Multiple sequence alignment - TraesCS4B01G349700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G349700 chr4B 100.000 4272 0 0 1 4272 642736125 642740396 0.000000e+00 7890.0
1 TraesCS4B01G349700 chr7D 96.426 3553 67 12 774 4272 499627551 499624005 0.000000e+00 5803.0
2 TraesCS4B01G349700 chr7D 96.023 352 12 2 211 560 623872338 623871987 4.790000e-159 571.0
3 TraesCS4B01G349700 chr7D 92.899 169 10 2 578 745 553505280 553505113 1.190000e-60 244.0
4 TraesCS4B01G349700 chr7A 96.335 1610 44 9 1031 2629 109230796 109229191 0.000000e+00 2632.0
5 TraesCS4B01G349700 chr7A 95.926 1620 49 13 1031 2639 61493737 61492124 0.000000e+00 2610.0
6 TraesCS4B01G349700 chr7A 96.203 79 3 0 1 79 588285277 588285199 3.470000e-26 130.0
7 TraesCS4B01G349700 chr2B 93.329 1484 41 12 774 2248 30335664 30334230 0.000000e+00 2139.0
8 TraesCS4B01G349700 chr2B 96.719 823 23 3 3453 4272 30331547 30330726 0.000000e+00 1367.0
9 TraesCS4B01G349700 chr2B 90.963 1007 32 23 2494 3461 30332723 30331737 0.000000e+00 1301.0
10 TraesCS4B01G349700 chr2B 96.852 540 13 2 1 536 267913086 267912547 0.000000e+00 900.0
11 TraesCS4B01G349700 chr2B 96.317 543 13 2 1 536 334879154 334878612 0.000000e+00 885.0
12 TraesCS4B01G349700 chr2B 95.370 540 20 3 1 536 334880241 334879703 0.000000e+00 854.0
13 TraesCS4B01G349700 chr2B 97.338 263 6 1 2231 2493 30334048 30333787 3.030000e-121 446.0
14 TraesCS4B01G349700 chr2B 77.857 280 27 19 3279 3551 211158741 211158992 1.600000e-29 141.0
15 TraesCS4B01G349700 chr3B 89.557 1647 97 29 914 2493 812459598 812461236 0.000000e+00 2019.0
16 TraesCS4B01G349700 chr3B 77.955 313 35 17 3247 3551 62383708 62383994 9.500000e-37 165.0
17 TraesCS4B01G349700 chr3B 93.182 44 2 1 3151 3193 62383630 62383673 3.570000e-06 63.9
18 TraesCS4B01G349700 chr5B 97.199 821 21 2 3453 4272 649444967 649444148 0.000000e+00 1387.0
19 TraesCS4B01G349700 chr5B 96.070 687 21 3 2494 3176 649446029 649445345 0.000000e+00 1114.0
20 TraesCS4B01G349700 chr5B 92.537 335 11 5 3141 3461 649445351 649445017 6.470000e-128 468.0
21 TraesCS4B01G349700 chr5B 93.750 80 4 1 1 79 272837943 272838022 7.500000e-23 119.0
22 TraesCS4B01G349700 chr5B 96.970 33 1 0 3425 3457 185222848 185222880 5.970000e-04 56.5
23 TraesCS4B01G349700 chrUn 94.861 720 28 4 73 784 49427901 49428619 0.000000e+00 1116.0
24 TraesCS4B01G349700 chrUn 85.043 575 38 15 3291 3857 64134493 64135027 3.760000e-150 542.0
25 TraesCS4B01G349700 chrUn 89.303 402 30 7 3457 3857 368435668 368436057 3.840000e-135 492.0
26 TraesCS4B01G349700 chrUn 88.806 402 32 4 3457 3857 31637323 31636934 8.310000e-132 481.0
27 TraesCS4B01G349700 chr3D 89.898 881 43 23 914 1749 604685813 604686692 0.000000e+00 1092.0
28 TraesCS4B01G349700 chr3D 89.460 759 60 12 1749 2493 604686728 604687480 0.000000e+00 941.0
29 TraesCS4B01G349700 chr3D 94.940 415 18 1 3858 4272 419468685 419469096 0.000000e+00 647.0
30 TraesCS4B01G349700 chr3D 95.455 352 11 3 211 560 12732408 12732060 1.340000e-154 556.0
31 TraesCS4B01G349700 chr3D 95.455 352 11 3 211 560 574894337 574893989 1.340000e-154 556.0
32 TraesCS4B01G349700 chr3D 89.303 402 30 7 3457 3857 519173558 519173169 3.840000e-135 492.0
33 TraesCS4B01G349700 chr3A 89.091 880 48 22 917 1749 734885639 734886517 0.000000e+00 1050.0
34 TraesCS4B01G349700 chr3A 88.864 880 48 24 917 1749 734840257 734841133 0.000000e+00 1037.0
35 TraesCS4B01G349700 chr3A 93.198 691 36 6 1749 2430 734841169 734841857 0.000000e+00 1005.0
36 TraesCS4B01G349700 chr3A 92.909 691 38 6 1749 2430 734886553 734887241 0.000000e+00 994.0
37 TraesCS4B01G349700 chr3A 95.192 416 19 1 3858 4272 706834367 706834782 0.000000e+00 656.0
38 TraesCS4B01G349700 chr3A 93.525 417 26 1 3857 4272 10964758 10965174 1.690000e-173 619.0
39 TraesCS4B01G349700 chr3A 78.413 315 34 10 3247 3553 33951870 33951582 1.580000e-39 174.0
40 TraesCS4B01G349700 chr3A 97.826 46 1 0 2446 2491 734842093 734842138 3.540000e-11 80.5
41 TraesCS4B01G349700 chr3A 97.826 46 1 0 2446 2491 734887477 734887522 3.540000e-11 80.5
42 TraesCS4B01G349700 chr5A 81.202 1314 139 54 1156 2372 623024435 623023133 0.000000e+00 959.0
43 TraesCS4B01G349700 chr5A 87.209 86 7 3 2494 2577 158249036 158249119 1.260000e-15 95.3
44 TraesCS4B01G349700 chr7B 96.111 540 17 2 1 536 115810675 115811214 0.000000e+00 878.0
45 TraesCS4B01G349700 chr7B 91.667 108 7 1 76 183 61809552 61809447 9.570000e-32 148.0
46 TraesCS4B01G349700 chr5D 81.702 858 80 27 2575 3359 179360122 179360975 1.000000e-180 643.0
47 TraesCS4B01G349700 chr5D 89.070 430 37 7 1818 2246 498731447 498731027 3.780000e-145 525.0
48 TraesCS4B01G349700 chr5D 96.364 220 6 2 558 776 112946775 112946557 1.130000e-95 361.0
49 TraesCS4B01G349700 chr6A 94.245 417 23 1 3857 4272 11417748 11417332 1.680000e-178 636.0
50 TraesCS4B01G349700 chr6A 93.750 416 25 1 3858 4272 11432803 11432388 1.300000e-174 623.0
51 TraesCS4B01G349700 chr4A 93.647 425 24 3 3849 4270 727746347 727746771 2.170000e-177 632.0
52 TraesCS4B01G349700 chr2D 95.376 346 11 3 217 560 86088968 86089310 2.900000e-151 545.0
53 TraesCS4B01G349700 chr2D 78.769 325 46 17 921 1231 547166308 547165993 3.370000e-46 196.0
54 TraesCS4B01G349700 chr2D 91.406 128 9 2 2494 2619 476921951 476921824 1.580000e-39 174.0
55 TraesCS4B01G349700 chr1A 89.303 402 30 7 3457 3857 514937359 514936970 3.840000e-135 492.0
56 TraesCS4B01G349700 chr1A 89.303 402 30 7 3457 3857 515194058 515193669 3.840000e-135 492.0
57 TraesCS4B01G349700 chr1A 80.479 292 37 6 3150 3425 48876482 48876195 5.600000e-49 206.0
58 TraesCS4B01G349700 chr4D 89.055 402 31 7 3457 3857 31538681 31539070 1.790000e-133 486.0
59 TraesCS4B01G349700 chr4D 100.000 28 0 0 3430 3457 425163402 425163375 8.000000e-03 52.8
60 TraesCS4B01G349700 chr6D 88.261 230 23 1 914 1143 7262162 7262387 5.440000e-69 272.0
61 TraesCS4B01G349700 chr6D 91.406 128 9 2 2494 2619 130277666 130277539 1.580000e-39 174.0
62 TraesCS4B01G349700 chr6D 91.406 128 9 2 2494 2619 367003398 367003271 1.580000e-39 174.0
63 TraesCS4B01G349700 chr6D 90.179 112 7 3 73 183 7260669 7260777 4.450000e-30 143.0
64 TraesCS4B01G349700 chr6D 94.937 79 4 0 1 79 22671839 22671761 1.610000e-24 124.0
65 TraesCS4B01G349700 chr6D 93.671 79 5 0 1 79 22356111 22356033 7.500000e-23 119.0
66 TraesCS4B01G349700 chr6D 92.405 79 6 0 1 79 22832403 22832325 3.490000e-21 113.0
67 TraesCS4B01G349700 chr2A 88.261 230 23 1 920 1149 17648024 17647799 5.440000e-69 272.0
68 TraesCS4B01G349700 chr2A 77.370 327 41 16 3247 3566 429128121 429127821 3.420000e-36 163.0
69 TraesCS4B01G349700 chr2A 92.593 108 6 1 76 183 17649466 17649361 2.060000e-33 154.0
70 TraesCS4B01G349700 chr1D 92.899 169 10 2 578 745 464634951 464635118 1.190000e-60 244.0
71 TraesCS4B01G349700 chr1D 96.970 33 1 0 3425 3457 111818625 111818657 5.970000e-04 56.5
72 TraesCS4B01G349700 chr1B 83.626 171 20 2 3247 3410 348055708 348055877 2.060000e-33 154.0
73 TraesCS4B01G349700 chr6B 91.753 97 6 1 87 183 626526620 626526714 2.680000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G349700 chr4B 642736125 642740396 4271 False 7890.000000 7890 100.000000 1 4272 1 chr4B.!!$F1 4271
1 TraesCS4B01G349700 chr7D 499624005 499627551 3546 True 5803.000000 5803 96.426000 774 4272 1 chr7D.!!$R1 3498
2 TraesCS4B01G349700 chr7A 109229191 109230796 1605 True 2632.000000 2632 96.335000 1031 2629 1 chr7A.!!$R2 1598
3 TraesCS4B01G349700 chr7A 61492124 61493737 1613 True 2610.000000 2610 95.926000 1031 2639 1 chr7A.!!$R1 1608
4 TraesCS4B01G349700 chr2B 30330726 30335664 4938 True 1313.250000 2139 94.587250 774 4272 4 chr2B.!!$R2 3498
5 TraesCS4B01G349700 chr2B 267912547 267913086 539 True 900.000000 900 96.852000 1 536 1 chr2B.!!$R1 535
6 TraesCS4B01G349700 chr2B 334878612 334880241 1629 True 869.500000 885 95.843500 1 536 2 chr2B.!!$R3 535
7 TraesCS4B01G349700 chr3B 812459598 812461236 1638 False 2019.000000 2019 89.557000 914 2493 1 chr3B.!!$F1 1579
8 TraesCS4B01G349700 chr5B 649444148 649446029 1881 True 989.666667 1387 95.268667 2494 4272 3 chr5B.!!$R1 1778
9 TraesCS4B01G349700 chrUn 49427901 49428619 718 False 1116.000000 1116 94.861000 73 784 1 chrUn.!!$F1 711
10 TraesCS4B01G349700 chrUn 64134493 64135027 534 False 542.000000 542 85.043000 3291 3857 1 chrUn.!!$F2 566
11 TraesCS4B01G349700 chr3D 604685813 604687480 1667 False 1016.500000 1092 89.679000 914 2493 2 chr3D.!!$F2 1579
12 TraesCS4B01G349700 chr3A 734885639 734887522 1883 False 708.166667 1050 93.275333 917 2491 3 chr3A.!!$F4 1574
13 TraesCS4B01G349700 chr3A 734840257 734842138 1881 False 707.500000 1037 93.296000 917 2491 3 chr3A.!!$F3 1574
14 TraesCS4B01G349700 chr5A 623023133 623024435 1302 True 959.000000 959 81.202000 1156 2372 1 chr5A.!!$R1 1216
15 TraesCS4B01G349700 chr7B 115810675 115811214 539 False 878.000000 878 96.111000 1 536 1 chr7B.!!$F1 535
16 TraesCS4B01G349700 chr5D 179360122 179360975 853 False 643.000000 643 81.702000 2575 3359 1 chr5D.!!$F1 784
17 TraesCS4B01G349700 chr6D 7260669 7262387 1718 False 207.500000 272 89.220000 73 1143 2 chr6D.!!$F1 1070
18 TraesCS4B01G349700 chr2A 17647799 17649466 1667 True 213.000000 272 90.427000 76 1149 2 chr2A.!!$R2 1073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 2107 0.108662 GAAAATCAAGGCCAAGGCGG 60.109 55.0 5.01 0.0 43.06 6.13 F
598 2123 0.589729 GCGGCTCATTTGCGTGTATG 60.590 55.0 0.00 0.0 0.00 2.39 F
624 2149 0.878416 GCTGGCACACAATCCGTTAA 59.122 50.0 0.00 0.0 0.00 2.01 F
2248 4370 0.597377 TGCGTCGGTGCTGCATATAG 60.597 55.0 5.27 0.0 32.86 1.31 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 4264 0.388649 CCGAGTGGTTCCACTTCTCG 60.389 60.000 22.93 20.48 45.99 4.04 R
2248 4370 7.578189 GCTTAACCAACCTTATTTTAGAACCCC 60.578 40.741 0.00 0.00 0.00 4.95 R
2823 6462 3.123621 CGCACTACATTGTCTCCTTGAAC 59.876 47.826 0.00 0.00 0.00 3.18 R
3868 7848 0.459411 GAAGAAGAGGAGCTGGCGAC 60.459 60.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 1154 4.400961 GGAGAAGCCAGCCAGCGT 62.401 66.667 0.00 0.00 38.01 5.07
183 1271 3.842923 CGCCGCAGATCACCCTCT 61.843 66.667 0.00 0.00 0.00 3.69
184 1272 2.202987 GCCGCAGATCACCCTCTG 60.203 66.667 0.00 0.00 44.51 3.35
188 1276 1.524482 GCAGATCACCCTCTGGTCC 59.476 63.158 0.00 0.00 45.57 4.46
189 1277 1.267574 GCAGATCACCCTCTGGTCCA 61.268 60.000 0.00 0.00 45.57 4.02
190 1278 1.504912 CAGATCACCCTCTGGTCCAT 58.495 55.000 0.00 0.00 45.57 3.41
191 1279 1.140452 CAGATCACCCTCTGGTCCATG 59.860 57.143 0.00 0.00 45.57 3.66
193 1281 1.639635 ATCACCCTCTGGTCCATGGC 61.640 60.000 6.96 1.78 45.57 4.40
197 1285 2.503061 CTCTGGTCCATGGCCTCG 59.497 66.667 21.23 14.19 0.00 4.63
198 1286 2.038813 TCTGGTCCATGGCCTCGA 59.961 61.111 21.23 15.74 0.00 4.04
199 1287 2.187946 CTGGTCCATGGCCTCGAC 59.812 66.667 21.23 6.59 0.00 4.20
200 1288 3.723235 CTGGTCCATGGCCTCGACG 62.723 68.421 21.23 0.00 0.00 5.12
201 1289 4.530857 GGTCCATGGCCTCGACGG 62.531 72.222 6.96 0.00 0.00 4.79
233 1321 3.546397 GCGCTCGCGTTCTTCCTC 61.546 66.667 13.18 0.00 42.09 3.71
234 1322 2.881352 CGCTCGCGTTCTTCCTCC 60.881 66.667 5.77 0.00 34.35 4.30
235 1323 2.509561 GCTCGCGTTCTTCCTCCC 60.510 66.667 5.77 0.00 0.00 4.30
236 1324 2.184579 CTCGCGTTCTTCCTCCCC 59.815 66.667 5.77 0.00 0.00 4.81
237 1325 3.372554 CTCGCGTTCTTCCTCCCCC 62.373 68.421 5.77 0.00 0.00 5.40
238 1326 3.702048 CGCGTTCTTCCTCCCCCA 61.702 66.667 0.00 0.00 0.00 4.96
242 1330 0.466124 CGTTCTTCCTCCCCCATCTC 59.534 60.000 0.00 0.00 0.00 2.75
253 1341 0.825840 CCCCATCTCGTCTCCTCTCC 60.826 65.000 0.00 0.00 0.00 3.71
254 1342 1.169661 CCCATCTCGTCTCCTCTCCG 61.170 65.000 0.00 0.00 0.00 4.63
255 1343 1.169661 CCATCTCGTCTCCTCTCCGG 61.170 65.000 0.00 0.00 0.00 5.14
256 1344 0.464735 CATCTCGTCTCCTCTCCGGT 60.465 60.000 0.00 0.00 0.00 5.28
257 1345 0.179040 ATCTCGTCTCCTCTCCGGTC 60.179 60.000 0.00 0.00 0.00 4.79
258 1346 2.125229 TCGTCTCCTCTCCGGTCG 60.125 66.667 0.00 0.00 0.00 4.79
260 1348 2.438795 GTCTCCTCTCCGGTCGCT 60.439 66.667 0.00 0.00 0.00 4.93
261 1349 2.438614 TCTCCTCTCCGGTCGCTG 60.439 66.667 0.00 0.00 0.00 5.18
264 1352 4.504916 CCTCTCCGGTCGCTGCAG 62.505 72.222 10.11 10.11 0.00 4.41
265 1353 3.443925 CTCTCCGGTCGCTGCAGA 61.444 66.667 20.43 0.00 0.00 4.26
266 1354 3.408501 CTCTCCGGTCGCTGCAGAG 62.409 68.421 20.43 15.90 0.00 3.35
267 1355 4.504916 CTCCGGTCGCTGCAGAGG 62.505 72.222 20.43 11.75 0.00 3.69
269 1357 4.504916 CCGGTCGCTGCAGAGGAG 62.505 72.222 20.43 9.19 0.00 3.69
271 1359 4.828925 GGTCGCTGCAGAGGAGCC 62.829 72.222 20.43 13.77 32.41 4.70
272 1360 4.828925 GTCGCTGCAGAGGAGCCC 62.829 72.222 20.43 0.00 32.41 5.19
276 1364 3.710722 CTGCAGAGGAGCCCCGTT 61.711 66.667 8.42 0.00 37.58 4.44
277 1365 3.249189 TGCAGAGGAGCCCCGTTT 61.249 61.111 0.00 0.00 37.58 3.60
278 1366 2.436824 GCAGAGGAGCCCCGTTTC 60.437 66.667 0.00 0.00 37.58 2.78
279 1367 2.125512 CAGAGGAGCCCCGTTTCG 60.126 66.667 0.00 0.00 37.58 3.46
280 1368 4.083862 AGAGGAGCCCCGTTTCGC 62.084 66.667 0.00 0.00 37.58 4.70
300 1388 3.751246 CGCCACCATGGTTGCCTG 61.751 66.667 29.65 16.37 40.46 4.85
301 1389 4.073200 GCCACCATGGTTGCCTGC 62.073 66.667 26.72 15.17 40.46 4.85
302 1390 2.601067 CCACCATGGTTGCCTGCA 60.601 61.111 16.84 0.00 31.35 4.41
303 1391 2.642254 CCACCATGGTTGCCTGCAG 61.642 63.158 16.84 6.78 31.35 4.41
304 1392 2.993264 ACCATGGTTGCCTGCAGC 60.993 61.111 13.00 4.57 44.14 5.25
321 1409 3.926003 CGAGCAGCAGAGGACCTA 58.074 61.111 0.00 0.00 0.00 3.08
322 1410 1.732917 CGAGCAGCAGAGGACCTAG 59.267 63.158 0.00 0.00 0.00 3.02
325 1413 2.811101 CAGCAGAGGACCTAGCCG 59.189 66.667 13.36 1.65 0.00 5.52
356 1444 4.038080 CAACCGCCGCCTGAAACC 62.038 66.667 0.00 0.00 0.00 3.27
360 1448 2.511600 CGCCGCCTGAAACCCTAG 60.512 66.667 0.00 0.00 0.00 3.02
363 1513 2.124695 CGCCTGAAACCCTAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
372 1522 2.132946 AACCCTAGCCCCTCCTTCCA 62.133 60.000 0.00 0.00 0.00 3.53
373 1523 1.307866 CCCTAGCCCCTCCTTCCAA 60.308 63.158 0.00 0.00 0.00 3.53
375 1525 0.621862 CCTAGCCCCTCCTTCCAACT 60.622 60.000 0.00 0.00 0.00 3.16
376 1526 0.543749 CTAGCCCCTCCTTCCAACTG 59.456 60.000 0.00 0.00 0.00 3.16
377 1527 1.562672 TAGCCCCTCCTTCCAACTGC 61.563 60.000 0.00 0.00 0.00 4.40
378 1528 3.170362 CCCCTCCTTCCAACTGCA 58.830 61.111 0.00 0.00 0.00 4.41
379 1529 1.001641 CCCCTCCTTCCAACTGCAG 60.002 63.158 13.48 13.48 0.00 4.41
380 1530 1.001641 CCCTCCTTCCAACTGCAGG 60.002 63.158 19.93 0.43 0.00 4.85
381 1531 1.763770 CCTCCTTCCAACTGCAGGT 59.236 57.895 19.93 9.19 0.00 4.00
382 1532 0.322008 CCTCCTTCCAACTGCAGGTC 60.322 60.000 19.93 0.00 0.00 3.85
383 1533 0.397941 CTCCTTCCAACTGCAGGTCA 59.602 55.000 19.93 0.00 0.00 4.02
384 1534 0.843309 TCCTTCCAACTGCAGGTCAA 59.157 50.000 19.93 5.55 0.00 3.18
385 1535 1.202806 TCCTTCCAACTGCAGGTCAAG 60.203 52.381 19.93 15.09 0.00 3.02
386 1536 0.595095 CTTCCAACTGCAGGTCAAGC 59.405 55.000 19.93 0.00 0.00 4.01
387 1537 0.823356 TTCCAACTGCAGGTCAAGCC 60.823 55.000 19.93 0.00 37.58 4.35
388 1538 1.529010 CCAACTGCAGGTCAAGCCA 60.529 57.895 19.93 0.00 40.61 4.75
389 1539 1.521450 CCAACTGCAGGTCAAGCCAG 61.521 60.000 19.93 0.00 40.61 4.85
394 1544 2.752358 CAGGTCAAGCCAGCAGGA 59.248 61.111 0.00 0.00 40.61 3.86
395 1545 1.302285 CAGGTCAAGCCAGCAGGAT 59.698 57.895 0.00 0.00 40.61 3.24
396 1546 0.747283 CAGGTCAAGCCAGCAGGATC 60.747 60.000 0.00 0.00 40.61 3.36
410 1560 2.141312 GGATCCCCTCCAGAAGAGC 58.859 63.158 0.00 0.00 44.26 4.09
411 1561 0.692419 GGATCCCCTCCAGAAGAGCA 60.692 60.000 0.00 0.00 44.26 4.26
412 1562 1.433121 GATCCCCTCCAGAAGAGCAT 58.567 55.000 0.00 0.00 41.74 3.79
413 1563 1.773653 GATCCCCTCCAGAAGAGCATT 59.226 52.381 0.00 0.00 41.74 3.56
415 1565 1.283029 TCCCCTCCAGAAGAGCATTTG 59.717 52.381 0.00 0.00 41.74 2.32
416 1566 1.283029 CCCCTCCAGAAGAGCATTTGA 59.717 52.381 0.00 0.00 41.74 2.69
417 1567 2.091994 CCCCTCCAGAAGAGCATTTGAT 60.092 50.000 0.00 0.00 41.74 2.57
434 1769 3.321648 TGCGTGAGTGCATCCCCT 61.322 61.111 0.00 0.00 40.62 4.79
441 1776 1.556911 TGAGTGCATCCCCTTCTCTTC 59.443 52.381 0.00 0.00 0.00 2.87
442 1777 1.836802 GAGTGCATCCCCTTCTCTTCT 59.163 52.381 0.00 0.00 0.00 2.85
446 1781 2.915604 TGCATCCCCTTCTCTTCTTCTT 59.084 45.455 0.00 0.00 0.00 2.52
447 1782 3.054802 TGCATCCCCTTCTCTTCTTCTTC 60.055 47.826 0.00 0.00 0.00 2.87
448 1783 3.199727 GCATCCCCTTCTCTTCTTCTTCT 59.800 47.826 0.00 0.00 0.00 2.85
452 1787 5.158889 TCCCCTTCTCTTCTTCTTCTTCTT 58.841 41.667 0.00 0.00 0.00 2.52
454 1789 5.248248 CCCCTTCTCTTCTTCTTCTTCTTCT 59.752 44.000 0.00 0.00 0.00 2.85
456 1791 6.873605 CCCTTCTCTTCTTCTTCTTCTTCTTC 59.126 42.308 0.00 0.00 0.00 2.87
457 1792 7.256296 CCCTTCTCTTCTTCTTCTTCTTCTTCT 60.256 40.741 0.00 0.00 0.00 2.85
459 1794 6.908825 TCTCTTCTTCTTCTTCTTCTTCTCG 58.091 40.000 0.00 0.00 0.00 4.04
462 1797 7.891561 TCTTCTTCTTCTTCTTCTTCTCGATT 58.108 34.615 0.00 0.00 0.00 3.34
463 1798 8.364142 TCTTCTTCTTCTTCTTCTTCTCGATTT 58.636 33.333 0.00 0.00 0.00 2.17
464 1799 7.881643 TCTTCTTCTTCTTCTTCTCGATTTG 57.118 36.000 0.00 0.00 0.00 2.32
465 1800 7.661968 TCTTCTTCTTCTTCTTCTCGATTTGA 58.338 34.615 0.00 0.00 0.00 2.69
467 1802 7.824704 TCTTCTTCTTCTTCTCGATTTGATG 57.175 36.000 0.00 0.00 0.00 3.07
468 1803 7.382110 TCTTCTTCTTCTTCTCGATTTGATGT 58.618 34.615 0.00 0.00 0.00 3.06
469 1804 6.957984 TCTTCTTCTTCTCGATTTGATGTG 57.042 37.500 0.00 0.00 0.00 3.21
470 1805 6.459066 TCTTCTTCTTCTCGATTTGATGTGT 58.541 36.000 0.00 0.00 0.00 3.72
471 1806 6.367149 TCTTCTTCTTCTCGATTTGATGTGTG 59.633 38.462 0.00 0.00 0.00 3.82
473 1808 2.667969 TCTTCTCGATTTGATGTGTGCG 59.332 45.455 0.00 0.00 0.00 5.34
474 1809 2.078849 TCTCGATTTGATGTGTGCGT 57.921 45.000 0.00 0.00 0.00 5.24
475 1810 1.726248 TCTCGATTTGATGTGTGCGTG 59.274 47.619 0.00 0.00 0.00 5.34
476 1811 0.165727 TCGATTTGATGTGTGCGTGC 59.834 50.000 0.00 0.00 0.00 5.34
477 1812 1.121850 CGATTTGATGTGTGCGTGCG 61.122 55.000 0.00 0.00 0.00 5.34
478 1813 0.110238 GATTTGATGTGTGCGTGCGT 60.110 50.000 0.00 0.00 0.00 5.24
479 1814 0.385849 ATTTGATGTGTGCGTGCGTG 60.386 50.000 0.00 0.00 0.00 5.34
481 1816 3.716006 GATGTGTGCGTGCGTGCT 61.716 61.111 1.52 0.00 35.36 4.40
482 1817 3.916371 GATGTGTGCGTGCGTGCTG 62.916 63.158 1.52 0.00 35.36 4.41
485 1820 4.235025 TGTGCGTGCGTGCTGTTG 62.235 61.111 1.52 0.00 35.36 3.33
487 1822 4.235025 TGCGTGCGTGCTGTTGTG 62.235 61.111 1.52 0.00 35.36 3.33
488 1823 4.236416 GCGTGCGTGCTGTTGTGT 62.236 61.111 0.00 0.00 0.00 3.72
489 1824 2.351097 CGTGCGTGCTGTTGTGTG 60.351 61.111 0.00 0.00 0.00 3.82
490 1825 2.651863 GTGCGTGCTGTTGTGTGC 60.652 61.111 0.00 0.00 0.00 4.57
491 1826 3.130160 TGCGTGCTGTTGTGTGCA 61.130 55.556 0.00 0.00 36.79 4.57
495 1830 3.218470 TGCTGTTGTGTGCAGGCC 61.218 61.111 0.00 0.00 34.84 5.19
496 1831 3.982241 GCTGTTGTGTGCAGGCCC 61.982 66.667 0.00 0.00 34.73 5.80
497 1832 3.663176 CTGTTGTGTGCAGGCCCG 61.663 66.667 0.00 0.00 0.00 6.13
499 1834 3.660111 GTTGTGTGCAGGCCCGAC 61.660 66.667 0.00 0.00 0.00 4.79
500 1835 3.872603 TTGTGTGCAGGCCCGACT 61.873 61.111 0.00 0.00 0.00 4.18
502 1837 4.314440 GTGTGCAGGCCCGACTCA 62.314 66.667 0.00 0.00 0.00 3.41
503 1838 3.321648 TGTGCAGGCCCGACTCAT 61.322 61.111 0.00 0.00 0.00 2.90
504 1839 2.512515 GTGCAGGCCCGACTCATC 60.513 66.667 0.00 0.00 0.00 2.92
505 1840 2.685017 TGCAGGCCCGACTCATCT 60.685 61.111 0.00 0.00 0.00 2.90
506 1841 2.107953 GCAGGCCCGACTCATCTC 59.892 66.667 0.00 0.00 0.00 2.75
508 1843 1.440893 CAGGCCCGACTCATCTCTG 59.559 63.158 0.00 0.00 0.00 3.35
509 1844 2.107953 GGCCCGACTCATCTCTGC 59.892 66.667 0.00 0.00 0.00 4.26
510 1845 2.430610 GGCCCGACTCATCTCTGCT 61.431 63.158 0.00 0.00 0.00 4.24
511 1846 1.519719 GCCCGACTCATCTCTGCTT 59.480 57.895 0.00 0.00 0.00 3.91
512 1847 0.809241 GCCCGACTCATCTCTGCTTG 60.809 60.000 0.00 0.00 0.00 4.01
513 1848 0.534412 CCCGACTCATCTCTGCTTGT 59.466 55.000 0.00 0.00 0.00 3.16
514 1849 1.638133 CCGACTCATCTCTGCTTGTG 58.362 55.000 0.00 0.00 0.00 3.33
518 1853 1.071228 ACTCATCTCTGCTTGTGCACA 59.929 47.619 17.42 17.42 45.31 4.57
519 1854 2.148768 CTCATCTCTGCTTGTGCACAA 58.851 47.619 29.36 29.36 45.31 3.33
522 1857 1.748950 TCTCTGCTTGTGCACAACAA 58.251 45.000 27.96 17.20 46.66 2.83
530 1865 1.388547 TGTGCACAACAAGGAAGGTC 58.611 50.000 19.28 0.00 35.24 3.85
553 2078 2.674796 GAGACGTTGCTCCCTATGTT 57.325 50.000 0.00 0.00 0.00 2.71
554 2079 2.973945 GAGACGTTGCTCCCTATGTTT 58.026 47.619 0.00 0.00 0.00 2.83
555 2080 4.119442 GAGACGTTGCTCCCTATGTTTA 57.881 45.455 0.00 0.00 0.00 2.01
556 2081 4.113354 GAGACGTTGCTCCCTATGTTTAG 58.887 47.826 0.00 0.00 0.00 1.85
557 2082 2.608090 GACGTTGCTCCCTATGTTTAGC 59.392 50.000 0.00 0.00 35.51 3.09
558 2083 1.593006 CGTTGCTCCCTATGTTTAGCG 59.407 52.381 0.00 0.00 37.80 4.26
559 2084 1.330829 GTTGCTCCCTATGTTTAGCGC 59.669 52.381 0.00 0.00 37.80 5.92
560 2085 0.539518 TGCTCCCTATGTTTAGCGCA 59.460 50.000 11.47 0.00 37.80 6.09
561 2086 1.140852 TGCTCCCTATGTTTAGCGCAT 59.859 47.619 11.47 0.00 37.80 4.73
562 2087 2.367241 TGCTCCCTATGTTTAGCGCATA 59.633 45.455 11.47 0.00 37.80 3.14
563 2088 2.996621 GCTCCCTATGTTTAGCGCATAG 59.003 50.000 11.47 7.48 43.12 2.23
564 2089 3.306088 GCTCCCTATGTTTAGCGCATAGA 60.306 47.826 11.47 0.00 45.10 1.98
565 2090 4.799586 GCTCCCTATGTTTAGCGCATAGAA 60.800 45.833 11.47 0.00 45.10 2.10
566 2091 5.284861 TCCCTATGTTTAGCGCATAGAAA 57.715 39.130 11.47 0.98 45.10 2.52
567 2092 5.676552 TCCCTATGTTTAGCGCATAGAAAA 58.323 37.500 11.47 0.00 45.10 2.29
568 2093 6.296026 TCCCTATGTTTAGCGCATAGAAAAT 58.704 36.000 11.47 1.57 45.10 1.82
569 2094 6.426937 TCCCTATGTTTAGCGCATAGAAAATC 59.573 38.462 11.47 0.00 45.10 2.17
570 2095 6.204688 CCCTATGTTTAGCGCATAGAAAATCA 59.795 38.462 11.47 0.41 45.10 2.57
571 2096 7.255104 CCCTATGTTTAGCGCATAGAAAATCAA 60.255 37.037 11.47 0.00 45.10 2.57
572 2097 7.800380 CCTATGTTTAGCGCATAGAAAATCAAG 59.200 37.037 11.47 1.22 45.10 3.02
573 2098 5.879237 TGTTTAGCGCATAGAAAATCAAGG 58.121 37.500 11.47 0.00 0.00 3.61
574 2099 4.552166 TTAGCGCATAGAAAATCAAGGC 57.448 40.909 11.47 0.00 0.00 4.35
575 2100 1.678101 AGCGCATAGAAAATCAAGGCC 59.322 47.619 11.47 0.00 0.00 5.19
576 2101 1.405105 GCGCATAGAAAATCAAGGCCA 59.595 47.619 5.01 0.00 0.00 5.36
577 2102 2.159254 GCGCATAGAAAATCAAGGCCAA 60.159 45.455 5.01 0.00 0.00 4.52
578 2103 3.699067 CGCATAGAAAATCAAGGCCAAG 58.301 45.455 5.01 0.00 0.00 3.61
579 2104 3.489738 CGCATAGAAAATCAAGGCCAAGG 60.490 47.826 5.01 0.00 0.00 3.61
580 2105 3.739209 GCATAGAAAATCAAGGCCAAGGC 60.739 47.826 5.01 1.52 41.06 4.35
581 2106 0.890683 AGAAAATCAAGGCCAAGGCG 59.109 50.000 5.01 0.00 43.06 5.52
582 2107 0.108662 GAAAATCAAGGCCAAGGCGG 60.109 55.000 5.01 0.00 43.06 6.13
591 2116 2.182537 CCAAGGCGGCTCATTTGC 59.817 61.111 13.70 0.00 0.00 3.68
592 2117 2.202518 CAAGGCGGCTCATTTGCG 60.203 61.111 13.70 0.00 0.00 4.85
593 2118 2.672996 AAGGCGGCTCATTTGCGT 60.673 55.556 13.70 0.00 0.00 5.24
594 2119 2.981560 AAGGCGGCTCATTTGCGTG 61.982 57.895 13.70 0.00 0.00 5.34
595 2120 3.737172 GGCGGCTCATTTGCGTGT 61.737 61.111 0.00 0.00 0.00 4.49
596 2121 2.395360 GGCGGCTCATTTGCGTGTA 61.395 57.895 0.00 0.00 0.00 2.90
597 2122 1.714899 GGCGGCTCATTTGCGTGTAT 61.715 55.000 0.00 0.00 0.00 2.29
598 2123 0.589729 GCGGCTCATTTGCGTGTATG 60.590 55.000 0.00 0.00 0.00 2.39
602 2127 2.916716 GGCTCATTTGCGTGTATGTTTG 59.083 45.455 0.00 0.00 0.00 2.93
612 2137 0.958091 TGTATGTTTGTGGCTGGCAC 59.042 50.000 25.55 25.55 0.00 5.01
613 2138 0.958091 GTATGTTTGTGGCTGGCACA 59.042 50.000 30.12 30.12 0.00 4.57
614 2139 0.958091 TATGTTTGTGGCTGGCACAC 59.042 50.000 32.99 23.43 39.26 3.82
615 2140 1.042003 ATGTTTGTGGCTGGCACACA 61.042 50.000 32.99 27.62 46.22 3.72
618 2143 3.762293 TGTGGCTGGCACACAATC 58.238 55.556 30.12 6.62 45.05 2.67
619 2144 1.902918 TGTGGCTGGCACACAATCC 60.903 57.895 30.12 5.89 45.05 3.01
620 2145 2.672651 TGGCTGGCACACAATCCG 60.673 61.111 0.00 0.00 0.00 4.18
622 2147 2.268076 GGCTGGCACACAATCCGTT 61.268 57.895 0.00 0.00 0.00 4.44
623 2148 0.958382 GGCTGGCACACAATCCGTTA 60.958 55.000 0.00 0.00 0.00 3.18
624 2149 0.878416 GCTGGCACACAATCCGTTAA 59.122 50.000 0.00 0.00 0.00 2.01
629 2154 2.752903 GGCACACAATCCGTTAATCCTT 59.247 45.455 0.00 0.00 0.00 3.36
633 2158 5.563867 GCACACAATCCGTTAATCCTTCAAA 60.564 40.000 0.00 0.00 0.00 2.69
634 2159 6.620678 CACACAATCCGTTAATCCTTCAAAT 58.379 36.000 0.00 0.00 0.00 2.32
635 2160 7.090173 CACACAATCCGTTAATCCTTCAAATT 58.910 34.615 0.00 0.00 0.00 1.82
636 2161 7.598493 CACACAATCCGTTAATCCTTCAAATTT 59.402 33.333 0.00 0.00 0.00 1.82
637 2162 8.147704 ACACAATCCGTTAATCCTTCAAATTTT 58.852 29.630 0.00 0.00 0.00 1.82
638 2163 8.647226 CACAATCCGTTAATCCTTCAAATTTTC 58.353 33.333 0.00 0.00 0.00 2.29
639 2164 7.540745 ACAATCCGTTAATCCTTCAAATTTTCG 59.459 33.333 0.00 0.00 0.00 3.46
646 2184 4.909696 TCCTTCAAATTTTCGCACAGAA 57.090 36.364 0.00 0.00 37.01 3.02
648 2186 3.983344 CCTTCAAATTTTCGCACAGAAGG 59.017 43.478 13.66 13.66 43.02 3.46
662 2200 4.137543 CACAGAAGGTGCCCTATTTATCC 58.862 47.826 0.00 0.00 41.36 2.59
663 2201 4.047883 ACAGAAGGTGCCCTATTTATCCT 58.952 43.478 0.00 0.00 31.13 3.24
664 2202 4.103311 ACAGAAGGTGCCCTATTTATCCTC 59.897 45.833 0.00 0.00 31.13 3.71
665 2203 4.349342 CAGAAGGTGCCCTATTTATCCTCT 59.651 45.833 0.00 0.00 31.13 3.69
668 2206 5.053978 AGGTGCCCTATTTATCCTCTTTG 57.946 43.478 0.00 0.00 28.47 2.77
669 2207 3.570125 GGTGCCCTATTTATCCTCTTTGC 59.430 47.826 0.00 0.00 0.00 3.68
670 2208 4.207165 GTGCCCTATTTATCCTCTTTGCA 58.793 43.478 0.00 0.00 0.00 4.08
672 2210 5.302823 GTGCCCTATTTATCCTCTTTGCATT 59.697 40.000 0.00 0.00 0.00 3.56
712 2250 7.672983 TTTTTAGATTGTTTGTGTTGGCAAA 57.327 28.000 0.00 0.00 36.17 3.68
714 2252 6.841443 TTAGATTGTTTGTGTTGGCAAATG 57.159 33.333 0.00 0.00 40.01 2.32
715 2253 4.128643 AGATTGTTTGTGTTGGCAAATGG 58.871 39.130 0.00 0.00 40.01 3.16
718 2707 3.942829 TGTTTGTGTTGGCAAATGGAAA 58.057 36.364 0.00 0.00 40.01 3.13
720 2709 4.394300 TGTTTGTGTTGGCAAATGGAAAAG 59.606 37.500 0.00 0.00 40.01 2.27
721 2710 3.191078 TGTGTTGGCAAATGGAAAAGG 57.809 42.857 0.00 0.00 0.00 3.11
723 2712 3.130633 GTGTTGGCAAATGGAAAAGGAC 58.869 45.455 0.00 0.00 0.00 3.85
726 2715 1.885887 TGGCAAATGGAAAAGGACTCG 59.114 47.619 0.00 0.00 0.00 4.18
728 2717 2.159382 GCAAATGGAAAAGGACTCGGA 58.841 47.619 0.00 0.00 0.00 4.55
731 2720 4.675408 GCAAATGGAAAAGGACTCGGAATC 60.675 45.833 0.00 0.00 0.00 2.52
740 2729 4.143986 AGGACTCGGAATCCTTGATTTC 57.856 45.455 1.34 0.00 44.64 2.17
744 2733 5.163395 GGACTCGGAATCCTTGATTTCTACT 60.163 44.000 0.00 0.00 31.89 2.57
748 2737 6.889198 TCGGAATCCTTGATTTCTACTGATT 58.111 36.000 0.00 0.00 31.89 2.57
765 2754 9.559732 TCTACTGATTTTGAATTTCAGTCTCAA 57.440 29.630 11.96 0.00 45.16 3.02
774 2763 9.965824 TTTGAATTTCAGTCTCAAATTAGTTCC 57.034 29.630 0.00 0.00 34.88 3.62
776 2765 9.003658 TGAATTTCAGTCTCAAATTAGTTCCTC 57.996 33.333 0.00 0.00 34.30 3.71
852 2841 2.674754 GTGAATCCCCTCCGCCAA 59.325 61.111 0.00 0.00 0.00 4.52
968 2957 7.295201 TCACAGCACGAATTAGTAATTTGAAC 58.705 34.615 23.96 16.27 36.08 3.18
971 2960 6.523201 CAGCACGAATTAGTAATTTGAACACC 59.477 38.462 23.96 10.42 36.08 4.16
1007 2996 1.327764 CCTCGGAAAGCTAATGAACGC 59.672 52.381 0.00 0.00 0.00 4.84
1022 3011 6.603237 AATGAACGCGAATGAAGATTATGA 57.397 33.333 15.93 0.00 0.00 2.15
1224 3225 3.334054 AGGCAGGGGTCTGGAAGC 61.334 66.667 0.00 0.00 41.19 3.86
1243 3244 1.708822 CGCATGCCGCAGTATATACA 58.291 50.000 13.15 0.00 42.60 2.29
1249 3250 1.939838 GCCGCAGTATATACAGTGGGC 60.940 57.143 28.81 23.78 41.80 5.36
1296 3297 3.252974 AGTGATCTCTTGGTTAAGGCG 57.747 47.619 0.00 0.00 34.59 5.52
1421 3422 1.518325 TGTTGACGAATCGCATTGGT 58.482 45.000 1.15 0.00 33.75 3.67
1422 3423 1.463056 TGTTGACGAATCGCATTGGTC 59.537 47.619 1.15 13.26 44.89 4.02
1500 3528 2.251409 ATTGCTCATCGAGTCATGGG 57.749 50.000 0.00 0.00 31.39 4.00
1611 3650 2.951642 TCAAAGCAGAAGGAAACCAGTG 59.048 45.455 0.00 0.00 0.00 3.66
1791 3902 5.874261 ACCCTCAAGTTTTGTTGTTTCAATG 59.126 36.000 0.00 0.00 0.00 2.82
1964 4085 3.826157 TGAATCCTTTGCCAGGTTAACTG 59.174 43.478 5.42 0.00 44.37 3.16
2034 4155 7.513781 TCCTCCCATCTTCTACATGAATGATAA 59.486 37.037 0.00 0.00 33.71 1.75
2042 4163 8.753133 TCTTCTACATGAATGATAAGTCACACT 58.247 33.333 0.00 0.00 37.14 3.55
2135 4257 7.450014 TCTTTCAACCAACTGCAGGATAATTAA 59.550 33.333 19.93 1.92 0.00 1.40
2142 4264 6.404734 CCAACTGCAGGATAATTAACCTTGTC 60.405 42.308 19.93 5.33 33.91 3.18
2248 4370 0.597377 TGCGTCGGTGCTGCATATAG 60.597 55.000 5.27 0.00 32.86 1.31
2554 6191 2.833913 AAGGTCAGCCCCCACACTG 61.834 63.158 0.00 0.00 34.57 3.66
2803 6442 5.475220 TGAAATGGAAAATAACTTCAGCCGA 59.525 36.000 0.00 0.00 0.00 5.54
2822 6461 8.100791 TCAGCCGATAATTTGGTATTTAGCTAT 58.899 33.333 0.00 0.00 0.00 2.97
2823 6462 8.177663 CAGCCGATAATTTGGTATTTAGCTATG 58.822 37.037 0.00 0.00 0.00 2.23
2931 6574 2.858476 TCCCCCTGCAAGAAGCCA 60.858 61.111 0.00 0.00 44.83 4.75
3049 6714 8.266473 ACATTGTGATTTAATGGCACCAATTAT 58.734 29.630 0.00 0.00 39.30 1.28
3423 7139 5.184892 AGCTCTGGTGTCATCCTATTTTT 57.815 39.130 0.00 0.00 0.00 1.94
3561 7536 9.800572 AGATGACTAAGAGTAGCAGTAATATCA 57.199 33.333 0.00 0.00 0.00 2.15
3798 7778 9.155975 CATTCAACTTCTAGCATACTACAAGTT 57.844 33.333 1.63 1.63 43.95 2.66
3868 7848 3.070018 CTGTAGTCTTTGTTGGAGCTGG 58.930 50.000 0.00 0.00 0.00 4.85
3931 7911 3.363178 CTCACGCAAGAACAAAAGAACC 58.637 45.455 0.00 0.00 43.62 3.62
3975 7955 0.182775 ACACAGCCGACCCTTTTCTT 59.817 50.000 0.00 0.00 0.00 2.52
4142 8122 1.611977 CACTCTAGGAACCACACGACA 59.388 52.381 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 1154 0.404426 TGAGGAGGAGGTCAGAACGA 59.596 55.000 0.00 0.00 0.00 3.85
183 1271 3.770040 CGTCGAGGCCATGGACCA 61.770 66.667 16.13 0.00 33.34 4.02
184 1272 4.530857 CCGTCGAGGCCATGGACC 62.531 72.222 16.13 15.57 33.34 4.46
216 1304 3.546397 GAGGAAGAACGCGAGCGC 61.546 66.667 15.93 8.99 44.19 5.92
217 1305 2.881352 GGAGGAAGAACGCGAGCG 60.881 66.667 15.93 16.38 46.03 5.03
218 1306 2.509561 GGGAGGAAGAACGCGAGC 60.510 66.667 15.93 3.51 0.00 5.03
219 1307 2.184579 GGGGAGGAAGAACGCGAG 59.815 66.667 15.93 0.00 0.00 5.03
220 1308 3.387947 GGGGGAGGAAGAACGCGA 61.388 66.667 15.93 0.00 0.00 5.87
221 1309 2.925162 GATGGGGGAGGAAGAACGCG 62.925 65.000 3.53 3.53 0.00 6.01
222 1310 1.153147 GATGGGGGAGGAAGAACGC 60.153 63.158 0.00 0.00 0.00 4.84
223 1311 0.466124 GAGATGGGGGAGGAAGAACG 59.534 60.000 0.00 0.00 0.00 3.95
224 1312 0.466124 CGAGATGGGGGAGGAAGAAC 59.534 60.000 0.00 0.00 0.00 3.01
225 1313 0.042731 ACGAGATGGGGGAGGAAGAA 59.957 55.000 0.00 0.00 0.00 2.52
226 1314 0.397254 GACGAGATGGGGGAGGAAGA 60.397 60.000 0.00 0.00 0.00 2.87
227 1315 0.397816 AGACGAGATGGGGGAGGAAG 60.398 60.000 0.00 0.00 0.00 3.46
228 1316 0.397254 GAGACGAGATGGGGGAGGAA 60.397 60.000 0.00 0.00 0.00 3.36
229 1317 1.230497 GAGACGAGATGGGGGAGGA 59.770 63.158 0.00 0.00 0.00 3.71
230 1318 1.834822 GGAGACGAGATGGGGGAGG 60.835 68.421 0.00 0.00 0.00 4.30
231 1319 0.825840 GAGGAGACGAGATGGGGGAG 60.826 65.000 0.00 0.00 0.00 4.30
232 1320 1.230497 GAGGAGACGAGATGGGGGA 59.770 63.158 0.00 0.00 0.00 4.81
233 1321 0.825840 GAGAGGAGACGAGATGGGGG 60.826 65.000 0.00 0.00 0.00 5.40
234 1322 0.825840 GGAGAGGAGACGAGATGGGG 60.826 65.000 0.00 0.00 0.00 4.96
235 1323 1.169661 CGGAGAGGAGACGAGATGGG 61.170 65.000 0.00 0.00 0.00 4.00
236 1324 1.169661 CCGGAGAGGAGACGAGATGG 61.170 65.000 0.00 0.00 45.00 3.51
237 1325 0.464735 ACCGGAGAGGAGACGAGATG 60.465 60.000 9.46 0.00 45.00 2.90
238 1326 0.179040 GACCGGAGAGGAGACGAGAT 60.179 60.000 9.46 0.00 45.00 2.75
242 1330 3.878519 GCGACCGGAGAGGAGACG 61.879 72.222 9.46 1.70 45.00 4.18
254 1342 4.828925 GGCTCCTCTGCAGCGACC 62.829 72.222 9.47 7.50 37.81 4.79
255 1343 4.828925 GGGCTCCTCTGCAGCGAC 62.829 72.222 9.47 0.00 37.81 5.19
260 1348 3.249189 AAACGGGGCTCCTCTGCA 61.249 61.111 0.00 0.00 34.04 4.41
261 1349 2.436824 GAAACGGGGCTCCTCTGC 60.437 66.667 0.00 0.00 0.00 4.26
263 1351 4.083862 GCGAAACGGGGCTCCTCT 62.084 66.667 0.00 0.00 0.00 3.69
283 1371 3.751246 CAGGCAACCATGGTGGCG 61.751 66.667 33.13 19.61 45.55 5.69
284 1372 4.073200 GCAGGCAACCATGGTGGC 62.073 66.667 33.02 33.02 42.67 5.01
285 1373 2.601067 TGCAGGCAACCATGGTGG 60.601 61.111 20.60 18.01 45.02 4.61
286 1374 2.967397 CTGCAGGCAACCATGGTG 59.033 61.111 20.60 13.75 37.17 4.17
287 1375 2.993264 GCTGCAGGCAACCATGGT 60.993 61.111 13.00 13.00 41.35 3.55
288 1376 4.124351 CGCTGCAGGCAACCATGG 62.124 66.667 17.12 11.19 41.91 3.66
289 1377 3.047718 CTCGCTGCAGGCAACCATG 62.048 63.158 17.12 0.00 41.91 3.66
290 1378 2.749044 CTCGCTGCAGGCAACCAT 60.749 61.111 17.12 0.00 41.91 3.55
300 1388 4.447989 TCCTCTGCTGCTCGCTGC 62.448 66.667 12.97 12.97 40.11 5.25
301 1389 2.508887 GTCCTCTGCTGCTCGCTG 60.509 66.667 0.00 0.45 40.11 5.18
302 1390 2.845638 TAGGTCCTCTGCTGCTCGCT 62.846 60.000 0.00 0.00 40.11 4.93
303 1391 2.348605 CTAGGTCCTCTGCTGCTCGC 62.349 65.000 0.00 0.00 39.77 5.03
304 1392 1.732917 CTAGGTCCTCTGCTGCTCG 59.267 63.158 0.00 0.00 0.00 5.03
305 1393 1.441311 GCTAGGTCCTCTGCTGCTC 59.559 63.158 0.00 0.00 0.00 4.26
306 1394 2.063378 GGCTAGGTCCTCTGCTGCT 61.063 63.158 14.18 0.00 0.00 4.24
307 1395 2.503546 GGCTAGGTCCTCTGCTGC 59.496 66.667 14.18 0.00 0.00 5.25
308 1396 2.811101 CGGCTAGGTCCTCTGCTG 59.189 66.667 14.18 12.22 0.00 4.41
309 1397 3.151022 GCGGCTAGGTCCTCTGCT 61.151 66.667 14.18 0.00 0.00 4.24
310 1398 4.228567 GGCGGCTAGGTCCTCTGC 62.229 72.222 0.00 0.90 0.00 4.26
311 1399 3.905678 CGGCGGCTAGGTCCTCTG 61.906 72.222 7.61 0.00 0.00 3.35
350 1438 0.178843 AAGGAGGGGCTAGGGTTTCA 60.179 55.000 0.00 0.00 0.00 2.69
351 1439 0.547075 GAAGGAGGGGCTAGGGTTTC 59.453 60.000 0.00 0.00 0.00 2.78
352 1440 0.919780 GGAAGGAGGGGCTAGGGTTT 60.920 60.000 0.00 0.00 0.00 3.27
353 1441 1.307953 GGAAGGAGGGGCTAGGGTT 60.308 63.158 0.00 0.00 0.00 4.11
354 1442 2.132946 TTGGAAGGAGGGGCTAGGGT 62.133 60.000 0.00 0.00 0.00 4.34
356 1444 0.621862 AGTTGGAAGGAGGGGCTAGG 60.622 60.000 0.00 0.00 0.00 3.02
358 1446 1.562672 GCAGTTGGAAGGAGGGGCTA 61.563 60.000 0.00 0.00 0.00 3.93
360 1448 2.361737 GCAGTTGGAAGGAGGGGC 60.362 66.667 0.00 0.00 0.00 5.80
363 1513 4.730487 CCTGCAGTTGGAAGGAGG 57.270 61.111 13.81 0.00 37.01 4.30
372 1522 4.488790 CTGGCTTGACCTGCAGTT 57.511 55.556 13.81 0.00 40.22 3.16
377 1527 0.747283 GATCCTGCTGGCTTGACCTG 60.747 60.000 4.42 0.00 40.22 4.00
378 1528 1.606531 GATCCTGCTGGCTTGACCT 59.393 57.895 4.42 0.00 40.22 3.85
379 1529 1.452833 GGATCCTGCTGGCTTGACC 60.453 63.158 3.84 0.36 39.84 4.02
380 1530 1.452833 GGGATCCTGCTGGCTTGAC 60.453 63.158 12.58 0.00 0.00 3.18
381 1531 2.683465 GGGGATCCTGCTGGCTTGA 61.683 63.158 12.58 0.00 0.00 3.02
382 1532 2.123982 GGGGATCCTGCTGGCTTG 60.124 66.667 12.58 0.00 0.00 4.01
383 1533 2.286732 AGGGGATCCTGCTGGCTT 60.287 61.111 12.58 0.00 42.98 4.35
384 1534 2.771762 GAGGGGATCCTGCTGGCT 60.772 66.667 12.58 0.00 45.05 4.75
385 1535 3.883549 GGAGGGGATCCTGCTGGC 61.884 72.222 12.58 0.00 46.56 4.85
393 1543 1.433121 ATGCTCTTCTGGAGGGGATC 58.567 55.000 0.00 0.00 42.08 3.36
394 1544 1.904440 AATGCTCTTCTGGAGGGGAT 58.096 50.000 0.00 0.00 38.78 3.85
395 1545 1.283029 CAAATGCTCTTCTGGAGGGGA 59.717 52.381 0.00 0.00 42.08 4.81
396 1546 1.283029 TCAAATGCTCTTCTGGAGGGG 59.717 52.381 0.00 0.00 42.08 4.79
419 1569 0.460987 GAGAAGGGGATGCACTCACG 60.461 60.000 0.00 0.00 0.00 4.35
420 1570 0.908198 AGAGAAGGGGATGCACTCAC 59.092 55.000 0.00 0.00 0.00 3.51
421 1571 1.556911 GAAGAGAAGGGGATGCACTCA 59.443 52.381 0.00 0.00 0.00 3.41
422 1572 1.836802 AGAAGAGAAGGGGATGCACTC 59.163 52.381 0.00 0.00 0.00 3.51
426 1761 3.199727 AGAAGAAGAAGAGAAGGGGATGC 59.800 47.826 0.00 0.00 0.00 3.91
427 1762 5.189539 AGAAGAAGAAGAAGAGAAGGGGATG 59.810 44.000 0.00 0.00 0.00 3.51
428 1763 5.349690 AGAAGAAGAAGAAGAGAAGGGGAT 58.650 41.667 0.00 0.00 0.00 3.85
429 1764 4.757692 AGAAGAAGAAGAAGAGAAGGGGA 58.242 43.478 0.00 0.00 0.00 4.81
433 1768 7.538678 CGAGAAGAAGAAGAAGAAGAAGAGAAG 59.461 40.741 0.00 0.00 0.00 2.85
434 1769 7.229707 TCGAGAAGAAGAAGAAGAAGAAGAGAA 59.770 37.037 0.00 0.00 0.00 2.87
441 1776 7.881643 TCAAATCGAGAAGAAGAAGAAGAAG 57.118 36.000 0.00 0.00 0.00 2.85
442 1777 7.875041 ACATCAAATCGAGAAGAAGAAGAAGAA 59.125 33.333 0.00 0.00 0.00 2.52
446 1781 6.367149 CACACATCAAATCGAGAAGAAGAAGA 59.633 38.462 0.00 0.00 0.00 2.87
447 1782 6.532311 CACACATCAAATCGAGAAGAAGAAG 58.468 40.000 0.00 0.00 0.00 2.85
448 1783 5.106948 GCACACATCAAATCGAGAAGAAGAA 60.107 40.000 0.00 0.00 0.00 2.52
452 1787 2.667969 CGCACACATCAAATCGAGAAGA 59.332 45.455 0.00 0.00 0.00 2.87
454 1789 2.157474 CACGCACACATCAAATCGAGAA 59.843 45.455 0.00 0.00 0.00 2.87
456 1791 1.787989 GCACGCACACATCAAATCGAG 60.788 52.381 0.00 0.00 0.00 4.04
457 1792 0.165727 GCACGCACACATCAAATCGA 59.834 50.000 0.00 0.00 0.00 3.59
459 1794 0.110238 ACGCACGCACACATCAAATC 60.110 50.000 0.00 0.00 0.00 2.17
462 1797 2.630872 CACGCACGCACACATCAA 59.369 55.556 0.00 0.00 0.00 2.57
463 1798 4.011654 GCACGCACGCACACATCA 62.012 61.111 0.00 0.00 0.00 3.07
464 1799 3.716006 AGCACGCACGCACACATC 61.716 61.111 0.00 0.00 0.00 3.06
465 1800 4.016629 CAGCACGCACGCACACAT 62.017 61.111 0.00 0.00 0.00 3.21
467 1802 4.236416 AACAGCACGCACGCACAC 62.236 61.111 0.00 0.00 0.00 3.82
468 1803 4.235025 CAACAGCACGCACGCACA 62.235 61.111 0.00 0.00 0.00 4.57
469 1804 4.236416 ACAACAGCACGCACGCAC 62.236 61.111 0.00 0.00 0.00 5.34
470 1805 4.235025 CACAACAGCACGCACGCA 62.235 61.111 0.00 0.00 0.00 5.24
471 1806 4.236416 ACACAACAGCACGCACGC 62.236 61.111 0.00 0.00 0.00 5.34
473 1808 2.651863 GCACACAACAGCACGCAC 60.652 61.111 0.00 0.00 0.00 5.34
474 1809 3.110868 CTGCACACAACAGCACGCA 62.111 57.895 0.00 0.00 36.62 5.24
475 1810 2.352686 CTGCACACAACAGCACGC 60.353 61.111 0.00 0.00 36.62 5.34
476 1811 2.328989 CCTGCACACAACAGCACG 59.671 61.111 0.00 0.00 36.62 5.34
477 1812 2.026590 GCCTGCACACAACAGCAC 59.973 61.111 0.00 0.00 36.62 4.40
478 1813 3.218470 GGCCTGCACACAACAGCA 61.218 61.111 0.00 0.00 39.25 4.41
479 1814 3.982241 GGGCCTGCACACAACAGC 61.982 66.667 0.84 0.00 33.65 4.40
481 1816 4.182433 TCGGGCCTGCACACAACA 62.182 61.111 6.73 0.00 0.00 3.33
482 1817 3.660111 GTCGGGCCTGCACACAAC 61.660 66.667 6.73 0.00 0.00 3.32
483 1818 3.825160 GAGTCGGGCCTGCACACAA 62.825 63.158 6.73 0.00 0.00 3.33
485 1820 3.612247 ATGAGTCGGGCCTGCACAC 62.612 63.158 6.73 0.00 0.00 3.82
487 1822 2.512515 GATGAGTCGGGCCTGCAC 60.513 66.667 6.73 6.37 0.00 4.57
488 1823 2.685017 AGATGAGTCGGGCCTGCA 60.685 61.111 6.73 0.00 0.00 4.41
489 1824 2.107953 GAGATGAGTCGGGCCTGC 59.892 66.667 6.73 1.77 0.00 4.85
490 1825 1.440893 CAGAGATGAGTCGGGCCTG 59.559 63.158 4.71 4.71 0.00 4.85
491 1826 2.430610 GCAGAGATGAGTCGGGCCT 61.431 63.158 0.84 0.00 0.00 5.19
495 1830 1.638133 CACAAGCAGAGATGAGTCGG 58.362 55.000 0.00 0.00 0.00 4.79
496 1831 0.997932 GCACAAGCAGAGATGAGTCG 59.002 55.000 0.00 0.00 41.58 4.18
510 1845 1.748493 GACCTTCCTTGTTGTGCACAA 59.252 47.619 27.96 27.96 43.55 3.33
511 1846 1.340502 TGACCTTCCTTGTTGTGCACA 60.341 47.619 17.42 17.42 0.00 4.57
512 1847 1.388547 TGACCTTCCTTGTTGTGCAC 58.611 50.000 10.75 10.75 0.00 4.57
513 1848 1.955778 CATGACCTTCCTTGTTGTGCA 59.044 47.619 0.00 0.00 0.00 4.57
514 1849 1.270550 CCATGACCTTCCTTGTTGTGC 59.729 52.381 0.00 0.00 0.00 4.57
516 1851 2.711009 TCTCCATGACCTTCCTTGTTGT 59.289 45.455 0.00 0.00 0.00 3.32
518 1853 2.289694 CGTCTCCATGACCTTCCTTGTT 60.290 50.000 0.00 0.00 42.49 2.83
519 1854 1.276421 CGTCTCCATGACCTTCCTTGT 59.724 52.381 0.00 0.00 42.49 3.16
522 1857 1.276421 CAACGTCTCCATGACCTTCCT 59.724 52.381 0.00 0.00 42.49 3.36
523 1858 1.726853 CAACGTCTCCATGACCTTCC 58.273 55.000 0.00 0.00 42.49 3.46
524 1859 1.079503 GCAACGTCTCCATGACCTTC 58.920 55.000 0.00 0.00 42.49 3.46
525 1860 0.687354 AGCAACGTCTCCATGACCTT 59.313 50.000 0.00 0.00 42.49 3.50
526 1861 0.247736 GAGCAACGTCTCCATGACCT 59.752 55.000 0.00 0.00 42.49 3.85
527 1862 2.755929 GAGCAACGTCTCCATGACC 58.244 57.895 0.00 0.00 42.49 4.02
540 2065 1.065782 TGCGCTAAACATAGGGAGCAA 60.066 47.619 9.73 0.00 34.49 3.91
541 2066 0.539518 TGCGCTAAACATAGGGAGCA 59.460 50.000 9.73 0.00 34.49 4.26
542 2067 1.884235 ATGCGCTAAACATAGGGAGC 58.116 50.000 9.73 0.00 32.46 4.70
543 2068 4.521130 TCTATGCGCTAAACATAGGGAG 57.479 45.455 9.73 0.00 44.66 4.30
544 2069 4.948341 TTCTATGCGCTAAACATAGGGA 57.052 40.909 9.73 0.00 44.66 4.20
545 2070 6.204688 TGATTTTCTATGCGCTAAACATAGGG 59.795 38.462 9.73 0.00 44.66 3.53
546 2071 7.189693 TGATTTTCTATGCGCTAAACATAGG 57.810 36.000 9.73 0.00 44.66 2.57
547 2072 7.800380 CCTTGATTTTCTATGCGCTAAACATAG 59.200 37.037 9.73 7.18 45.51 2.23
548 2073 7.639039 CCTTGATTTTCTATGCGCTAAACATA 58.361 34.615 9.73 0.00 0.00 2.29
549 2074 6.498304 CCTTGATTTTCTATGCGCTAAACAT 58.502 36.000 9.73 0.00 0.00 2.71
550 2075 5.676079 GCCTTGATTTTCTATGCGCTAAACA 60.676 40.000 9.73 0.00 0.00 2.83
551 2076 4.735338 GCCTTGATTTTCTATGCGCTAAAC 59.265 41.667 9.73 0.00 0.00 2.01
552 2077 4.202010 GGCCTTGATTTTCTATGCGCTAAA 60.202 41.667 9.73 1.12 0.00 1.85
553 2078 3.315191 GGCCTTGATTTTCTATGCGCTAA 59.685 43.478 9.73 0.00 0.00 3.09
554 2079 2.878406 GGCCTTGATTTTCTATGCGCTA 59.122 45.455 9.73 0.00 0.00 4.26
555 2080 1.678101 GGCCTTGATTTTCTATGCGCT 59.322 47.619 9.73 0.00 0.00 5.92
556 2081 1.405105 TGGCCTTGATTTTCTATGCGC 59.595 47.619 3.32 0.00 0.00 6.09
557 2082 3.489738 CCTTGGCCTTGATTTTCTATGCG 60.490 47.826 3.32 0.00 0.00 4.73
558 2083 3.739209 GCCTTGGCCTTGATTTTCTATGC 60.739 47.826 3.32 0.00 0.00 3.14
559 2084 3.489738 CGCCTTGGCCTTGATTTTCTATG 60.490 47.826 3.32 0.00 0.00 2.23
560 2085 2.689983 CGCCTTGGCCTTGATTTTCTAT 59.310 45.455 3.32 0.00 0.00 1.98
561 2086 2.091541 CGCCTTGGCCTTGATTTTCTA 58.908 47.619 3.32 0.00 0.00 2.10
562 2087 0.890683 CGCCTTGGCCTTGATTTTCT 59.109 50.000 3.32 0.00 0.00 2.52
563 2088 0.108662 CCGCCTTGGCCTTGATTTTC 60.109 55.000 3.32 0.00 0.00 2.29
564 2089 1.974543 CCGCCTTGGCCTTGATTTT 59.025 52.632 3.32 0.00 0.00 1.82
565 2090 3.698765 CCGCCTTGGCCTTGATTT 58.301 55.556 3.32 0.00 0.00 2.17
574 2099 2.182537 GCAAATGAGCCGCCTTGG 59.817 61.111 0.00 0.00 42.50 3.61
575 2100 2.202518 CGCAAATGAGCCGCCTTG 60.203 61.111 0.00 0.00 0.00 3.61
576 2101 2.672996 ACGCAAATGAGCCGCCTT 60.673 55.556 0.00 0.00 0.00 4.35
577 2102 2.796483 TACACGCAAATGAGCCGCCT 62.796 55.000 0.00 0.00 0.00 5.52
578 2103 1.714899 ATACACGCAAATGAGCCGCC 61.715 55.000 0.00 0.00 0.00 6.13
579 2104 0.589729 CATACACGCAAATGAGCCGC 60.590 55.000 0.00 0.00 0.00 6.53
580 2105 0.726827 ACATACACGCAAATGAGCCG 59.273 50.000 0.00 0.00 0.00 5.52
581 2106 2.916716 CAAACATACACGCAAATGAGCC 59.083 45.455 0.00 0.00 0.00 4.70
582 2107 3.361644 CACAAACATACACGCAAATGAGC 59.638 43.478 0.00 0.00 0.00 4.26
583 2108 3.913763 CCACAAACATACACGCAAATGAG 59.086 43.478 0.00 0.00 0.00 2.90
584 2109 3.855154 GCCACAAACATACACGCAAATGA 60.855 43.478 0.00 0.00 0.00 2.57
585 2110 2.408032 GCCACAAACATACACGCAAATG 59.592 45.455 0.00 0.00 0.00 2.32
586 2111 2.295909 AGCCACAAACATACACGCAAAT 59.704 40.909 0.00 0.00 0.00 2.32
587 2112 1.678627 AGCCACAAACATACACGCAAA 59.321 42.857 0.00 0.00 0.00 3.68
588 2113 1.001924 CAGCCACAAACATACACGCAA 60.002 47.619 0.00 0.00 0.00 4.85
589 2114 0.590682 CAGCCACAAACATACACGCA 59.409 50.000 0.00 0.00 0.00 5.24
590 2115 0.109781 CCAGCCACAAACATACACGC 60.110 55.000 0.00 0.00 0.00 5.34
591 2116 0.109781 GCCAGCCACAAACATACACG 60.110 55.000 0.00 0.00 0.00 4.49
592 2117 0.958091 TGCCAGCCACAAACATACAC 59.042 50.000 0.00 0.00 0.00 2.90
593 2118 0.958091 GTGCCAGCCACAAACATACA 59.042 50.000 0.00 0.00 44.06 2.29
594 2119 3.792716 GTGCCAGCCACAAACATAC 57.207 52.632 0.00 0.00 44.06 2.39
602 2127 2.964978 GGATTGTGTGCCAGCCAC 59.035 61.111 4.82 4.82 44.90 5.01
612 2137 8.532977 AAAATTTGAAGGATTAACGGATTGTG 57.467 30.769 0.00 0.00 0.00 3.33
613 2138 7.540745 CGAAAATTTGAAGGATTAACGGATTGT 59.459 33.333 0.00 0.00 0.00 2.71
614 2139 7.462724 GCGAAAATTTGAAGGATTAACGGATTG 60.463 37.037 0.00 0.00 0.00 2.67
615 2140 6.530181 GCGAAAATTTGAAGGATTAACGGATT 59.470 34.615 0.00 0.00 0.00 3.01
616 2141 6.033966 GCGAAAATTTGAAGGATTAACGGAT 58.966 36.000 0.00 0.00 0.00 4.18
618 2143 5.060446 GTGCGAAAATTTGAAGGATTAACGG 59.940 40.000 0.00 0.00 0.00 4.44
619 2144 5.627367 TGTGCGAAAATTTGAAGGATTAACG 59.373 36.000 0.00 0.00 0.00 3.18
620 2145 6.861055 TCTGTGCGAAAATTTGAAGGATTAAC 59.139 34.615 0.00 0.00 0.00 2.01
622 2147 6.567687 TCTGTGCGAAAATTTGAAGGATTA 57.432 33.333 0.00 0.00 0.00 1.75
623 2148 5.452078 TCTGTGCGAAAATTTGAAGGATT 57.548 34.783 0.00 0.00 0.00 3.01
624 2149 5.452078 TTCTGTGCGAAAATTTGAAGGAT 57.548 34.783 0.00 0.00 0.00 3.24
629 2154 3.963665 CACCTTCTGTGCGAAAATTTGA 58.036 40.909 0.00 0.00 38.34 2.69
648 2186 4.207165 TGCAAAGAGGATAAATAGGGCAC 58.793 43.478 0.00 0.00 0.00 5.01
688 2226 7.672983 TTTGCCAACACAAACAATCTAAAAA 57.327 28.000 0.00 0.00 34.68 1.94
689 2227 7.201679 CCATTTGCCAACACAAACAATCTAAAA 60.202 33.333 0.00 0.00 42.01 1.52
690 2228 6.259608 CCATTTGCCAACACAAACAATCTAAA 59.740 34.615 0.00 0.00 42.01 1.85
691 2229 5.757320 CCATTTGCCAACACAAACAATCTAA 59.243 36.000 0.00 0.00 42.01 2.10
692 2230 5.069648 TCCATTTGCCAACACAAACAATCTA 59.930 36.000 0.00 0.00 42.01 1.98
693 2231 4.128643 CCATTTGCCAACACAAACAATCT 58.871 39.130 0.00 0.00 42.01 2.40
694 2232 4.125703 TCCATTTGCCAACACAAACAATC 58.874 39.130 0.00 0.00 42.01 2.67
695 2233 4.148128 TCCATTTGCCAACACAAACAAT 57.852 36.364 0.00 0.00 42.01 2.71
696 2234 3.616956 TCCATTTGCCAACACAAACAA 57.383 38.095 0.00 0.00 42.01 2.83
697 2235 3.616956 TTCCATTTGCCAACACAAACA 57.383 38.095 0.00 0.00 42.01 2.83
698 2236 4.201901 CCTTTTCCATTTGCCAACACAAAC 60.202 41.667 0.00 0.00 42.01 2.93
699 2237 3.944015 CCTTTTCCATTTGCCAACACAAA 59.056 39.130 0.00 0.00 43.27 2.83
700 2238 3.198635 TCCTTTTCCATTTGCCAACACAA 59.801 39.130 0.00 0.00 0.00 3.33
702 2240 3.130633 GTCCTTTTCCATTTGCCAACAC 58.869 45.455 0.00 0.00 0.00 3.32
704 2242 3.653344 GAGTCCTTTTCCATTTGCCAAC 58.347 45.455 0.00 0.00 0.00 3.77
705 2243 2.295909 CGAGTCCTTTTCCATTTGCCAA 59.704 45.455 0.00 0.00 0.00 4.52
707 2245 1.202348 CCGAGTCCTTTTCCATTTGCC 59.798 52.381 0.00 0.00 0.00 4.52
708 2246 2.159382 TCCGAGTCCTTTTCCATTTGC 58.841 47.619 0.00 0.00 0.00 3.68
709 2247 4.142381 GGATTCCGAGTCCTTTTCCATTTG 60.142 45.833 2.68 0.00 32.85 2.32
710 2248 4.017126 GGATTCCGAGTCCTTTTCCATTT 58.983 43.478 2.68 0.00 32.85 2.32
712 2250 2.846827 AGGATTCCGAGTCCTTTTCCAT 59.153 45.455 6.63 0.00 43.52 3.41
720 2709 4.143986 AGAAATCAAGGATTCCGAGTCC 57.856 45.455 1.61 1.61 30.29 3.85
721 2710 5.751028 CAGTAGAAATCAAGGATTCCGAGTC 59.249 44.000 0.00 0.00 30.29 3.36
723 2712 5.907207 TCAGTAGAAATCAAGGATTCCGAG 58.093 41.667 0.00 0.00 30.29 4.63
726 2715 8.960591 TCAAAATCAGTAGAAATCAAGGATTCC 58.039 33.333 0.00 0.00 30.29 3.01
748 2737 9.965824 GGAACTAATTTGAGACTGAAATTCAAA 57.034 29.630 14.79 2.31 42.83 2.69
753 2742 9.660180 GTAGAGGAACTAATTTGAGACTGAAAT 57.340 33.333 0.00 0.00 41.55 2.17
755 2744 7.039923 ACGTAGAGGAACTAATTTGAGACTGAA 60.040 37.037 0.00 0.00 41.55 3.02
756 2745 6.433404 ACGTAGAGGAACTAATTTGAGACTGA 59.567 38.462 0.00 0.00 41.55 3.41
757 2746 6.622549 ACGTAGAGGAACTAATTTGAGACTG 58.377 40.000 0.00 0.00 41.55 3.51
758 2747 6.127675 GGACGTAGAGGAACTAATTTGAGACT 60.128 42.308 0.00 0.00 41.55 3.24
759 2748 6.035217 GGACGTAGAGGAACTAATTTGAGAC 58.965 44.000 0.00 0.00 41.55 3.36
760 2749 5.163683 CGGACGTAGAGGAACTAATTTGAGA 60.164 44.000 0.00 0.00 41.55 3.27
761 2750 5.035443 CGGACGTAGAGGAACTAATTTGAG 58.965 45.833 0.00 0.00 41.55 3.02
763 2752 4.990257 TCGGACGTAGAGGAACTAATTTG 58.010 43.478 0.00 0.00 41.55 2.32
765 2754 4.277921 GGATCGGACGTAGAGGAACTAATT 59.722 45.833 0.00 0.00 41.55 1.40
768 2757 2.804572 CGGATCGGACGTAGAGGAACTA 60.805 54.545 0.00 0.00 41.55 2.24
770 2759 0.307146 CGGATCGGACGTAGAGGAAC 59.693 60.000 0.00 0.00 0.00 3.62
771 2760 2.699073 CGGATCGGACGTAGAGGAA 58.301 57.895 0.00 0.00 0.00 3.36
772 2761 4.451241 CGGATCGGACGTAGAGGA 57.549 61.111 0.00 0.00 0.00 3.71
852 2841 2.607811 TGGCGAGGACCATGAGATT 58.392 52.632 0.00 0.00 33.75 2.40
880 2869 2.606213 TCATGGCGACCCAGACCA 60.606 61.111 0.00 0.00 46.24 4.02
968 2957 2.946990 AGGGTGAAAACTACAAACGGTG 59.053 45.455 0.00 0.00 0.00 4.94
971 2960 2.222445 CCGAGGGTGAAAACTACAAACG 59.778 50.000 0.00 0.00 0.00 3.60
1022 3011 7.001073 AGACCTTGCTATTGAAGAAAGTTCTT 58.999 34.615 6.00 6.00 39.08 2.52
1243 3244 1.331214 CACCATTTCACAAGCCCACT 58.669 50.000 0.00 0.00 0.00 4.00
1249 3250 5.720371 TTTCCCATACACCATTTCACAAG 57.280 39.130 0.00 0.00 0.00 3.16
1296 3297 8.321650 TGCATTTTAACCAATTCAATTTCTCC 57.678 30.769 0.00 0.00 0.00 3.71
1421 3422 9.702494 CACTGCTATGATTATAACAAGATCAGA 57.298 33.333 0.00 0.00 33.70 3.27
1422 3423 8.933807 CCACTGCTATGATTATAACAAGATCAG 58.066 37.037 0.00 0.00 33.70 2.90
1500 3528 8.747538 ATAGTTAAGGATTGGTGTTAATGGAC 57.252 34.615 0.00 0.00 0.00 4.02
1572 3602 6.714810 TGCTTTGAACTGACCTACAACATAAT 59.285 34.615 0.00 0.00 0.00 1.28
1573 3603 6.058833 TGCTTTGAACTGACCTACAACATAA 58.941 36.000 0.00 0.00 0.00 1.90
1575 3605 4.460263 TGCTTTGAACTGACCTACAACAT 58.540 39.130 0.00 0.00 0.00 2.71
1577 3607 4.127171 TCTGCTTTGAACTGACCTACAAC 58.873 43.478 0.00 0.00 0.00 3.32
1578 3608 4.415881 TCTGCTTTGAACTGACCTACAA 57.584 40.909 0.00 0.00 0.00 2.41
1579 3609 4.380531 CTTCTGCTTTGAACTGACCTACA 58.619 43.478 0.00 0.00 0.00 2.74
1580 3610 3.748568 CCTTCTGCTTTGAACTGACCTAC 59.251 47.826 0.00 0.00 0.00 3.18
1791 3902 7.728847 AATGGCCAAAAGACTTGATTAAAAC 57.271 32.000 10.96 0.00 0.00 2.43
2135 4257 1.070289 GGTTCCACTTCTCGACAAGGT 59.930 52.381 5.40 0.00 0.00 3.50
2142 4264 0.388649 CCGAGTGGTTCCACTTCTCG 60.389 60.000 22.93 20.48 45.99 4.04
2248 4370 7.578189 GCTTAACCAACCTTATTTTAGAACCCC 60.578 40.741 0.00 0.00 0.00 4.95
2822 6461 4.065088 GCACTACATTGTCTCCTTGAACA 58.935 43.478 0.00 0.00 0.00 3.18
2823 6462 3.123621 CGCACTACATTGTCTCCTTGAAC 59.876 47.826 0.00 0.00 0.00 3.18
2908 6550 1.563410 CTTCTTGCAGGGGGAGAGAAT 59.437 52.381 0.00 0.00 0.00 2.40
2931 6574 2.025321 GTGGGGGTGTATGAGGTGAAAT 60.025 50.000 0.00 0.00 0.00 2.17
3049 6714 7.560368 ACCCACAAAATAAGTTGAATTGTTCA 58.440 30.769 0.00 0.00 38.04 3.18
3378 7094 6.457528 GCTCAGCGTTAAAAGATAGCTTGAAT 60.458 38.462 0.00 0.00 35.82 2.57
3423 7139 6.093495 CACTTATTTTGCGATGGAGGAAGTAA 59.907 38.462 0.00 0.00 0.00 2.24
3495 7470 9.486497 AACTTGACATGCATATATACAGAGAAG 57.514 33.333 0.00 0.00 0.00 2.85
3561 7536 9.545928 TTGGAATATTAATTAAGCTGGCCATAT 57.454 29.630 5.51 0.00 0.00 1.78
3798 7778 5.178797 GTGGAAAAGCTTAGCTACATCAGA 58.821 41.667 7.32 0.00 38.25 3.27
3868 7848 0.459411 GAAGAAGAGGAGCTGGCGAC 60.459 60.000 0.00 0.00 0.00 5.19
3931 7911 0.466189 AGCGGCCACCAAATATCTGG 60.466 55.000 2.24 0.00 42.68 3.86
3975 7955 8.902540 TGCTTTGAGAAAAGTATACAGAGAAA 57.097 30.769 5.50 0.00 32.52 2.52
4142 8122 1.968017 CTGTTGCATGAGTGGCCGT 60.968 57.895 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.