Multiple sequence alignment - TraesCS4B01G349000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G349000 chr4B 100.000 2628 0 0 1 2628 642434007 642436634 0.000000e+00 4854.0
1 TraesCS4B01G349000 chr4D 86.456 2119 192 49 555 2625 499478790 499480861 0.000000e+00 2235.0
2 TraesCS4B01G349000 chr5A 90.087 1039 86 9 503 1534 680280557 680281585 0.000000e+00 1332.0
3 TraesCS4B01G349000 chr5A 85.796 1218 103 28 471 1648 680273035 680274222 0.000000e+00 1227.0
4 TraesCS4B01G349000 chr5A 87.454 1092 92 20 555 1611 680325134 680326215 0.000000e+00 1216.0
5 TraesCS4B01G349000 chr5A 85.812 874 82 23 1416 2271 680464941 680465790 0.000000e+00 889.0
6 TraesCS4B01G349000 chr5A 83.704 540 50 18 670 1180 680446975 680447505 2.370000e-130 475.0
7 TraesCS4B01G349000 chr5A 96.800 250 7 1 1173 1422 680458590 680458838 1.460000e-112 416.0
8 TraesCS4B01G349000 chr5A 93.204 103 6 1 372 474 680323591 680323692 1.630000e-32 150.0
9 TraesCS4B01G349000 chr7A 79.208 101 15 5 2082 2176 710372376 710372476 6.070000e-07 65.8
10 TraesCS4B01G349000 chr7A 79.208 101 15 6 2082 2176 710902017 710902117 6.070000e-07 65.8
11 TraesCS4B01G349000 chr6A 90.000 50 3 2 2105 2152 53441030 53440981 2.180000e-06 63.9
12 TraesCS4B01G349000 chr6D 86.792 53 5 2 2102 2153 57850790 57850739 1.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G349000 chr4B 642434007 642436634 2627 False 4854 4854 100.000 1 2628 1 chr4B.!!$F1 2627
1 TraesCS4B01G349000 chr4D 499478790 499480861 2071 False 2235 2235 86.456 555 2625 1 chr4D.!!$F1 2070
2 TraesCS4B01G349000 chr5A 680280557 680281585 1028 False 1332 1332 90.087 503 1534 1 chr5A.!!$F2 1031
3 TraesCS4B01G349000 chr5A 680273035 680274222 1187 False 1227 1227 85.796 471 1648 1 chr5A.!!$F1 1177
4 TraesCS4B01G349000 chr5A 680464941 680465790 849 False 889 889 85.812 1416 2271 1 chr5A.!!$F5 855
5 TraesCS4B01G349000 chr5A 680323591 680326215 2624 False 683 1216 90.329 372 1611 2 chr5A.!!$F6 1239
6 TraesCS4B01G349000 chr5A 680446975 680447505 530 False 475 475 83.704 670 1180 1 chr5A.!!$F3 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.031857 CCAAAAATGTGGCAGACGCA 59.968 50.0 0.0 0.0 44.94 5.24 F
400 401 0.032540 CAGCCCAAGGTGCTTGTTTC 59.967 55.0 0.0 0.0 39.58 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 2619 0.398381 ACTCCTCCATCTCCTCCAGC 60.398 60.0 0.0 0.0 0.00 4.85 R
2357 3813 0.384725 CGAGCACTCCGCAGTTTTTG 60.385 55.0 0.0 0.0 46.13 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.105128 GGCGATCCTCGAGTGGTG 59.895 66.667 12.31 0.00 43.74 4.17
18 19 2.415608 GGCGATCCTCGAGTGGTGA 61.416 63.158 12.31 1.24 43.74 4.02
19 20 1.226717 GCGATCCTCGAGTGGTGAC 60.227 63.158 12.31 0.00 43.74 3.67
20 21 1.062685 CGATCCTCGAGTGGTGACG 59.937 63.158 12.31 4.70 43.74 4.35
21 22 1.433879 GATCCTCGAGTGGTGACGG 59.566 63.158 12.31 0.00 0.00 4.79
22 23 1.304217 ATCCTCGAGTGGTGACGGT 60.304 57.895 12.31 0.00 0.00 4.83
23 24 1.313812 ATCCTCGAGTGGTGACGGTC 61.314 60.000 12.31 0.00 0.00 4.79
24 25 2.176055 CTCGAGTGGTGACGGTCG 59.824 66.667 3.62 0.00 38.97 4.79
25 26 2.592574 TCGAGTGGTGACGGTCGT 60.593 61.111 3.34 0.00 38.78 4.34
26 27 1.293963 CTCGAGTGGTGACGGTCGTA 61.294 60.000 3.62 0.00 38.78 3.43
27 28 0.884259 TCGAGTGGTGACGGTCGTAA 60.884 55.000 3.34 0.00 38.78 3.18
28 29 0.727122 CGAGTGGTGACGGTCGTAAC 60.727 60.000 3.34 2.54 34.47 2.50
31 32 4.565531 GGTGACGGTCGTAACCTG 57.434 61.111 19.77 0.00 44.47 4.00
32 33 1.735559 GGTGACGGTCGTAACCTGC 60.736 63.158 19.77 0.00 44.47 4.85
33 34 1.007038 GTGACGGTCGTAACCTGCA 60.007 57.895 3.34 0.00 44.04 4.41
34 35 0.598158 GTGACGGTCGTAACCTGCAA 60.598 55.000 3.34 0.00 44.04 4.08
35 36 0.598158 TGACGGTCGTAACCTGCAAC 60.598 55.000 3.34 0.00 44.04 4.17
36 37 1.611592 GACGGTCGTAACCTGCAACG 61.612 60.000 2.24 2.24 44.04 4.10
37 38 1.662446 CGGTCGTAACCTGCAACGT 60.662 57.895 8.38 0.00 44.04 3.99
38 39 1.857364 GGTCGTAACCTGCAACGTG 59.143 57.895 8.38 0.00 42.80 4.49
39 40 0.877213 GGTCGTAACCTGCAACGTGT 60.877 55.000 8.38 0.00 42.80 4.49
40 41 0.505655 GTCGTAACCTGCAACGTGTC 59.494 55.000 8.38 0.00 39.99 3.67
41 42 0.386476 TCGTAACCTGCAACGTGTCT 59.614 50.000 8.38 0.00 39.99 3.41
42 43 0.782384 CGTAACCTGCAACGTGTCTC 59.218 55.000 0.49 0.00 34.48 3.36
43 44 1.145803 GTAACCTGCAACGTGTCTCC 58.854 55.000 0.00 0.00 0.00 3.71
44 45 0.319211 TAACCTGCAACGTGTCTCCG 60.319 55.000 0.00 0.00 0.00 4.63
45 46 2.029073 CCTGCAACGTGTCTCCGT 59.971 61.111 0.00 0.00 44.23 4.69
51 52 2.355481 ACGTGTCTCCGTTTCGCC 60.355 61.111 0.00 0.00 37.96 5.54
52 53 2.049433 CGTGTCTCCGTTTCGCCT 60.049 61.111 0.00 0.00 0.00 5.52
53 54 2.372690 CGTGTCTCCGTTTCGCCTG 61.373 63.158 0.00 0.00 0.00 4.85
54 55 2.357034 TGTCTCCGTTTCGCCTGC 60.357 61.111 0.00 0.00 0.00 4.85
55 56 2.048127 GTCTCCGTTTCGCCTGCT 60.048 61.111 0.00 0.00 0.00 4.24
56 57 2.048222 TCTCCGTTTCGCCTGCTG 60.048 61.111 0.00 0.00 0.00 4.41
57 58 2.357517 CTCCGTTTCGCCTGCTGT 60.358 61.111 0.00 0.00 0.00 4.40
58 59 2.664851 TCCGTTTCGCCTGCTGTG 60.665 61.111 0.00 0.00 0.00 3.66
59 60 4.389576 CCGTTTCGCCTGCTGTGC 62.390 66.667 0.00 0.00 0.00 4.57
60 61 3.648982 CGTTTCGCCTGCTGTGCA 61.649 61.111 0.00 0.00 36.92 4.57
61 62 2.721231 GTTTCGCCTGCTGTGCAA 59.279 55.556 0.00 0.00 38.41 4.08
62 63 1.065600 GTTTCGCCTGCTGTGCAAA 59.934 52.632 0.00 0.00 38.41 3.68
63 64 0.936297 GTTTCGCCTGCTGTGCAAAG 60.936 55.000 0.00 0.00 38.41 2.77
64 65 2.682256 TTTCGCCTGCTGTGCAAAGC 62.682 55.000 22.62 22.62 43.82 3.51
65 66 4.712425 CGCCTGCTGTGCAAAGCC 62.712 66.667 26.04 9.90 42.83 4.35
66 67 4.712425 GCCTGCTGTGCAAAGCCG 62.712 66.667 26.04 19.47 42.83 5.52
67 68 4.712425 CCTGCTGTGCAAAGCCGC 62.712 66.667 26.04 2.69 42.83 6.53
68 69 3.667282 CTGCTGTGCAAAGCCGCT 61.667 61.111 26.04 0.00 42.83 5.52
69 70 3.606065 CTGCTGTGCAAAGCCGCTC 62.606 63.158 26.04 0.00 42.83 5.03
70 71 3.663176 GCTGTGCAAAGCCGCTCA 61.663 61.111 18.80 0.00 37.20 4.26
71 72 3.033184 CTGTGCAAAGCCGCTCAA 58.967 55.556 0.00 0.00 35.19 3.02
72 73 1.370900 CTGTGCAAAGCCGCTCAAC 60.371 57.895 0.00 0.00 35.19 3.18
73 74 2.427410 GTGCAAAGCCGCTCAACG 60.427 61.111 0.00 0.00 43.15 4.10
82 83 4.680237 CGCTCAACGGAGGCACCA 62.680 66.667 0.94 0.00 41.67 4.17
83 84 3.050275 GCTCAACGGAGGCACCAC 61.050 66.667 0.94 0.00 41.67 4.16
84 85 2.738521 CTCAACGGAGGCACCACG 60.739 66.667 0.94 2.76 37.51 4.94
85 86 4.308458 TCAACGGAGGCACCACGG 62.308 66.667 0.94 0.17 38.90 4.94
125 126 2.358247 GGCCTTGCCGTCGAAGAA 60.358 61.111 0.00 0.00 39.62 2.52
126 127 2.391389 GGCCTTGCCGTCGAAGAAG 61.391 63.158 0.00 0.00 39.62 2.85
133 134 4.959446 CGTCGAAGAAGGGAACGT 57.041 55.556 0.00 0.00 39.69 3.99
134 135 2.721925 CGTCGAAGAAGGGAACGTC 58.278 57.895 0.00 0.00 39.69 4.34
135 136 1.063951 CGTCGAAGAAGGGAACGTCG 61.064 60.000 0.00 0.00 44.16 5.12
136 137 0.731855 GTCGAAGAAGGGAACGTCGG 60.732 60.000 0.00 0.00 44.16 4.79
137 138 0.890542 TCGAAGAAGGGAACGTCGGA 60.891 55.000 0.00 0.00 44.16 4.55
138 139 0.456312 CGAAGAAGGGAACGTCGGAG 60.456 60.000 0.00 0.00 44.16 4.63
139 140 0.736672 GAAGAAGGGAACGTCGGAGC 60.737 60.000 0.00 0.00 44.16 4.70
140 141 2.125633 GAAGGGAACGTCGGAGCC 60.126 66.667 0.00 0.00 0.00 4.70
141 142 2.603776 AAGGGAACGTCGGAGCCT 60.604 61.111 0.00 0.00 0.00 4.58
142 143 2.837371 GAAGGGAACGTCGGAGCCTG 62.837 65.000 0.00 0.00 0.00 4.85
144 145 4.070552 GGAACGTCGGAGCCTGCT 62.071 66.667 0.00 0.00 0.00 4.24
145 146 2.811317 GAACGTCGGAGCCTGCTG 60.811 66.667 0.00 0.00 0.00 4.41
146 147 3.575351 GAACGTCGGAGCCTGCTGT 62.575 63.158 0.00 0.00 0.00 4.40
147 148 3.865929 AACGTCGGAGCCTGCTGTG 62.866 63.158 0.00 0.00 0.00 3.66
174 175 4.167597 ACGCCACCGTCCAAAAAT 57.832 50.000 0.00 0.00 46.39 1.82
175 176 1.657556 ACGCCACCGTCCAAAAATG 59.342 52.632 0.00 0.00 46.39 2.32
176 177 1.104577 ACGCCACCGTCCAAAAATGT 61.105 50.000 0.00 0.00 46.39 2.71
177 178 0.662970 CGCCACCGTCCAAAAATGTG 60.663 55.000 0.00 0.00 0.00 3.21
178 179 3.883997 CCACCGTCCAAAAATGTGG 57.116 52.632 0.00 0.00 40.39 4.17
179 180 0.319469 CCACCGTCCAAAAATGTGGC 60.319 55.000 0.00 0.00 39.95 5.01
180 181 0.387202 CACCGTCCAAAAATGTGGCA 59.613 50.000 0.00 0.00 38.68 4.92
181 182 0.673437 ACCGTCCAAAAATGTGGCAG 59.327 50.000 0.00 0.00 38.68 4.85
182 183 0.958091 CCGTCCAAAAATGTGGCAGA 59.042 50.000 0.00 0.00 38.68 4.26
183 184 1.335872 CCGTCCAAAAATGTGGCAGAC 60.336 52.381 0.00 0.00 38.68 3.51
184 185 1.662876 CGTCCAAAAATGTGGCAGACG 60.663 52.381 7.15 7.15 38.68 4.18
185 186 0.313672 TCCAAAAATGTGGCAGACGC 59.686 50.000 0.00 0.00 38.68 5.19
186 187 0.031857 CCAAAAATGTGGCAGACGCA 59.968 50.000 0.00 0.00 44.94 5.24
187 188 1.130955 CAAAAATGTGGCAGACGCAC 58.869 50.000 0.00 0.00 43.40 5.34
188 189 0.317770 AAAAATGTGGCAGACGCACG 60.318 50.000 0.00 0.00 43.40 5.34
189 190 1.163420 AAAATGTGGCAGACGCACGA 61.163 50.000 0.00 0.00 43.40 4.35
190 191 0.955428 AAATGTGGCAGACGCACGAT 60.955 50.000 0.00 0.00 43.40 3.73
191 192 0.108377 AATGTGGCAGACGCACGATA 60.108 50.000 0.00 0.00 43.40 2.92
192 193 0.528466 ATGTGGCAGACGCACGATAG 60.528 55.000 0.00 0.00 43.40 2.08
220 221 9.874205 ATTCGATAAAATGACAATGAAAACCAT 57.126 25.926 0.00 0.00 36.99 3.55
221 222 8.686397 TCGATAAAATGACAATGAAAACCATG 57.314 30.769 0.00 0.00 35.24 3.66
222 223 7.275341 TCGATAAAATGACAATGAAAACCATGC 59.725 33.333 0.00 0.00 35.24 4.06
223 224 5.945466 AAAATGACAATGAAAACCATGCC 57.055 34.783 0.00 0.00 35.24 4.40
224 225 4.620589 AATGACAATGAAAACCATGCCA 57.379 36.364 0.00 0.00 35.24 4.92
225 226 3.383620 TGACAATGAAAACCATGCCAC 57.616 42.857 0.00 0.00 35.24 5.01
226 227 2.288091 TGACAATGAAAACCATGCCACG 60.288 45.455 0.00 0.00 35.24 4.94
227 228 1.686052 ACAATGAAAACCATGCCACGT 59.314 42.857 0.00 0.00 35.24 4.49
228 229 2.288152 ACAATGAAAACCATGCCACGTC 60.288 45.455 0.00 0.00 35.24 4.34
229 230 1.614996 ATGAAAACCATGCCACGTCA 58.385 45.000 0.00 0.00 33.39 4.35
230 231 1.614996 TGAAAACCATGCCACGTCAT 58.385 45.000 0.00 0.00 0.00 3.06
231 232 1.539388 TGAAAACCATGCCACGTCATC 59.461 47.619 0.00 0.00 0.00 2.92
232 233 1.539388 GAAAACCATGCCACGTCATCA 59.461 47.619 0.00 0.00 0.00 3.07
233 234 1.614996 AAACCATGCCACGTCATCAA 58.385 45.000 0.00 0.00 0.00 2.57
234 235 1.838112 AACCATGCCACGTCATCAAT 58.162 45.000 0.00 0.00 0.00 2.57
235 236 2.708216 ACCATGCCACGTCATCAATA 57.292 45.000 0.00 0.00 0.00 1.90
236 237 2.997980 ACCATGCCACGTCATCAATAA 58.002 42.857 0.00 0.00 0.00 1.40
237 238 3.351740 ACCATGCCACGTCATCAATAAA 58.648 40.909 0.00 0.00 0.00 1.40
238 239 3.761218 ACCATGCCACGTCATCAATAAAA 59.239 39.130 0.00 0.00 0.00 1.52
239 240 4.104776 CCATGCCACGTCATCAATAAAAC 58.895 43.478 0.00 0.00 0.00 2.43
240 241 3.840890 TGCCACGTCATCAATAAAACC 57.159 42.857 0.00 0.00 0.00 3.27
241 242 3.149981 TGCCACGTCATCAATAAAACCA 58.850 40.909 0.00 0.00 0.00 3.67
242 243 3.057876 TGCCACGTCATCAATAAAACCAC 60.058 43.478 0.00 0.00 0.00 4.16
243 244 3.190535 GCCACGTCATCAATAAAACCACT 59.809 43.478 0.00 0.00 0.00 4.00
244 245 4.671766 GCCACGTCATCAATAAAACCACTC 60.672 45.833 0.00 0.00 0.00 3.51
245 246 4.454161 CCACGTCATCAATAAAACCACTCA 59.546 41.667 0.00 0.00 0.00 3.41
246 247 5.049060 CCACGTCATCAATAAAACCACTCAA 60.049 40.000 0.00 0.00 0.00 3.02
247 248 6.434596 CACGTCATCAATAAAACCACTCAAA 58.565 36.000 0.00 0.00 0.00 2.69
248 249 6.578545 CACGTCATCAATAAAACCACTCAAAG 59.421 38.462 0.00 0.00 0.00 2.77
249 250 5.569059 CGTCATCAATAAAACCACTCAAAGC 59.431 40.000 0.00 0.00 0.00 3.51
250 251 5.569059 GTCATCAATAAAACCACTCAAAGCG 59.431 40.000 0.00 0.00 0.00 4.68
251 252 4.497473 TCAATAAAACCACTCAAAGCGG 57.503 40.909 0.00 0.00 0.00 5.52
252 253 3.254657 TCAATAAAACCACTCAAAGCGGG 59.745 43.478 0.00 0.00 0.00 6.13
253 254 2.642154 TAAAACCACTCAAAGCGGGA 57.358 45.000 0.00 0.00 0.00 5.14
254 255 1.029681 AAAACCACTCAAAGCGGGAC 58.970 50.000 0.00 0.00 0.00 4.46
267 268 4.695560 GGGACGAGGGACAGTTTG 57.304 61.111 0.00 0.00 0.00 2.93
268 269 1.671379 GGGACGAGGGACAGTTTGC 60.671 63.158 0.00 0.00 0.00 3.68
269 270 1.371558 GGACGAGGGACAGTTTGCT 59.628 57.895 0.00 0.00 0.00 3.91
271 272 0.951040 GACGAGGGACAGTTTGCTGG 60.951 60.000 0.00 0.00 46.62 4.85
272 273 1.071471 CGAGGGACAGTTTGCTGGT 59.929 57.895 0.00 0.00 46.62 4.00
273 274 0.535102 CGAGGGACAGTTTGCTGGTT 60.535 55.000 0.00 0.00 46.62 3.67
274 275 1.239347 GAGGGACAGTTTGCTGGTTC 58.761 55.000 0.00 0.00 46.62 3.62
275 276 0.846693 AGGGACAGTTTGCTGGTTCT 59.153 50.000 0.00 0.00 46.62 3.01
276 277 0.954452 GGGACAGTTTGCTGGTTCTG 59.046 55.000 0.00 0.00 46.62 3.02
277 278 0.954452 GGACAGTTTGCTGGTTCTGG 59.046 55.000 0.00 0.00 46.62 3.86
278 279 1.476833 GGACAGTTTGCTGGTTCTGGA 60.477 52.381 0.00 0.00 46.62 3.86
279 280 1.876156 GACAGTTTGCTGGTTCTGGAG 59.124 52.381 0.00 0.00 46.62 3.86
280 281 1.212935 ACAGTTTGCTGGTTCTGGAGT 59.787 47.619 0.00 0.00 46.62 3.85
281 282 2.301346 CAGTTTGCTGGTTCTGGAGTT 58.699 47.619 0.00 0.00 39.01 3.01
282 283 2.033801 CAGTTTGCTGGTTCTGGAGTTG 59.966 50.000 0.00 0.00 39.01 3.16
283 284 2.092429 AGTTTGCTGGTTCTGGAGTTGA 60.092 45.455 0.00 0.00 0.00 3.18
284 285 2.687935 GTTTGCTGGTTCTGGAGTTGAA 59.312 45.455 0.00 0.00 0.00 2.69
285 286 2.260844 TGCTGGTTCTGGAGTTGAAG 57.739 50.000 0.00 0.00 0.00 3.02
286 287 1.768275 TGCTGGTTCTGGAGTTGAAGA 59.232 47.619 0.00 0.00 0.00 2.87
287 288 2.172505 TGCTGGTTCTGGAGTTGAAGAA 59.827 45.455 0.00 0.00 0.00 2.52
293 294 5.774498 GTTCTGGAGTTGAAGAACCATTT 57.226 39.130 4.56 0.00 44.24 2.32
294 295 5.763088 GTTCTGGAGTTGAAGAACCATTTC 58.237 41.667 4.56 0.00 44.24 2.17
295 296 5.310409 TCTGGAGTTGAAGAACCATTTCT 57.690 39.130 0.00 0.00 44.53 2.52
296 297 6.433847 TCTGGAGTTGAAGAACCATTTCTA 57.566 37.500 0.00 0.00 41.56 2.10
297 298 7.020827 TCTGGAGTTGAAGAACCATTTCTAT 57.979 36.000 0.00 0.00 41.56 1.98
298 299 8.146053 TCTGGAGTTGAAGAACCATTTCTATA 57.854 34.615 0.00 0.00 41.56 1.31
299 300 8.041323 TCTGGAGTTGAAGAACCATTTCTATAC 58.959 37.037 0.00 0.00 41.56 1.47
300 301 7.918076 TGGAGTTGAAGAACCATTTCTATACT 58.082 34.615 0.00 0.00 41.56 2.12
301 302 8.383175 TGGAGTTGAAGAACCATTTCTATACTT 58.617 33.333 0.00 0.00 41.56 2.24
302 303 9.232473 GGAGTTGAAGAACCATTTCTATACTTT 57.768 33.333 0.00 0.00 41.56 2.66
346 347 5.993748 TTTTTCCTTAAGGTAATGGCAGG 57.006 39.130 21.04 0.00 36.34 4.85
347 348 3.662759 TTCCTTAAGGTAATGGCAGGG 57.337 47.619 21.04 0.00 36.34 4.45
348 349 1.850345 TCCTTAAGGTAATGGCAGGGG 59.150 52.381 21.04 0.00 36.34 4.79
349 350 1.692411 CTTAAGGTAATGGCAGGGGC 58.308 55.000 0.00 0.00 40.13 5.80
350 351 1.003646 TTAAGGTAATGGCAGGGGCA 58.996 50.000 0.00 0.00 43.71 5.36
351 352 1.003646 TAAGGTAATGGCAGGGGCAA 58.996 50.000 0.00 0.00 42.43 4.52
352 353 0.614697 AAGGTAATGGCAGGGGCAAC 60.615 55.000 0.00 0.00 42.43 4.17
353 354 1.000359 GGTAATGGCAGGGGCAACT 60.000 57.895 0.00 0.00 42.43 3.16
354 355 1.322538 GGTAATGGCAGGGGCAACTG 61.323 60.000 4.29 4.29 42.43 3.16
364 365 2.887152 CAGGGGCAACTGCTATTAATCC 59.113 50.000 1.06 0.00 41.70 3.01
365 366 2.785857 AGGGGCAACTGCTATTAATCCT 59.214 45.455 1.06 0.00 41.70 3.24
366 367 2.887152 GGGGCAACTGCTATTAATCCTG 59.113 50.000 1.06 0.00 41.70 3.86
367 368 3.435026 GGGGCAACTGCTATTAATCCTGA 60.435 47.826 1.06 0.00 41.70 3.86
368 369 4.207165 GGGCAACTGCTATTAATCCTGAA 58.793 43.478 1.06 0.00 41.70 3.02
369 370 4.036852 GGGCAACTGCTATTAATCCTGAAC 59.963 45.833 1.06 0.00 41.70 3.18
370 371 4.884164 GGCAACTGCTATTAATCCTGAACT 59.116 41.667 1.06 0.00 41.70 3.01
371 372 6.055588 GGCAACTGCTATTAATCCTGAACTA 58.944 40.000 1.06 0.00 41.70 2.24
372 373 6.203723 GGCAACTGCTATTAATCCTGAACTAG 59.796 42.308 1.06 0.00 41.70 2.57
373 374 6.763610 GCAACTGCTATTAATCCTGAACTAGT 59.236 38.462 0.00 0.00 38.21 2.57
374 375 7.926555 GCAACTGCTATTAATCCTGAACTAGTA 59.073 37.037 0.00 0.00 38.21 1.82
375 376 9.469807 CAACTGCTATTAATCCTGAACTAGTAG 57.530 37.037 0.00 0.00 0.00 2.57
376 377 8.770010 ACTGCTATTAATCCTGAACTAGTAGT 57.230 34.615 0.00 0.00 30.54 2.73
400 401 0.032540 CAGCCCAAGGTGCTTGTTTC 59.967 55.000 0.00 0.00 39.58 2.78
401 402 0.396974 AGCCCAAGGTGCTTGTTTCA 60.397 50.000 0.00 0.00 39.58 2.69
426 427 5.401531 AGCAAATCTTACCGTTGAGTAGA 57.598 39.130 0.00 0.00 0.00 2.59
482 514 8.601845 AAACCAGTTTAAATATTTGAGCCAAC 57.398 30.769 11.05 6.08 0.00 3.77
534 567 3.818210 ACGACAAACATGGCAGTTCATTA 59.182 39.130 0.00 0.00 0.00 1.90
611 1974 8.504815 CAGCAATGATGTTCCAAATAGAGATAG 58.495 37.037 0.00 0.00 0.00 2.08
645 2013 4.142093 CCCCAATTTTTCTGCGATGAATCT 60.142 41.667 0.00 0.00 0.00 2.40
668 2036 7.475015 TCTAGCATACATTTTCAATTGTGCTC 58.525 34.615 16.36 0.00 30.54 4.26
680 2055 2.512692 TTGTGCTCCATTGCATACCT 57.487 45.000 0.00 0.00 45.23 3.08
690 2065 6.571150 GCTCCATTGCATACCTATTCAATTCC 60.571 42.308 0.00 0.00 29.27 3.01
691 2066 6.372104 TCCATTGCATACCTATTCAATTCCA 58.628 36.000 0.00 0.00 29.27 3.53
696 2071 1.663695 ACCTATTCAATTCCACGGCG 58.336 50.000 4.80 4.80 0.00 6.46
728 2104 1.665264 TATGCCGTCGCGACCCTTTA 61.665 55.000 31.84 16.41 38.08 1.85
747 2123 5.280215 CCTTTATGGACTTGGTCAGAGAAGT 60.280 44.000 0.14 0.00 38.35 3.01
795 2171 1.626654 CCTTCACCACTTACGCGCTG 61.627 60.000 5.73 1.02 0.00 5.18
826 2208 5.961843 GCTCACATATGTTGACGAATTCAAG 59.038 40.000 5.37 0.00 45.23 3.02
862 2244 5.553123 ACGTAGGTCCAAACATATTGACAA 58.447 37.500 0.00 0.00 0.00 3.18
987 2405 5.297776 GCTATATATACCTTGGCTTGGCATG 59.702 44.000 0.00 0.47 0.00 4.06
1007 2425 3.673902 TGTCACATTCCATCATTCACGT 58.326 40.909 0.00 0.00 0.00 4.49
1073 2493 2.171840 GGAGATATAGCCTCGCCTGAA 58.828 52.381 0.00 0.00 30.70 3.02
1089 2509 2.302445 CCTGAAATGGCATCCAAAACCA 59.698 45.455 0.00 0.00 36.95 3.67
1103 2523 1.871080 AAACCATCGAGATCCATCGC 58.129 50.000 0.00 0.00 42.43 4.58
1133 2553 0.898789 AGATATTCCGGGGCGACGAT 60.899 55.000 0.00 0.00 35.47 3.73
1166 2586 2.029844 GAAGTGCGTGGAGGTGCTC 61.030 63.158 0.00 0.00 0.00 4.26
1208 2628 4.834453 CTGCTGCCGCTGGAGGAG 62.834 72.222 10.44 3.67 36.97 3.69
1417 2837 1.001520 CGTGGTGGAGGTGTATGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
1441 2861 3.697747 CGTGACGGCCCCTGGTAA 61.698 66.667 0.00 0.00 0.00 2.85
1442 2862 2.046604 GTGACGGCCCCTGGTAAC 60.047 66.667 0.00 0.00 0.00 2.50
1515 2935 2.299867 GCTTTTGCCCTTGGAGAATGAA 59.700 45.455 0.00 0.00 40.15 2.57
1540 2967 6.486253 AACTGTGTTGTGATATAGTTGCAG 57.514 37.500 0.00 0.00 29.54 4.41
1554 2981 1.134946 GTTGCAGAAGTTTGTGCCAGT 59.865 47.619 10.92 0.00 45.84 4.00
1555 2982 2.340210 TGCAGAAGTTTGTGCCAGTA 57.660 45.000 10.92 0.00 45.84 2.74
1556 2983 1.946768 TGCAGAAGTTTGTGCCAGTAC 59.053 47.619 10.92 0.00 45.84 2.73
1611 3043 4.640771 AAGCTGTCCTTCTTGTTCCATA 57.359 40.909 0.00 0.00 0.00 2.74
1618 3050 5.014123 TGTCCTTCTTGTTCCATACCTGAAT 59.986 40.000 0.00 0.00 0.00 2.57
1619 3051 5.946377 GTCCTTCTTGTTCCATACCTGAATT 59.054 40.000 0.00 0.00 0.00 2.17
1705 3141 3.451894 CCCCCGAGCAAATGCACC 61.452 66.667 8.28 0.00 45.16 5.01
1708 3144 2.361610 CCGAGCAAATGCACCCCT 60.362 61.111 8.28 0.00 45.16 4.79
1748 3187 2.360350 ACTGTTGGGCTGCCGATG 60.360 61.111 13.40 5.07 0.00 3.84
1756 3195 2.175202 TGGGCTGCCGATGTTATTTTT 58.825 42.857 13.40 0.00 0.00 1.94
1793 3232 7.710475 TCTTTTTCCTATTTTGGTTTTCTGCAG 59.290 33.333 7.63 7.63 0.00 4.41
1834 3275 7.172703 TCCTGTCTTTTTCTTTCCGATTTCTAC 59.827 37.037 0.00 0.00 0.00 2.59
1836 3277 6.768861 TGTCTTTTTCTTTCCGATTTCTACCA 59.231 34.615 0.00 0.00 0.00 3.25
1840 3281 6.796705 TTTCTTTCCGATTTCTACCAGTTC 57.203 37.500 0.00 0.00 0.00 3.01
1948 3394 9.699410 TTCATGACTTTCCAAATAATACAGGAT 57.301 29.630 0.00 0.00 0.00 3.24
1952 3400 9.177608 TGACTTTCCAAATAATACAGGATGAAG 57.822 33.333 0.00 0.00 39.69 3.02
2008 3456 3.236816 GCAGGACGAACATGTTTCAATG 58.763 45.455 13.36 10.57 32.48 2.82
2023 3471 3.872511 TCAATGCACCATCCACATTTC 57.127 42.857 0.00 0.00 31.82 2.17
2034 3482 4.955450 CCATCCACATTTCCCAAATACTCA 59.045 41.667 0.00 0.00 0.00 3.41
2037 3485 5.389520 TCCACATTTCCCAAATACTCAACA 58.610 37.500 0.00 0.00 0.00 3.33
2041 3489 7.209475 CACATTTCCCAAATACTCAACAAACT 58.791 34.615 0.00 0.00 0.00 2.66
2253 3704 5.056480 TGTCACGAATGTTTTCTCACTCAT 58.944 37.500 0.00 0.00 0.00 2.90
2257 3708 6.073602 TCACGAATGTTTTCTCACTCATGAAG 60.074 38.462 0.00 0.00 33.30 3.02
2356 3812 3.806667 GCATGGCCCCAGCTCTCT 61.807 66.667 0.00 0.00 39.73 3.10
2357 3813 2.509916 CATGGCCCCAGCTCTCTC 59.490 66.667 0.00 0.00 39.73 3.20
2359 3815 1.617536 ATGGCCCCAGCTCTCTCAA 60.618 57.895 0.00 0.00 39.73 3.02
2360 3816 1.210204 ATGGCCCCAGCTCTCTCAAA 61.210 55.000 0.00 0.00 39.73 2.69
2361 3817 1.380302 GGCCCCAGCTCTCTCAAAA 59.620 57.895 0.00 0.00 39.73 2.44
2369 3825 1.070758 AGCTCTCTCAAAAACTGCGGA 59.929 47.619 0.00 0.00 0.00 5.54
2374 3830 0.947244 CTCAAAAACTGCGGAGTGCT 59.053 50.000 11.44 0.00 46.63 4.40
2403 3859 1.229529 CTATCCCCCGCCCCTATGT 60.230 63.158 0.00 0.00 0.00 2.29
2421 3877 3.060479 TGTGGGGAATATAGGAGCTGT 57.940 47.619 0.00 0.00 0.00 4.40
2429 3888 1.880271 TATAGGAGCTGTCGAGACCG 58.120 55.000 0.00 0.00 37.07 4.79
2448 3907 0.456628 GAAGGTACCTCCGTGCTCTC 59.543 60.000 16.64 2.19 41.99 3.20
2454 3913 1.289066 CCTCCGTGCTCTCGTTTCA 59.711 57.895 0.00 0.00 0.00 2.69
2482 3946 1.526455 AAAAAGGTACCGCCGTGCA 60.526 52.632 6.18 0.00 43.70 4.57
2494 3958 0.809636 GCCGTGCAATAAATTGGGCC 60.810 55.000 0.00 0.00 36.94 5.80
2505 3969 3.756082 AAATTGGGCCCTAGTTGATCA 57.244 42.857 25.70 0.00 0.00 2.92
2506 3970 3.979501 AATTGGGCCCTAGTTGATCAT 57.020 42.857 25.70 0.00 0.00 2.45
2511 3975 2.173569 GGGCCCTAGTTGATCATGAACT 59.826 50.000 17.04 1.07 37.43 3.01
2540 4004 1.517694 CAATGGCCGCATGTGCTTC 60.518 57.895 0.00 0.00 39.32 3.86
2547 4011 2.882876 GCATGTGCTTCCAGCCAG 59.117 61.111 0.00 0.00 41.51 4.85
2557 4021 4.028490 CCAGCCAGTACCGCCCAA 62.028 66.667 0.00 0.00 0.00 4.12
2558 4022 2.033448 CAGCCAGTACCGCCCAAA 59.967 61.111 0.00 0.00 0.00 3.28
2559 4023 2.040544 CAGCCAGTACCGCCCAAAG 61.041 63.158 0.00 0.00 0.00 2.77
2564 4028 1.539827 CCAGTACCGCCCAAAGAAAAG 59.460 52.381 0.00 0.00 0.00 2.27
2566 4030 2.882137 CAGTACCGCCCAAAGAAAAGAA 59.118 45.455 0.00 0.00 0.00 2.52
2567 4031 3.316868 CAGTACCGCCCAAAGAAAAGAAA 59.683 43.478 0.00 0.00 0.00 2.52
2568 4032 3.955551 AGTACCGCCCAAAGAAAAGAAAA 59.044 39.130 0.00 0.00 0.00 2.29
2569 4033 3.897141 ACCGCCCAAAGAAAAGAAAAA 57.103 38.095 0.00 0.00 0.00 1.94
2591 4055 1.543871 GGGTCAAGAACGGCAACCTAA 60.544 52.381 0.00 0.00 0.00 2.69
2596 4060 3.886505 TCAAGAACGGCAACCTAATTTGT 59.113 39.130 0.00 0.00 0.00 2.83
2611 4075 5.067283 CCTAATTTGTTACCCAGGAATTCCG 59.933 44.000 18.82 13.17 42.08 4.30
2614 4078 2.785562 TGTTACCCAGGAATTCCGTTG 58.214 47.619 18.82 12.34 42.08 4.10
2616 4080 2.483014 TACCCAGGAATTCCGTTGTG 57.517 50.000 18.82 11.27 42.08 3.33
2625 4089 4.007659 GGAATTCCGTTGTGACCATAAGT 58.992 43.478 9.17 0.00 0.00 2.24
2626 4090 4.457949 GGAATTCCGTTGTGACCATAAGTT 59.542 41.667 9.17 0.00 0.00 2.66
2627 4091 5.048294 GGAATTCCGTTGTGACCATAAGTTT 60.048 40.000 9.17 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.313812 ACCGTCACCACTCGAGGATC 61.314 60.000 18.41 0.21 0.00 3.36
4 5 1.304217 ACCGTCACCACTCGAGGAT 60.304 57.895 18.41 0.00 0.00 3.24
5 6 1.970114 GACCGTCACCACTCGAGGA 60.970 63.158 18.41 0.64 0.00 3.71
6 7 2.567049 GACCGTCACCACTCGAGG 59.433 66.667 18.41 2.79 0.00 4.63
7 8 1.293963 TACGACCGTCACCACTCGAG 61.294 60.000 11.84 11.84 0.00 4.04
8 9 0.884259 TTACGACCGTCACCACTCGA 60.884 55.000 0.00 0.00 0.00 4.04
9 10 0.727122 GTTACGACCGTCACCACTCG 60.727 60.000 0.00 0.00 0.00 4.18
10 11 0.387750 GGTTACGACCGTCACCACTC 60.388 60.000 17.87 0.00 40.89 3.51
11 12 1.662044 GGTTACGACCGTCACCACT 59.338 57.895 17.87 0.00 40.89 4.00
12 13 4.250080 GGTTACGACCGTCACCAC 57.750 61.111 17.87 4.01 40.89 4.16
20 21 0.877213 ACACGTTGCAGGTTACGACC 60.877 55.000 15.09 0.00 46.92 4.79
21 22 0.505655 GACACGTTGCAGGTTACGAC 59.494 55.000 15.09 3.33 40.03 4.34
22 23 0.386476 AGACACGTTGCAGGTTACGA 59.614 50.000 15.09 0.00 40.03 3.43
23 24 0.782384 GAGACACGTTGCAGGTTACG 59.218 55.000 7.09 7.09 43.08 3.18
24 25 1.145803 GGAGACACGTTGCAGGTTAC 58.854 55.000 0.00 0.00 0.00 2.50
25 26 0.319211 CGGAGACACGTTGCAGGTTA 60.319 55.000 0.00 0.00 0.00 2.85
26 27 1.594293 CGGAGACACGTTGCAGGTT 60.594 57.895 0.00 0.00 0.00 3.50
27 28 2.029073 CGGAGACACGTTGCAGGT 59.971 61.111 0.00 0.00 0.00 4.00
28 29 2.029073 ACGGAGACACGTTGCAGG 59.971 61.111 0.00 0.00 46.25 4.85
35 36 2.049433 AGGCGAAACGGAGACACG 60.049 61.111 0.00 0.00 40.31 4.49
36 37 2.668280 GCAGGCGAAACGGAGACAC 61.668 63.158 0.00 0.00 0.00 3.67
37 38 2.357034 GCAGGCGAAACGGAGACA 60.357 61.111 0.00 0.00 0.00 3.41
38 39 2.048127 AGCAGGCGAAACGGAGAC 60.048 61.111 0.00 0.00 0.00 3.36
39 40 2.048222 CAGCAGGCGAAACGGAGA 60.048 61.111 0.00 0.00 0.00 3.71
40 41 2.357517 ACAGCAGGCGAAACGGAG 60.358 61.111 0.00 0.00 0.00 4.63
41 42 2.664851 CACAGCAGGCGAAACGGA 60.665 61.111 0.00 0.00 0.00 4.69
42 43 4.389576 GCACAGCAGGCGAAACGG 62.390 66.667 0.00 0.00 0.00 4.44
43 44 2.660553 TTTGCACAGCAGGCGAAACG 62.661 55.000 0.00 0.00 40.61 3.60
44 45 0.936297 CTTTGCACAGCAGGCGAAAC 60.936 55.000 0.00 0.00 40.61 2.78
45 46 1.359833 CTTTGCACAGCAGGCGAAA 59.640 52.632 0.00 0.00 40.61 3.46
46 47 3.033184 CTTTGCACAGCAGGCGAA 58.967 55.556 0.00 0.00 40.61 4.70
47 48 3.663176 GCTTTGCACAGCAGGCGA 61.663 61.111 19.77 0.00 40.61 5.54
48 49 4.712425 GGCTTTGCACAGCAGGCG 62.712 66.667 25.18 0.00 42.10 5.52
49 50 4.712425 CGGCTTTGCACAGCAGGC 62.712 66.667 25.18 11.73 42.10 4.85
50 51 4.712425 GCGGCTTTGCACAGCAGG 62.712 66.667 25.18 17.07 42.10 4.85
51 52 3.606065 GAGCGGCTTTGCACAGCAG 62.606 63.158 25.18 22.06 42.10 4.24
52 53 3.663176 GAGCGGCTTTGCACAGCA 61.663 61.111 25.18 0.00 42.10 4.41
53 54 3.198236 TTGAGCGGCTTTGCACAGC 62.198 57.895 16.63 16.63 36.80 4.40
54 55 1.370900 GTTGAGCGGCTTTGCACAG 60.371 57.895 2.97 0.00 36.80 3.66
55 56 2.721231 GTTGAGCGGCTTTGCACA 59.279 55.556 2.97 0.00 37.31 4.57
56 57 2.427410 CGTTGAGCGGCTTTGCAC 60.427 61.111 2.97 0.00 37.31 4.57
65 66 4.680237 TGGTGCCTCCGTTGAGCG 62.680 66.667 0.00 0.00 39.52 5.03
66 67 3.050275 GTGGTGCCTCCGTTGAGC 61.050 66.667 0.00 0.00 39.52 4.26
67 68 2.738521 CGTGGTGCCTCCGTTGAG 60.739 66.667 0.00 0.00 39.52 3.02
68 69 4.308458 CCGTGGTGCCTCCGTTGA 62.308 66.667 0.00 0.00 39.52 3.18
108 109 2.358247 TTCTTCGACGGCAAGGCC 60.358 61.111 0.00 0.00 46.75 5.19
109 110 2.391389 CCTTCTTCGACGGCAAGGC 61.391 63.158 7.25 0.00 0.00 4.35
110 111 1.741770 CCCTTCTTCGACGGCAAGG 60.742 63.158 11.38 11.38 35.99 3.61
111 112 0.320421 TTCCCTTCTTCGACGGCAAG 60.320 55.000 0.00 0.00 0.00 4.01
112 113 0.601841 GTTCCCTTCTTCGACGGCAA 60.602 55.000 0.00 0.00 0.00 4.52
113 114 1.005394 GTTCCCTTCTTCGACGGCA 60.005 57.895 0.00 0.00 0.00 5.69
114 115 2.092882 CGTTCCCTTCTTCGACGGC 61.093 63.158 0.00 0.00 0.00 5.68
115 116 0.731855 GACGTTCCCTTCTTCGACGG 60.732 60.000 0.00 0.00 37.99 4.79
116 117 1.063951 CGACGTTCCCTTCTTCGACG 61.064 60.000 0.00 0.00 39.43 5.12
117 118 0.731855 CCGACGTTCCCTTCTTCGAC 60.732 60.000 0.00 0.00 0.00 4.20
118 119 0.890542 TCCGACGTTCCCTTCTTCGA 60.891 55.000 0.00 0.00 0.00 3.71
119 120 0.456312 CTCCGACGTTCCCTTCTTCG 60.456 60.000 0.00 0.00 0.00 3.79
120 121 0.736672 GCTCCGACGTTCCCTTCTTC 60.737 60.000 0.00 0.00 0.00 2.87
121 122 1.292541 GCTCCGACGTTCCCTTCTT 59.707 57.895 0.00 0.00 0.00 2.52
122 123 2.647158 GGCTCCGACGTTCCCTTCT 61.647 63.158 0.00 0.00 0.00 2.85
123 124 2.125633 GGCTCCGACGTTCCCTTC 60.126 66.667 0.00 0.00 0.00 3.46
124 125 2.603776 AGGCTCCGACGTTCCCTT 60.604 61.111 0.00 0.00 0.00 3.95
125 126 3.382832 CAGGCTCCGACGTTCCCT 61.383 66.667 0.00 0.00 0.00 4.20
127 128 4.070552 AGCAGGCTCCGACGTTCC 62.071 66.667 0.00 0.00 0.00 3.62
128 129 2.811317 CAGCAGGCTCCGACGTTC 60.811 66.667 0.00 0.00 0.00 3.95
129 130 3.616721 ACAGCAGGCTCCGACGTT 61.617 61.111 0.00 0.00 0.00 3.99
130 131 4.363990 CACAGCAGGCTCCGACGT 62.364 66.667 0.00 0.00 0.00 4.34
153 154 3.851845 TTTGGACGGTGGCGTCGAG 62.852 63.158 0.00 0.00 39.56 4.04
154 155 2.919960 TTTTTGGACGGTGGCGTCGA 62.920 55.000 0.00 0.00 39.56 4.20
155 156 1.847890 ATTTTTGGACGGTGGCGTCG 61.848 55.000 0.00 0.00 39.56 5.12
156 157 0.386731 CATTTTTGGACGGTGGCGTC 60.387 55.000 0.00 0.00 38.09 5.19
157 158 1.104577 ACATTTTTGGACGGTGGCGT 61.105 50.000 0.00 0.00 0.00 5.68
158 159 0.662970 CACATTTTTGGACGGTGGCG 60.663 55.000 0.00 0.00 0.00 5.69
159 160 0.319469 CCACATTTTTGGACGGTGGC 60.319 55.000 0.00 0.00 42.11 5.01
160 161 3.883997 CCACATTTTTGGACGGTGG 57.116 52.632 0.00 0.00 42.57 4.61
161 162 0.387202 TGCCACATTTTTGGACGGTG 59.613 50.000 0.00 0.00 39.24 4.94
162 163 0.673437 CTGCCACATTTTTGGACGGT 59.327 50.000 0.00 0.00 39.24 4.83
163 164 0.958091 TCTGCCACATTTTTGGACGG 59.042 50.000 0.00 0.00 39.24 4.79
164 165 1.662876 CGTCTGCCACATTTTTGGACG 60.663 52.381 0.00 0.00 39.24 4.79
165 166 1.930371 GCGTCTGCCACATTTTTGGAC 60.930 52.381 0.00 0.00 39.24 4.02
166 167 0.313672 GCGTCTGCCACATTTTTGGA 59.686 50.000 0.00 0.00 39.24 3.53
167 168 0.031857 TGCGTCTGCCACATTTTTGG 59.968 50.000 0.00 0.00 41.78 3.28
168 169 1.130955 GTGCGTCTGCCACATTTTTG 58.869 50.000 0.00 0.00 41.78 2.44
169 170 0.317770 CGTGCGTCTGCCACATTTTT 60.318 50.000 0.00 0.00 41.78 1.94
170 171 1.163420 TCGTGCGTCTGCCACATTTT 61.163 50.000 0.00 0.00 41.78 1.82
171 172 0.955428 ATCGTGCGTCTGCCACATTT 60.955 50.000 0.00 0.00 41.78 2.32
172 173 0.108377 TATCGTGCGTCTGCCACATT 60.108 50.000 0.00 0.00 41.78 2.71
173 174 0.528466 CTATCGTGCGTCTGCCACAT 60.528 55.000 0.00 0.00 41.78 3.21
174 175 1.153842 CTATCGTGCGTCTGCCACA 60.154 57.895 0.00 0.00 41.78 4.17
175 176 0.099968 TACTATCGTGCGTCTGCCAC 59.900 55.000 0.00 0.00 41.78 5.01
176 177 1.029681 ATACTATCGTGCGTCTGCCA 58.970 50.000 0.00 0.00 41.78 4.92
177 178 2.052157 GAATACTATCGTGCGTCTGCC 58.948 52.381 0.00 0.00 41.78 4.85
178 179 1.709203 CGAATACTATCGTGCGTCTGC 59.291 52.381 0.00 0.00 38.01 4.26
179 180 3.249013 TCGAATACTATCGTGCGTCTG 57.751 47.619 0.00 0.00 43.19 3.51
180 181 5.602458 TTATCGAATACTATCGTGCGTCT 57.398 39.130 0.00 0.00 43.19 4.18
181 182 6.664978 TTTTATCGAATACTATCGTGCGTC 57.335 37.500 0.00 0.00 43.19 5.19
182 183 6.859508 TCATTTTATCGAATACTATCGTGCGT 59.140 34.615 0.00 0.00 43.19 5.24
183 184 7.149031 TGTCATTTTATCGAATACTATCGTGCG 60.149 37.037 0.00 0.00 43.19 5.34
184 185 8.003508 TGTCATTTTATCGAATACTATCGTGC 57.996 34.615 0.00 0.00 43.19 5.34
194 195 9.874205 ATGGTTTTCATTGTCATTTTATCGAAT 57.126 25.926 0.00 0.00 30.55 3.34
195 196 9.138062 CATGGTTTTCATTGTCATTTTATCGAA 57.862 29.630 0.00 0.00 32.92 3.71
196 197 7.275341 GCATGGTTTTCATTGTCATTTTATCGA 59.725 33.333 0.00 0.00 32.92 3.59
197 198 7.393327 GCATGGTTTTCATTGTCATTTTATCG 58.607 34.615 0.00 0.00 32.92 2.92
198 199 7.333921 TGGCATGGTTTTCATTGTCATTTTATC 59.666 33.333 0.00 0.00 32.92 1.75
199 200 7.119553 GTGGCATGGTTTTCATTGTCATTTTAT 59.880 33.333 0.00 0.00 32.92 1.40
200 201 6.426328 GTGGCATGGTTTTCATTGTCATTTTA 59.574 34.615 0.00 0.00 32.92 1.52
201 202 5.239087 GTGGCATGGTTTTCATTGTCATTTT 59.761 36.000 0.00 0.00 32.92 1.82
202 203 4.756135 GTGGCATGGTTTTCATTGTCATTT 59.244 37.500 0.00 0.00 32.92 2.32
203 204 4.317488 GTGGCATGGTTTTCATTGTCATT 58.683 39.130 0.00 0.00 32.92 2.57
204 205 3.614630 CGTGGCATGGTTTTCATTGTCAT 60.615 43.478 0.00 0.00 32.92 3.06
205 206 2.288091 CGTGGCATGGTTTTCATTGTCA 60.288 45.455 0.00 0.00 32.92 3.58
206 207 2.288152 ACGTGGCATGGTTTTCATTGTC 60.288 45.455 12.05 0.00 32.92 3.18
207 208 1.686052 ACGTGGCATGGTTTTCATTGT 59.314 42.857 12.05 0.00 32.92 2.71
208 209 2.288091 TGACGTGGCATGGTTTTCATTG 60.288 45.455 12.05 0.00 32.92 2.82
209 210 1.959985 TGACGTGGCATGGTTTTCATT 59.040 42.857 12.05 0.00 32.92 2.57
210 211 1.614996 TGACGTGGCATGGTTTTCAT 58.385 45.000 12.05 0.00 36.31 2.57
211 212 1.539388 GATGACGTGGCATGGTTTTCA 59.461 47.619 12.05 5.94 0.00 2.69
212 213 1.539388 TGATGACGTGGCATGGTTTTC 59.461 47.619 12.05 0.00 0.00 2.29
213 214 1.614996 TGATGACGTGGCATGGTTTT 58.385 45.000 12.05 0.00 0.00 2.43
214 215 1.614996 TTGATGACGTGGCATGGTTT 58.385 45.000 12.05 0.00 0.00 3.27
215 216 1.838112 ATTGATGACGTGGCATGGTT 58.162 45.000 12.05 0.00 0.00 3.67
216 217 2.708216 TATTGATGACGTGGCATGGT 57.292 45.000 12.05 2.45 0.00 3.55
217 218 4.104776 GTTTTATTGATGACGTGGCATGG 58.895 43.478 12.05 0.00 0.00 3.66
218 219 4.104776 GGTTTTATTGATGACGTGGCATG 58.895 43.478 4.87 4.87 0.00 4.06
219 220 3.761218 TGGTTTTATTGATGACGTGGCAT 59.239 39.130 0.00 0.00 0.00 4.40
220 221 3.057876 GTGGTTTTATTGATGACGTGGCA 60.058 43.478 0.00 0.00 0.00 4.92
221 222 3.190535 AGTGGTTTTATTGATGACGTGGC 59.809 43.478 0.00 0.00 0.00 5.01
222 223 4.454161 TGAGTGGTTTTATTGATGACGTGG 59.546 41.667 0.00 0.00 0.00 4.94
223 224 5.605564 TGAGTGGTTTTATTGATGACGTG 57.394 39.130 0.00 0.00 0.00 4.49
224 225 6.627395 TTTGAGTGGTTTTATTGATGACGT 57.373 33.333 0.00 0.00 0.00 4.34
225 226 5.569059 GCTTTGAGTGGTTTTATTGATGACG 59.431 40.000 0.00 0.00 0.00 4.35
226 227 5.569059 CGCTTTGAGTGGTTTTATTGATGAC 59.431 40.000 0.00 0.00 0.00 3.06
227 228 5.335583 CCGCTTTGAGTGGTTTTATTGATGA 60.336 40.000 0.00 0.00 40.92 2.92
228 229 4.858692 CCGCTTTGAGTGGTTTTATTGATG 59.141 41.667 0.00 0.00 40.92 3.07
229 230 4.082245 CCCGCTTTGAGTGGTTTTATTGAT 60.082 41.667 6.77 0.00 44.26 2.57
230 231 3.254657 CCCGCTTTGAGTGGTTTTATTGA 59.745 43.478 6.77 0.00 44.26 2.57
231 232 3.254657 TCCCGCTTTGAGTGGTTTTATTG 59.745 43.478 6.77 0.00 44.26 1.90
232 233 3.254903 GTCCCGCTTTGAGTGGTTTTATT 59.745 43.478 6.77 0.00 44.26 1.40
233 234 2.817844 GTCCCGCTTTGAGTGGTTTTAT 59.182 45.455 6.77 0.00 44.26 1.40
234 235 2.223745 GTCCCGCTTTGAGTGGTTTTA 58.776 47.619 6.77 0.00 44.26 1.52
235 236 1.029681 GTCCCGCTTTGAGTGGTTTT 58.970 50.000 6.77 0.00 44.26 2.43
236 237 1.164041 CGTCCCGCTTTGAGTGGTTT 61.164 55.000 6.77 0.00 44.26 3.27
237 238 1.597027 CGTCCCGCTTTGAGTGGTT 60.597 57.895 6.77 0.00 44.26 3.67
238 239 2.030562 CGTCCCGCTTTGAGTGGT 59.969 61.111 6.77 0.00 44.26 4.16
239 240 1.738099 CTCGTCCCGCTTTGAGTGG 60.738 63.158 0.54 0.54 45.32 4.00
240 241 1.738099 CCTCGTCCCGCTTTGAGTG 60.738 63.158 0.00 0.00 0.00 3.51
241 242 2.657237 CCTCGTCCCGCTTTGAGT 59.343 61.111 0.00 0.00 0.00 3.41
242 243 2.125512 CCCTCGTCCCGCTTTGAG 60.126 66.667 0.00 0.00 0.00 3.02
243 244 2.602267 TCCCTCGTCCCGCTTTGA 60.602 61.111 0.00 0.00 0.00 2.69
244 245 2.434359 GTCCCTCGTCCCGCTTTG 60.434 66.667 0.00 0.00 0.00 2.77
245 246 2.920912 TGTCCCTCGTCCCGCTTT 60.921 61.111 0.00 0.00 0.00 3.51
246 247 3.382832 CTGTCCCTCGTCCCGCTT 61.383 66.667 0.00 0.00 0.00 4.68
247 248 4.680537 ACTGTCCCTCGTCCCGCT 62.681 66.667 0.00 0.00 0.00 5.52
248 249 3.236003 AAACTGTCCCTCGTCCCGC 62.236 63.158 0.00 0.00 0.00 6.13
249 250 1.374252 CAAACTGTCCCTCGTCCCG 60.374 63.158 0.00 0.00 0.00 5.14
250 251 1.671379 GCAAACTGTCCCTCGTCCC 60.671 63.158 0.00 0.00 0.00 4.46
251 252 0.951040 CAGCAAACTGTCCCTCGTCC 60.951 60.000 0.00 0.00 39.22 4.79
252 253 0.951040 CCAGCAAACTGTCCCTCGTC 60.951 60.000 0.00 0.00 42.81 4.20
253 254 1.071471 CCAGCAAACTGTCCCTCGT 59.929 57.895 0.00 0.00 42.81 4.18
254 255 0.535102 AACCAGCAAACTGTCCCTCG 60.535 55.000 0.00 0.00 42.81 4.63
255 256 1.202818 AGAACCAGCAAACTGTCCCTC 60.203 52.381 0.00 0.00 42.81 4.30
256 257 0.846693 AGAACCAGCAAACTGTCCCT 59.153 50.000 0.00 0.00 42.81 4.20
257 258 0.954452 CAGAACCAGCAAACTGTCCC 59.046 55.000 0.00 0.00 42.81 4.46
258 259 0.954452 CCAGAACCAGCAAACTGTCC 59.046 55.000 0.00 0.00 42.81 4.02
259 260 1.876156 CTCCAGAACCAGCAAACTGTC 59.124 52.381 0.00 0.00 42.81 3.51
260 261 1.212935 ACTCCAGAACCAGCAAACTGT 59.787 47.619 0.00 0.00 42.81 3.55
261 262 1.972872 ACTCCAGAACCAGCAAACTG 58.027 50.000 0.00 0.00 44.05 3.16
262 263 2.092429 TCAACTCCAGAACCAGCAAACT 60.092 45.455 0.00 0.00 0.00 2.66
263 264 2.297701 TCAACTCCAGAACCAGCAAAC 58.702 47.619 0.00 0.00 0.00 2.93
264 265 2.727123 TCAACTCCAGAACCAGCAAA 57.273 45.000 0.00 0.00 0.00 3.68
265 266 2.172505 TCTTCAACTCCAGAACCAGCAA 59.827 45.455 0.00 0.00 0.00 3.91
266 267 1.768275 TCTTCAACTCCAGAACCAGCA 59.232 47.619 0.00 0.00 0.00 4.41
267 268 2.550180 GTTCTTCAACTCCAGAACCAGC 59.450 50.000 1.30 0.00 42.11 4.85
271 272 5.532779 AGAAATGGTTCTTCAACTCCAGAAC 59.467 40.000 3.85 3.85 41.55 3.01
272 273 5.694995 AGAAATGGTTCTTCAACTCCAGAA 58.305 37.500 0.00 0.00 41.55 3.02
273 274 5.310409 AGAAATGGTTCTTCAACTCCAGA 57.690 39.130 0.00 0.00 41.55 3.86
274 275 8.043710 AGTATAGAAATGGTTCTTCAACTCCAG 58.956 37.037 0.00 0.00 41.55 3.86
275 276 7.918076 AGTATAGAAATGGTTCTTCAACTCCA 58.082 34.615 0.00 0.00 41.55 3.86
276 277 8.794335 AAGTATAGAAATGGTTCTTCAACTCC 57.206 34.615 0.00 0.00 41.55 3.85
324 325 4.775253 CCCTGCCATTACCTTAAGGAAAAA 59.225 41.667 28.52 17.70 38.94 1.94
325 326 4.349365 CCCTGCCATTACCTTAAGGAAAA 58.651 43.478 28.52 20.05 38.94 2.29
326 327 3.309556 CCCCTGCCATTACCTTAAGGAAA 60.310 47.826 28.52 12.55 38.94 3.13
327 328 2.243736 CCCCTGCCATTACCTTAAGGAA 59.756 50.000 28.52 17.00 38.94 3.36
328 329 1.850345 CCCCTGCCATTACCTTAAGGA 59.150 52.381 28.52 6.97 38.94 3.36
329 330 1.754201 GCCCCTGCCATTACCTTAAGG 60.754 57.143 20.42 20.42 42.17 2.69
330 331 1.064017 TGCCCCTGCCATTACCTTAAG 60.064 52.381 0.00 0.00 36.33 1.85
331 332 1.003646 TGCCCCTGCCATTACCTTAA 58.996 50.000 0.00 0.00 36.33 1.85
332 333 1.003646 TTGCCCCTGCCATTACCTTA 58.996 50.000 0.00 0.00 36.33 2.69
333 334 0.614697 GTTGCCCCTGCCATTACCTT 60.615 55.000 0.00 0.00 36.33 3.50
334 335 1.000359 GTTGCCCCTGCCATTACCT 60.000 57.895 0.00 0.00 36.33 3.08
335 336 1.000359 AGTTGCCCCTGCCATTACC 60.000 57.895 0.00 0.00 36.33 2.85
336 337 2.192605 CAGTTGCCCCTGCCATTAC 58.807 57.895 0.00 0.00 36.33 1.89
337 338 4.762016 CAGTTGCCCCTGCCATTA 57.238 55.556 0.00 0.00 36.33 1.90
343 344 2.887152 GGATTAATAGCAGTTGCCCCTG 59.113 50.000 0.00 0.00 43.38 4.45
344 345 2.785857 AGGATTAATAGCAGTTGCCCCT 59.214 45.455 0.00 0.00 43.38 4.79
345 346 2.887152 CAGGATTAATAGCAGTTGCCCC 59.113 50.000 0.00 0.00 43.38 5.80
346 347 3.820557 TCAGGATTAATAGCAGTTGCCC 58.179 45.455 0.00 0.00 43.38 5.36
347 348 4.884164 AGTTCAGGATTAATAGCAGTTGCC 59.116 41.667 0.00 0.00 43.38 4.52
348 349 6.763610 ACTAGTTCAGGATTAATAGCAGTTGC 59.236 38.462 0.00 0.00 42.49 4.17
349 350 9.469807 CTACTAGTTCAGGATTAATAGCAGTTG 57.530 37.037 0.00 0.00 0.00 3.16
350 351 9.203163 ACTACTAGTTCAGGATTAATAGCAGTT 57.797 33.333 0.00 0.00 0.00 3.16
351 352 8.770010 ACTACTAGTTCAGGATTAATAGCAGT 57.230 34.615 0.00 0.00 0.00 4.40
352 353 9.469807 CAACTACTAGTTCAGGATTAATAGCAG 57.530 37.037 0.00 0.00 36.03 4.24
353 354 8.421784 CCAACTACTAGTTCAGGATTAATAGCA 58.578 37.037 0.00 0.00 36.03 3.49
354 355 8.422566 ACCAACTACTAGTTCAGGATTAATAGC 58.577 37.037 0.00 0.00 36.03 2.97
355 356 9.968870 GACCAACTACTAGTTCAGGATTAATAG 57.031 37.037 0.00 0.00 36.03 1.73
356 357 9.483489 TGACCAACTACTAGTTCAGGATTAATA 57.517 33.333 0.00 0.00 36.03 0.98
357 358 8.375493 TGACCAACTACTAGTTCAGGATTAAT 57.625 34.615 0.00 0.00 36.03 1.40
358 359 7.578955 GCTGACCAACTACTAGTTCAGGATTAA 60.579 40.741 17.52 0.00 36.03 1.40
359 360 6.127423 GCTGACCAACTACTAGTTCAGGATTA 60.127 42.308 17.52 0.00 36.03 1.75
360 361 5.337652 GCTGACCAACTACTAGTTCAGGATT 60.338 44.000 17.52 0.00 36.03 3.01
361 362 4.160626 GCTGACCAACTACTAGTTCAGGAT 59.839 45.833 17.52 0.00 36.03 3.24
362 363 3.510360 GCTGACCAACTACTAGTTCAGGA 59.490 47.826 17.52 0.00 36.03 3.86
363 364 3.368531 GGCTGACCAACTACTAGTTCAGG 60.369 52.174 17.52 10.58 36.03 3.86
364 365 3.368531 GGGCTGACCAACTACTAGTTCAG 60.369 52.174 13.41 13.41 36.03 3.02
365 366 2.565834 GGGCTGACCAACTACTAGTTCA 59.434 50.000 0.00 0.00 36.03 3.18
366 367 3.248495 GGGCTGACCAACTACTAGTTC 57.752 52.381 0.00 0.00 36.03 3.01
389 390 5.473039 AGATTTGCTATTGAAACAAGCACC 58.527 37.500 0.00 0.00 45.41 5.01
400 401 6.422776 ACTCAACGGTAAGATTTGCTATTG 57.577 37.500 0.00 0.00 0.00 1.90
401 402 7.553334 TCTACTCAACGGTAAGATTTGCTATT 58.447 34.615 0.00 0.00 0.00 1.73
482 514 3.659183 ATCACCAATCCTCCTTTCCAG 57.341 47.619 0.00 0.00 0.00 3.86
574 1937 3.712733 ACATCATTGCTGGCCCAATTATT 59.287 39.130 0.00 0.00 33.35 1.40
582 1945 0.896923 TTGGAACATCATTGCTGGCC 59.103 50.000 0.00 0.00 39.30 5.36
611 1974 7.435192 CGCAGAAAAATTGGGGAATTTATACTC 59.565 37.037 0.00 0.00 32.51 2.59
645 2013 6.152492 TGGAGCACAATTGAAAATGTATGCTA 59.848 34.615 13.59 0.00 31.36 3.49
668 2036 6.449698 GTGGAATTGAATAGGTATGCAATGG 58.550 40.000 4.26 0.00 40.27 3.16
680 2055 1.098712 GCCCGCCGTGGAATTGAATA 61.099 55.000 0.00 0.00 42.00 1.75
728 2104 3.260380 CAGACTTCTCTGACCAAGTCCAT 59.740 47.826 16.05 2.67 46.68 3.41
795 2171 5.805486 TCGTCAACATATGTGAGCTTTACTC 59.195 40.000 9.63 0.00 46.45 2.59
862 2244 3.009143 GGTTGGTGATTTCTAGAGTGGGT 59.991 47.826 0.00 0.00 0.00 4.51
915 2322 6.375455 AGAAAGCTTCAATATTGATCACCGTT 59.625 34.615 18.61 11.08 37.00 4.44
987 2405 3.935203 AGACGTGAATGATGGAATGTGAC 59.065 43.478 0.00 0.00 0.00 3.67
1007 2425 1.076350 GGGATGGGAGAGCTAGCTAGA 59.924 57.143 25.15 1.41 0.00 2.43
1073 2493 2.428171 CTCGATGGTTTTGGATGCCATT 59.572 45.455 0.00 0.00 42.48 3.16
1089 2509 1.207848 CGACGCGATGGATCTCGAT 59.792 57.895 15.93 0.00 41.12 3.59
1103 2523 2.050351 AATATCTCCGCGCCGACG 60.050 61.111 0.00 0.00 44.07 5.12
1199 2619 0.398381 ACTCCTCCATCTCCTCCAGC 60.398 60.000 0.00 0.00 0.00 4.85
1208 2628 1.481871 TGTACCCGAACTCCTCCATC 58.518 55.000 0.00 0.00 0.00 3.51
1238 2658 2.362120 AGCAGCCACATGAAGCCC 60.362 61.111 0.00 0.00 0.00 5.19
1417 2837 4.148825 GGGCCGTCACGCTCTCAT 62.149 66.667 0.00 0.00 0.00 2.90
1440 2860 2.745152 CGGTCTTGAAGGTGACCTTGTT 60.745 50.000 23.60 0.00 44.82 2.83
1441 2861 1.202651 CGGTCTTGAAGGTGACCTTGT 60.203 52.381 23.60 0.00 44.82 3.16
1442 2862 1.512926 CGGTCTTGAAGGTGACCTTG 58.487 55.000 23.60 7.78 44.82 3.61
1472 2892 1.202510 GCAGCATCGAAGGTCTCAGAT 60.203 52.381 0.00 0.00 0.00 2.90
1484 2904 1.804326 GGCAAAAGCAGCAGCATCG 60.804 57.895 3.17 0.00 45.49 3.84
1515 2935 8.040727 TCTGCAACTATATCACAACACAGTTAT 58.959 33.333 0.00 0.00 0.00 1.89
1540 2967 2.688364 GCAGTACTGGCACAAACTTC 57.312 50.000 23.95 0.00 38.70 3.01
1554 2981 7.506114 CAAGGGTTTATAAGTATCTGGCAGTA 58.494 38.462 15.27 3.59 0.00 2.74
1555 2982 6.357367 CAAGGGTTTATAAGTATCTGGCAGT 58.643 40.000 15.27 4.62 0.00 4.40
1556 2983 5.239525 GCAAGGGTTTATAAGTATCTGGCAG 59.760 44.000 8.58 8.58 0.00 4.85
1611 3043 7.287696 ACTGGACACTTTTATTCAAATTCAGGT 59.712 33.333 0.00 0.00 0.00 4.00
1705 3141 0.676151 GCACAAAGAGCTCCTGAGGG 60.676 60.000 17.90 5.80 0.00 4.30
1708 3144 1.004560 CGGCACAAAGAGCTCCTGA 60.005 57.895 17.90 0.00 0.00 3.86
1730 3168 2.045926 ATCGGCAGCCCAACAGTC 60.046 61.111 5.63 0.00 0.00 3.51
1802 3243 5.335191 CGGAAAGAAAAAGACAGGAAGGATG 60.335 44.000 0.00 0.00 0.00 3.51
1967 3415 4.190772 TGCATCGCAGAAATGTTCATCTA 58.809 39.130 0.00 0.00 43.58 1.98
2008 3456 1.265236 TTGGGAAATGTGGATGGTGC 58.735 50.000 0.00 0.00 0.00 5.01
2233 3684 5.596268 TCATGAGTGAGAAAACATTCGTG 57.404 39.130 0.00 0.00 41.54 4.35
2240 3691 5.049198 TGTGCATCTTCATGAGTGAGAAAAC 60.049 40.000 0.00 0.99 35.39 2.43
2328 3784 3.038280 GCCATGCCACGTGTTGAA 58.962 55.556 15.65 0.00 0.00 2.69
2339 3795 3.771110 GAGAGAGCTGGGGCCATGC 62.771 68.421 4.39 9.08 39.73 4.06
2356 3812 0.944386 GAGCACTCCGCAGTTTTTGA 59.056 50.000 0.00 0.00 46.13 2.69
2357 3813 0.384725 CGAGCACTCCGCAGTTTTTG 60.385 55.000 0.00 0.00 46.13 2.44
2359 3815 0.814010 AACGAGCACTCCGCAGTTTT 60.814 50.000 0.00 0.00 46.13 2.43
2360 3816 1.227556 AACGAGCACTCCGCAGTTT 60.228 52.632 0.00 0.00 46.13 2.66
2361 3817 1.956170 CAACGAGCACTCCGCAGTT 60.956 57.895 0.00 0.00 46.13 3.16
2369 3825 1.949847 ATAGCGAGCCAACGAGCACT 61.950 55.000 0.00 0.00 35.09 4.40
2374 3830 2.792947 GGGGATAGCGAGCCAACGA 61.793 63.158 2.82 0.00 30.17 3.85
2403 3859 2.158370 TCGACAGCTCCTATATTCCCCA 60.158 50.000 0.00 0.00 0.00 4.96
2409 3865 2.038689 TCGGTCTCGACAGCTCCTATAT 59.961 50.000 0.00 0.00 40.88 0.86
2413 3869 1.303398 TTCGGTCTCGACAGCTCCT 60.303 57.895 0.00 0.00 45.92 3.69
2414 3870 1.137825 CTTCGGTCTCGACAGCTCC 59.862 63.158 0.00 0.00 45.92 4.70
2416 3872 0.322277 TACCTTCGGTCTCGACAGCT 60.322 55.000 0.00 0.00 45.92 4.24
2417 3873 0.179169 GTACCTTCGGTCTCGACAGC 60.179 60.000 0.00 0.00 45.92 4.40
2421 3877 0.393537 GGAGGTACCTTCGGTCTCGA 60.394 60.000 17.53 0.00 44.44 4.04
2429 3888 0.456628 GAGAGCACGGAGGTACCTTC 59.543 60.000 17.53 13.98 36.31 3.46
2438 3897 0.103390 TTGTGAAACGAGAGCACGGA 59.897 50.000 0.00 0.00 42.39 4.69
2467 3926 0.036199 TTATTGCACGGCGGTACCTT 60.036 50.000 13.24 0.00 35.61 3.50
2469 3928 1.018910 ATTTATTGCACGGCGGTACC 58.981 50.000 13.24 0.16 0.00 3.34
2470 3929 2.446282 CAATTTATTGCACGGCGGTAC 58.554 47.619 13.24 0.00 0.00 3.34
2471 3930 1.402259 CCAATTTATTGCACGGCGGTA 59.598 47.619 13.24 0.00 36.48 4.02
2473 3932 0.527385 CCCAATTTATTGCACGGCGG 60.527 55.000 13.24 0.66 36.48 6.13
2474 3933 1.145162 GCCCAATTTATTGCACGGCG 61.145 55.000 4.80 4.80 34.55 6.46
2482 3946 5.776358 TGATCAACTAGGGCCCAATTTATT 58.224 37.500 27.56 2.98 0.00 1.40
2494 3958 4.125703 GGCAGAGTTCATGATCAACTAGG 58.874 47.826 0.00 0.00 34.10 3.02
2540 4004 3.561120 TTTGGGCGGTACTGGCTGG 62.561 63.158 25.70 0.00 34.31 4.85
2547 4011 3.994204 TTTCTTTTCTTTGGGCGGTAC 57.006 42.857 0.00 0.00 0.00 3.34
2566 4030 1.770294 TGCCGTTCTTGACCCTTTTT 58.230 45.000 0.00 0.00 0.00 1.94
2567 4031 1.407618 GTTGCCGTTCTTGACCCTTTT 59.592 47.619 0.00 0.00 0.00 2.27
2568 4032 1.029681 GTTGCCGTTCTTGACCCTTT 58.970 50.000 0.00 0.00 0.00 3.11
2569 4033 0.822121 GGTTGCCGTTCTTGACCCTT 60.822 55.000 0.00 0.00 0.00 3.95
2570 4034 1.228154 GGTTGCCGTTCTTGACCCT 60.228 57.895 0.00 0.00 0.00 4.34
2571 4035 0.035739 TAGGTTGCCGTTCTTGACCC 59.964 55.000 0.00 0.00 0.00 4.46
2572 4036 1.886886 TTAGGTTGCCGTTCTTGACC 58.113 50.000 0.00 0.00 0.00 4.02
2573 4037 4.226761 CAAATTAGGTTGCCGTTCTTGAC 58.773 43.478 0.00 0.00 0.00 3.18
2574 4038 3.886505 ACAAATTAGGTTGCCGTTCTTGA 59.113 39.130 0.00 0.00 31.29 3.02
2575 4039 4.237349 ACAAATTAGGTTGCCGTTCTTG 57.763 40.909 0.00 0.00 31.29 3.02
2591 4055 4.042271 ACGGAATTCCTGGGTAACAAAT 57.958 40.909 22.05 0.00 39.74 2.32
2596 4060 2.372504 TCACAACGGAATTCCTGGGTAA 59.627 45.455 22.05 0.72 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.