00 0.00 4.26
2147 4305 7.746475 GTGTAACAGATTTACTCTCAACAATGC 59.254 37.037 0.00 0.00 36.32 3.56
2376 4537 1.151668 GTGCCACCATGATAGCGATC 58.848 55.000 0.00 0.00 0.00 3.69
2422 4583 6.012113 TGGTTCTTGAATTCATGATGGTTCT 58.988 36.000 20.94 0.00 31.40 3.01
2436 4597 3.140325 TGGTTCTGCTCGAAAAGGATT 57.860 42.857 0.00 0.00 32.41 3.01
2437 4598 3.074412 TGGTTCTGCTCGAAAAGGATTC 58.926 45.455 0.00 0.00 32.41 2.52
2438 4599 3.074412 GGTTCTGCTCGAAAAGGATTCA 58.926 45.455 0.00 0.00 32.41 2.57
2439 4600 3.120165 GGTTCTGCTCGAAAAGGATTCAC 60.120 47.826 0.00 0.00 32.41 3.18
2440 4601 3.685139 TCTGCTCGAAAAGGATTCACT 57.315 42.857 0.00 0.00 0.00 3.41
2441 4602 3.329386 TCTGCTCGAAAAGGATTCACTG 58.671 45.455 0.00 0.00 0.00 3.66
2442 4603 3.070018 CTGCTCGAAAAGGATTCACTGT 58.930 45.455 0.00 0.00 0.00 3.55
2443 4604 3.476552 TGCTCGAAAAGGATTCACTGTT 58.523 40.909 0.00 0.00 0.00 3.16
2444 4605 3.882888 TGCTCGAAAAGGATTCACTGTTT 59.117 39.130 0.00 0.00 0.00 2.83
2445 4606 4.024048 TGCTCGAAAAGGATTCACTGTTTC 60.024 41.667 0.00 0.00 0.00 2.78
2446 4607 4.024048 GCTCGAAAAGGATTCACTGTTTCA 60.024 41.667 0.00 0.00 0.00 2.69
2447 4608 5.505654 GCTCGAAAAGGATTCACTGTTTCAA 60.506 40.000 0.00 0.00 0.00 2.69
2448 4609 6.443934 TCGAAAAGGATTCACTGTTTCAAA 57.556 33.333 0.00 0.00 0.00 2.69
2449 4610 7.038154 TCGAAAAGGATTCACTGTTTCAAAT 57.962 32.000 0.00 0.00 0.00 2.32
2450 4611 8.160521 TCGAAAAGGATTCACTGTTTCAAATA 57.839 30.769 0.00 0.00 0.00 1.40
2451 4612 8.289618 TCGAAAAGGATTCACTGTTTCAAATAG 58.710 33.333 0.00 0.00 0.00 1.73
2452 4613 7.061094 CGAAAAGGATTCACTGTTTCAAATAGC 59.939 37.037 0.00 0.00 0.00 2.97
2453 4614 5.904362 AGGATTCACTGTTTCAAATAGCC 57.096 39.130 0.00 0.00 0.00 3.93
2454 4615 4.706962 AGGATTCACTGTTTCAAATAGCCC 59.293 41.667 0.00 0.00 0.00 5.19
2455 4616 4.438744 GGATTCACTGTTTCAAATAGCCCG 60.439 45.833 0.00 0.00 0.00 6.13
2456 4617 1.810151 TCACTGTTTCAAATAGCCCGC 59.190 47.619 0.00 0.00 0.00 6.13
2457 4618 1.812571 CACTGTTTCAAATAGCCCGCT 59.187 47.619 0.00 0.00 0.00 5.52
2458 4619 3.006940 CACTGTTTCAAATAGCCCGCTA 58.993 45.455 0.00 0.00 0.00 4.26
2459 4620 3.627577 CACTGTTTCAAATAGCCCGCTAT 59.372 43.478 3.31 3.31 40.63 2.97
2460 4621 4.814234 CACTGTTTCAAATAGCCCGCTATA 59.186 41.667 9.56 0.00 38.20 1.31
2461 4622 5.050091 CACTGTTTCAAATAGCCCGCTATAG 60.050 44.000 9.56 6.26 38.20 1.31
2462 4623 3.813166 TGTTTCAAATAGCCCGCTATAGC 59.187 43.478 15.09 15.09 38.20 2.97
2463 4624 4.065789 GTTTCAAATAGCCCGCTATAGCT 58.934 43.478 21.98 6.31 43.20 3.32
2464 4625 3.594603 TCAAATAGCCCGCTATAGCTC 57.405 47.619 21.98 11.04 40.56 4.09
2465 4626 2.233922 TCAAATAGCCCGCTATAGCTCC 59.766 50.000 21.98 10.06 40.56 4.70
2466 4627 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
2467 4628 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
2468 4629 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
2469 4630 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
2477 4638 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
2478 4639 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
2479 4640 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
2480 4641 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
2481 4642 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
2499 4660 6.418585 GCTATAGCGTTTACAAAAGGTCTT 57.581 37.500 9.40 0.00 31.10 3.01
2500 4661 6.248631 GCTATAGCGTTTACAAAAGGTCTTG 58.751 40.000 9.40 0.00 31.10 3.02
2501 4662 3.349488 AGCGTTTACAAAAGGTCTTGC 57.651 42.857 0.00 0.00 0.00 4.01
2502 4663 2.041244 GCGTTTACAAAAGGTCTTGCG 58.959 47.619 0.00 0.00 0.00 4.85
2503 4664 2.041244 CGTTTACAAAAGGTCTTGCGC 58.959 47.619 0.00 0.00 0.00 6.09
2504 4665 2.539953 CGTTTACAAAAGGTCTTGCGCA 60.540 45.455 5.66 5.66 0.00 6.09
2505 4666 3.440228 GTTTACAAAAGGTCTTGCGCAA 58.560 40.909 23.48 23.48 0.00 4.85
2506 4667 3.784701 TTACAAAAGGTCTTGCGCAAA 57.215 38.095 25.01 12.30 0.00 3.68
2507 4668 2.663826 ACAAAAGGTCTTGCGCAAAA 57.336 40.000 25.01 8.57 0.00 2.44
2508 4669 2.966050 ACAAAAGGTCTTGCGCAAAAA 58.034 38.095 25.01 12.55 0.00 1.94
2509 4670 2.929398 ACAAAAGGTCTTGCGCAAAAAG 59.071 40.909 25.01 13.04 0.00 2.27
2510 4671 3.186119 CAAAAGGTCTTGCGCAAAAAGA 58.814 40.909 25.01 15.42 0.00 2.52
2515 4676 3.823716 GTCTTGCGCAAAAAGACTTTG 57.176 42.857 26.09 12.43 46.55 2.77
2516 4677 2.535574 GTCTTGCGCAAAAAGACTTTGG 59.464 45.455 26.09 11.78 46.55 3.28
2517 4678 2.165437 TCTTGCGCAAAAAGACTTTGGT 59.835 40.909 25.01 0.00 0.00 3.67
2518 4679 2.202295 TGCGCAAAAAGACTTTGGTC 57.798 45.000 8.16 0.00 42.41 4.02
2519 4680 1.202359 TGCGCAAAAAGACTTTGGTCC 60.202 47.619 8.16 0.00 43.05 4.46
2520 4681 1.202359 GCGCAAAAAGACTTTGGTCCA 60.202 47.619 0.30 0.00 43.05 4.02
2521 4682 2.737039 GCGCAAAAAGACTTTGGTCCAA 60.737 45.455 0.30 0.00 43.05 3.53
2522 4683 3.516615 CGCAAAAAGACTTTGGTCCAAA 58.483 40.909 16.26 16.26 43.05 3.28
2523 4684 3.305897 CGCAAAAAGACTTTGGTCCAAAC 59.694 43.478 13.26 4.96 43.05 2.93
2524 4685 4.249661 GCAAAAAGACTTTGGTCCAAACA 58.750 39.130 13.26 0.00 43.05 2.83
2525 4686 4.693095 GCAAAAAGACTTTGGTCCAAACAA 59.307 37.500 13.26 0.00 43.05 2.83
2526 4687 5.180304 GCAAAAAGACTTTGGTCCAAACAAA 59.820 36.000 13.26 0.00 43.05 2.83
2527 4688 6.128035 GCAAAAAGACTTTGGTCCAAACAAAT 60.128 34.615 13.26 0.00 43.05 2.32
2528 4689 6.983474 AAAAGACTTTGGTCCAAACAAATG 57.017 33.333 13.26 6.01 43.05 2.32
2529 4690 5.930837 AAGACTTTGGTCCAAACAAATGA 57.069 34.783 13.26 0.00 43.05 2.57
2530 4691 5.930837 AGACTTTGGTCCAAACAAATGAA 57.069 34.783 13.26 0.00 43.05 2.57
2531 4692 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
2532 4693 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
2533 4694 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
2534 4695 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
2535 4696 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
2536 4697 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
2537 4698 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
2538 4699 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
2539 4700 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
2540 4701 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
2541 4702 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.779733 TCCCCGACTGCCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
22 23 4.787280 CCTCCCCGACTGCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
69 70 2.279120 CTCGTGCTCTGGCGATCC 60.279 66.667 0.00 0.00 42.25 3.36
70 71 2.959071 GCTCGTGCTCTGGCGATC 60.959 66.667 1.41 0.00 42.25 3.69
71 72 4.521062 GGCTCGTGCTCTGGCGAT 62.521 66.667 9.61 0.00 42.25 4.58
74 75 4.479993 ATGGGCTCGTGCTCTGGC 62.480 66.667 11.13 0.00 41.13 4.85
75 76 2.202987 GATGGGCTCGTGCTCTGG 60.203 66.667 11.13 0.00 41.13 3.86
76 77 1.227205 GAGATGGGCTCGTGCTCTG 60.227 63.158 11.13 0.00 41.13 3.35
77 78 2.430610 GGAGATGGGCTCGTGCTCT 61.431 63.158 11.13 5.18 44.91 4.09
83 84 4.292178 GGCGAGGAGATGGGCTCG 62.292 72.222 0.00 0.00 44.91 5.03
84 85 3.934962 GGGCGAGGAGATGGGCTC 61.935 72.222 0.00 0.00 43.17 4.70
86 87 4.247380 CTGGGCGAGGAGATGGGC 62.247 72.222 0.00 0.00 0.00 5.36
87 88 3.554342 CCTGGGCGAGGAGATGGG 61.554 72.222 10.44 0.00 46.33 4.00
88 89 2.444706 TCCTGGGCGAGGAGATGG 60.445 66.667 14.88 0.00 46.96 3.51
94 95 3.952628 GACGGTTTCCTGGGCGAGG 62.953 68.421 9.61 9.61 44.45 4.63
95 96 2.434359 GACGGTTTCCTGGGCGAG 60.434 66.667 0.00 0.00 0.00 5.03
96 97 2.119484 ATTGACGGTTTCCTGGGCGA 62.119 55.000 0.00 0.00 0.00 5.54
98 99 2.052782 ATATTGACGGTTTCCTGGGC 57.947 50.000 0.00 0.00 0.00 5.36
99 100 2.687935 CCAATATTGACGGTTTCCTGGG 59.312 50.000 17.23 0.00 0.00 4.45
101 102 2.099098 GGCCAATATTGACGGTTTCCTG 59.901 50.000 17.23 0.00 0.00 3.86
103 104 2.096248 TGGCCAATATTGACGGTTTCC 58.904 47.619 17.23 6.56 0.00 3.13
104 105 4.111916 CAATGGCCAATATTGACGGTTTC 58.888 43.478 10.96 0.00 37.65 2.78
105 106 3.678529 GCAATGGCCAATATTGACGGTTT 60.679 43.478 19.52 0.00 37.65 3.27
106 107 2.159114 GCAATGGCCAATATTGACGGTT 60.159 45.455 19.52 0.00 37.65 4.44
107 108 1.408702 GCAATGGCCAATATTGACGGT 59.591 47.619 19.52 0.00 37.65 4.83
108 109 2.138596 GCAATGGCCAATATTGACGG 57.861 50.000 19.52 1.34 37.65 4.79
120 121 2.738139 GCAAACACGGGCAATGGC 60.738 61.111 0.00 0.00 40.13 4.40
121 122 1.015085 CATGCAAACACGGGCAATGG 61.015 55.000 0.00 0.00 44.20 3.16
122 123 0.038435 TCATGCAAACACGGGCAATG 60.038 50.000 0.00 0.00 44.20 2.82
124 125 0.243365 GATCATGCAAACACGGGCAA 59.757 50.000 0.00 0.00 44.20 4.52
125 126 1.594194 GGATCATGCAAACACGGGCA 61.594 55.000 0.00 0.00 45.23 5.36
127 128 1.105457 ATGGATCATGCAAACACGGG 58.895 50.000 0.00 0.00 0.00 5.28
129 130 2.162008 TGACATGGATCATGCAAACACG 59.838 45.455 7.70 0.00 44.80 4.49
167 168 4.143158 CGACGTGTATATAAGACTCGGAGG 60.143 50.000 10.23 0.00 37.94 4.30
174 175 4.082895 AGGATGGCGACGTGTATATAAGAC 60.083 45.833 0.00 0.00 0.00 3.01
182 183 0.604073 TTCAAGGATGGCGACGTGTA 59.396 50.000 0.00 0.00 0.00 2.90
256 257 8.197988 AGGACACGAGCAGTAAATAAAATTAG 57.802 34.615 0.00 0.00 0.00 1.73
274 275 2.093306 TCCATAGTGCAAAGGACACG 57.907 50.000 0.00 0.00 42.94 4.49
335 341 3.205338 GCATTTCAAGTTTTGGTGCCTT 58.795 40.909 0.00 0.00 32.09 4.35
428 2400 8.928733 GTGGTTAAGTTCATAATTAAGACACGA 58.071 33.333 0.00 0.00 0.00 4.35
494 2469 3.876914 AGAAACTGCAATGACGAGTTCAA 59.123 39.130 0.00 0.00 37.92 2.69
515 2490 3.258228 ACTTTCGGGCAAAACAAAACAG 58.742 40.909 0.00 0.00 0.00 3.16
530 2505 8.440833 GGATATATATTCGGGTTTTGACTTTCG 58.559 37.037 0.00 0.00 0.00 3.46
544 2519 4.994907 TGACCCACCGGATATATATTCG 57.005 45.455 15.39 15.39 34.50 3.34
641 2623 2.635915 ACCACAAACAGTAGATCGGGAA 59.364 45.455 0.00 0.00 0.00 3.97
656 2639 0.539986 GGGGCGAAGAGATACCACAA 59.460 55.000 0.00 0.00 0.00 3.33
657 2640 1.672854 CGGGGCGAAGAGATACCACA 61.673 60.000 0.00 0.00 0.00 4.17
687 2680 4.458989 ACAACCGCATGTATTTCAGACAAT 59.541 37.500 0.00 0.00 0.00 2.71
708 2707 5.591067 ACACCCGTCAAAGAATAAAAAGACA 59.409 36.000 0.00 0.00 0.00 3.41
802 2828 9.667107 TCGAGTGAAAAGGATGACTAAATAAAT 57.333 29.630 0.00 0.00 0.00 1.40
841 2874 0.035317 AAATCTCACCGAGTGCTGCA 59.965 50.000 0.00 0.00 32.98 4.41
846 2879 2.455674 TGTCCAAATCTCACCGAGTG 57.544 50.000 0.00 0.00 34.45 3.51
914 2955 4.888917 AGTTCTGTAAAGAGGAGCTTGAC 58.111 43.478 0.00 0.00 38.31 3.18
928 2969 6.859112 AAGAGGAGCTTGATTAGTTCTGTA 57.141 37.500 0.00 0.00 34.93 2.74
936 2979 4.558226 TCTGCAAAGAGGAGCTTGATTA 57.442 40.909 0.00 0.00 36.80 1.75
938 2981 3.080319 GTTCTGCAAAGAGGAGCTTGAT 58.920 45.455 0.00 0.00 36.80 2.57
939 2982 2.105477 AGTTCTGCAAAGAGGAGCTTGA 59.895 45.455 0.00 0.00 36.80 3.02
940 2983 2.225963 CAGTTCTGCAAAGAGGAGCTTG 59.774 50.000 0.00 0.00 36.80 4.01
942 2985 1.696336 TCAGTTCTGCAAAGAGGAGCT 59.304 47.619 0.00 0.00 35.33 4.09
944 2987 2.075338 GCTCAGTTCTGCAAAGAGGAG 58.925 52.381 0.00 0.00 36.96 3.69
945 2988 1.417517 TGCTCAGTTCTGCAAAGAGGA 59.582 47.619 0.00 0.00 36.15 3.71
947 2990 2.350580 GCTTGCTCAGTTCTGCAAAGAG 60.351 50.000 0.00 0.00 46.55 2.85
948 2991 1.605710 GCTTGCTCAGTTCTGCAAAGA 59.394 47.619 0.00 0.00 46.55 2.52
949 2992 1.607628 AGCTTGCTCAGTTCTGCAAAG 59.392 47.619 0.00 1.09 46.55 2.77
950 2993 1.605710 GAGCTTGCTCAGTTCTGCAAA 59.394 47.619 16.71 0.00 46.55 3.68
951 2994 1.233019 GAGCTTGCTCAGTTCTGCAA 58.767 50.000 16.71 0.00 45.40 4.08
954 2997 1.275856 AGAGGAGCTTGCTCAGTTCTG 59.724 52.381 21.97 0.00 37.29 3.02
955 2998 1.643310 AGAGGAGCTTGCTCAGTTCT 58.357 50.000 21.97 17.31 37.29 3.01
956 2999 2.470983 AAGAGGAGCTTGCTCAGTTC 57.529 50.000 21.97 15.70 37.29 3.01
961 3004 0.322366 AGGCAAAGAGGAGCTTGCTC 60.322 55.000 13.69 13.69 36.80 4.26
963 3006 1.377536 CTAGGCAAAGAGGAGCTTGC 58.622 55.000 0.00 0.00 36.80 4.01
991 3034 1.486310 AGATGCCGCCATTAGTTCTCA 59.514 47.619 0.00 0.00 0.00 3.27
1038 3090 2.665185 AGTTGCTTCCCGTGCGAC 60.665 61.111 0.00 0.00 43.22 5.19
1039 3091 2.664851 CAGTTGCTTCCCGTGCGA 60.665 61.111 0.00 0.00 0.00 5.10
1040 3092 2.972505 ACAGTTGCTTCCCGTGCG 60.973 61.111 0.00 0.00 0.00 5.34
1041 3093 2.639286 CACAGTTGCTTCCCGTGC 59.361 61.111 0.00 0.00 0.00 5.34
1042 3094 1.227823 TCCACAGTTGCTTCCCGTG 60.228 57.895 0.00 0.00 0.00 4.94
1043 3095 1.071471 CTCCACAGTTGCTTCCCGT 59.929 57.895 0.00 0.00 0.00 5.28
1044 3096 2.328099 GCTCCACAGTTGCTTCCCG 61.328 63.158 0.00 0.00 0.00 5.14
1045 3097 0.324943 TAGCTCCACAGTTGCTTCCC 59.675 55.000 0.00 0.00 38.15 3.97
1046 3098 2.093235 AGATAGCTCCACAGTTGCTTCC 60.093 50.000 0.00 0.00 38.15 3.46
1095 3162 0.036388 GAATCTGTTGCGGAGGGTCA 60.036 55.000 0.00 0.00 0.00 4.02
1107 3174 0.833287 CGGTGGGATCAGGAATCTGT 59.167 55.000 0.00 0.00 41.59 3.41
1188 3264 2.670934 CCTGAGTGCACACCTGCC 60.671 66.667 21.04 1.22 43.51 4.85
1225 3301 6.294342 GGTGTAATGTATGAATGCATGCTGAT 60.294 38.462 20.33 1.29 37.90 2.90
1255 3331 4.706476 CAGGGGACATCATTAGCAGAAAAA 59.294 41.667 0.00 0.00 0.00 1.94
1256 3332 4.018506 TCAGGGGACATCATTAGCAGAAAA 60.019 41.667 0.00 0.00 0.00 2.29
1260 3336 3.118112 AGTTCAGGGGACATCATTAGCAG 60.118 47.826 0.00 0.00 0.00 4.24
1271 3347 3.695830 TTATCACACAGTTCAGGGGAC 57.304 47.619 0.00 0.00 0.00 4.46
1277 3353 4.506288 CGCGGATTATTATCACACAGTTCA 59.494 41.667 0.00 0.00 32.09 3.18
1299 3375 0.179215 GATCTGAAACTGCAACGCCG 60.179 55.000 0.00 0.00 0.00 6.46
1351 3427 0.895100 TCAAGTGCACCATCAAGGCC 60.895 55.000 14.63 0.00 43.14 5.19
1375 3451 2.361610 CCGGTTGCCTGCCAGATT 60.362 61.111 0.00 0.00 0.00 2.40
1383 3459 2.282462 CCAAGCTTCCGGTTGCCT 60.282 61.111 15.53 2.80 44.97 4.75
1389 3465 2.335712 GGAACTGCCAAGCTTCCGG 61.336 63.158 0.00 0.00 36.34 5.14
1391 3467 4.500265 TGGAACTGCCAAGCTTCC 57.500 55.556 0.00 0.00 45.87 3.46
1443 3519 4.467795 CCTTTCTGAGAGGAGTAATCACCA 59.532 45.833 8.51 0.00 36.33 4.17
1446 3522 6.097554 GTGATCCTTTCTGAGAGGAGTAATCA 59.902 42.308 20.13 15.75 45.94 2.57
1462 3538 1.168714 GCAAGCCTTCGTGATCCTTT 58.831 50.000 0.00 0.00 0.00 3.11
1503 3579 3.588511 TGCATGGGCCCTTGGTGA 61.589 61.111 32.65 9.82 40.13 4.02
1726 3882 8.907222 TCATATGTTGCAGCTCAGATAATTTA 57.093 30.769 1.17 0.00 0.00 1.40
1727 3883 7.812690 TCATATGTTGCAGCTCAGATAATTT 57.187 32.000 1.17 0.00 0.00 1.82
1728 3884 7.997773 ATCATATGTTGCAGCTCAGATAATT 57.002 32.000 1.17 0.00 0.00 1.40
1734 3890 6.796705 TCATAATCATATGTTGCAGCTCAG 57.203 37.500 1.17 0.00 39.94 3.35
1776 3932 5.456921 ACTCAGGACAAAATATCCACCAT 57.543 39.130 0.00 0.00 38.86 3.55
1899 4056 8.982723 ACTCACTGTAACTTGTCCATAATAGAT 58.017 33.333 0.00 0.00 0.00 1.98
2018 4176 6.159988 AGTTCTTTAATCTTCTCTGTCACCG 58.840 40.000 0.00 0.00 0.00 4.94
2071 4229 9.525826 AAACTCACTTTTTATCCTCAATGAGAT 57.474 29.630 12.53 6.18 36.63 2.75
2147 4305 2.744202 ACTGCAATAAGAGCTTTGGACG 59.256 45.455 0.00 0.00 0.00 4.79
2232 4391 6.279882 CAACACATTGTAAATCACTTGGGTT 58.720 36.000 0.00 0.00 37.79 4.11
2376 4537 9.896645 AACCATATCTTGCTAGTCCATATATTG 57.103 33.333 0.00 0.00 0.00 1.90
2422 4583 3.126001 ACAGTGAATCCTTTTCGAGCA 57.874 42.857 0.00 0.00 0.00 4.26
2436 4597 1.810151 GCGGGCTATTTGAAACAGTGA 59.190 47.619 0.00 0.00 0.00 3.41
2437 4598 1.812571 AGCGGGCTATTTGAAACAGTG 59.187 47.619 0.00 0.00 0.00 3.66
2438 4599 2.200373 AGCGGGCTATTTGAAACAGT 57.800 45.000 0.00 0.00 0.00 3.55
2439 4600 4.083802 GCTATAGCGGGCTATTTGAAACAG 60.084 45.833 17.49 8.76 39.65 3.16
2440 4601 3.813166 GCTATAGCGGGCTATTTGAAACA 59.187 43.478 17.49 0.00 39.65 2.83
2441 4602 4.406001 GCTATAGCGGGCTATTTGAAAC 57.594 45.455 17.49 0.05 39.65 2.78
2461 4622 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
2462 4623 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
2476 4637 6.248631 CAAGACCTTTTGTAAACGCTATAGC 58.751 40.000 15.09 15.09 37.78 2.97
2477 4638 6.248631 GCAAGACCTTTTGTAAACGCTATAG 58.751 40.000 0.00 0.00 0.00 1.31
2478 4639 5.163933 CGCAAGACCTTTTGTAAACGCTATA 60.164 40.000 0.00 0.00 43.02 1.31
2479 4640 4.378046 CGCAAGACCTTTTGTAAACGCTAT 60.378 41.667 0.00 0.00 43.02 2.97
2480 4641 3.059461 CGCAAGACCTTTTGTAAACGCTA 60.059 43.478 0.00 0.00 43.02 4.26
2481 4642 2.286772 CGCAAGACCTTTTGTAAACGCT 60.287 45.455 0.00 0.00 43.02 5.07
2482 4643 2.041244 CGCAAGACCTTTTGTAAACGC 58.959 47.619 0.00 0.00 43.02 4.84
2483 4644 2.041244 GCGCAAGACCTTTTGTAAACG 58.959 47.619 0.30 0.00 43.02 3.60
2484 4645 3.073144 TGCGCAAGACCTTTTGTAAAC 57.927 42.857 8.16 0.00 43.02 2.01
2485 4646 3.784701 TTGCGCAAGACCTTTTGTAAA 57.215 38.095 21.02 0.00 43.02 2.01
2486 4647 3.784701 TTTGCGCAAGACCTTTTGTAA 57.215 38.095 23.68 0.16 43.02 2.41
2487 4648 3.784701 TTTTGCGCAAGACCTTTTGTA 57.215 38.095 23.68 0.76 43.02 2.41
2488 4649 2.663826 TTTTGCGCAAGACCTTTTGT 57.336 40.000 23.68 0.00 43.02 2.83
2489 4650 3.000222 GTCTTTTTGCGCAAGACCTTTTG 60.000 43.478 23.99 10.98 43.01 2.44
2490 4651 3.186909 GTCTTTTTGCGCAAGACCTTTT 58.813 40.909 23.99 0.00 43.01 2.27
2491 4652 2.809446 GTCTTTTTGCGCAAGACCTTT 58.191 42.857 23.99 0.00 43.01 3.11
2492 4653 2.492019 GTCTTTTTGCGCAAGACCTT 57.508 45.000 23.99 0.00 43.01 3.50
2496 4657 2.165437 ACCAAAGTCTTTTTGCGCAAGA 59.835 40.909 23.68 16.92 43.02 3.02
2497 4658 2.535574 GACCAAAGTCTTTTTGCGCAAG 59.464 45.455 23.68 12.34 40.10 4.01
2498 4659 2.535331 GACCAAAGTCTTTTTGCGCAA 58.465 42.857 21.02 21.02 40.10 4.85
2499 4660 1.202359 GGACCAAAGTCTTTTTGCGCA 60.202 47.619 5.66 5.66 43.05 6.09
2500 4661 1.202359 TGGACCAAAGTCTTTTTGCGC 60.202 47.619 0.00 0.00 43.05 6.09
2501 4662 2.861462 TGGACCAAAGTCTTTTTGCG 57.139 45.000 0.00 0.00 43.05 4.85
2502 4663 4.249661 TGTTTGGACCAAAGTCTTTTTGC 58.750 39.130 20.14 5.76 43.05 3.68
2503 4664 6.793492 TTTGTTTGGACCAAAGTCTTTTTG 57.207 33.333 20.14 0.00 43.05 2.44
2504 4665 7.164803 TCATTTGTTTGGACCAAAGTCTTTTT 58.835 30.769 20.14 0.00 43.05 1.94
2505 4666 6.706295 TCATTTGTTTGGACCAAAGTCTTTT 58.294 32.000 20.14 1.05 43.05 2.27
2506 4667 6.293004 TCATTTGTTTGGACCAAAGTCTTT 57.707 33.333 20.14 2.09 43.05 2.52
2507 4668 5.930837 TCATTTGTTTGGACCAAAGTCTT 57.069 34.783 20.14 3.48 43.05 3.01
2508 4669 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
2509 4670 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
2510 4671 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
2511 4672 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
2512 4673 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
2513 4674 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
2514 4675 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
2515 4676 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.