Multiple sequence alignment - TraesCS4B01G349100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G349100 chr4B 100.000 5418 0 0 1 5418 642450526 642455943 0.000000e+00 10006
1 TraesCS4B01G349100 chr4D 86.821 5046 342 138 475 5377 499496995 499501860 0.000000e+00 5336
2 TraesCS4B01G349100 chr5A 86.423 4412 306 121 1064 5373 680498237 680502457 0.000000e+00 4558
3 TraesCS4B01G349100 chr5A 77.716 359 27 20 604 947 680497598 680497918 2.590000e-38 171
4 TraesCS4B01G349100 chr5A 98.361 61 1 0 994 1054 680497934 680497994 2.060000e-19 108
5 TraesCS4B01G349100 chr4A 94.239 486 25 3 1 485 669839138 669838655 0.000000e+00 739
6 TraesCS4B01G349100 chr1B 94.572 479 22 3 1 476 664950886 664950409 0.000000e+00 737
7 TraesCS4B01G349100 chr1B 93.542 480 21 7 1 474 99631227 99630752 0.000000e+00 706
8 TraesCS4B01G349100 chr6B 94.375 480 21 3 1 474 672136361 672136840 0.000000e+00 732
9 TraesCS4B01G349100 chr6B 93.608 485 25 6 1 481 719898698 719898216 0.000000e+00 719
10 TraesCS4B01G349100 chr2B 93.496 492 22 7 1 488 731338289 731337804 0.000000e+00 723
11 TraesCS4B01G349100 chr2B 93.946 479 26 2 1 476 184787865 184787387 0.000000e+00 721
12 TraesCS4B01G349100 chr2B 93.347 481 24 6 1 478 42269371 42269846 0.000000e+00 704
13 TraesCS4B01G349100 chr7B 93.416 486 24 6 1 483 381867833 381868313 0.000000e+00 713


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G349100 chr4B 642450526 642455943 5417 False 10006.000000 10006 100.000 1 5418 1 chr4B.!!$F1 5417
1 TraesCS4B01G349100 chr4D 499496995 499501860 4865 False 5336.000000 5336 86.821 475 5377 1 chr4D.!!$F1 4902
2 TraesCS4B01G349100 chr5A 680497598 680502457 4859 False 1612.333333 4558 87.500 604 5373 3 chr5A.!!$F1 4769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.025898 GACGACGACGACGATGATGA 59.974 55.000 25.15 0.0 42.66 2.92 F
149 150 0.025898 GACGACGATGATGACGACGA 59.974 55.000 16.55 0.0 46.85 4.20 F
196 197 0.105039 CCTCCTCGGCATGTAGAACC 59.895 60.000 0.00 0.0 0.00 3.62 F
346 347 0.109039 AGTTGTTTTTGCGCCGTGTT 60.109 45.000 4.18 0.0 0.00 3.32 F
1567 1892 0.109132 CCCTGCATTCTTGGCGTTTC 60.109 55.000 0.00 0.0 0.00 2.78 F
2483 2841 0.179029 AACACCGGAACCTTGACTGG 60.179 55.000 9.46 0.0 38.40 4.00 F
2764 3129 1.857837 CGCGGCAAATTTGAAGTTGTT 59.142 42.857 22.31 0.0 36.45 2.83 F
3400 3765 0.179097 GCAAGGAAGAGAGGGCTACG 60.179 60.000 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1852 0.032117 GGATTTGGGGGAAGAAGGGG 60.032 60.000 0.00 0.00 0.00 4.79 R
1548 1873 0.109132 GAAACGCCAAGAATGCAGGG 60.109 55.000 0.00 0.00 0.00 4.45 R
1743 2086 0.444651 TTTAGAAAATCGTGCGCCCG 59.555 50.000 5.73 5.73 0.00 6.13 R
2280 2638 0.957395 ACGGCGTCGGTCTAGAGAAA 60.957 55.000 16.39 0.00 41.39 2.52 R
2812 3177 0.030638 CCTTTTCGCACCACCAACTG 59.969 55.000 0.00 0.00 0.00 3.16 R
3394 3759 0.109504 TTGCGAAATTTGCCGTAGCC 60.110 50.000 2.33 0.00 38.69 3.93 R
4399 4781 0.182061 ATCATAGGCACCAGCACCAG 59.818 55.000 0.00 0.00 44.61 4.00 R
5092 5545 1.079543 CTCCATCATCCCGATCGGC 60.080 63.158 29.12 0.00 29.21 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.733960 TCGTGGTCCTCGACAGCG 61.734 66.667 11.90 0.00 33.68 5.18
41 42 3.733960 CGTGGTCCTCGACAGCGA 61.734 66.667 7.59 0.00 45.71 4.93
42 43 2.126424 GTGGTCCTCGACAGCGAC 60.126 66.667 0.00 0.00 42.51 5.19
43 44 3.733960 TGGTCCTCGACAGCGACG 61.734 66.667 0.00 0.00 42.51 5.12
44 45 3.429141 GGTCCTCGACAGCGACGA 61.429 66.667 0.00 0.00 42.51 4.20
45 46 2.202324 GTCCTCGACAGCGACGAC 60.202 66.667 0.00 0.00 42.51 4.34
46 47 3.785499 TCCTCGACAGCGACGACG 61.785 66.667 2.12 2.12 42.51 5.12
47 48 3.785499 CCTCGACAGCGACGACGA 61.785 66.667 12.29 2.97 42.51 4.20
48 49 2.571096 CTCGACAGCGACGACGAC 60.571 66.667 12.29 2.46 42.51 4.34
49 50 4.419957 TCGACAGCGACGACGACG 62.420 66.667 15.13 15.13 42.51 5.12
50 51 4.419957 CGACAGCGACGACGACGA 62.420 66.667 22.94 0.00 42.66 4.20
51 52 2.864248 GACAGCGACGACGACGAC 60.864 66.667 22.94 13.66 42.66 4.34
98 99 3.809013 CCAACCGGGGGAGGGATG 61.809 72.222 6.32 0.00 35.02 3.51
99 100 4.506255 CAACCGGGGGAGGGATGC 62.506 72.222 6.32 0.00 35.02 3.91
104 105 4.201122 GGGGGAGGGATGCAGCAG 62.201 72.222 3.51 0.00 0.00 4.24
105 106 4.201122 GGGGAGGGATGCAGCAGG 62.201 72.222 3.51 0.00 0.00 4.85
106 107 4.201122 GGGAGGGATGCAGCAGGG 62.201 72.222 3.51 0.00 0.00 4.45
107 108 3.092511 GGAGGGATGCAGCAGGGA 61.093 66.667 3.51 0.00 0.00 4.20
108 109 2.191641 GAGGGATGCAGCAGGGAC 59.808 66.667 3.51 0.00 0.00 4.46
109 110 3.746949 GAGGGATGCAGCAGGGACG 62.747 68.421 3.51 0.00 0.00 4.79
110 111 4.864334 GGGATGCAGCAGGGACGG 62.864 72.222 3.51 0.00 0.00 4.79
141 142 4.970174 GACGACGACGACGATGAT 57.030 55.556 25.15 3.47 42.66 2.45
142 143 2.471065 GACGACGACGACGATGATG 58.529 57.895 25.15 1.27 42.66 3.07
143 144 0.025898 GACGACGACGACGATGATGA 59.974 55.000 25.15 0.00 42.66 2.92
144 145 0.247576 ACGACGACGACGATGATGAC 60.248 55.000 25.15 0.00 42.66 3.06
145 146 1.247261 CGACGACGACGATGATGACG 61.247 60.000 15.32 4.36 42.66 4.35
146 147 0.025898 GACGACGACGATGATGACGA 59.974 55.000 15.32 0.00 42.66 4.20
147 148 0.247576 ACGACGACGATGATGACGAC 60.248 55.000 15.32 0.00 42.66 4.34
149 150 0.025898 GACGACGATGATGACGACGA 59.974 55.000 16.55 0.00 46.85 4.20
150 151 0.247576 ACGACGATGATGACGACGAC 60.248 55.000 16.55 0.00 46.85 4.34
151 152 1.247261 CGACGATGATGACGACGACG 61.247 60.000 5.58 5.58 46.85 5.12
152 153 0.924363 GACGATGATGACGACGACGG 60.924 60.000 12.58 0.00 44.46 4.79
161 162 3.792047 CGACGACGGCGGTGACTA 61.792 66.667 18.49 0.00 43.17 2.59
162 163 2.202401 GACGACGGCGGTGACTAC 60.202 66.667 18.49 0.00 43.17 2.73
163 164 2.969806 GACGACGGCGGTGACTACA 61.970 63.158 18.49 0.00 43.17 2.74
164 165 2.503375 CGACGGCGGTGACTACAC 60.503 66.667 13.24 0.00 45.27 2.90
165 166 2.503375 GACGGCGGTGACTACACG 60.503 66.667 13.24 0.00 46.77 4.49
166 167 4.712425 ACGGCGGTGACTACACGC 62.712 66.667 13.24 0.00 46.77 5.34
169 170 4.712425 GCGGTGACTACACGCGGT 62.712 66.667 12.47 8.38 46.77 5.68
170 171 2.049802 CGGTGACTACACGCGGTT 60.050 61.111 12.47 0.00 46.77 4.44
171 172 2.084681 CGGTGACTACACGCGGTTC 61.085 63.158 12.47 1.85 46.77 3.62
172 173 1.288127 GGTGACTACACGCGGTTCT 59.712 57.895 12.47 0.00 46.77 3.01
173 174 0.523072 GGTGACTACACGCGGTTCTA 59.477 55.000 12.47 0.00 46.77 2.10
174 175 1.611043 GTGACTACACGCGGTTCTAC 58.389 55.000 12.47 0.00 37.28 2.59
175 176 0.523072 TGACTACACGCGGTTCTACC 59.477 55.000 12.47 0.00 34.05 3.18
184 185 2.806237 GGTTCTACCGCCTCCTCG 59.194 66.667 0.00 0.00 0.00 4.63
195 196 3.669354 CCTCCTCGGCATGTAGAAC 57.331 57.895 0.00 0.00 0.00 3.01
196 197 0.105039 CCTCCTCGGCATGTAGAACC 59.895 60.000 0.00 0.00 0.00 3.62
198 199 1.883084 CCTCGGCATGTAGAACCGC 60.883 63.158 4.05 0.00 46.49 5.68
199 200 1.153647 CTCGGCATGTAGAACCGCA 60.154 57.895 4.05 0.00 46.49 5.69
200 201 0.530650 CTCGGCATGTAGAACCGCAT 60.531 55.000 4.05 0.00 46.49 4.73
201 202 0.809636 TCGGCATGTAGAACCGCATG 60.810 55.000 4.05 0.00 46.49 4.06
202 203 1.775039 CGGCATGTAGAACCGCATGG 61.775 60.000 6.65 0.00 41.82 3.66
203 204 1.447317 GGCATGTAGAACCGCATGGG 61.447 60.000 2.06 2.06 41.82 4.00
204 205 2.024918 CATGTAGAACCGCATGGGC 58.975 57.895 3.80 0.00 40.62 5.36
262 263 3.464494 GGGTAGCCCGCGGTAGTT 61.464 66.667 26.12 10.37 32.13 2.24
263 264 2.580815 GGTAGCCCGCGGTAGTTT 59.419 61.111 26.12 6.86 0.00 2.66
264 265 1.078918 GGTAGCCCGCGGTAGTTTT 60.079 57.895 26.12 4.98 0.00 2.43
265 266 0.674581 GGTAGCCCGCGGTAGTTTTT 60.675 55.000 26.12 3.49 0.00 1.94
306 307 8.895932 ATATGTTAAAGTTTGAATGAACTCGC 57.104 30.769 0.00 0.00 38.86 5.03
307 308 5.516090 TGTTAAAGTTTGAATGAACTCGCC 58.484 37.500 0.00 0.00 38.86 5.54
308 309 2.969443 AAGTTTGAATGAACTCGCCG 57.031 45.000 0.00 0.00 38.86 6.46
309 310 2.163818 AGTTTGAATGAACTCGCCGA 57.836 45.000 0.00 0.00 34.94 5.54
310 311 2.699954 AGTTTGAATGAACTCGCCGAT 58.300 42.857 0.00 0.00 34.94 4.18
311 312 2.416547 AGTTTGAATGAACTCGCCGATG 59.583 45.455 0.00 0.00 34.94 3.84
312 313 2.093306 TTGAATGAACTCGCCGATGT 57.907 45.000 0.00 0.00 0.00 3.06
313 314 2.093306 TGAATGAACTCGCCGATGTT 57.907 45.000 2.37 2.37 0.00 2.71
314 315 2.422597 TGAATGAACTCGCCGATGTTT 58.577 42.857 0.00 0.00 0.00 2.83
315 316 3.591023 TGAATGAACTCGCCGATGTTTA 58.409 40.909 0.00 0.00 0.00 2.01
316 317 3.369756 TGAATGAACTCGCCGATGTTTAC 59.630 43.478 0.00 0.00 0.00 2.01
317 318 1.342555 TGAACTCGCCGATGTTTACG 58.657 50.000 0.00 0.00 0.00 3.18
318 319 1.336148 TGAACTCGCCGATGTTTACGT 60.336 47.619 0.00 0.00 0.00 3.57
319 320 1.723003 GAACTCGCCGATGTTTACGTT 59.277 47.619 0.00 0.00 0.00 3.99
320 321 2.634982 ACTCGCCGATGTTTACGTTA 57.365 45.000 0.00 0.00 0.00 3.18
321 322 2.945278 ACTCGCCGATGTTTACGTTAA 58.055 42.857 0.00 0.00 0.00 2.01
322 323 3.316283 ACTCGCCGATGTTTACGTTAAA 58.684 40.909 0.00 0.00 0.00 1.52
323 324 3.928375 ACTCGCCGATGTTTACGTTAAAT 59.072 39.130 0.00 0.00 0.00 1.40
324 325 4.389687 ACTCGCCGATGTTTACGTTAAATT 59.610 37.500 0.00 0.00 0.00 1.82
325 326 5.106987 ACTCGCCGATGTTTACGTTAAATTT 60.107 36.000 0.00 0.00 0.00 1.82
326 327 5.080731 TCGCCGATGTTTACGTTAAATTTG 58.919 37.500 0.00 0.00 0.00 2.32
327 328 5.080731 CGCCGATGTTTACGTTAAATTTGA 58.919 37.500 0.00 0.00 0.00 2.69
328 329 5.224313 CGCCGATGTTTACGTTAAATTTGAG 59.776 40.000 0.00 0.00 0.00 3.02
329 330 6.081693 GCCGATGTTTACGTTAAATTTGAGT 58.918 36.000 0.00 0.88 0.00 3.41
330 331 6.579666 GCCGATGTTTACGTTAAATTTGAGTT 59.420 34.615 0.00 0.00 0.00 3.01
331 332 7.408921 GCCGATGTTTACGTTAAATTTGAGTTG 60.409 37.037 0.00 0.00 0.00 3.16
332 333 7.588488 CCGATGTTTACGTTAAATTTGAGTTGT 59.412 33.333 0.00 0.00 0.00 3.32
333 334 8.949953 CGATGTTTACGTTAAATTTGAGTTGTT 58.050 29.630 0.00 0.00 0.00 2.83
338 339 9.742552 TTTACGTTAAATTTGAGTTGTTTTTGC 57.257 25.926 0.00 0.00 0.00 3.68
339 340 6.462647 ACGTTAAATTTGAGTTGTTTTTGCG 58.537 32.000 0.00 0.00 0.00 4.85
340 341 5.388288 CGTTAAATTTGAGTTGTTTTTGCGC 59.612 36.000 0.00 0.00 0.00 6.09
341 342 3.942539 AATTTGAGTTGTTTTTGCGCC 57.057 38.095 4.18 0.00 0.00 6.53
342 343 1.272781 TTTGAGTTGTTTTTGCGCCG 58.727 45.000 4.18 0.00 0.00 6.46
343 344 0.171455 TTGAGTTGTTTTTGCGCCGT 59.829 45.000 4.18 0.00 0.00 5.68
344 345 0.524392 TGAGTTGTTTTTGCGCCGTG 60.524 50.000 4.18 0.00 0.00 4.94
345 346 0.524604 GAGTTGTTTTTGCGCCGTGT 60.525 50.000 4.18 0.00 0.00 4.49
346 347 0.109039 AGTTGTTTTTGCGCCGTGTT 60.109 45.000 4.18 0.00 0.00 3.32
347 348 0.716666 GTTGTTTTTGCGCCGTGTTT 59.283 45.000 4.18 0.00 0.00 2.83
348 349 0.716108 TTGTTTTTGCGCCGTGTTTG 59.284 45.000 4.18 0.00 0.00 2.93
349 350 0.109272 TGTTTTTGCGCCGTGTTTGA 60.109 45.000 4.18 0.00 0.00 2.69
350 351 0.296349 GTTTTTGCGCCGTGTTTGAC 59.704 50.000 4.18 0.00 0.00 3.18
351 352 0.171455 TTTTTGCGCCGTGTTTGACT 59.829 45.000 4.18 0.00 0.00 3.41
352 353 0.171455 TTTTGCGCCGTGTTTGACTT 59.829 45.000 4.18 0.00 0.00 3.01
353 354 0.171455 TTTGCGCCGTGTTTGACTTT 59.829 45.000 4.18 0.00 0.00 2.66
354 355 0.171455 TTGCGCCGTGTTTGACTTTT 59.829 45.000 4.18 0.00 0.00 2.27
355 356 0.171455 TGCGCCGTGTTTGACTTTTT 59.829 45.000 4.18 0.00 0.00 1.94
356 357 0.843872 GCGCCGTGTTTGACTTTTTC 59.156 50.000 0.00 0.00 0.00 2.29
357 358 1.109296 CGCCGTGTTTGACTTTTTCG 58.891 50.000 0.00 0.00 0.00 3.46
358 359 1.267632 CGCCGTGTTTGACTTTTTCGA 60.268 47.619 0.00 0.00 0.00 3.71
359 360 2.106418 GCCGTGTTTGACTTTTTCGAC 58.894 47.619 0.00 0.00 0.00 4.20
360 361 2.223180 GCCGTGTTTGACTTTTTCGACT 60.223 45.455 0.00 0.00 0.00 4.18
361 362 3.001533 GCCGTGTTTGACTTTTTCGACTA 59.998 43.478 0.00 0.00 0.00 2.59
362 363 4.494526 GCCGTGTTTGACTTTTTCGACTAA 60.495 41.667 0.00 0.00 0.00 2.24
363 364 4.959757 CCGTGTTTGACTTTTTCGACTAAC 59.040 41.667 0.00 0.00 0.00 2.34
364 365 4.959757 CGTGTTTGACTTTTTCGACTAACC 59.040 41.667 0.00 0.00 0.00 2.85
365 366 5.268544 GTGTTTGACTTTTTCGACTAACCC 58.731 41.667 0.00 0.00 0.00 4.11
366 367 5.065602 GTGTTTGACTTTTTCGACTAACCCT 59.934 40.000 0.00 0.00 0.00 4.34
367 368 5.065474 TGTTTGACTTTTTCGACTAACCCTG 59.935 40.000 0.00 0.00 0.00 4.45
368 369 3.735591 TGACTTTTTCGACTAACCCTGG 58.264 45.455 0.00 0.00 0.00 4.45
369 370 3.072211 GACTTTTTCGACTAACCCTGGG 58.928 50.000 12.28 12.28 0.00 4.45
370 371 1.810755 CTTTTTCGACTAACCCTGGGC 59.189 52.381 14.08 0.00 0.00 5.36
371 372 0.320946 TTTTCGACTAACCCTGGGCG 60.321 55.000 14.08 8.08 0.00 6.13
372 373 1.474332 TTTCGACTAACCCTGGGCGT 61.474 55.000 14.08 7.69 0.00 5.68
373 374 1.880819 TTCGACTAACCCTGGGCGTC 61.881 60.000 14.08 15.47 0.00 5.19
374 375 2.183555 GACTAACCCTGGGCGTCG 59.816 66.667 14.08 1.25 0.00 5.12
375 376 2.602568 ACTAACCCTGGGCGTCGT 60.603 61.111 14.08 1.95 0.00 4.34
376 377 2.125673 CTAACCCTGGGCGTCGTG 60.126 66.667 14.08 0.00 0.00 4.35
377 378 2.601067 TAACCCTGGGCGTCGTGA 60.601 61.111 14.08 0.00 0.00 4.35
378 379 2.830704 CTAACCCTGGGCGTCGTGAC 62.831 65.000 14.08 0.00 0.00 3.67
380 381 4.742201 CCCTGGGCGTCGTGACTG 62.742 72.222 0.00 0.00 0.00 3.51
381 382 3.680786 CCTGGGCGTCGTGACTGA 61.681 66.667 0.00 0.00 0.00 3.41
382 383 2.126307 CTGGGCGTCGTGACTGAG 60.126 66.667 0.00 0.00 0.00 3.35
383 384 3.633094 CTGGGCGTCGTGACTGAGG 62.633 68.421 0.00 0.00 0.00 3.86
384 385 3.371063 GGGCGTCGTGACTGAGGA 61.371 66.667 0.00 0.00 0.00 3.71
385 386 2.179517 GGCGTCGTGACTGAGGAG 59.820 66.667 0.00 0.00 0.00 3.69
386 387 2.505118 GCGTCGTGACTGAGGAGC 60.505 66.667 0.00 0.00 0.00 4.70
387 388 2.954611 CGTCGTGACTGAGGAGCA 59.045 61.111 0.00 0.00 0.00 4.26
388 389 1.508545 CGTCGTGACTGAGGAGCAT 59.491 57.895 0.00 0.00 0.00 3.79
389 390 0.524392 CGTCGTGACTGAGGAGCATC 60.524 60.000 0.00 0.00 0.00 3.91
390 391 0.528017 GTCGTGACTGAGGAGCATCA 59.472 55.000 0.00 0.00 36.25 3.07
391 392 0.528017 TCGTGACTGAGGAGCATCAC 59.472 55.000 0.00 0.00 38.46 3.06
392 393 3.041874 GTGACTGAGGAGCATCACG 57.958 57.895 0.00 0.00 36.25 4.35
393 394 1.080995 GTGACTGAGGAGCATCACGC 61.081 60.000 0.00 0.00 42.91 5.34
394 395 1.520342 GACTGAGGAGCATCACGCC 60.520 63.158 0.00 0.00 44.04 5.68
395 396 2.202987 CTGAGGAGCATCACGCCC 60.203 66.667 0.00 0.00 44.04 6.13
396 397 3.746949 CTGAGGAGCATCACGCCCC 62.747 68.421 0.00 0.00 44.04 5.80
397 398 3.785859 GAGGAGCATCACGCCCCA 61.786 66.667 0.00 0.00 42.18 4.96
398 399 3.329542 GAGGAGCATCACGCCCCAA 62.330 63.158 0.00 0.00 42.18 4.12
399 400 2.825836 GGAGCATCACGCCCCAAG 60.826 66.667 0.00 0.00 44.04 3.61
400 401 2.045926 GAGCATCACGCCCCAAGT 60.046 61.111 0.00 0.00 44.04 3.16
401 402 2.360350 AGCATCACGCCCCAAGTG 60.360 61.111 0.00 0.00 44.04 3.16
402 403 4.120331 GCATCACGCCCCAAGTGC 62.120 66.667 0.00 0.00 39.31 4.40
410 411 2.670251 CCCCAAGTGCGCGGTTTA 60.670 61.111 8.83 0.00 0.00 2.01
411 412 2.686816 CCCCAAGTGCGCGGTTTAG 61.687 63.158 8.83 0.00 0.00 1.85
412 413 2.175811 CCAAGTGCGCGGTTTAGC 59.824 61.111 8.83 0.00 0.00 3.09
478 479 1.902938 GGCTGGAGATGCCCTTAATC 58.097 55.000 0.00 0.00 44.32 1.75
479 480 1.143684 GGCTGGAGATGCCCTTAATCA 59.856 52.381 0.00 0.00 44.32 2.57
480 481 2.423373 GGCTGGAGATGCCCTTAATCAA 60.423 50.000 0.00 0.00 44.32 2.57
481 482 2.883386 GCTGGAGATGCCCTTAATCAAG 59.117 50.000 0.00 0.00 34.97 3.02
482 483 2.883386 CTGGAGATGCCCTTAATCAAGC 59.117 50.000 0.00 0.00 34.97 4.01
483 484 1.876156 GGAGATGCCCTTAATCAAGCG 59.124 52.381 0.00 0.00 0.00 4.68
501 502 3.351740 AGCGAGTCTTGAGAGAATGAGA 58.648 45.455 0.00 0.00 32.66 3.27
506 507 3.698539 AGTCTTGAGAGAATGAGATGCGA 59.301 43.478 0.00 0.00 32.66 5.10
512 513 4.142093 TGAGAGAATGAGATGCGATTGACA 60.142 41.667 0.00 0.00 0.00 3.58
513 514 4.763073 AGAGAATGAGATGCGATTGACAA 58.237 39.130 0.00 0.00 0.00 3.18
515 516 5.293814 AGAGAATGAGATGCGATTGACAAAG 59.706 40.000 0.00 0.00 0.00 2.77
516 517 4.940046 AGAATGAGATGCGATTGACAAAGT 59.060 37.500 0.00 0.00 0.00 2.66
517 518 4.871993 ATGAGATGCGATTGACAAAGTC 57.128 40.909 0.00 0.00 0.00 3.01
519 520 3.433274 TGAGATGCGATTGACAAAGTCAC 59.567 43.478 0.00 0.00 42.60 3.67
520 521 2.744202 AGATGCGATTGACAAAGTCACC 59.256 45.455 0.00 0.00 42.60 4.02
521 522 1.960417 TGCGATTGACAAAGTCACCA 58.040 45.000 0.00 0.00 42.60 4.17
527 532 2.245159 TGACAAAGTCACCAGCAGAG 57.755 50.000 0.00 0.00 37.67 3.35
562 567 3.157949 CCGGAGAAGAGGGGGAGC 61.158 72.222 0.00 0.00 0.00 4.70
572 577 2.527875 GGGGGAGCGGATGAGGAT 60.528 66.667 0.00 0.00 0.00 3.24
573 578 2.588201 GGGGGAGCGGATGAGGATC 61.588 68.421 0.00 0.00 0.00 3.36
574 579 2.588201 GGGGAGCGGATGAGGATCC 61.588 68.421 2.48 2.48 44.54 3.36
575 580 2.588201 GGGAGCGGATGAGGATCCC 61.588 68.421 8.55 0.00 45.12 3.85
576 581 2.653702 GAGCGGATGAGGATCCCG 59.346 66.667 8.55 5.48 45.12 5.14
579 584 3.295273 CGGATGAGGATCCCGCGA 61.295 66.667 8.23 0.00 45.12 5.87
580 585 2.653702 GGATGAGGATCCCGCGAG 59.346 66.667 8.23 0.00 42.42 5.03
581 586 2.048690 GATGAGGATCCCGCGAGC 60.049 66.667 8.23 0.00 0.00 5.03
582 587 3.905705 GATGAGGATCCCGCGAGCG 62.906 68.421 8.23 10.86 39.44 5.03
623 628 2.005537 GCTGACAAACACAAGCGCG 61.006 57.895 0.00 0.00 0.00 6.86
666 699 1.654023 CGGGAAAAGGATCCAACCGC 61.654 60.000 15.82 7.40 41.55 5.68
697 736 1.740025 CTCCTCGCAATCCTCCAAAAC 59.260 52.381 0.00 0.00 0.00 2.43
703 742 2.766313 GCAATCCTCCAAAACCCAAAC 58.234 47.619 0.00 0.00 0.00 2.93
709 748 2.403259 CTCCAAAACCCAAACGCAATC 58.597 47.619 0.00 0.00 0.00 2.67
710 749 1.069358 TCCAAAACCCAAACGCAATCC 59.931 47.619 0.00 0.00 0.00 3.01
711 750 1.507562 CAAAACCCAAACGCAATCCC 58.492 50.000 0.00 0.00 0.00 3.85
712 751 1.069978 CAAAACCCAAACGCAATCCCT 59.930 47.619 0.00 0.00 0.00 4.20
713 752 0.966179 AAACCCAAACGCAATCCCTC 59.034 50.000 0.00 0.00 0.00 4.30
714 753 0.898326 AACCCAAACGCAATCCCTCC 60.898 55.000 0.00 0.00 0.00 4.30
715 754 2.052104 CCCAAACGCAATCCCTCCC 61.052 63.158 0.00 0.00 0.00 4.30
716 755 1.304052 CCAAACGCAATCCCTCCCA 60.304 57.895 0.00 0.00 0.00 4.37
717 756 0.684153 CCAAACGCAATCCCTCCCAT 60.684 55.000 0.00 0.00 0.00 4.00
718 757 1.185315 CAAACGCAATCCCTCCCATT 58.815 50.000 0.00 0.00 0.00 3.16
719 758 1.134946 CAAACGCAATCCCTCCCATTC 59.865 52.381 0.00 0.00 0.00 2.67
720 759 0.625849 AACGCAATCCCTCCCATTCT 59.374 50.000 0.00 0.00 0.00 2.40
721 760 0.181350 ACGCAATCCCTCCCATTCTC 59.819 55.000 0.00 0.00 0.00 2.87
722 761 0.536006 CGCAATCCCTCCCATTCTCC 60.536 60.000 0.00 0.00 0.00 3.71
723 762 0.849417 GCAATCCCTCCCATTCTCCT 59.151 55.000 0.00 0.00 0.00 3.69
724 763 1.202867 GCAATCCCTCCCATTCTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
725 764 2.416638 CAATCCCTCCCATTCTCCTCT 58.583 52.381 0.00 0.00 0.00 3.69
726 765 2.371510 CAATCCCTCCCATTCTCCTCTC 59.628 54.545 0.00 0.00 0.00 3.20
727 766 0.266152 TCCCTCCCATTCTCCTCTCC 59.734 60.000 0.00 0.00 0.00 3.71
732 775 1.219213 TCCCATTCTCCTCTCCTCTCC 59.781 57.143 0.00 0.00 0.00 3.71
754 797 1.789464 CTCCTCGCATGTCTTAATCGC 59.211 52.381 0.00 0.00 0.00 4.58
757 800 2.288213 CCTCGCATGTCTTAATCGCCTA 60.288 50.000 0.00 0.00 0.00 3.93
759 802 2.361119 TCGCATGTCTTAATCGCCTAGT 59.639 45.455 0.00 0.00 0.00 2.57
760 803 3.566742 TCGCATGTCTTAATCGCCTAGTA 59.433 43.478 0.00 0.00 0.00 1.82
761 804 3.914966 CGCATGTCTTAATCGCCTAGTAG 59.085 47.826 0.00 0.00 0.00 2.57
762 805 4.320275 CGCATGTCTTAATCGCCTAGTAGA 60.320 45.833 0.00 0.00 0.00 2.59
763 806 5.620205 CGCATGTCTTAATCGCCTAGTAGAT 60.620 44.000 0.00 0.00 0.00 1.98
765 808 6.090088 GCATGTCTTAATCGCCTAGTAGATTG 59.910 42.308 15.89 5.02 37.61 2.67
767 810 7.526142 TGTCTTAATCGCCTAGTAGATTGAT 57.474 36.000 15.89 0.00 37.61 2.57
768 811 7.952671 TGTCTTAATCGCCTAGTAGATTGATT 58.047 34.615 15.89 7.55 37.61 2.57
770 813 9.562583 GTCTTAATCGCCTAGTAGATTGATTAG 57.437 37.037 15.89 9.97 37.61 1.73
771 814 8.740906 TCTTAATCGCCTAGTAGATTGATTAGG 58.259 37.037 15.89 14.79 37.61 2.69
772 815 8.645814 TTAATCGCCTAGTAGATTGATTAGGA 57.354 34.615 15.89 0.00 37.61 2.94
773 816 7.726033 AATCGCCTAGTAGATTGATTAGGAT 57.274 36.000 0.00 0.00 35.93 3.24
774 817 7.726033 ATCGCCTAGTAGATTGATTAGGATT 57.274 36.000 0.00 0.00 35.71 3.01
775 818 7.540474 TCGCCTAGTAGATTGATTAGGATTT 57.460 36.000 0.00 0.00 35.71 2.17
776 819 8.645814 TCGCCTAGTAGATTGATTAGGATTTA 57.354 34.615 0.00 0.00 35.71 1.40
777 820 8.521176 TCGCCTAGTAGATTGATTAGGATTTAC 58.479 37.037 0.00 0.00 35.71 2.01
778 821 8.304596 CGCCTAGTAGATTGATTAGGATTTACA 58.695 37.037 0.00 0.00 35.71 2.41
795 838 2.285368 AGGGATCGTGGGAGGCAA 60.285 61.111 0.00 0.00 0.00 4.52
863 910 4.250305 ACCACCCACCACTCGCAC 62.250 66.667 0.00 0.00 0.00 5.34
889 936 4.436998 GTCCCCACTCCACGCTCG 62.437 72.222 0.00 0.00 0.00 5.03
890 937 4.988716 TCCCCACTCCACGCTCGT 62.989 66.667 0.00 0.00 0.00 4.18
891 938 4.003788 CCCCACTCCACGCTCGTT 62.004 66.667 0.00 0.00 0.00 3.85
892 939 2.642254 CCCCACTCCACGCTCGTTA 61.642 63.158 0.00 0.00 0.00 3.18
893 940 1.290955 CCCACTCCACGCTCGTTAA 59.709 57.895 0.00 0.00 0.00 2.01
908 955 4.192317 CTCGTTAATTAAGCTTCCTGCCT 58.808 43.478 0.00 0.00 44.23 4.75
910 957 3.001330 CGTTAATTAAGCTTCCTGCCTCG 59.999 47.826 0.00 0.00 44.23 4.63
914 961 0.614979 TAAGCTTCCTGCCTCGTCCT 60.615 55.000 0.00 0.00 44.23 3.85
948 995 2.507944 CCCTCCTCATTCAGCCGG 59.492 66.667 0.00 0.00 0.00 6.13
949 996 2.507944 CCTCCTCATTCAGCCGGG 59.492 66.667 2.18 0.00 0.00 5.73
950 997 2.066393 CCTCCTCATTCAGCCGGGA 61.066 63.158 2.18 0.00 0.00 5.14
967 1024 3.562732 GACCCCAACCAACTCCCCG 62.563 68.421 0.00 0.00 0.00 5.73
1054 1116 2.087009 CAGGTTCGTTCGCCGTCTC 61.087 63.158 0.00 0.00 37.94 3.36
1108 1405 3.491342 TCATTCGGATCGGATCTTCTCT 58.509 45.455 16.96 0.00 0.00 3.10
1109 1406 3.504134 TCATTCGGATCGGATCTTCTCTC 59.496 47.826 16.96 0.00 0.00 3.20
1111 1408 0.519519 CGGATCGGATCTTCTCTCGG 59.480 60.000 16.96 0.00 0.00 4.63
1112 1409 0.242555 GGATCGGATCTTCTCTCGGC 59.757 60.000 16.96 0.00 0.00 5.54
1117 1414 1.452145 GGATCTTCTCTCGGCGCTCT 61.452 60.000 7.64 0.00 0.00 4.09
1120 1417 3.132481 CTTCTCTCGGCGCTCTCCC 62.132 68.421 7.64 0.00 0.00 4.30
1130 1427 2.588989 GCTCTCCCTGCCCTCTTG 59.411 66.667 0.00 0.00 0.00 3.02
1131 1428 2.588989 CTCTCCCTGCCCTCTTGC 59.411 66.667 0.00 0.00 0.00 4.01
1132 1429 3.382803 CTCTCCCTGCCCTCTTGCG 62.383 68.421 0.00 0.00 0.00 4.85
1194 1494 1.450312 CCAGTCTCCACGATTGGGC 60.450 63.158 0.00 0.00 43.71 5.36
1199 1499 2.046700 TCCACGATTGGGCGGTTC 60.047 61.111 0.00 0.00 44.11 3.62
1200 1500 3.131478 CCACGATTGGGCGGTTCC 61.131 66.667 0.00 0.00 39.57 3.62
1218 1518 2.436824 GCTCCCCGCTCTGGTTTC 60.437 66.667 0.00 0.00 35.15 2.78
1294 1594 2.135664 CGATTTCGCTCCTTATCCGT 57.864 50.000 0.00 0.00 0.00 4.69
1337 1637 2.171725 GTTCGTGGGTAGCCATCGC 61.172 63.158 18.29 3.25 0.00 4.58
1344 1644 1.591863 GGTAGCCATCGCGAGGTTC 60.592 63.158 20.35 10.88 41.18 3.62
1370 1691 0.391263 CTAGCCCCACCAACGTTCTC 60.391 60.000 0.00 0.00 0.00 2.87
1384 1705 4.379339 ACGTTCTCTATCCTTCTTGAGC 57.621 45.455 0.00 0.00 0.00 4.26
1388 1709 5.066634 CGTTCTCTATCCTTCTTGAGCTGTA 59.933 44.000 0.00 0.00 0.00 2.74
1389 1710 6.238897 CGTTCTCTATCCTTCTTGAGCTGTAT 60.239 42.308 0.00 0.00 0.00 2.29
1390 1711 7.496747 GTTCTCTATCCTTCTTGAGCTGTATT 58.503 38.462 0.00 0.00 0.00 1.89
1391 1712 8.634444 GTTCTCTATCCTTCTTGAGCTGTATTA 58.366 37.037 0.00 0.00 0.00 0.98
1392 1713 8.768501 TCTCTATCCTTCTTGAGCTGTATTAA 57.231 34.615 0.00 0.00 0.00 1.40
1394 1715 7.727181 TCTATCCTTCTTGAGCTGTATTAACC 58.273 38.462 0.00 0.00 0.00 2.85
1395 1716 6.567602 ATCCTTCTTGAGCTGTATTAACCT 57.432 37.500 0.00 0.00 0.00 3.50
1396 1717 5.978814 TCCTTCTTGAGCTGTATTAACCTC 58.021 41.667 0.00 0.00 0.00 3.85
1397 1718 5.721960 TCCTTCTTGAGCTGTATTAACCTCT 59.278 40.000 0.00 0.00 0.00 3.69
1457 1782 3.564027 CCGCCGTCGCTGAATTCC 61.564 66.667 2.27 0.00 0.00 3.01
1491 1816 1.800586 CGACTGGTCCACATTTGACTG 59.199 52.381 0.00 0.00 33.22 3.51
1524 1849 4.394712 CGCCCGGCCTCTGTTCTT 62.395 66.667 3.10 0.00 0.00 2.52
1527 1852 1.219393 CCCGGCCTCTGTTCTTCTC 59.781 63.158 0.00 0.00 0.00 2.87
1535 1860 2.909662 CCTCTGTTCTTCTCCCCTTCTT 59.090 50.000 0.00 0.00 0.00 2.52
1547 1872 0.709992 CCCTTCTTCCCCCAAATCCA 59.290 55.000 0.00 0.00 0.00 3.41
1548 1873 1.619704 CCCTTCTTCCCCCAAATCCAC 60.620 57.143 0.00 0.00 0.00 4.02
1557 1882 0.826062 CCCAAATCCACCCTGCATTC 59.174 55.000 0.00 0.00 0.00 2.67
1562 1887 0.685458 ATCCACCCTGCATTCTTGGC 60.685 55.000 0.00 0.00 0.00 4.52
1563 1888 2.703798 CCACCCTGCATTCTTGGCG 61.704 63.158 0.00 0.00 0.00 5.69
1564 1889 1.973281 CACCCTGCATTCTTGGCGT 60.973 57.895 0.00 0.00 0.00 5.68
1566 1891 0.827507 ACCCTGCATTCTTGGCGTTT 60.828 50.000 0.00 0.00 0.00 3.60
1567 1892 0.109132 CCCTGCATTCTTGGCGTTTC 60.109 55.000 0.00 0.00 0.00 2.78
1568 1893 0.109132 CCTGCATTCTTGGCGTTTCC 60.109 55.000 0.00 0.00 0.00 3.13
1569 1894 0.454957 CTGCATTCTTGGCGTTTCCG 60.455 55.000 0.00 0.00 37.80 4.30
1618 1943 0.250234 AGCTGCCGCTTTCACTATCA 59.750 50.000 0.00 0.00 46.47 2.15
1620 1945 1.003116 GCTGCCGCTTTCACTATCATG 60.003 52.381 0.00 0.00 0.00 3.07
1622 1947 2.679837 CTGCCGCTTTCACTATCATGTT 59.320 45.455 0.00 0.00 0.00 2.71
1648 1974 1.136695 GATGCTACTGCTCTGCTCTGT 59.863 52.381 0.00 0.00 40.48 3.41
1650 1976 1.345741 TGCTACTGCTCTGCTCTGTTT 59.654 47.619 0.00 0.00 40.48 2.83
1698 2041 0.378257 ATATGCGCCGTTGCTTTCAG 59.622 50.000 4.18 0.00 35.36 3.02
1738 2081 1.749258 GATTGGGACGGGTCTTGGC 60.749 63.158 0.00 0.00 0.00 4.52
1739 2082 3.282374 ATTGGGACGGGTCTTGGCC 62.282 63.158 0.00 0.00 0.00 5.36
1743 2086 1.749258 GGACGGGTCTTGGCCATTC 60.749 63.158 6.09 0.00 0.00 2.67
1770 2113 3.364920 GCACGATTTTCTAAAAAGCTGGC 59.635 43.478 0.00 0.00 0.00 4.85
1774 2117 4.730521 CGATTTTCTAAAAAGCTGGCGATC 59.269 41.667 0.00 0.00 0.00 3.69
1775 2118 4.434713 TTTTCTAAAAAGCTGGCGATCC 57.565 40.909 0.00 0.00 0.00 3.36
1783 2126 0.326264 AGCTGGCGATCCTTTTGTCT 59.674 50.000 0.00 0.00 0.00 3.41
1784 2127 0.729690 GCTGGCGATCCTTTTGTCTC 59.270 55.000 0.00 0.00 0.00 3.36
1785 2128 1.373570 CTGGCGATCCTTTTGTCTCC 58.626 55.000 0.00 0.00 0.00 3.71
1786 2129 0.391130 TGGCGATCCTTTTGTCTCCG 60.391 55.000 0.00 0.00 0.00 4.63
1795 2138 0.601841 TTTTGTCTCCGTTCTCCCGC 60.602 55.000 0.00 0.00 0.00 6.13
2048 2403 1.280421 ACGACCGGAGTAAGTCCTACT 59.720 52.381 9.46 0.00 44.35 2.57
2128 2486 2.579684 GATCGTGTCCACAGGGAGCC 62.580 65.000 0.00 0.00 46.12 4.70
2229 2587 0.610509 ACTCCGAGAGCAGCTCTTCA 60.611 55.000 26.11 11.84 41.35 3.02
2238 2596 3.394836 AGCTCTTCAGGGCCGACC 61.395 66.667 0.00 0.00 40.67 4.79
2253 2611 1.228154 GACCACGGTGAAAAGGCCT 60.228 57.895 10.28 0.00 0.00 5.19
2280 2638 2.116983 TTTCTTCTCTGCTGCCGCCT 62.117 55.000 0.00 0.00 34.43 5.52
2393 2751 1.305930 GGGTTTGCGCCGAAGAAGAT 61.306 55.000 4.18 0.00 0.00 2.40
2395 2753 0.796312 GTTTGCGCCGAAGAAGATGA 59.204 50.000 4.18 0.00 0.00 2.92
2483 2841 0.179029 AACACCGGAACCTTGACTGG 60.179 55.000 9.46 0.00 38.40 4.00
2504 2862 7.166167 ACTGGTAATTCAGTTGGTAAGTAAGG 58.834 38.462 0.00 0.00 44.74 2.69
2601 2965 3.225104 AGCTGAAAAATGCTTCTGTGGA 58.775 40.909 0.00 0.00 35.86 4.02
2607 2972 4.574599 AAAATGCTTCTGTGGACACTTC 57.425 40.909 3.91 0.00 0.00 3.01
2618 2983 4.256110 TGTGGACACTTCAGAGCAATATG 58.744 43.478 3.91 0.00 0.00 1.78
2636 3001 6.614160 CAATATGTTTGCTTCATGTGTCTGA 58.386 36.000 0.00 0.00 0.00 3.27
2637 3002 6.822667 ATATGTTTGCTTCATGTGTCTGAA 57.177 33.333 0.00 0.00 34.14 3.02
2744 3109 4.058721 AGGATTGTTTGGAAGTGTTTGC 57.941 40.909 0.00 0.00 0.00 3.68
2764 3129 1.857837 CGCGGCAAATTTGAAGTTGTT 59.142 42.857 22.31 0.00 36.45 2.83
2765 3130 3.046390 CGCGGCAAATTTGAAGTTGTTA 58.954 40.909 22.31 0.00 36.45 2.41
2766 3131 3.672867 CGCGGCAAATTTGAAGTTGTTAT 59.327 39.130 22.31 0.00 36.45 1.89
2769 3134 5.050431 GCGGCAAATTTGAAGTTGTTATTGT 60.050 36.000 22.31 0.00 36.45 2.71
2812 3177 9.650539 AAGTAGAGCATAACATCATGATACATC 57.349 33.333 8.15 0.64 0.00 3.06
2877 3242 5.514500 AGTAGGCCTGATGTTTCCTTTAA 57.486 39.130 17.99 0.00 0.00 1.52
2936 3301 8.856490 TTTTCTCTTTATTCAGCAAACAGTTC 57.144 30.769 0.00 0.00 0.00 3.01
2971 3336 5.010282 TCCAGCTAAACCAGAAAGGAAATC 58.990 41.667 0.00 0.00 41.22 2.17
3004 3369 9.139174 CTCTGTTTTTGTTTTGTTGATACAGTT 57.861 29.630 0.00 0.00 35.28 3.16
3100 3465 2.093447 AGAAACTGCCCCAATAGTCGAG 60.093 50.000 0.00 0.00 0.00 4.04
3112 3477 4.383118 CCAATAGTCGAGGAACCAGAACAT 60.383 45.833 0.00 0.00 0.00 2.71
3331 3696 6.314917 ACAGTTGAATACCAGGAAGGAAATT 58.685 36.000 0.00 0.00 41.22 1.82
3394 3759 0.679321 GGGCAAGCAAGGAAGAGAGG 60.679 60.000 0.00 0.00 0.00 3.69
3400 3765 0.179097 GCAAGGAAGAGAGGGCTACG 60.179 60.000 0.00 0.00 0.00 3.51
3434 3799 2.698855 TGTTCCAGCTGATAAGGCTC 57.301 50.000 17.39 0.00 38.03 4.70
3466 3831 2.433318 GAGACCCGTGCTGCAGAC 60.433 66.667 20.43 11.85 0.00 3.51
3514 3883 8.910351 AGTATCTTGCAAGGTATATTTTCTCC 57.090 34.615 25.73 8.18 0.00 3.71
3537 3906 5.221067 CCTTCTTCACTATCTGCTAACGCTA 60.221 44.000 0.00 0.00 36.97 4.26
3539 3908 6.392625 TCTTCACTATCTGCTAACGCTAAT 57.607 37.500 0.00 0.00 36.97 1.73
3550 3919 4.523173 TGCTAACGCTAATGGATACTAGCT 59.477 41.667 0.00 0.00 38.00 3.32
3551 3920 5.708697 TGCTAACGCTAATGGATACTAGCTA 59.291 40.000 0.00 0.00 38.00 3.32
3598 3967 4.560128 TCAGTACTGAGTTAAGCTTGCAG 58.440 43.478 21.74 13.06 34.14 4.41
3631 4000 4.020218 TCTGGTCAGGTCATTTGGTAGAAG 60.020 45.833 0.00 0.00 0.00 2.85
3657 4026 3.928992 ACACATGTGCAAAGAGATAGACG 59.071 43.478 25.68 0.00 0.00 4.18
3659 4028 2.010145 TGTGCAAAGAGATAGACGCC 57.990 50.000 0.00 0.00 0.00 5.68
3664 4033 3.636764 TGCAAAGAGATAGACGCCATCTA 59.363 43.478 0.00 0.00 44.25 1.98
3666 4035 4.233789 CAAAGAGATAGACGCCATCTAGC 58.766 47.826 0.65 0.65 45.20 3.42
3670 4039 3.924918 GATAGACGCCATCTAGCTTGA 57.075 47.619 0.00 0.00 43.35 3.02
3696 4065 6.215121 CCATTTGAAGATTTGCACACTTGTA 58.785 36.000 4.34 0.00 0.00 2.41
3697 4066 6.869913 CCATTTGAAGATTTGCACACTTGTAT 59.130 34.615 4.34 0.00 0.00 2.29
3914 4283 3.627577 ACTTGCGCTTGGAGTATAAATGG 59.372 43.478 9.73 0.00 0.00 3.16
3922 4291 6.122964 GCTTGGAGTATAAATGGAAGGAGTT 58.877 40.000 0.00 0.00 0.00 3.01
3923 4292 6.603599 GCTTGGAGTATAAATGGAAGGAGTTT 59.396 38.462 0.00 0.00 0.00 2.66
3952 4321 7.702348 CGAAGTGTTACTTGATGATCTGATACA 59.298 37.037 0.00 0.00 38.80 2.29
3961 4330 7.335422 ACTTGATGATCTGATACAACTGAAACC 59.665 37.037 0.00 0.00 0.00 3.27
3980 4349 6.479990 TGAAACCTCTAATATGAAGCACATCG 59.520 38.462 0.00 0.00 40.07 3.84
4013 4382 5.297029 CGTAGGTCTGATCTGTAATCACTGA 59.703 44.000 0.00 0.00 37.09 3.41
4018 4387 6.095580 GGTCTGATCTGTAATCACTGACACTA 59.904 42.308 0.00 0.00 35.70 2.74
4052 4430 5.767168 AGCACAGCTTAGTTTCTCTGAATTT 59.233 36.000 0.00 0.00 33.89 1.82
4055 4433 7.296660 CACAGCTTAGTTTCTCTGAATTTCTG 58.703 38.462 0.00 0.00 0.00 3.02
4198 4580 7.336427 CAGCATCTAAAGAAATCACTTTCCTCT 59.664 37.037 0.00 0.00 41.46 3.69
4233 4615 2.027745 AGATGGAAAGAAAGCGAGCTCA 60.028 45.455 15.40 0.00 0.00 4.26
4385 4767 0.469917 CGGGCACATACCTTCCTCAT 59.530 55.000 0.00 0.00 0.00 2.90
4395 4777 3.347077 ACCTTCCTCATTCTCTTGCTG 57.653 47.619 0.00 0.00 0.00 4.41
4396 4778 2.026449 ACCTTCCTCATTCTCTTGCTGG 60.026 50.000 0.00 0.00 0.00 4.85
4397 4779 2.026449 CCTTCCTCATTCTCTTGCTGGT 60.026 50.000 0.00 0.00 0.00 4.00
4398 4780 2.775911 TCCTCATTCTCTTGCTGGTG 57.224 50.000 0.00 0.00 0.00 4.17
4399 4781 1.093159 CCTCATTCTCTTGCTGGTGC 58.907 55.000 0.00 0.00 40.20 5.01
4400 4782 1.339824 CCTCATTCTCTTGCTGGTGCT 60.340 52.381 0.00 0.00 40.48 4.40
4433 4815 4.880696 GCCTATGATAAATCTCATGCCTCC 59.119 45.833 0.00 0.00 36.55 4.30
4467 4854 4.860072 AGAAATGTTTCTCCTGAAAACGC 58.140 39.130 2.25 0.00 43.72 4.84
4568 4974 3.118629 TGCCAGATCGGATAATATCTGCC 60.119 47.826 4.24 0.00 45.09 4.85
4570 4976 4.739137 GCCAGATCGGATAATATCTGCCTC 60.739 50.000 4.24 4.32 45.09 4.70
4616 5022 1.508088 CTTGCCATGACCGCCTTTC 59.492 57.895 0.00 0.00 0.00 2.62
4735 5154 9.574516 AGGAAAAATGATATCCCATTACAGTAC 57.425 33.333 0.00 0.00 35.86 2.73
4812 5231 0.100503 GCACGGCGCCATTAATTTCT 59.899 50.000 28.98 0.00 32.94 2.52
4815 5234 3.550030 GCACGGCGCCATTAATTTCTTAT 60.550 43.478 28.98 0.00 32.94 1.73
4817 5236 3.880490 ACGGCGCCATTAATTTCTTATGA 59.120 39.130 28.98 0.00 0.00 2.15
4863 5288 3.195698 GAGCGGTTCGTGATGCCC 61.196 66.667 0.00 0.00 0.00 5.36
4957 5401 3.292492 AAAAACCTTCCCGTTCTGTCT 57.708 42.857 0.00 0.00 0.00 3.41
4959 5403 2.256117 AACCTTCCCGTTCTGTCTTG 57.744 50.000 0.00 0.00 0.00 3.02
4992 5441 0.404040 GGGTTGGATCCAAGTGTCCA 59.596 55.000 27.73 0.98 42.55 4.02
5024 5473 2.645802 ACGGCTACGAGAAATCTCTCT 58.354 47.619 8.67 0.00 45.26 3.10
5025 5474 2.614983 ACGGCTACGAGAAATCTCTCTC 59.385 50.000 8.67 0.00 45.26 3.20
5026 5475 2.875933 CGGCTACGAGAAATCTCTCTCT 59.124 50.000 8.67 0.00 45.26 3.10
5027 5476 3.059188 CGGCTACGAGAAATCTCTCTCTC 60.059 52.174 8.67 0.00 45.26 3.20
5028 5477 4.134563 GGCTACGAGAAATCTCTCTCTCT 58.865 47.826 8.67 0.00 45.26 3.10
5029 5478 4.213482 GGCTACGAGAAATCTCTCTCTCTC 59.787 50.000 8.67 0.00 45.26 3.20
5030 5479 5.057149 GCTACGAGAAATCTCTCTCTCTCT 58.943 45.833 8.67 0.00 45.26 3.10
5031 5480 5.177696 GCTACGAGAAATCTCTCTCTCTCTC 59.822 48.000 8.67 0.00 45.26 3.20
5032 5481 5.359194 ACGAGAAATCTCTCTCTCTCTCT 57.641 43.478 8.67 0.00 45.26 3.10
5033 5482 5.360591 ACGAGAAATCTCTCTCTCTCTCTC 58.639 45.833 8.67 0.00 45.26 3.20
5034 5483 5.129485 ACGAGAAATCTCTCTCTCTCTCTCT 59.871 44.000 8.67 0.00 45.26 3.10
5409 5882 4.319249 CATGCATGCATCTTGCCG 57.681 55.556 30.07 14.24 44.23 5.69
5410 5883 1.949133 CATGCATGCATCTTGCCGC 60.949 57.895 30.07 3.04 44.23 6.53
5411 5884 3.146726 ATGCATGCATCTTGCCGCC 62.147 57.895 27.46 0.00 44.23 6.13
5412 5885 3.524606 GCATGCATCTTGCCGCCT 61.525 61.111 14.21 0.00 44.23 5.52
5413 5886 2.719979 CATGCATCTTGCCGCCTC 59.280 61.111 0.00 0.00 44.23 4.70
5414 5887 1.822613 CATGCATCTTGCCGCCTCT 60.823 57.895 0.00 0.00 44.23 3.69
5415 5888 1.822613 ATGCATCTTGCCGCCTCTG 60.823 57.895 0.00 0.00 44.23 3.35
5416 5889 3.885521 GCATCTTGCCGCCTCTGC 61.886 66.667 0.00 0.00 37.42 4.26
5417 5890 2.124819 CATCTTGCCGCCTCTGCT 60.125 61.111 0.00 0.00 34.43 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.733960 CGCTGTCGAGGACCACGA 61.734 66.667 10.16 10.16 38.10 4.35
24 25 3.733960 TCGCTGTCGAGGACCACG 61.734 66.667 4.78 4.78 40.21 4.94
25 26 2.126424 GTCGCTGTCGAGGACCAC 60.126 66.667 0.00 0.00 46.46 4.16
30 31 3.785499 TCGTCGTCGCTGTCGAGG 61.785 66.667 0.00 9.88 46.46 4.63
31 32 2.571096 GTCGTCGTCGCTGTCGAG 60.571 66.667 0.00 0.00 46.46 4.04
32 33 4.419957 CGTCGTCGTCGCTGTCGA 62.420 66.667 0.00 0.00 43.28 4.20
33 34 4.419957 TCGTCGTCGTCGCTGTCG 62.420 66.667 7.01 0.53 38.33 4.35
34 35 2.864248 GTCGTCGTCGTCGCTGTC 60.864 66.667 7.01 0.00 38.33 3.51
35 36 4.714555 CGTCGTCGTCGTCGCTGT 62.715 66.667 8.64 0.00 40.72 4.40
36 37 4.419957 TCGTCGTCGTCGTCGCTG 62.420 66.667 15.28 2.44 44.86 5.18
37 38 4.421446 GTCGTCGTCGTCGTCGCT 62.421 66.667 15.28 0.00 44.86 4.93
81 82 3.809013 CATCCCTCCCCCGGTTGG 61.809 72.222 0.00 0.00 0.00 3.77
82 83 4.506255 GCATCCCTCCCCCGGTTG 62.506 72.222 0.00 0.00 0.00 3.77
87 88 4.201122 CTGCTGCATCCCTCCCCC 62.201 72.222 1.31 0.00 0.00 5.40
88 89 4.201122 CCTGCTGCATCCCTCCCC 62.201 72.222 1.31 0.00 0.00 4.81
89 90 4.201122 CCCTGCTGCATCCCTCCC 62.201 72.222 1.31 0.00 0.00 4.30
90 91 3.092511 TCCCTGCTGCATCCCTCC 61.093 66.667 1.31 0.00 0.00 4.30
91 92 2.191641 GTCCCTGCTGCATCCCTC 59.808 66.667 1.31 0.00 0.00 4.30
92 93 3.790437 CGTCCCTGCTGCATCCCT 61.790 66.667 1.31 0.00 0.00 4.20
93 94 4.864334 CCGTCCCTGCTGCATCCC 62.864 72.222 1.31 0.00 0.00 3.85
120 121 3.397649 ATCGTCGTCGTCGTCGTCG 62.398 63.158 20.39 20.39 45.27 5.12
121 122 1.922220 CATCGTCGTCGTCGTCGTC 60.922 63.158 18.44 5.52 45.27 4.20
122 123 1.690283 ATCATCGTCGTCGTCGTCGT 61.690 55.000 18.44 6.36 45.27 4.34
123 124 1.012562 ATCATCGTCGTCGTCGTCG 60.013 57.895 14.18 14.18 46.06 5.12
124 125 0.025898 TCATCATCGTCGTCGTCGTC 59.974 55.000 11.41 0.00 38.33 4.20
125 126 0.247576 GTCATCATCGTCGTCGTCGT 60.248 55.000 11.41 0.00 38.33 4.34
126 127 1.247261 CGTCATCATCGTCGTCGTCG 61.247 60.000 5.50 5.50 38.33 5.12
127 128 0.025898 TCGTCATCATCGTCGTCGTC 59.974 55.000 1.33 0.00 38.33 4.20
128 129 0.247576 GTCGTCATCATCGTCGTCGT 60.248 55.000 1.33 0.00 38.33 4.34
129 130 1.247261 CGTCGTCATCATCGTCGTCG 61.247 60.000 0.00 0.00 35.85 5.12
130 131 0.025898 TCGTCGTCATCATCGTCGTC 59.974 55.000 0.00 0.00 39.70 4.20
131 132 0.247576 GTCGTCGTCATCATCGTCGT 60.248 55.000 0.00 0.00 39.70 4.34
132 133 1.247261 CGTCGTCGTCATCATCGTCG 61.247 60.000 0.00 0.00 39.95 5.12
133 134 0.924363 CCGTCGTCGTCATCATCGTC 60.924 60.000 0.71 0.00 35.01 4.20
134 135 1.062047 CCGTCGTCGTCATCATCGT 59.938 57.895 0.71 0.00 35.01 3.73
135 136 2.286559 GCCGTCGTCGTCATCATCG 61.287 63.158 0.71 0.00 35.01 3.84
136 137 2.286559 CGCCGTCGTCGTCATCATC 61.287 63.158 0.71 0.00 35.01 2.92
137 138 2.277949 CGCCGTCGTCGTCATCAT 60.278 61.111 0.71 0.00 35.01 2.45
138 139 4.470170 CCGCCGTCGTCGTCATCA 62.470 66.667 0.71 0.00 35.01 3.07
139 140 4.471726 ACCGCCGTCGTCGTCATC 62.472 66.667 0.71 0.00 35.01 2.92
140 141 4.771356 CACCGCCGTCGTCGTCAT 62.771 66.667 0.71 0.00 35.01 3.06
144 145 3.792047 TAGTCACCGCCGTCGTCG 61.792 66.667 0.00 0.00 0.00 5.12
145 146 2.202401 GTAGTCACCGCCGTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
146 147 2.979676 TGTAGTCACCGCCGTCGT 60.980 61.111 0.00 0.00 0.00 4.34
147 148 2.503375 GTGTAGTCACCGCCGTCG 60.503 66.667 0.00 0.00 38.51 5.12
148 149 2.503375 CGTGTAGTCACCGCCGTC 60.503 66.667 0.00 0.00 41.09 4.79
149 150 4.712425 GCGTGTAGTCACCGCCGT 62.712 66.667 0.00 0.00 41.09 5.68
152 153 4.712425 ACCGCGTGTAGTCACCGC 62.712 66.667 4.92 0.00 41.09 5.68
153 154 2.049802 AACCGCGTGTAGTCACCG 60.050 61.111 4.92 0.00 41.09 4.94
154 155 0.523072 TAGAACCGCGTGTAGTCACC 59.477 55.000 4.92 0.00 41.09 4.02
155 156 1.611043 GTAGAACCGCGTGTAGTCAC 58.389 55.000 4.92 0.00 40.79 3.67
156 157 0.523072 GGTAGAACCGCGTGTAGTCA 59.477 55.000 4.92 0.00 0.00 3.41
157 158 3.319245 GGTAGAACCGCGTGTAGTC 57.681 57.895 4.92 0.00 0.00 2.59
167 168 2.783288 CCGAGGAGGCGGTAGAACC 61.783 68.421 0.00 0.00 46.07 3.62
168 169 2.806237 CCGAGGAGGCGGTAGAAC 59.194 66.667 0.00 0.00 46.07 3.01
177 178 0.105039 GGTTCTACATGCCGAGGAGG 59.895 60.000 0.00 0.00 44.97 4.30
178 179 3.669354 GGTTCTACATGCCGAGGAG 57.331 57.895 0.00 0.00 0.00 3.69
184 185 1.447317 CCCATGCGGTTCTACATGCC 61.447 60.000 0.00 0.00 41.88 4.40
185 186 2.024918 CCCATGCGGTTCTACATGC 58.975 57.895 0.00 0.00 41.88 4.06
186 187 2.024918 GCCCATGCGGTTCTACATG 58.975 57.895 0.00 0.00 42.67 3.21
187 188 4.559502 GCCCATGCGGTTCTACAT 57.440 55.556 2.68 0.00 0.00 2.29
245 246 2.526450 AAAACTACCGCGGGCTACCC 62.526 60.000 31.76 0.00 41.09 3.69
246 247 0.674581 AAAAACTACCGCGGGCTACC 60.675 55.000 31.76 0.00 0.00 3.18
247 248 2.845019 AAAAACTACCGCGGGCTAC 58.155 52.632 31.76 0.00 0.00 3.58
280 281 9.341899 GCGAGTTCATTCAAACTTTAACATATT 57.658 29.630 0.00 0.00 39.55 1.28
281 282 7.968405 GGCGAGTTCATTCAAACTTTAACATAT 59.032 33.333 0.00 0.00 39.55 1.78
282 283 7.302524 GGCGAGTTCATTCAAACTTTAACATA 58.697 34.615 0.00 0.00 39.55 2.29
283 284 6.149633 GGCGAGTTCATTCAAACTTTAACAT 58.850 36.000 0.00 0.00 39.55 2.71
284 285 5.516090 GGCGAGTTCATTCAAACTTTAACA 58.484 37.500 0.00 0.00 39.55 2.41
285 286 4.611366 CGGCGAGTTCATTCAAACTTTAAC 59.389 41.667 0.00 0.00 39.55 2.01
286 287 4.512198 TCGGCGAGTTCATTCAAACTTTAA 59.488 37.500 4.99 0.00 39.55 1.52
287 288 4.059511 TCGGCGAGTTCATTCAAACTTTA 58.940 39.130 4.99 0.00 39.55 1.85
288 289 2.875933 TCGGCGAGTTCATTCAAACTTT 59.124 40.909 4.99 0.00 39.55 2.66
289 290 2.489971 TCGGCGAGTTCATTCAAACTT 58.510 42.857 4.99 0.00 39.55 2.66
290 291 2.163818 TCGGCGAGTTCATTCAAACT 57.836 45.000 4.99 0.00 42.10 2.66
291 292 2.159627 ACATCGGCGAGTTCATTCAAAC 59.840 45.455 17.22 0.00 0.00 2.93
292 293 2.422597 ACATCGGCGAGTTCATTCAAA 58.577 42.857 17.22 0.00 0.00 2.69
293 294 2.093306 ACATCGGCGAGTTCATTCAA 57.907 45.000 17.22 0.00 0.00 2.69
294 295 2.093306 AACATCGGCGAGTTCATTCA 57.907 45.000 17.22 0.00 0.00 2.57
295 296 3.541516 CGTAAACATCGGCGAGTTCATTC 60.542 47.826 17.22 9.63 0.00 2.67
296 297 2.347452 CGTAAACATCGGCGAGTTCATT 59.653 45.455 17.22 8.42 0.00 2.57
297 298 1.924524 CGTAAACATCGGCGAGTTCAT 59.075 47.619 17.22 8.38 0.00 2.57
298 299 1.336148 ACGTAAACATCGGCGAGTTCA 60.336 47.619 17.22 3.35 0.00 3.18
299 300 1.343506 ACGTAAACATCGGCGAGTTC 58.656 50.000 17.22 8.01 0.00 3.01
300 301 1.787012 AACGTAAACATCGGCGAGTT 58.213 45.000 17.22 16.23 0.00 3.01
301 302 2.634982 TAACGTAAACATCGGCGAGT 57.365 45.000 17.22 10.88 0.00 4.18
302 303 3.976468 TTTAACGTAAACATCGGCGAG 57.024 42.857 17.22 10.20 0.00 5.03
303 304 4.925061 AATTTAACGTAAACATCGGCGA 57.075 36.364 13.87 13.87 0.00 5.54
304 305 5.080731 TCAAATTTAACGTAAACATCGGCG 58.919 37.500 0.00 0.00 0.00 6.46
305 306 6.081693 ACTCAAATTTAACGTAAACATCGGC 58.918 36.000 0.00 0.00 0.00 5.54
306 307 7.588488 ACAACTCAAATTTAACGTAAACATCGG 59.412 33.333 0.00 0.00 0.00 4.18
307 308 8.483743 ACAACTCAAATTTAACGTAAACATCG 57.516 30.769 0.00 0.00 0.00 3.84
312 313 9.742552 GCAAAAACAACTCAAATTTAACGTAAA 57.257 25.926 0.00 0.00 0.00 2.01
313 314 8.102716 CGCAAAAACAACTCAAATTTAACGTAA 58.897 29.630 0.00 0.00 0.00 3.18
314 315 7.601775 CGCAAAAACAACTCAAATTTAACGTA 58.398 30.769 0.00 0.00 0.00 3.57
315 316 6.462647 CGCAAAAACAACTCAAATTTAACGT 58.537 32.000 0.00 0.00 0.00 3.99
316 317 5.388288 GCGCAAAAACAACTCAAATTTAACG 59.612 36.000 0.30 0.00 0.00 3.18
317 318 5.675012 GGCGCAAAAACAACTCAAATTTAAC 59.325 36.000 10.83 0.00 0.00 2.01
318 319 5.500931 CGGCGCAAAAACAACTCAAATTTAA 60.501 36.000 10.83 0.00 0.00 1.52
319 320 4.026475 CGGCGCAAAAACAACTCAAATTTA 60.026 37.500 10.83 0.00 0.00 1.40
320 321 3.242252 CGGCGCAAAAACAACTCAAATTT 60.242 39.130 10.83 0.00 0.00 1.82
321 322 2.283884 CGGCGCAAAAACAACTCAAATT 59.716 40.909 10.83 0.00 0.00 1.82
322 323 1.857837 CGGCGCAAAAACAACTCAAAT 59.142 42.857 10.83 0.00 0.00 2.32
323 324 1.272781 CGGCGCAAAAACAACTCAAA 58.727 45.000 10.83 0.00 0.00 2.69
324 325 0.171455 ACGGCGCAAAAACAACTCAA 59.829 45.000 10.83 0.00 0.00 3.02
325 326 0.524392 CACGGCGCAAAAACAACTCA 60.524 50.000 10.83 0.00 0.00 3.41
326 327 0.524604 ACACGGCGCAAAAACAACTC 60.525 50.000 10.83 0.00 0.00 3.01
327 328 0.109039 AACACGGCGCAAAAACAACT 60.109 45.000 10.83 0.00 0.00 3.16
328 329 0.716666 AAACACGGCGCAAAAACAAC 59.283 45.000 10.83 0.00 0.00 3.32
329 330 0.716108 CAAACACGGCGCAAAAACAA 59.284 45.000 10.83 0.00 0.00 2.83
330 331 0.109272 TCAAACACGGCGCAAAAACA 60.109 45.000 10.83 0.00 0.00 2.83
331 332 0.296349 GTCAAACACGGCGCAAAAAC 59.704 50.000 10.83 0.00 0.00 2.43
332 333 0.171455 AGTCAAACACGGCGCAAAAA 59.829 45.000 10.83 0.00 0.00 1.94
333 334 0.171455 AAGTCAAACACGGCGCAAAA 59.829 45.000 10.83 0.00 0.00 2.44
334 335 0.171455 AAAGTCAAACACGGCGCAAA 59.829 45.000 10.83 0.00 0.00 3.68
335 336 0.171455 AAAAGTCAAACACGGCGCAA 59.829 45.000 10.83 0.00 0.00 4.85
336 337 0.171455 AAAAAGTCAAACACGGCGCA 59.829 45.000 10.83 0.00 0.00 6.09
337 338 0.843872 GAAAAAGTCAAACACGGCGC 59.156 50.000 6.90 0.00 0.00 6.53
338 339 1.109296 CGAAAAAGTCAAACACGGCG 58.891 50.000 4.80 4.80 0.00 6.46
339 340 2.106418 GTCGAAAAAGTCAAACACGGC 58.894 47.619 0.00 0.00 0.00 5.68
340 341 3.668596 AGTCGAAAAAGTCAAACACGG 57.331 42.857 0.00 0.00 0.00 4.94
341 342 4.959757 GGTTAGTCGAAAAAGTCAAACACG 59.040 41.667 0.00 0.00 0.00 4.49
342 343 5.065602 AGGGTTAGTCGAAAAAGTCAAACAC 59.934 40.000 0.00 0.00 0.00 3.32
343 344 5.065474 CAGGGTTAGTCGAAAAAGTCAAACA 59.935 40.000 0.00 0.00 0.00 2.83
344 345 5.505159 CCAGGGTTAGTCGAAAAAGTCAAAC 60.505 44.000 0.00 0.00 0.00 2.93
345 346 4.577283 CCAGGGTTAGTCGAAAAAGTCAAA 59.423 41.667 0.00 0.00 0.00 2.69
346 347 4.131596 CCAGGGTTAGTCGAAAAAGTCAA 58.868 43.478 0.00 0.00 0.00 3.18
347 348 3.495453 CCCAGGGTTAGTCGAAAAAGTCA 60.495 47.826 0.00 0.00 0.00 3.41
348 349 3.072211 CCCAGGGTTAGTCGAAAAAGTC 58.928 50.000 0.00 0.00 0.00 3.01
349 350 2.812983 GCCCAGGGTTAGTCGAAAAAGT 60.813 50.000 7.55 0.00 0.00 2.66
350 351 1.810755 GCCCAGGGTTAGTCGAAAAAG 59.189 52.381 7.55 0.00 0.00 2.27
351 352 1.878948 CGCCCAGGGTTAGTCGAAAAA 60.879 52.381 7.55 0.00 0.00 1.94
352 353 0.320946 CGCCCAGGGTTAGTCGAAAA 60.321 55.000 7.55 0.00 0.00 2.29
353 354 1.294138 CGCCCAGGGTTAGTCGAAA 59.706 57.895 7.55 0.00 0.00 3.46
354 355 1.880819 GACGCCCAGGGTTAGTCGAA 61.881 60.000 7.55 0.00 0.00 3.71
355 356 2.283388 ACGCCCAGGGTTAGTCGA 60.283 61.111 7.55 0.00 0.00 4.20
356 357 2.183555 GACGCCCAGGGTTAGTCG 59.816 66.667 7.55 3.91 0.00 4.18
357 358 2.183555 CGACGCCCAGGGTTAGTC 59.816 66.667 7.55 13.30 0.00 2.59
358 359 2.602568 ACGACGCCCAGGGTTAGT 60.603 61.111 7.55 5.15 0.00 2.24
359 360 2.125673 CACGACGCCCAGGGTTAG 60.126 66.667 7.55 1.50 0.00 2.34
360 361 2.601067 TCACGACGCCCAGGGTTA 60.601 61.111 7.55 0.00 0.00 2.85
361 362 4.309950 GTCACGACGCCCAGGGTT 62.310 66.667 7.55 0.00 0.00 4.11
363 364 4.742201 CAGTCACGACGCCCAGGG 62.742 72.222 0.00 0.00 36.20 4.45
364 365 3.633094 CTCAGTCACGACGCCCAGG 62.633 68.421 0.00 0.00 36.20 4.45
365 366 2.126307 CTCAGTCACGACGCCCAG 60.126 66.667 0.00 0.00 36.20 4.45
366 367 3.680786 CCTCAGTCACGACGCCCA 61.681 66.667 0.00 0.00 36.20 5.36
367 368 3.343788 CTCCTCAGTCACGACGCCC 62.344 68.421 0.00 0.00 36.20 6.13
368 369 2.179517 CTCCTCAGTCACGACGCC 59.820 66.667 0.00 0.00 36.20 5.68
369 370 2.505118 GCTCCTCAGTCACGACGC 60.505 66.667 0.00 0.00 36.20 5.19
370 371 0.524392 GATGCTCCTCAGTCACGACG 60.524 60.000 0.00 0.00 36.20 5.12
371 372 0.528017 TGATGCTCCTCAGTCACGAC 59.472 55.000 0.00 0.00 0.00 4.34
372 373 0.528017 GTGATGCTCCTCAGTCACGA 59.472 55.000 0.00 0.00 32.64 4.35
373 374 3.041874 GTGATGCTCCTCAGTCACG 57.958 57.895 0.00 0.00 32.64 4.35
374 375 1.080995 GCGTGATGCTCCTCAGTCAC 61.081 60.000 0.00 0.00 41.73 3.67
375 376 1.216444 GCGTGATGCTCCTCAGTCA 59.784 57.895 0.00 0.00 41.73 3.41
376 377 1.520342 GGCGTGATGCTCCTCAGTC 60.520 63.158 0.00 0.00 45.43 3.51
377 378 2.581354 GGCGTGATGCTCCTCAGT 59.419 61.111 0.00 0.00 45.43 3.41
378 379 2.202987 GGGCGTGATGCTCCTCAG 60.203 66.667 0.00 0.00 45.43 3.35
383 384 2.045926 ACTTGGGGCGTGATGCTC 60.046 61.111 0.00 0.00 46.36 4.26
384 385 2.360350 CACTTGGGGCGTGATGCT 60.360 61.111 0.00 0.00 45.43 3.79
385 386 4.120331 GCACTTGGGGCGTGATGC 62.120 66.667 0.00 0.00 45.38 3.91
393 394 2.670251 TAAACCGCGCACTTGGGG 60.670 61.111 8.75 0.77 46.74 4.96
394 395 2.867472 CTAAACCGCGCACTTGGG 59.133 61.111 8.75 1.66 0.00 4.12
395 396 2.175811 GCTAAACCGCGCACTTGG 59.824 61.111 8.75 2.12 0.00 3.61
460 461 2.645838 TGATTAAGGGCATCTCCAGC 57.354 50.000 0.00 0.00 36.21 4.85
461 462 2.883386 GCTTGATTAAGGGCATCTCCAG 59.117 50.000 0.00 0.00 36.21 3.86
462 463 2.746142 CGCTTGATTAAGGGCATCTCCA 60.746 50.000 1.25 0.00 39.55 3.86
463 464 1.876156 CGCTTGATTAAGGGCATCTCC 59.124 52.381 1.25 0.00 39.55 3.71
464 465 2.805099 CTCGCTTGATTAAGGGCATCTC 59.195 50.000 9.18 0.00 44.12 2.75
465 466 2.171448 ACTCGCTTGATTAAGGGCATCT 59.829 45.455 9.18 0.00 44.12 2.90
466 467 2.545946 GACTCGCTTGATTAAGGGCATC 59.454 50.000 9.18 5.84 44.12 3.91
467 468 2.171448 AGACTCGCTTGATTAAGGGCAT 59.829 45.455 9.18 0.47 44.12 4.40
468 469 1.555075 AGACTCGCTTGATTAAGGGCA 59.445 47.619 9.18 0.00 44.12 5.36
469 470 2.317530 AGACTCGCTTGATTAAGGGC 57.682 50.000 9.18 0.00 44.12 5.19
479 480 3.761218 TCTCATTCTCTCAAGACTCGCTT 59.239 43.478 0.00 0.00 37.29 4.68
480 481 3.351740 TCTCATTCTCTCAAGACTCGCT 58.648 45.455 0.00 0.00 0.00 4.93
481 482 3.773860 TCTCATTCTCTCAAGACTCGC 57.226 47.619 0.00 0.00 0.00 5.03
482 483 4.043750 GCATCTCATTCTCTCAAGACTCG 58.956 47.826 0.00 0.00 0.00 4.18
483 484 4.043750 CGCATCTCATTCTCTCAAGACTC 58.956 47.826 0.00 0.00 0.00 3.36
496 497 4.093998 GTGACTTTGTCAATCGCATCTCAT 59.906 41.667 1.73 0.00 44.49 2.90
499 500 2.744202 GGTGACTTTGTCAATCGCATCT 59.256 45.455 1.73 0.00 44.49 2.90
501 502 2.485426 CTGGTGACTTTGTCAATCGCAT 59.515 45.455 1.73 0.00 44.49 4.73
506 507 3.144506 CTCTGCTGGTGACTTTGTCAAT 58.855 45.455 1.73 0.00 44.49 2.57
512 513 1.678101 GTTTGCTCTGCTGGTGACTTT 59.322 47.619 0.00 0.00 0.00 2.66
513 514 1.312815 GTTTGCTCTGCTGGTGACTT 58.687 50.000 0.00 0.00 0.00 3.01
515 516 1.024271 TTGTTTGCTCTGCTGGTGAC 58.976 50.000 0.00 0.00 0.00 3.67
516 517 1.761449 TTTGTTTGCTCTGCTGGTGA 58.239 45.000 0.00 0.00 0.00 4.02
517 518 2.400399 CATTTGTTTGCTCTGCTGGTG 58.600 47.619 0.00 0.00 0.00 4.17
519 520 1.269883 TGCATTTGTTTGCTCTGCTGG 60.270 47.619 0.00 0.00 43.18 4.85
520 521 2.143008 TGCATTTGTTTGCTCTGCTG 57.857 45.000 0.00 0.00 43.18 4.41
521 522 2.894763 TTGCATTTGTTTGCTCTGCT 57.105 40.000 0.00 0.00 43.18 4.24
527 532 1.399984 CGGGCATTTGCATTTGTTTGC 60.400 47.619 4.74 0.00 44.36 3.68
590 595 2.049985 AGCACACGAGCACGACTC 60.050 61.111 11.40 0.00 42.66 3.36
598 603 1.006086 TGTGTTTGTCAGCACACGAG 58.994 50.000 11.01 0.00 45.37 4.18
623 628 1.226379 CCGTGTTGAATCCATGCGC 60.226 57.895 0.00 0.00 0.00 6.09
627 632 2.711542 GTTCTCCCGTGTTGAATCCAT 58.288 47.619 0.00 0.00 0.00 3.41
628 633 1.606994 CGTTCTCCCGTGTTGAATCCA 60.607 52.381 0.00 0.00 0.00 3.41
629 634 1.076332 CGTTCTCCCGTGTTGAATCC 58.924 55.000 0.00 0.00 0.00 3.01
634 644 0.533308 TTTCCCGTTCTCCCGTGTTG 60.533 55.000 0.00 0.00 0.00 3.33
666 699 1.066587 GCGAGGAGAATCGGGAGTG 59.933 63.158 0.00 0.00 42.94 3.51
697 736 2.052104 GGGAGGGATTGCGTTTGGG 61.052 63.158 0.00 0.00 0.00 4.12
703 742 0.536006 GGAGAATGGGAGGGATTGCG 60.536 60.000 0.00 0.00 0.00 4.85
709 748 0.267356 AGGAGAGGAGAATGGGAGGG 59.733 60.000 0.00 0.00 0.00 4.30
710 749 1.220236 AGAGGAGAGGAGAATGGGAGG 59.780 57.143 0.00 0.00 0.00 4.30
711 750 2.597455 GAGAGGAGAGGAGAATGGGAG 58.403 57.143 0.00 0.00 0.00 4.30
712 751 1.219213 GGAGAGGAGAGGAGAATGGGA 59.781 57.143 0.00 0.00 0.00 4.37
713 752 1.220236 AGGAGAGGAGAGGAGAATGGG 59.780 57.143 0.00 0.00 0.00 4.00
714 753 2.177669 AGAGGAGAGGAGAGGAGAATGG 59.822 54.545 0.00 0.00 0.00 3.16
715 754 3.490348 GAGAGGAGAGGAGAGGAGAATG 58.510 54.545 0.00 0.00 0.00 2.67
716 755 2.447047 GGAGAGGAGAGGAGAGGAGAAT 59.553 54.545 0.00 0.00 0.00 2.40
717 756 1.850345 GGAGAGGAGAGGAGAGGAGAA 59.150 57.143 0.00 0.00 0.00 2.87
718 757 1.010793 AGGAGAGGAGAGGAGAGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
719 758 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
720 759 1.518367 GAGGAGAGGAGAGGAGAGGA 58.482 60.000 0.00 0.00 0.00 3.71
721 760 0.108585 CGAGGAGAGGAGAGGAGAGG 59.891 65.000 0.00 0.00 0.00 3.69
722 761 0.535102 GCGAGGAGAGGAGAGGAGAG 60.535 65.000 0.00 0.00 0.00 3.20
723 762 1.275421 TGCGAGGAGAGGAGAGGAGA 61.275 60.000 0.00 0.00 0.00 3.71
724 763 0.178992 ATGCGAGGAGAGGAGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
725 764 0.467106 CATGCGAGGAGAGGAGAGGA 60.467 60.000 0.00 0.00 0.00 3.71
726 765 0.754957 ACATGCGAGGAGAGGAGAGG 60.755 60.000 0.00 0.00 0.00 3.69
727 766 0.667993 GACATGCGAGGAGAGGAGAG 59.332 60.000 0.00 0.00 0.00 3.20
732 775 3.304257 CGATTAAGACATGCGAGGAGAG 58.696 50.000 0.00 0.00 0.00 3.20
757 800 8.798975 TCCCTGTAAATCCTAATCAATCTACT 57.201 34.615 0.00 0.00 0.00 2.57
759 802 8.531982 CGATCCCTGTAAATCCTAATCAATCTA 58.468 37.037 0.00 0.00 0.00 1.98
760 803 7.016661 ACGATCCCTGTAAATCCTAATCAATCT 59.983 37.037 0.00 0.00 0.00 2.40
761 804 7.118390 CACGATCCCTGTAAATCCTAATCAATC 59.882 40.741 0.00 0.00 0.00 2.67
762 805 6.936900 CACGATCCCTGTAAATCCTAATCAAT 59.063 38.462 0.00 0.00 0.00 2.57
763 806 6.288294 CACGATCCCTGTAAATCCTAATCAA 58.712 40.000 0.00 0.00 0.00 2.57
765 808 5.238583 CCACGATCCCTGTAAATCCTAATC 58.761 45.833 0.00 0.00 0.00 1.75
767 810 3.389983 CCCACGATCCCTGTAAATCCTAA 59.610 47.826 0.00 0.00 0.00 2.69
768 811 2.969950 CCCACGATCCCTGTAAATCCTA 59.030 50.000 0.00 0.00 0.00 2.94
770 813 1.766496 TCCCACGATCCCTGTAAATCC 59.234 52.381 0.00 0.00 0.00 3.01
771 814 2.224305 CCTCCCACGATCCCTGTAAATC 60.224 54.545 0.00 0.00 0.00 2.17
772 815 1.768870 CCTCCCACGATCCCTGTAAAT 59.231 52.381 0.00 0.00 0.00 1.40
773 816 1.200519 CCTCCCACGATCCCTGTAAA 58.799 55.000 0.00 0.00 0.00 2.01
774 817 1.335132 GCCTCCCACGATCCCTGTAA 61.335 60.000 0.00 0.00 0.00 2.41
775 818 1.760875 GCCTCCCACGATCCCTGTA 60.761 63.158 0.00 0.00 0.00 2.74
776 819 3.083997 GCCTCCCACGATCCCTGT 61.084 66.667 0.00 0.00 0.00 4.00
777 820 2.196997 TTTGCCTCCCACGATCCCTG 62.197 60.000 0.00 0.00 0.00 4.45
778 821 1.281925 ATTTGCCTCCCACGATCCCT 61.282 55.000 0.00 0.00 0.00 4.20
781 824 1.463674 ACAATTTGCCTCCCACGATC 58.536 50.000 0.00 0.00 0.00 3.69
795 838 6.290605 AGCCTGCTTGATTAACAAAACAATT 58.709 32.000 0.00 0.00 38.08 2.32
825 872 1.223487 CCGGTGGGGGTGATTAGTG 59.777 63.158 0.00 0.00 0.00 2.74
883 930 3.617263 CAGGAAGCTTAATTAACGAGCGT 59.383 43.478 0.00 0.00 41.19 5.07
885 932 3.242772 GGCAGGAAGCTTAATTAACGAGC 60.243 47.826 0.00 0.00 44.79 5.03
887 934 4.189231 GAGGCAGGAAGCTTAATTAACGA 58.811 43.478 0.00 0.00 44.79 3.85
889 936 3.939592 ACGAGGCAGGAAGCTTAATTAAC 59.060 43.478 0.00 0.00 44.79 2.01
890 937 4.189231 GACGAGGCAGGAAGCTTAATTAA 58.811 43.478 0.00 0.00 44.79 1.40
891 938 3.431766 GGACGAGGCAGGAAGCTTAATTA 60.432 47.826 0.00 0.00 44.79 1.40
892 939 2.633488 GACGAGGCAGGAAGCTTAATT 58.367 47.619 0.00 0.00 44.79 1.40
893 940 1.134371 GGACGAGGCAGGAAGCTTAAT 60.134 52.381 0.00 0.00 44.79 1.40
908 955 0.705253 AGAAGAAGGGGAGAGGACGA 59.295 55.000 0.00 0.00 0.00 4.20
910 957 1.491668 GGAGAAGAAGGGGAGAGGAC 58.508 60.000 0.00 0.00 0.00 3.85
914 961 1.396594 GGGGGAGAAGAAGGGGAGA 59.603 63.158 0.00 0.00 0.00 3.71
948 995 2.439245 GGGAGTTGGTTGGGGTCC 59.561 66.667 0.00 0.00 0.00 4.46
949 996 2.439245 GGGGAGTTGGTTGGGGTC 59.561 66.667 0.00 0.00 0.00 4.46
950 997 3.576259 CGGGGAGTTGGTTGGGGT 61.576 66.667 0.00 0.00 0.00 4.95
1112 1409 3.080121 AAGAGGGCAGGGAGAGCG 61.080 66.667 0.00 0.00 0.00 5.03
1138 1435 3.007920 AGCAGGGAGGGAGCAGTG 61.008 66.667 0.00 0.00 0.00 3.66
1145 1442 1.074623 ATGAGAGGAGCAGGGAGGG 60.075 63.158 0.00 0.00 0.00 4.30
1184 1484 3.496131 CGGAACCGCCCAATCGTG 61.496 66.667 0.00 0.00 0.00 4.35
1204 1504 2.742372 CGTGAAACCAGAGCGGGG 60.742 66.667 0.00 0.00 40.22 5.73
1208 1508 4.430423 CGCGCGTGAAACCAGAGC 62.430 66.667 24.19 0.00 0.00 4.09
1209 1509 3.777925 CCGCGCGTGAAACCAGAG 61.778 66.667 29.95 4.86 0.00 3.35
1215 1515 3.798639 CTGCAAACCGCGCGTGAAA 62.799 57.895 29.95 11.26 46.97 2.69
1216 1516 4.306471 CTGCAAACCGCGCGTGAA 62.306 61.111 29.95 14.47 46.97 3.18
1257 1557 1.756375 CGCCGAATCGAGCCAAGAAG 61.756 60.000 3.36 0.00 0.00 2.85
1258 1558 1.809619 CGCCGAATCGAGCCAAGAA 60.810 57.895 3.36 0.00 0.00 2.52
1294 1594 2.160205 CGACGAGGGAATCCTATGCTA 58.840 52.381 0.00 0.00 45.05 3.49
1349 1649 3.894547 AACGTTGGTGGGGCTAGCG 62.895 63.158 9.00 0.00 38.18 4.26
1358 1658 4.457834 AGAAGGATAGAGAACGTTGGTG 57.542 45.455 5.00 0.00 0.00 4.17
1370 1691 7.731054 AGGTTAATACAGCTCAAGAAGGATAG 58.269 38.462 0.00 0.00 0.00 2.08
1384 1705 7.601508 ACTGGTCGTTAAAAGAGGTTAATACAG 59.398 37.037 0.00 0.00 0.00 2.74
1388 1709 7.222161 AGAACTGGTCGTTAAAAGAGGTTAAT 58.778 34.615 0.00 0.00 35.56 1.40
1389 1710 6.585416 AGAACTGGTCGTTAAAAGAGGTTAA 58.415 36.000 0.00 0.00 35.56 2.01
1390 1711 6.165700 AGAACTGGTCGTTAAAAGAGGTTA 57.834 37.500 0.00 0.00 35.56 2.85
1391 1712 5.032327 AGAACTGGTCGTTAAAAGAGGTT 57.968 39.130 0.00 0.00 35.56 3.50
1392 1713 4.684484 AGAACTGGTCGTTAAAAGAGGT 57.316 40.909 0.00 0.00 35.56 3.85
1394 1715 5.054477 TCCAAGAACTGGTCGTTAAAAGAG 58.946 41.667 0.00 0.00 46.51 2.85
1395 1716 5.026038 TCCAAGAACTGGTCGTTAAAAGA 57.974 39.130 0.00 0.00 46.51 2.52
1396 1717 5.744666 TTCCAAGAACTGGTCGTTAAAAG 57.255 39.130 0.00 0.00 46.51 2.27
1397 1718 5.449451 GCTTTCCAAGAACTGGTCGTTAAAA 60.449 40.000 0.00 0.00 46.51 1.52
1441 1766 2.173669 ATGGAATTCAGCGACGGCG 61.174 57.895 6.12 6.12 46.35 6.46
1475 1800 2.172505 ACAGTCAGTCAAATGTGGACCA 59.827 45.455 0.00 0.00 35.89 4.02
1491 1816 2.432628 CGACGCAGGGGAACAGTC 60.433 66.667 0.00 0.00 0.00 3.51
1515 1840 3.055458 GGAAGAAGGGGAGAAGAACAGAG 60.055 52.174 0.00 0.00 0.00 3.35
1519 1844 1.282447 GGGGAAGAAGGGGAGAAGAAC 59.718 57.143 0.00 0.00 0.00 3.01
1522 1847 0.550147 TGGGGGAAGAAGGGGAGAAG 60.550 60.000 0.00 0.00 0.00 2.85
1523 1848 0.103608 TTGGGGGAAGAAGGGGAGAA 60.104 55.000 0.00 0.00 0.00 2.87
1524 1849 0.103608 TTTGGGGGAAGAAGGGGAGA 60.104 55.000 0.00 0.00 0.00 3.71
1527 1852 0.032117 GGATTTGGGGGAAGAAGGGG 60.032 60.000 0.00 0.00 0.00 4.79
1535 1860 2.929964 GCAGGGTGGATTTGGGGGA 61.930 63.158 0.00 0.00 0.00 4.81
1547 1872 0.827507 AAACGCCAAGAATGCAGGGT 60.828 50.000 0.00 0.00 0.00 4.34
1548 1873 0.109132 GAAACGCCAAGAATGCAGGG 60.109 55.000 0.00 0.00 0.00 4.45
1562 1887 3.090960 CGAATTCGGGGCGGAAACG 62.091 63.158 20.16 0.00 46.72 3.60
1563 1888 1.742510 TCGAATTCGGGGCGGAAAC 60.743 57.895 26.47 0.00 40.29 2.78
1564 1889 1.742510 GTCGAATTCGGGGCGGAAA 60.743 57.895 26.47 2.69 40.29 3.13
1566 1891 4.501714 CGTCGAATTCGGGGCGGA 62.502 66.667 26.47 4.23 40.29 5.54
1569 1894 3.262686 GAGCGTCGAATTCGGGGC 61.263 66.667 26.47 26.24 40.29 5.80
1570 1895 2.954868 CGAGCGTCGAATTCGGGG 60.955 66.667 26.47 18.87 43.74 5.73
1571 1896 3.617538 GCGAGCGTCGAATTCGGG 61.618 66.667 26.47 19.20 43.74 5.14
1572 1897 1.683790 AAAGCGAGCGTCGAATTCGG 61.684 55.000 26.47 13.30 43.74 4.30
1573 1898 0.581635 CAAAGCGAGCGTCGAATTCG 60.582 55.000 21.78 21.78 43.74 3.34
1601 1926 2.283298 ACATGATAGTGAAAGCGGCAG 58.717 47.619 0.00 0.00 0.00 4.85
1612 1937 4.662468 AGCATCGACTGAACATGATAGT 57.338 40.909 0.00 0.00 0.00 2.12
1618 1943 2.167281 AGCAGTAGCATCGACTGAACAT 59.833 45.455 10.50 0.00 46.01 2.71
1620 1945 2.159310 AGAGCAGTAGCATCGACTGAAC 60.159 50.000 10.50 4.35 46.01 3.18
1622 1947 1.403323 CAGAGCAGTAGCATCGACTGA 59.597 52.381 10.50 0.00 46.01 3.41
1648 1974 2.349060 CGTCGCCGAATTCAAGACAAAA 60.349 45.455 18.66 0.00 35.63 2.44
1650 1976 0.787787 CGTCGCCGAATTCAAGACAA 59.212 50.000 18.66 0.00 35.63 3.18
1738 2081 2.265073 AAAATCGTGCGCCCGAATGG 62.265 55.000 20.72 0.00 40.73 3.16
1739 2082 0.861450 GAAAATCGTGCGCCCGAATG 60.861 55.000 20.72 0.00 40.73 2.67
1743 2086 0.444651 TTTAGAAAATCGTGCGCCCG 59.555 50.000 5.73 5.73 0.00 6.13
1770 2113 2.924290 GAGAACGGAGACAAAAGGATCG 59.076 50.000 0.00 0.00 0.00 3.69
1774 2117 1.809684 GGGAGAACGGAGACAAAAGG 58.190 55.000 0.00 0.00 0.00 3.11
1775 2118 1.429463 CGGGAGAACGGAGACAAAAG 58.571 55.000 0.00 0.00 0.00 2.27
1783 2126 2.493030 GAATCGCGGGAGAACGGA 59.507 61.111 6.13 0.00 0.00 4.69
1784 2127 2.585247 GGAATCGCGGGAGAACGG 60.585 66.667 6.13 0.00 0.00 4.44
1785 2128 2.954868 CGGAATCGCGGGAGAACG 60.955 66.667 6.13 8.10 0.00 3.95
1786 2129 1.877165 GACGGAATCGCGGGAGAAC 60.877 63.158 6.13 1.77 40.63 3.01
1795 2138 2.627863 TGCCAAATTTGACGGAATCG 57.372 45.000 19.86 1.30 43.02 3.34
2109 2467 1.153549 GCTCCCTGTGGACACGATC 60.154 63.158 0.00 0.00 35.03 3.69
2238 2596 2.644992 GCAGGCCTTTTCACCGTG 59.355 61.111 0.00 0.00 0.00 4.94
2253 2611 1.667830 CAGAGAAGAAACCGCCGCA 60.668 57.895 0.00 0.00 0.00 5.69
2280 2638 0.957395 ACGGCGTCGGTCTAGAGAAA 60.957 55.000 16.39 0.00 41.39 2.52
2393 2751 3.485394 TGCTCAGGTAAAGCAAATGTCA 58.515 40.909 0.00 0.00 46.29 3.58
2483 2841 9.673454 CAAAACCTTACTTACCAACTGAATTAC 57.327 33.333 0.00 0.00 0.00 1.89
2601 2965 5.051891 GCAAACATATTGCTCTGAAGTGT 57.948 39.130 5.94 0.00 41.87 3.55
2618 2983 6.749118 GGATATTTCAGACACATGAAGCAAAC 59.251 38.462 0.00 0.00 40.16 2.93
2636 3001 8.543774 AGTTCAGACACACATCTTAGGATATTT 58.456 33.333 0.00 0.00 0.00 1.40
2637 3002 8.083828 AGTTCAGACACACATCTTAGGATATT 57.916 34.615 0.00 0.00 0.00 1.28
2715 3080 4.823989 ACTTCCAAACAATCCTTGACTCAG 59.176 41.667 0.00 0.00 0.00 3.35
2716 3081 4.580167 CACTTCCAAACAATCCTTGACTCA 59.420 41.667 0.00 0.00 0.00 3.41
2734 3099 2.025441 TTGCCGCGCAAACACTTC 59.975 55.556 8.75 0.00 45.96 3.01
2744 3109 1.486439 ACAACTTCAAATTTGCCGCG 58.514 45.000 13.54 0.00 0.00 6.46
2764 3129 2.115427 TCCCCGATTCAGCTGACAATA 58.885 47.619 18.03 1.16 0.00 1.90
2765 3130 0.911769 TCCCCGATTCAGCTGACAAT 59.088 50.000 18.03 8.47 0.00 2.71
2766 3131 0.036388 GTCCCCGATTCAGCTGACAA 60.036 55.000 18.03 2.52 0.00 3.18
2769 3134 0.250234 CTTGTCCCCGATTCAGCTGA 59.750 55.000 13.74 13.74 0.00 4.26
2812 3177 0.030638 CCTTTTCGCACCACCAACTG 59.969 55.000 0.00 0.00 0.00 3.16
2877 3242 1.999648 TGGCAGATTGGCTTTTCTGT 58.000 45.000 11.58 0.00 44.10 3.41
2936 3301 0.404040 TAGCTGGAAACCCCACTTGG 59.596 55.000 0.00 0.00 40.82 3.61
2971 3336 9.352784 TCAACAAAACAAAAACAGAGATAACAG 57.647 29.630 0.00 0.00 0.00 3.16
3004 3369 6.573664 AAACAAAGTCAGCAGCACATTATA 57.426 33.333 0.00 0.00 0.00 0.98
3005 3370 5.458041 AAACAAAGTCAGCAGCACATTAT 57.542 34.783 0.00 0.00 0.00 1.28
3042 3407 3.286751 GCTGCGTGGAACCTGCAA 61.287 61.111 11.07 0.00 38.30 4.08
3063 3428 5.890334 CAGTTTCTGCAGGTTTGAGTAAAA 58.110 37.500 15.13 0.31 0.00 1.52
3100 3465 4.007659 ACCGAATTACATGTTCTGGTTCC 58.992 43.478 2.30 0.00 32.54 3.62
3112 3477 3.692593 TCATCGAGACAGACCGAATTACA 59.307 43.478 0.00 0.00 38.36 2.41
3331 3696 1.658114 CCGTTCGCCGAGATCCATA 59.342 57.895 0.00 0.00 39.56 2.74
3352 3717 1.870167 GCAGCTATAGTCGTCTTGCCC 60.870 57.143 0.84 0.00 0.00 5.36
3394 3759 0.109504 TTGCGAAATTTGCCGTAGCC 60.110 50.000 2.33 0.00 38.69 3.93
3400 3765 2.805099 TGGAACATTTGCGAAATTTGCC 59.195 40.909 2.33 0.00 0.00 4.52
3434 3799 3.002862 CGGGTCTCTCTGTCGATTTCTAG 59.997 52.174 0.00 0.00 0.00 2.43
3466 3831 0.392729 CTTTCTCTGCCTCCTGCCAG 60.393 60.000 0.00 0.00 40.16 4.85
3550 3919 9.787435 AGTTGAGGATTGTTACATTACAGTTTA 57.213 29.630 0.00 0.00 0.00 2.01
3551 3920 8.691661 AGTTGAGGATTGTTACATTACAGTTT 57.308 30.769 0.00 0.00 0.00 2.66
3598 3967 3.265791 GACCTGACCAGAATGTCATCAC 58.734 50.000 0.00 0.00 43.86 3.06
3631 4000 7.096436 CGTCTATCTCTTTGCACATGTGTATAC 60.096 40.741 26.01 10.66 0.00 1.47
3657 4026 2.355010 AATGGGTCAAGCTAGATGGC 57.645 50.000 0.00 0.00 0.00 4.40
3659 4028 5.188434 TCTTCAAATGGGTCAAGCTAGATG 58.812 41.667 0.00 0.00 0.00 2.90
3664 4033 4.562143 GCAAATCTTCAAATGGGTCAAGCT 60.562 41.667 0.00 0.00 0.00 3.74
3666 4035 4.687483 GTGCAAATCTTCAAATGGGTCAAG 59.313 41.667 0.00 0.00 0.00 3.02
3670 4039 3.642848 AGTGTGCAAATCTTCAAATGGGT 59.357 39.130 0.00 0.00 0.00 4.51
3696 4065 7.415989 GGGAAATGCGCAATCAAGATGATATAT 60.416 37.037 17.11 0.00 35.76 0.86
3697 4066 6.127925 GGGAAATGCGCAATCAAGATGATATA 60.128 38.462 17.11 0.00 35.76 0.86
3702 4071 2.466846 GGGAAATGCGCAATCAAGATG 58.533 47.619 17.11 0.00 0.00 2.90
3893 4262 3.876914 TCCATTTATACTCCAAGCGCAAG 59.123 43.478 11.47 3.66 43.44 4.01
3914 4283 7.223387 TCAAGTAACACTTCGTTAAACTCCTTC 59.777 37.037 0.00 0.00 41.73 3.46
3922 4291 8.085909 TCAGATCATCAAGTAACACTTCGTTAA 58.914 33.333 0.00 0.00 41.73 2.01
3923 4292 7.599171 TCAGATCATCAAGTAACACTTCGTTA 58.401 34.615 0.00 0.00 36.03 3.18
3952 4321 7.168219 TGTGCTTCATATTAGAGGTTTCAGTT 58.832 34.615 0.00 0.00 0.00 3.16
3980 4349 4.033358 CAGATCAGACCTACGAAATTGCAC 59.967 45.833 0.00 0.00 0.00 4.57
4013 4382 3.854666 CTGTGCTTCTATGCTGTAGTGT 58.145 45.455 0.00 0.00 0.00 3.55
4018 4387 2.486472 AAGCTGTGCTTCTATGCTGT 57.514 45.000 0.00 0.00 46.77 4.40
4133 4515 8.627208 TCTCTCAGTTTTCTTGCAATCTATTT 57.373 30.769 0.00 0.00 0.00 1.40
4182 4564 4.633565 GCGATTCAGAGGAAAGTGATTTCT 59.366 41.667 0.00 0.00 36.43 2.52
4233 4615 2.356313 CAAGCCTGTCGTGCTCGT 60.356 61.111 8.17 0.00 38.34 4.18
4385 4767 0.535780 CACCAGCACCAGCAAGAGAA 60.536 55.000 0.00 0.00 45.49 2.87
4396 4778 2.826777 ATAGGCACCAGCACCAGCAC 62.827 60.000 0.00 0.00 45.49 4.40
4397 4779 2.605607 ATAGGCACCAGCACCAGCA 61.606 57.895 0.00 0.00 45.49 4.41
4398 4780 2.117156 CATAGGCACCAGCACCAGC 61.117 63.158 0.00 0.00 44.61 4.85
4399 4781 0.182061 ATCATAGGCACCAGCACCAG 59.818 55.000 0.00 0.00 44.61 4.00
4400 4782 1.506025 TATCATAGGCACCAGCACCA 58.494 50.000 0.00 0.00 44.61 4.17
4433 4815 6.073548 GGAGAAACATTTCTACCATATGCTCG 60.074 42.308 6.85 0.00 46.84 5.03
4467 4854 4.432712 GCCAGTAGCATTTTTACAATGGG 58.567 43.478 0.00 0.00 42.97 4.00
4568 4974 5.641777 TTCGCGATGTAAATGATGAAGAG 57.358 39.130 10.88 0.00 0.00 2.85
4570 4976 8.766493 TTTAATTCGCGATGTAAATGATGAAG 57.234 30.769 10.88 0.00 0.00 3.02
4616 5022 5.763444 ATATAATGTCGATTTTCCTCGCG 57.237 39.130 0.00 0.00 38.52 5.87
4649 5061 9.594936 TCCTTCTTAATTAAAACTGGATTTCCA 57.405 29.630 0.00 0.00 45.30 3.53
4815 5234 8.972662 TTCCACCATTATTATCTAGATCCTCA 57.027 34.615 8.95 0.00 0.00 3.86
4943 5387 2.135933 GACACAAGACAGAACGGGAAG 58.864 52.381 0.00 0.00 0.00 3.46
4976 5420 6.381498 TTTATACTGGACACTTGGATCCAA 57.619 37.500 25.53 25.53 44.42 3.53
4980 5424 8.889717 CGTTTTATTTATACTGGACACTTGGAT 58.110 33.333 0.00 0.00 0.00 3.41
4981 5425 7.334921 CCGTTTTATTTATACTGGACACTTGGA 59.665 37.037 0.00 0.00 0.00 3.53
4983 5427 6.964934 GCCGTTTTATTTATACTGGACACTTG 59.035 38.462 0.00 0.00 0.00 3.16
4992 5441 8.931385 TTTCTCGTAGCCGTTTTATTTATACT 57.069 30.769 0.00 0.00 35.01 2.12
5024 5473 4.096681 AGACAGAGTCAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 34.60 3.10
5025 5474 4.161189 AGAGACAGAGTCAGAGAGAGAGAG 59.839 50.000 0.00 0.00 34.60 3.20
5026 5475 4.096681 AGAGACAGAGTCAGAGAGAGAGA 58.903 47.826 0.00 0.00 34.60 3.10
5027 5476 4.161189 AGAGAGACAGAGTCAGAGAGAGAG 59.839 50.000 0.00 0.00 34.60 3.20
5028 5477 4.096681 AGAGAGACAGAGTCAGAGAGAGA 58.903 47.826 0.00 0.00 34.60 3.10
5029 5478 4.437239 GAGAGAGACAGAGTCAGAGAGAG 58.563 52.174 0.00 0.00 34.60 3.20
5030 5479 3.119137 CGAGAGAGACAGAGTCAGAGAGA 60.119 52.174 0.00 0.00 34.60 3.10
5031 5480 3.190079 CGAGAGAGACAGAGTCAGAGAG 58.810 54.545 0.00 0.00 34.60 3.20
5032 5481 2.676750 GCGAGAGAGACAGAGTCAGAGA 60.677 54.545 0.00 0.00 34.60 3.10
5033 5482 1.665679 GCGAGAGAGACAGAGTCAGAG 59.334 57.143 0.00 0.00 34.60 3.35
5034 5483 1.677518 GGCGAGAGAGACAGAGTCAGA 60.678 57.143 0.00 0.00 34.60 3.27
5092 5545 1.079543 CTCCATCATCCCGATCGGC 60.080 63.158 29.12 0.00 29.21 5.54
5287 5760 1.687297 GCTGGAGGTAGTAGGGGTGC 61.687 65.000 0.00 0.00 0.00 5.01
5399 5872 3.885521 GCAGAGGCGGCAAGATGC 61.886 66.667 13.08 11.72 44.08 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.