Multiple sequence alignment - TraesCS4B01G350100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G350100 chr4B 100.000 3759 0 0 1 3759 642957625 642961383 0.000000e+00 6942.0
1 TraesCS4B01G350100 chr4B 77.994 668 129 12 1695 2350 642536156 642535495 1.630000e-108 403.0
2 TraesCS4B01G350100 chr4B 84.321 287 42 3 994 1280 642463198 642462915 1.030000e-70 278.0
3 TraesCS4B01G350100 chr4B 83.849 291 33 8 1000 1290 642537207 642536931 8.010000e-67 265.0
4 TraesCS4B01G350100 chr5A 94.850 1534 60 10 1277 2802 680742070 680743592 0.000000e+00 2377.0
5 TraesCS4B01G350100 chr5A 89.158 1319 98 21 1 1282 680740651 680741961 0.000000e+00 1602.0
6 TraesCS4B01G350100 chr5A 94.677 263 9 3 2913 3175 680743651 680743908 1.630000e-108 403.0
7 TraesCS4B01G350100 chr5A 79.305 633 79 28 3110 3697 680751916 680752541 2.720000e-106 396.0
8 TraesCS4B01G350100 chr5A 84.561 285 41 2 999 1283 627014973 627015254 2.860000e-71 279.0
9 TraesCS4B01G350100 chr5A 83.279 305 43 8 995 1299 680512107 680511811 1.330000e-69 274.0
10 TraesCS4B01G350100 chr5A 82.857 210 25 7 2673 2879 680751712 680751913 1.070000e-40 178.0
11 TraesCS4B01G350100 chr5A 84.667 150 13 4 3301 3448 680743908 680744049 1.410000e-29 141.0
12 TraesCS4B01G350100 chr5A 90.625 64 3 3 2830 2890 680743587 680743650 8.650000e-12 82.4
13 TraesCS4B01G350100 chr4D 92.689 807 41 13 1277 2071 499778176 499778976 0.000000e+00 1147.0
14 TraesCS4B01G350100 chr4D 74.721 1701 312 69 994 2630 499547326 499545680 0.000000e+00 651.0
15 TraesCS4B01G350100 chr4D 95.308 341 15 1 944 1283 499777796 499778136 1.190000e-149 540.0
16 TraesCS4B01G350100 chr4D 94.955 337 16 1 2070 2406 499780361 499780696 9.250000e-146 527.0
17 TraesCS4B01G350100 chr4D 89.706 340 19 5 2953 3290 499787911 499788236 1.610000e-113 420.0
18 TraesCS4B01G350100 chr4D 86.436 376 33 14 29 394 499775149 499775516 2.720000e-106 396.0
19 TraesCS4B01G350100 chr4D 77.548 628 90 23 3099 3697 499834582 499835187 7.780000e-87 331.0
20 TraesCS4B01G350100 chr4D 82.085 307 49 5 995 1299 499511679 499511377 1.340000e-64 257.0
21 TraesCS4B01G350100 chr4D 83.333 258 31 9 994 1249 499504580 499504333 1.050000e-55 228.0
22 TraesCS4B01G350100 chr4D 84.916 179 25 1 3519 3697 499696663 499696839 2.980000e-41 180.0
23 TraesCS4B01G350100 chr4D 93.103 116 6 2 586 699 499775756 499775871 6.460000e-38 169.0
24 TraesCS4B01G350100 chr4D 80.000 220 27 11 2674 2883 499834374 499834586 3.030000e-31 147.0
25 TraesCS4B01G350100 chr4D 87.500 128 9 2 3555 3677 499788490 499788615 1.410000e-29 141.0
26 TraesCS4B01G350100 chr4D 95.294 85 4 0 497 581 499775514 499775598 6.550000e-28 135.0
27 TraesCS4B01G350100 chr4D 84.559 136 8 6 785 908 499776074 499776208 5.100000e-24 122.0
28 TraesCS4B01G350100 chr4D 92.593 81 6 0 2425 2505 499780916 499780996 2.370000e-22 117.0
29 TraesCS4B01G350100 chr5D 75.304 1069 201 35 1699 2720 500681989 500683041 1.590000e-123 453.0
30 TraesCS4B01G350100 chr5D 75.119 1053 192 45 994 2001 500646684 500647711 2.680000e-116 429.0
31 TraesCS4B01G350100 chr5B 76.886 411 83 7 1952 2350 622063294 622063704 4.890000e-54 222.0
32 TraesCS4B01G350100 chr5B 95.652 69 3 0 3691 3759 447183707 447183775 1.100000e-20 111.0
33 TraesCS4B01G350100 chr5B 94.286 70 3 1 3690 3759 446529096 446529028 5.130000e-19 106.0
34 TraesCS4B01G350100 chr2B 100.000 63 0 0 3697 3759 25286615 25286677 2.370000e-22 117.0
35 TraesCS4B01G350100 chr7B 98.462 65 1 0 3695 3759 634292233 634292169 8.530000e-22 115.0
36 TraesCS4B01G350100 chr7B 95.714 70 2 1 3690 3759 581889433 581889501 1.100000e-20 111.0
37 TraesCS4B01G350100 chr3A 98.462 65 1 0 3695 3759 697062077 697062013 8.530000e-22 115.0
38 TraesCS4B01G350100 chr6B 94.595 74 3 1 3687 3759 673326874 673326801 3.070000e-21 113.0
39 TraesCS4B01G350100 chr6B 93.243 74 5 0 3686 3759 46438900 46438973 3.970000e-20 110.0
40 TraesCS4B01G350100 chr1B 94.286 70 3 1 3690 3759 389321106 389321038 5.130000e-19 106.0
41 TraesCS4B01G350100 chr7A 90.909 44 4 0 721 764 686253487 686253530 4.050000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G350100 chr4B 642957625 642961383 3758 False 6942.000 6942 100.000000 1 3759 1 chr4B.!!$F1 3758
1 TraesCS4B01G350100 chr4B 642535495 642537207 1712 True 334.000 403 80.921500 1000 2350 2 chr4B.!!$R2 1350
2 TraesCS4B01G350100 chr5A 680740651 680744049 3398 False 921.080 2377 90.795400 1 3448 5 chr5A.!!$F2 3447
3 TraesCS4B01G350100 chr5A 680751712 680752541 829 False 287.000 396 81.081000 2673 3697 2 chr5A.!!$F3 1024
4 TraesCS4B01G350100 chr4D 499545680 499547326 1646 True 651.000 651 74.721000 994 2630 1 chr4D.!!$R3 1636
5 TraesCS4B01G350100 chr4D 499775149 499780996 5847 False 394.125 1147 91.867125 29 2505 8 chr4D.!!$F2 2476
6 TraesCS4B01G350100 chr4D 499787911 499788615 704 False 280.500 420 88.603000 2953 3677 2 chr4D.!!$F3 724
7 TraesCS4B01G350100 chr4D 499834374 499835187 813 False 239.000 331 78.774000 2674 3697 2 chr4D.!!$F4 1023
8 TraesCS4B01G350100 chr5D 500681989 500683041 1052 False 453.000 453 75.304000 1699 2720 1 chr5D.!!$F2 1021
9 TraesCS4B01G350100 chr5D 500646684 500647711 1027 False 429.000 429 75.119000 994 2001 1 chr5D.!!$F1 1007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 853 1.110518 TGCGGTTTGGTCCCCTTTTC 61.111 55.0 0.0 0.0 0.00 2.29 F
1173 3034 0.551131 AGGGATGCCTCTCCAACCTT 60.551 55.0 0.0 0.0 37.01 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 4152 0.604780 GTGTCACAGTGGCATGAGCT 60.605 55.0 11.92 0.0 41.7 4.09 R
2893 6923 0.458889 CGCCGTAGTCCCATTCGAAA 60.459 55.0 0.00 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 211 1.153667 CCACTCTCTGAAGCCGAGC 60.154 63.158 0.00 0.00 0.00 5.03
211 231 3.610669 CGCTGCCCTCTCCGCTAT 61.611 66.667 0.00 0.00 0.00 2.97
226 246 1.140816 GCTATGGTTCGCTTCCGATC 58.859 55.000 0.00 0.00 43.97 3.69
230 250 2.585247 GTTCGCTTCCGATCCCCG 60.585 66.667 0.00 0.00 43.97 5.73
231 251 4.524318 TTCGCTTCCGATCCCCGC 62.524 66.667 0.00 0.00 43.97 6.13
235 255 4.241555 CTTCCGATCCCCGCCCTG 62.242 72.222 0.00 0.00 36.84 4.45
261 281 6.317893 ACCATGTTTCTTTCAGTTTACTTCGT 59.682 34.615 0.00 0.00 0.00 3.85
315 335 5.125900 TGGATTTGATAAAGTGTGGCTGATG 59.874 40.000 0.00 0.00 0.00 3.07
344 364 1.273327 ACTGTACGTTTAGGGTTCCGG 59.727 52.381 0.00 0.00 0.00 5.14
394 414 5.897050 TGATTTGTTTTGACCTGGTGTAAC 58.103 37.500 2.82 6.23 0.00 2.50
400 420 2.851263 TGACCTGGTGTAACATGTCC 57.149 50.000 2.82 0.00 39.98 4.02
419 439 7.493320 ACATGTCCAAAATTATGATTGACATGC 59.507 33.333 25.82 4.22 45.95 4.06
443 463 3.439857 TTCTGCTGGGAGCTTATGTTT 57.560 42.857 0.00 0.00 42.97 2.83
445 465 1.133790 CTGCTGGGAGCTTATGTTTGC 59.866 52.381 0.00 0.00 42.97 3.68
450 470 1.134946 GGGAGCTTATGTTTGCGCAAT 59.865 47.619 25.64 12.14 0.00 3.56
453 473 3.489738 GGAGCTTATGTTTGCGCAATCAT 60.490 43.478 35.74 35.74 35.57 2.45
455 475 4.852138 AGCTTATGTTTGCGCAATCATAG 58.148 39.130 34.70 29.96 35.58 2.23
463 485 2.431454 TGCGCAATCATAGTGGTCAAA 58.569 42.857 8.16 0.00 0.00 2.69
471 493 6.646240 GCAATCATAGTGGTCAAACAATTTGT 59.354 34.615 0.00 0.00 41.36 2.83
481 503 8.357402 GTGGTCAAACAATTTGTTAGGAGTATT 58.643 33.333 14.81 0.00 40.14 1.89
574 598 2.141517 CAGTTCTGTGTCTTGCCAGAG 58.858 52.381 0.00 0.00 38.81 3.35
605 782 6.809196 CGAGACTTAGCAACTGAGTTTTATCT 59.191 38.462 0.00 0.00 30.44 1.98
676 853 1.110518 TGCGGTTTGGTCCCCTTTTC 61.111 55.000 0.00 0.00 0.00 2.29
689 866 2.029470 CCCCTTTTCGCTATTTTGCACA 60.029 45.455 0.00 0.00 0.00 4.57
693 872 4.091800 CCTTTTCGCTATTTTGCACATTGG 59.908 41.667 0.00 0.00 0.00 3.16
700 909 2.215907 TTTTGCACATTGGTCAACGG 57.784 45.000 0.00 0.00 0.00 4.44
701 910 1.393603 TTTGCACATTGGTCAACGGA 58.606 45.000 0.00 0.00 0.00 4.69
719 928 8.169268 GTCAACGGAATAGATGAGTTTAACTTG 58.831 37.037 0.00 0.00 0.00 3.16
722 931 8.928270 ACGGAATAGATGAGTTTAACTTGTAG 57.072 34.615 0.00 0.00 0.00 2.74
723 932 7.980099 ACGGAATAGATGAGTTTAACTTGTAGG 59.020 37.037 0.00 0.00 0.00 3.18
724 933 8.195436 CGGAATAGATGAGTTTAACTTGTAGGA 58.805 37.037 0.00 0.00 0.00 2.94
726 935 9.871238 GAATAGATGAGTTTAACTTGTAGGACA 57.129 33.333 0.00 0.00 0.00 4.02
919 1227 1.751544 GCAGCTGCATCCCATCACA 60.752 57.895 33.36 0.00 41.59 3.58
934 1242 2.595124 TCACAGCTTGAACTTCGTCA 57.405 45.000 0.00 0.00 0.00 4.35
963 2823 4.941873 ACTACTTGCAGCTGTATTAAACCC 59.058 41.667 16.64 0.00 0.00 4.11
1154 3015 1.153309 CAGGTGCATCATCCTCGCA 60.153 57.895 0.00 0.00 30.91 5.10
1173 3034 0.551131 AGGGATGCCTCTCCAACCTT 60.551 55.000 0.00 0.00 37.01 3.50
1179 3040 0.678048 GCCTCTCCAACCTTTGCGAT 60.678 55.000 0.00 0.00 0.00 4.58
1253 3114 3.184683 GCTTCTCACGCCTGCTCG 61.185 66.667 0.00 0.00 0.00 5.03
1421 3442 5.278061 AGTGTTCCCTAGTTATGGCTAGAA 58.722 41.667 0.00 0.00 40.54 2.10
1447 3474 2.799917 GCATGTCTACGAGCAAGTAGGG 60.800 54.545 15.54 7.17 43.10 3.53
1549 3585 2.898920 TGCTATTGCTGCCTCAGGCC 62.899 60.000 14.98 0.00 42.03 5.19
1575 3611 2.802816 GTTCTGATGGTATCGGTCATGC 59.197 50.000 0.00 0.00 36.98 4.06
1604 3640 1.512310 GTCGAAGTGAGCGTCTCCG 60.512 63.158 0.00 2.01 37.07 4.63
1716 4083 8.655651 TTTTTCAGGTTTTATCCATGTTGAAC 57.344 30.769 0.00 0.00 0.00 3.18
1728 4095 1.878953 TGTTGAACGCCTCTCTTTCC 58.121 50.000 0.00 0.00 0.00 3.13
1785 4152 5.912149 AGGGAACTGATAATCATAAGGCA 57.088 39.130 0.00 0.00 41.13 4.75
1836 4215 5.176958 CCGTCAGAATATTATTCCGTTGGAC 59.823 44.000 11.89 10.73 0.00 4.02
1915 4300 4.458989 GTGAAAAGAAGGTCATGTATGCCA 59.541 41.667 0.00 0.00 0.00 4.92
2031 4416 1.405526 GGCAGGTGCTTCGACAATCTA 60.406 52.381 1.26 0.00 41.70 1.98
2071 5842 0.999406 CGACGATGTTGGGCACTTAG 59.001 55.000 0.00 0.00 0.00 2.18
2100 5871 6.825721 GTGTTCTCTCCAATATGATGTTCCTT 59.174 38.462 0.00 0.00 0.00 3.36
2260 6046 4.614946 CGATGATCTACTTGTGCATCAGA 58.385 43.478 0.00 0.00 36.13 3.27
2365 6157 3.437049 GGAGGTATGCTTGTGAACTGAAC 59.563 47.826 0.00 0.00 0.00 3.18
2401 6202 6.395426 AATTCAGTTCTGCTGTGATTTTCA 57.605 33.333 0.00 0.00 45.23 2.69
2607 6627 3.525199 AGCAGGATGAAGGATAAGGTGTT 59.475 43.478 0.00 0.00 39.69 3.32
2617 6637 1.940613 GATAAGGTGTTGATGCCGACC 59.059 52.381 0.00 0.00 0.00 4.79
2675 6695 0.956633 TAGAGACTCGTGCACCGTTT 59.043 50.000 12.15 3.90 37.94 3.60
2817 6843 2.500509 TGGTCGTGCAACCATTTTTC 57.499 45.000 6.14 0.00 44.40 2.29
2819 6845 2.223688 TGGTCGTGCAACCATTTTTCTG 60.224 45.455 6.14 0.00 44.40 3.02
2820 6846 2.223711 GGTCGTGCAACCATTTTTCTGT 60.224 45.455 2.53 0.00 39.27 3.41
2821 6847 3.443976 GTCGTGCAACCATTTTTCTGTT 58.556 40.909 0.00 0.00 0.00 3.16
2822 6848 3.242712 GTCGTGCAACCATTTTTCTGTTG 59.757 43.478 0.00 0.00 41.69 3.33
2823 6849 3.119316 TCGTGCAACCATTTTTCTGTTGT 60.119 39.130 0.00 0.00 41.04 3.32
2824 6850 3.616379 CGTGCAACCATTTTTCTGTTGTT 59.384 39.130 0.00 0.00 41.04 2.83
2825 6851 4.259770 CGTGCAACCATTTTTCTGTTGTTC 60.260 41.667 0.00 0.00 41.04 3.18
2826 6852 4.629200 GTGCAACCATTTTTCTGTTGTTCA 59.371 37.500 0.00 0.00 41.04 3.18
2827 6853 5.121454 GTGCAACCATTTTTCTGTTGTTCAA 59.879 36.000 0.00 0.00 41.04 2.69
2832 6858 9.311916 CAACCATTTTTCTGTTGTTCAATTCTA 57.688 29.630 0.00 0.00 35.72 2.10
2890 6920 4.220602 GGTGGTGCCATGTTCTTCTATTTT 59.779 41.667 0.00 0.00 37.17 1.82
2891 6921 5.402398 GTGGTGCCATGTTCTTCTATTTTC 58.598 41.667 0.00 0.00 0.00 2.29
2892 6922 5.183904 GTGGTGCCATGTTCTTCTATTTTCT 59.816 40.000 0.00 0.00 0.00 2.52
2893 6923 5.774690 TGGTGCCATGTTCTTCTATTTTCTT 59.225 36.000 0.00 0.00 0.00 2.52
2894 6924 6.267471 TGGTGCCATGTTCTTCTATTTTCTTT 59.733 34.615 0.00 0.00 0.00 2.52
2895 6925 7.154656 GGTGCCATGTTCTTCTATTTTCTTTT 58.845 34.615 0.00 0.00 0.00 2.27
2896 6926 7.329471 GGTGCCATGTTCTTCTATTTTCTTTTC 59.671 37.037 0.00 0.00 0.00 2.29
2897 6927 7.061094 GTGCCATGTTCTTCTATTTTCTTTTCG 59.939 37.037 0.00 0.00 0.00 3.46
2898 6928 7.040755 TGCCATGTTCTTCTATTTTCTTTTCGA 60.041 33.333 0.00 0.00 0.00 3.71
2899 6929 7.807907 GCCATGTTCTTCTATTTTCTTTTCGAA 59.192 33.333 0.00 0.00 0.00 3.71
2900 6930 9.846248 CCATGTTCTTCTATTTTCTTTTCGAAT 57.154 29.630 0.00 0.00 0.00 3.34
2902 6932 9.846248 ATGTTCTTCTATTTTCTTTTCGAATGG 57.154 29.630 0.00 0.00 0.00 3.16
2903 6933 8.296713 TGTTCTTCTATTTTCTTTTCGAATGGG 58.703 33.333 0.00 0.00 0.00 4.00
2904 6934 8.512138 GTTCTTCTATTTTCTTTTCGAATGGGA 58.488 33.333 0.00 0.00 0.00 4.37
2905 6935 8.040716 TCTTCTATTTTCTTTTCGAATGGGAC 57.959 34.615 0.00 0.00 0.00 4.46
2906 6936 7.883311 TCTTCTATTTTCTTTTCGAATGGGACT 59.117 33.333 0.00 0.00 0.00 3.85
2907 6937 9.162764 CTTCTATTTTCTTTTCGAATGGGACTA 57.837 33.333 0.00 0.00 0.00 2.59
2908 6938 8.488651 TCTATTTTCTTTTCGAATGGGACTAC 57.511 34.615 0.00 0.00 0.00 2.73
2909 6939 5.600908 TTTTCTTTTCGAATGGGACTACG 57.399 39.130 0.00 0.00 0.00 3.51
2910 6940 3.241067 TCTTTTCGAATGGGACTACGG 57.759 47.619 0.00 0.00 0.00 4.02
2911 6941 1.664151 CTTTTCGAATGGGACTACGGC 59.336 52.381 0.00 0.00 0.00 5.68
2919 6949 2.505167 GGGACTACGGCGGGCTTAT 61.505 63.158 13.24 0.00 0.00 1.73
2939 6969 1.239968 GCCTGCCTGAACACTTCCAG 61.240 60.000 0.00 0.00 0.00 3.86
2940 6970 0.109342 CCTGCCTGAACACTTCCAGT 59.891 55.000 0.00 0.00 0.00 4.00
2941 6971 1.347707 CCTGCCTGAACACTTCCAGTA 59.652 52.381 0.00 0.00 0.00 2.74
2942 6972 2.417719 CTGCCTGAACACTTCCAGTAC 58.582 52.381 0.00 0.00 0.00 2.73
2943 6973 1.270094 TGCCTGAACACTTCCAGTACG 60.270 52.381 0.00 0.00 0.00 3.67
3039 7069 1.202394 CGCATTCTCTCAGAGAGGTGG 60.202 57.143 24.74 15.56 42.54 4.61
3118 7148 3.182967 CGCTCTCCTGTAAATCTGTGAC 58.817 50.000 0.00 0.00 0.00 3.67
3182 7220 3.504863 CAGCATTGCCTGTTGATTGTAC 58.495 45.455 4.70 0.00 38.26 2.90
3290 7329 3.701542 CTCTCATGCTAGGTAAGGTCACA 59.298 47.826 0.00 0.00 0.00 3.58
3291 7330 3.447586 TCTCATGCTAGGTAAGGTCACAC 59.552 47.826 0.00 0.00 0.00 3.82
3293 7332 3.195610 TCATGCTAGGTAAGGTCACACTG 59.804 47.826 0.00 0.00 0.00 3.66
3294 7333 2.884320 TGCTAGGTAAGGTCACACTGA 58.116 47.619 0.00 0.00 0.00 3.41
3297 7336 4.286032 TGCTAGGTAAGGTCACACTGATTT 59.714 41.667 0.00 0.00 0.00 2.17
3298 7337 5.482526 TGCTAGGTAAGGTCACACTGATTTA 59.517 40.000 0.00 0.00 0.00 1.40
3300 7339 6.351117 GCTAGGTAAGGTCACACTGATTTACT 60.351 42.308 0.00 0.00 33.57 2.24
3376 7539 2.804527 CAAGGCGACATGATCATCGATT 59.195 45.455 20.10 11.70 40.86 3.34
3377 7540 2.681706 AGGCGACATGATCATCGATTC 58.318 47.619 20.10 9.84 40.86 2.52
3378 7541 2.036346 AGGCGACATGATCATCGATTCA 59.964 45.455 20.10 0.00 40.86 2.57
3379 7542 2.998670 GGCGACATGATCATCGATTCAT 59.001 45.455 20.10 6.75 40.86 2.57
3380 7543 3.061831 GGCGACATGATCATCGATTCATC 59.938 47.826 20.10 8.07 40.86 2.92
3441 7632 4.312443 TCGTTCGGAAAAGAACTAGCAAT 58.688 39.130 8.02 0.00 46.00 3.56
3488 7688 6.051717 CACAGGAACAACAGCTAGCTATAAT 58.948 40.000 18.86 2.75 0.00 1.28
3496 7696 7.106239 ACAACAGCTAGCTATAATTGACAAGT 58.894 34.615 25.25 11.84 0.00 3.16
3497 7697 7.065085 ACAACAGCTAGCTATAATTGACAAGTG 59.935 37.037 25.25 11.48 0.00 3.16
3504 7704 6.711277 AGCTATAATTGACAAGTGAACCTGA 58.289 36.000 0.00 0.00 0.00 3.86
3511 7711 3.584406 TGACAAGTGAACCTGATGATCCT 59.416 43.478 0.00 0.00 0.00 3.24
3521 7726 2.894126 CCTGATGATCCTTAGCTACCGT 59.106 50.000 0.00 0.00 0.00 4.83
3524 7729 2.154567 TGATCCTTAGCTACCGTGGT 57.845 50.000 0.00 0.00 0.00 4.16
3536 7741 3.814577 CCGTGGTGGTAGAACTCAG 57.185 57.895 0.00 0.00 0.00 3.35
3537 7742 0.389948 CCGTGGTGGTAGAACTCAGC 60.390 60.000 0.00 0.00 0.00 4.26
3576 7781 1.479323 GTGAATGCCACAATCAGCCAT 59.521 47.619 0.00 0.00 45.03 4.40
3583 7788 0.813184 CACAATCAGCCATGGTCCAC 59.187 55.000 14.67 0.00 0.00 4.02
3584 7789 0.405198 ACAATCAGCCATGGTCCACA 59.595 50.000 14.67 0.00 0.00 4.17
3610 7815 2.270297 CTGCAGGCATTTACCACCGC 62.270 60.000 5.57 0.00 0.00 5.68
3638 7848 2.288273 ACACACAAGACTCCGTTAGCTC 60.288 50.000 0.00 0.00 0.00 4.09
3697 7907 3.114616 CGGAGCTTGCCACGTCAG 61.115 66.667 0.00 0.00 0.00 3.51
3698 7908 2.743928 GGAGCTTGCCACGTCAGG 60.744 66.667 0.00 0.00 0.00 3.86
3718 7928 3.846955 CGTGTTCGGTTAATCCCCT 57.153 52.632 0.00 0.00 0.00 4.79
3719 7929 2.103537 CGTGTTCGGTTAATCCCCTT 57.896 50.000 0.00 0.00 0.00 3.95
3720 7930 1.735571 CGTGTTCGGTTAATCCCCTTG 59.264 52.381 0.00 0.00 0.00 3.61
3721 7931 1.471287 GTGTTCGGTTAATCCCCTTGC 59.529 52.381 0.00 0.00 0.00 4.01
3722 7932 1.100510 GTTCGGTTAATCCCCTTGCC 58.899 55.000 0.00 0.00 0.00 4.52
3723 7933 0.699399 TTCGGTTAATCCCCTTGCCA 59.301 50.000 0.00 0.00 0.00 4.92
3724 7934 0.034863 TCGGTTAATCCCCTTGCCAC 60.035 55.000 0.00 0.00 0.00 5.01
3725 7935 0.322997 CGGTTAATCCCCTTGCCACA 60.323 55.000 0.00 0.00 0.00 4.17
3726 7936 1.474330 GGTTAATCCCCTTGCCACAG 58.526 55.000 0.00 0.00 0.00 3.66
3727 7937 1.474330 GTTAATCCCCTTGCCACAGG 58.526 55.000 0.00 0.00 0.00 4.00
3734 7944 3.362040 CCTTGCCACAGGGATTGAA 57.638 52.632 0.00 0.00 31.89 2.69
3735 7945 1.180029 CCTTGCCACAGGGATTGAAG 58.820 55.000 0.00 0.00 31.89 3.02
3736 7946 1.180029 CTTGCCACAGGGATTGAAGG 58.820 55.000 0.00 0.00 35.59 3.46
3737 7947 0.251742 TTGCCACAGGGATTGAAGGG 60.252 55.000 0.00 0.00 35.59 3.95
3738 7948 1.380380 GCCACAGGGATTGAAGGGG 60.380 63.158 0.00 0.00 35.59 4.79
3739 7949 1.863155 GCCACAGGGATTGAAGGGGA 61.863 60.000 0.00 0.00 35.59 4.81
3740 7950 0.929244 CCACAGGGATTGAAGGGGAT 59.071 55.000 0.00 0.00 35.59 3.85
3741 7951 1.288932 CCACAGGGATTGAAGGGGATT 59.711 52.381 0.00 0.00 35.59 3.01
3742 7952 2.381911 CACAGGGATTGAAGGGGATTG 58.618 52.381 0.00 0.00 0.00 2.67
3743 7953 1.288932 ACAGGGATTGAAGGGGATTGG 59.711 52.381 0.00 0.00 0.00 3.16
3744 7954 0.936691 AGGGATTGAAGGGGATTGGG 59.063 55.000 0.00 0.00 0.00 4.12
3745 7955 0.105504 GGGATTGAAGGGGATTGGGG 60.106 60.000 0.00 0.00 0.00 4.96
3746 7956 0.933700 GGATTGAAGGGGATTGGGGA 59.066 55.000 0.00 0.00 0.00 4.81
3747 7957 1.133356 GGATTGAAGGGGATTGGGGAG 60.133 57.143 0.00 0.00 0.00 4.30
3748 7958 0.936691 ATTGAAGGGGATTGGGGAGG 59.063 55.000 0.00 0.00 0.00 4.30
3749 7959 0.479589 TTGAAGGGGATTGGGGAGGT 60.480 55.000 0.00 0.00 0.00 3.85
3750 7960 0.479589 TGAAGGGGATTGGGGAGGTT 60.480 55.000 0.00 0.00 0.00 3.50
3751 7961 0.710588 GAAGGGGATTGGGGAGGTTT 59.289 55.000 0.00 0.00 0.00 3.27
3752 7962 0.413434 AAGGGGATTGGGGAGGTTTG 59.587 55.000 0.00 0.00 0.00 2.93
3753 7963 0.479589 AGGGGATTGGGGAGGTTTGA 60.480 55.000 0.00 0.00 0.00 2.69
3754 7964 0.033109 GGGGATTGGGGAGGTTTGAG 60.033 60.000 0.00 0.00 0.00 3.02
3755 7965 0.999712 GGGATTGGGGAGGTTTGAGA 59.000 55.000 0.00 0.00 0.00 3.27
3756 7966 1.357761 GGGATTGGGGAGGTTTGAGAA 59.642 52.381 0.00 0.00 0.00 2.87
3757 7967 2.621668 GGGATTGGGGAGGTTTGAGAAG 60.622 54.545 0.00 0.00 0.00 2.85
3758 7968 2.621668 GGATTGGGGAGGTTTGAGAAGG 60.622 54.545 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 231 2.582436 GGGATCGGAAGCGAACCA 59.418 61.111 0.00 0.00 33.28 3.67
226 246 3.583882 AAACATGGTCAGGGCGGGG 62.584 63.158 0.00 0.00 0.00 5.73
230 250 2.229784 CTGAAAGAAACATGGTCAGGGC 59.770 50.000 0.00 0.00 34.07 5.19
231 251 3.490348 ACTGAAAGAAACATGGTCAGGG 58.510 45.455 0.00 0.00 40.02 4.45
233 253 7.264373 AGTAAACTGAAAGAAACATGGTCAG 57.736 36.000 0.00 0.00 41.21 3.51
234 254 7.466725 CGAAGTAAACTGAAAGAAACATGGTCA 60.467 37.037 0.00 0.00 37.43 4.02
235 255 6.851330 CGAAGTAAACTGAAAGAAACATGGTC 59.149 38.462 0.00 0.00 37.43 4.02
261 281 1.688735 CCGCTCAATAGATCAGGTCCA 59.311 52.381 0.00 0.00 0.00 4.02
315 335 4.142643 CCCTAAACGTACAGTCTGAGAGAC 60.143 50.000 6.91 0.00 45.38 3.36
344 364 2.740447 GACCAATCCGTACAACCTCAAC 59.260 50.000 0.00 0.00 0.00 3.18
394 414 7.042321 GGCATGTCAATCATAATTTTGGACATG 60.042 37.037 25.04 25.04 40.10 3.21
400 420 7.713507 AGAATGGGCATGTCAATCATAATTTTG 59.286 33.333 0.00 0.00 34.67 2.44
432 452 3.135414 TGATTGCGCAAACATAAGCTC 57.865 42.857 28.81 17.39 0.00 4.09
433 453 3.788333 ATGATTGCGCAAACATAAGCT 57.212 38.095 35.48 18.53 32.99 3.74
443 463 2.106477 TTGACCACTATGATTGCGCA 57.894 45.000 5.66 5.66 0.00 6.09
445 465 4.418013 TTGTTTGACCACTATGATTGCG 57.582 40.909 0.00 0.00 0.00 4.85
450 470 7.721842 TCCTAACAAATTGTTTGACCACTATGA 59.278 33.333 16.99 2.72 43.26 2.15
453 473 7.057894 ACTCCTAACAAATTGTTTGACCACTA 58.942 34.615 16.99 0.00 43.26 2.74
455 475 6.144078 ACTCCTAACAAATTGTTTGACCAC 57.856 37.500 16.99 0.00 43.26 4.16
574 598 5.690857 ACTCAGTTGCTAAGTCTCGTTTAAC 59.309 40.000 0.00 0.00 0.00 2.01
605 782 9.134734 GTTTTGAACGCTAATGATTTATTTGGA 57.865 29.630 0.00 0.00 0.00 3.53
623 800 2.463876 GCACCAGCAGAAGTTTTGAAC 58.536 47.619 0.00 0.00 41.58 3.18
676 853 3.214697 TGACCAATGTGCAAAATAGCG 57.785 42.857 0.00 0.00 37.31 4.26
689 866 5.359194 ACTCATCTATTCCGTTGACCAAT 57.641 39.130 0.00 0.00 0.00 3.16
693 872 7.829378 AGTTAAACTCATCTATTCCGTTGAC 57.171 36.000 0.00 0.00 0.00 3.18
700 909 9.871238 TGTCCTACAAGTTAAACTCATCTATTC 57.129 33.333 0.00 0.00 0.00 1.75
719 928 8.922058 TTATTGAAGTTCTACGATTGTCCTAC 57.078 34.615 4.17 0.00 0.00 3.18
749 961 5.978322 CGCTTACTAATACTCCCTCTGTTTC 59.022 44.000 0.00 0.00 0.00 2.78
845 1141 1.873591 CAAGGAGTGGTTGTACTGCAC 59.126 52.381 0.00 0.00 40.96 4.57
911 1219 1.466167 CGAAGTTCAAGCTGTGATGGG 59.534 52.381 3.32 0.00 35.70 4.00
934 1242 6.391227 AATACAGCTGCAAGTAGTGTTTTT 57.609 33.333 15.27 0.00 35.30 1.94
1140 3001 1.413256 ATCCCTGCGAGGATGATGCA 61.413 55.000 6.53 0.00 45.25 3.96
1154 3015 0.551131 AAGGTTGGAGAGGCATCCCT 60.551 55.000 6.34 0.00 46.74 4.20
1179 3040 0.607217 TTCTGAGGTGGTCGACGCTA 60.607 55.000 9.92 0.00 0.00 4.26
1253 3114 2.098117 GCATACTGGAACTCATTGGTGC 59.902 50.000 0.00 0.00 0.00 5.01
1339 3315 1.143620 GCAGAGCCTGGCAGTAGAG 59.856 63.158 22.65 5.38 31.21 2.43
1421 3442 2.385013 TGCTCGTAGACATGCAACAT 57.615 45.000 0.00 0.00 32.12 2.71
1447 3474 2.870411 ACCTACAAACGTCTCTTTGCAC 59.130 45.455 0.00 0.00 34.93 4.57
1549 3585 2.100916 ACCGATACCATCAGAACCGAAG 59.899 50.000 0.00 0.00 0.00 3.79
1575 3611 1.618837 TCACTTCGACCTCCTCAAAGG 59.381 52.381 0.00 0.00 42.55 3.11
1628 3664 0.999406 CCACTCTACAAACGATGCCG 59.001 55.000 0.00 0.00 42.50 5.69
1695 4062 4.083003 GCGTTCAACATGGATAAAACCTGA 60.083 41.667 0.00 0.00 0.00 3.86
1696 4063 4.165779 GCGTTCAACATGGATAAAACCTG 58.834 43.478 0.00 0.00 0.00 4.00
1716 4083 0.891373 TGTCTGAGGAAAGAGAGGCG 59.109 55.000 0.00 0.00 0.00 5.52
1728 4095 2.152016 TCAGTGAGTACGGTGTCTGAG 58.848 52.381 0.00 0.00 0.00 3.35
1785 4152 0.604780 GTGTCACAGTGGCATGAGCT 60.605 55.000 11.92 0.00 41.70 4.09
1836 4215 3.190118 GTGAAGAACCTGCAGAATCTTGG 59.810 47.826 27.88 10.78 32.54 3.61
1864 4246 2.165030 GGTAAAAGACCTCGATCGTCCA 59.835 50.000 15.94 0.00 45.89 4.02
1915 4300 3.317711 TCGACAAACTCATGGTTGCATTT 59.682 39.130 0.00 0.00 38.29 2.32
2031 4416 3.242903 CGAGATCAGTGACGCTTCTGTAT 60.243 47.826 0.00 0.00 33.89 2.29
2071 5842 4.142609 TCATATTGGAGAGAACACCTGC 57.857 45.455 0.00 0.00 0.00 4.85
2079 5850 6.813293 TCAAGGAACATCATATTGGAGAGA 57.187 37.500 0.00 0.00 0.00 3.10
2186 5972 3.634504 TCAGGATGCCAGCAATAATGTT 58.365 40.909 0.00 0.00 34.76 2.71
2260 6046 1.065636 CATCACAGACATGGCAGAGGT 60.066 52.381 0.00 0.00 0.00 3.85
2387 6184 2.161012 ACGCTCATGAAAATCACAGCAG 59.839 45.455 0.00 7.90 36.11 4.24
2401 6202 1.072331 ACAAGGTCCAGAAACGCTCAT 59.928 47.619 0.00 0.00 0.00 2.90
2607 6627 2.499205 GACATCCGGTCGGCATCA 59.501 61.111 0.00 0.00 36.65 3.07
2617 6637 3.309682 ACAGCAATTTATGACGACATCCG 59.690 43.478 3.03 0.00 45.44 4.18
2675 6695 7.782168 AGATTCTCTGGTGATGTTATAGTCAGA 59.218 37.037 0.00 0.00 0.00 3.27
2811 6837 7.653311 GCCACTAGAATTGAACAACAGAAAAAT 59.347 33.333 0.00 0.00 0.00 1.82
2816 6842 4.713553 TGCCACTAGAATTGAACAACAGA 58.286 39.130 0.00 0.00 0.00 3.41
2817 6843 4.516698 ACTGCCACTAGAATTGAACAACAG 59.483 41.667 0.00 0.00 0.00 3.16
2819 6845 5.215160 CAACTGCCACTAGAATTGAACAAC 58.785 41.667 0.00 0.00 0.00 3.32
2820 6846 4.887071 ACAACTGCCACTAGAATTGAACAA 59.113 37.500 0.00 0.00 0.00 2.83
2821 6847 4.460263 ACAACTGCCACTAGAATTGAACA 58.540 39.130 0.00 0.00 0.00 3.18
2822 6848 5.438761 AACAACTGCCACTAGAATTGAAC 57.561 39.130 0.00 0.00 0.00 3.18
2823 6849 6.272318 CAAAACAACTGCCACTAGAATTGAA 58.728 36.000 0.00 0.00 0.00 2.69
2824 6850 5.735922 GCAAAACAACTGCCACTAGAATTGA 60.736 40.000 0.00 0.00 33.51 2.57
2825 6851 4.445385 GCAAAACAACTGCCACTAGAATTG 59.555 41.667 0.00 0.00 33.51 2.32
2826 6852 4.620982 GCAAAACAACTGCCACTAGAATT 58.379 39.130 0.00 0.00 33.51 2.17
2827 6853 4.243007 GCAAAACAACTGCCACTAGAAT 57.757 40.909 0.00 0.00 33.51 2.40
2883 6913 7.277098 CGTAGTCCCATTCGAAAAGAAAATAGA 59.723 37.037 0.00 0.00 42.91 1.98
2890 6920 2.675889 GCCGTAGTCCCATTCGAAAAGA 60.676 50.000 0.00 0.00 0.00 2.52
2891 6921 1.664151 GCCGTAGTCCCATTCGAAAAG 59.336 52.381 0.00 0.00 0.00 2.27
2892 6922 1.729284 GCCGTAGTCCCATTCGAAAA 58.271 50.000 0.00 0.00 0.00 2.29
2893 6923 0.458889 CGCCGTAGTCCCATTCGAAA 60.459 55.000 0.00 0.00 0.00 3.46
2894 6924 1.140161 CGCCGTAGTCCCATTCGAA 59.860 57.895 0.00 0.00 0.00 3.71
2895 6925 2.777972 CCGCCGTAGTCCCATTCGA 61.778 63.158 0.00 0.00 0.00 3.71
2896 6926 2.279252 CCGCCGTAGTCCCATTCG 60.279 66.667 0.00 0.00 0.00 3.34
2897 6927 2.108362 CCCGCCGTAGTCCCATTC 59.892 66.667 0.00 0.00 0.00 2.67
2898 6928 4.171103 GCCCGCCGTAGTCCCATT 62.171 66.667 0.00 0.00 0.00 3.16
2900 6930 3.961225 TAAGCCCGCCGTAGTCCCA 62.961 63.158 0.00 0.00 0.00 4.37
2901 6931 2.505167 ATAAGCCCGCCGTAGTCCC 61.505 63.158 0.00 0.00 0.00 4.46
2902 6932 1.300697 CATAAGCCCGCCGTAGTCC 60.301 63.158 0.00 0.00 0.00 3.85
2903 6933 1.954651 GCATAAGCCCGCCGTAGTC 60.955 63.158 0.00 0.00 33.58 2.59
2904 6934 2.108362 GCATAAGCCCGCCGTAGT 59.892 61.111 0.00 0.00 33.58 2.73
2919 6949 1.228245 GGAAGTGTTCAGGCAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
2939 6969 0.953960 CCCTTGTGGCTTGGACGTAC 60.954 60.000 0.00 0.00 0.00 3.67
2940 6970 1.373435 CCCTTGTGGCTTGGACGTA 59.627 57.895 0.00 0.00 0.00 3.57
2941 6971 2.113139 CCCTTGTGGCTTGGACGT 59.887 61.111 0.00 0.00 0.00 4.34
2942 6972 2.672996 CCCCTTGTGGCTTGGACG 60.673 66.667 0.00 0.00 0.00 4.79
2998 7028 5.477291 TGCGTTCCTTGTAATTTAATTCCCA 59.523 36.000 0.00 0.00 0.00 4.37
3019 7049 1.202394 CCACCTCTCTGAGAGAATGCG 60.202 57.143 31.14 18.28 45.07 4.73
3039 7069 4.034510 CGAGATTGGGCTTCTATGTTGTTC 59.965 45.833 0.00 0.00 0.00 3.18
3078 7108 1.544724 GTAAATGTCAGGGCCTTGCA 58.455 50.000 10.65 11.99 0.00 4.08
3118 7148 9.294030 GATACAGATTTTTAGCATCAACCAAAG 57.706 33.333 0.00 0.00 0.00 2.77
3229 7267 8.458573 TGACATTTAAGACACAATTAACAGGT 57.541 30.769 0.00 0.00 0.00 4.00
3278 7317 7.735326 ATAGTAAATCAGTGTGACCTTACCT 57.265 36.000 0.00 0.00 32.57 3.08
3290 7329 9.905713 AAACACACCATCATATAGTAAATCAGT 57.094 29.630 0.00 0.00 0.00 3.41
3294 7333 9.905713 AGACAAACACACCATCATATAGTAAAT 57.094 29.630 0.00 0.00 0.00 1.40
3297 7336 8.973182 TGTAGACAAACACACCATCATATAGTA 58.027 33.333 0.00 0.00 0.00 1.82
3298 7337 7.847096 TGTAGACAAACACACCATCATATAGT 58.153 34.615 0.00 0.00 0.00 2.12
3300 7339 7.763985 CACTGTAGACAAACACACCATCATATA 59.236 37.037 0.00 0.00 0.00 0.86
3428 7619 9.220767 CCAAGAGTAACTTATTGCTAGTTCTTT 57.779 33.333 0.00 0.00 37.12 2.52
3441 7632 5.430417 TGGGGAATATGCCAAGAGTAACTTA 59.570 40.000 0.98 0.00 37.03 2.24
3472 7672 7.278646 TCACTTGTCAATTATAGCTAGCTGTTG 59.721 37.037 27.68 22.53 0.00 3.33
3488 7688 4.042062 AGGATCATCAGGTTCACTTGTCAA 59.958 41.667 0.00 0.00 0.00 3.18
3496 7696 4.345257 GGTAGCTAAGGATCATCAGGTTCA 59.655 45.833 0.00 0.00 0.00 3.18
3497 7697 4.559704 CGGTAGCTAAGGATCATCAGGTTC 60.560 50.000 0.00 0.00 0.00 3.62
3504 7704 2.365617 CACCACGGTAGCTAAGGATCAT 59.634 50.000 0.00 0.00 0.00 2.45
3521 7726 0.317160 CACGCTGAGTTCTACCACCA 59.683 55.000 0.00 0.00 0.00 4.17
3524 7729 1.204704 CATCCACGCTGAGTTCTACCA 59.795 52.381 0.00 0.00 0.00 3.25
3529 7734 1.021390 CCACCATCCACGCTGAGTTC 61.021 60.000 0.00 0.00 0.00 3.01
3536 7741 2.045926 AGAAGCCACCATCCACGC 60.046 61.111 0.00 0.00 0.00 5.34
3537 7742 0.742281 CAGAGAAGCCACCATCCACG 60.742 60.000 0.00 0.00 0.00 4.94
3583 7788 1.033746 AAATGCCTGCAGGATCCGTG 61.034 55.000 37.21 8.33 37.39 4.94
3584 7789 0.546122 TAAATGCCTGCAGGATCCGT 59.454 50.000 37.21 17.15 37.39 4.69
3610 7815 1.217882 GAGTCTTGTGTGTTGGTCCG 58.782 55.000 0.00 0.00 0.00 4.79
3700 7910 1.735571 CAAGGGGATTAACCGAACACG 59.264 52.381 0.00 0.00 40.11 4.49
3701 7911 1.471287 GCAAGGGGATTAACCGAACAC 59.529 52.381 0.00 0.00 40.11 3.32
3702 7912 1.614850 GGCAAGGGGATTAACCGAACA 60.615 52.381 0.00 0.00 40.11 3.18
3703 7913 1.100510 GGCAAGGGGATTAACCGAAC 58.899 55.000 0.00 0.00 40.11 3.95
3704 7914 0.699399 TGGCAAGGGGATTAACCGAA 59.301 50.000 0.00 0.00 40.11 4.30
3705 7915 0.034863 GTGGCAAGGGGATTAACCGA 60.035 55.000 0.00 0.00 40.11 4.69
3706 7916 0.322997 TGTGGCAAGGGGATTAACCG 60.323 55.000 0.00 0.00 40.11 4.44
3707 7917 1.474330 CTGTGGCAAGGGGATTAACC 58.526 55.000 0.00 0.00 38.08 2.85
3708 7918 1.474330 CCTGTGGCAAGGGGATTAAC 58.526 55.000 7.57 0.00 33.28 2.01
3709 7919 3.998560 CCTGTGGCAAGGGGATTAA 57.001 52.632 7.57 0.00 33.28 1.40
3716 7926 1.180029 CTTCAATCCCTGTGGCAAGG 58.820 55.000 8.28 8.28 37.05 3.61
3717 7927 1.180029 CCTTCAATCCCTGTGGCAAG 58.820 55.000 0.00 0.00 0.00 4.01
3718 7928 0.251742 CCCTTCAATCCCTGTGGCAA 60.252 55.000 0.00 0.00 0.00 4.52
3719 7929 1.383799 CCCTTCAATCCCTGTGGCA 59.616 57.895 0.00 0.00 0.00 4.92
3720 7930 1.380380 CCCCTTCAATCCCTGTGGC 60.380 63.158 0.00 0.00 0.00 5.01
3721 7931 0.929244 ATCCCCTTCAATCCCTGTGG 59.071 55.000 0.00 0.00 0.00 4.17
3722 7932 2.381911 CAATCCCCTTCAATCCCTGTG 58.618 52.381 0.00 0.00 0.00 3.66
3723 7933 1.288932 CCAATCCCCTTCAATCCCTGT 59.711 52.381 0.00 0.00 0.00 4.00
3724 7934 1.412074 CCCAATCCCCTTCAATCCCTG 60.412 57.143 0.00 0.00 0.00 4.45
3725 7935 0.936691 CCCAATCCCCTTCAATCCCT 59.063 55.000 0.00 0.00 0.00 4.20
3726 7936 0.105504 CCCCAATCCCCTTCAATCCC 60.106 60.000 0.00 0.00 0.00 3.85
3727 7937 0.933700 TCCCCAATCCCCTTCAATCC 59.066 55.000 0.00 0.00 0.00 3.01
3728 7938 1.133356 CCTCCCCAATCCCCTTCAATC 60.133 57.143 0.00 0.00 0.00 2.67
3729 7939 0.936691 CCTCCCCAATCCCCTTCAAT 59.063 55.000 0.00 0.00 0.00 2.57
3730 7940 0.479589 ACCTCCCCAATCCCCTTCAA 60.480 55.000 0.00 0.00 0.00 2.69
3731 7941 0.479589 AACCTCCCCAATCCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
3732 7942 0.710588 AAACCTCCCCAATCCCCTTC 59.289 55.000 0.00 0.00 0.00 3.46
3733 7943 0.413434 CAAACCTCCCCAATCCCCTT 59.587 55.000 0.00 0.00 0.00 3.95
3734 7944 0.479589 TCAAACCTCCCCAATCCCCT 60.480 55.000 0.00 0.00 0.00 4.79
3735 7945 0.033109 CTCAAACCTCCCCAATCCCC 60.033 60.000 0.00 0.00 0.00 4.81
3736 7946 0.999712 TCTCAAACCTCCCCAATCCC 59.000 55.000 0.00 0.00 0.00 3.85
3737 7947 2.621668 CCTTCTCAAACCTCCCCAATCC 60.622 54.545 0.00 0.00 0.00 3.01
3738 7948 2.728007 CCTTCTCAAACCTCCCCAATC 58.272 52.381 0.00 0.00 0.00 2.67
3739 7949 2.907458 CCTTCTCAAACCTCCCCAAT 57.093 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.