Multiple sequence alignment - TraesCS4B01G348800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G348800 chr4B 100.000 6732 0 0 1 6732 642197074 642190343 0.000000e+00 12432.0
1 TraesCS4B01G348800 chr4B 97.313 335 8 1 1 335 431710143 431710476 9.800000e-158 568.0
2 TraesCS4B01G348800 chr4B 89.407 236 23 2 6497 6732 32262161 32262394 5.100000e-76 296.0
3 TraesCS4B01G348800 chr4B 82.278 237 34 3 5295 5523 642085194 642084958 1.480000e-46 198.0
4 TraesCS4B01G348800 chr5A 93.166 4785 244 35 1534 6270 680118004 680113255 0.000000e+00 6948.0
5 TraesCS4B01G348800 chr5A 93.160 731 35 7 822 1537 680118948 680118218 0.000000e+00 1059.0
6 TraesCS4B01G348800 chr5A 74.041 443 69 15 5359 5773 680074049 680073625 9.100000e-29 139.0
7 TraesCS4B01G348800 chr5A 88.679 53 5 1 6272 6324 112098706 112098655 5.640000e-06 63.9
8 TraesCS4B01G348800 chr4D 95.862 2175 69 9 1443 3606 499394253 499392089 0.000000e+00 3498.0
9 TraesCS4B01G348800 chr4D 94.519 2226 84 15 4133 6345 499391310 499389110 0.000000e+00 3400.0
10 TraesCS4B01G348800 chr4D 91.433 607 25 12 802 1386 499395290 499394689 0.000000e+00 808.0
11 TraesCS4B01G348800 chr4D 88.419 544 32 19 3616 4131 499391935 499391395 1.590000e-175 627.0
12 TraesCS4B01G348800 chr4D 85.579 423 30 13 6311 6724 499389183 499388783 1.350000e-111 414.0
13 TraesCS4B01G348800 chr4D 86.850 327 24 9 332 650 499395713 499395398 1.390000e-91 348.0
14 TraesCS4B01G348800 chr4D 74.550 723 111 42 5314 5996 499290104 499289415 1.450000e-61 248.0
15 TraesCS4B01G348800 chr6B 97.910 335 6 1 1 335 562491858 562491525 4.530000e-161 579.0
16 TraesCS4B01G348800 chr6B 97.313 335 8 1 1 335 155954808 155954475 9.800000e-158 568.0
17 TraesCS4B01G348800 chr6B 97.313 335 8 1 1 335 631755796 631756129 9.800000e-158 568.0
18 TraesCS4B01G348800 chr6B 97.033 337 9 1 1 337 558605445 558605110 3.520000e-157 566.0
19 TraesCS4B01G348800 chr6B 88.525 244 24 3 6491 6732 260601315 260601074 6.600000e-75 292.0
20 TraesCS4B01G348800 chr6B 91.304 46 4 0 6261 6306 83203159 83203204 5.640000e-06 63.9
21 TraesCS4B01G348800 chr7B 97.313 335 8 1 1 335 72601548 72601881 9.800000e-158 568.0
22 TraesCS4B01G348800 chr7B 95.690 348 13 2 1 348 110997332 110997677 5.900000e-155 558.0
23 TraesCS4B01G348800 chr7B 89.076 238 25 1 6495 6732 654124487 654124251 1.840000e-75 294.0
24 TraesCS4B01G348800 chr7B 89.030 237 24 2 6496 6732 394827495 394827261 6.600000e-75 292.0
25 TraesCS4B01G348800 chr7B 94.000 100 6 0 1425 1524 539218282 539218381 1.170000e-32 152.0
26 TraesCS4B01G348800 chr2B 96.491 342 10 2 1 341 679096814 679096474 1.270000e-156 564.0
27 TraesCS4B01G348800 chr2B 89.076 238 22 4 6496 6732 570064065 570063831 6.600000e-75 292.0
28 TraesCS4B01G348800 chr2B 88.462 52 5 1 6262 6312 73105470 73105419 2.030000e-05 62.1
29 TraesCS4B01G348800 chr1B 97.024 336 9 1 1 336 316807074 316807408 1.270000e-156 564.0
30 TraesCS4B01G348800 chr1B 82.667 75 9 4 6272 6343 645386105 645386032 5.640000e-06 63.9
31 TraesCS4B01G348800 chr4A 89.744 234 23 1 6499 6732 655516971 655516739 1.420000e-76 298.0
32 TraesCS4B01G348800 chr4A 91.111 45 4 0 6267 6311 420017644 420017600 2.030000e-05 62.1
33 TraesCS4B01G348800 chr2D 89.451 237 23 2 6496 6732 437960401 437960167 1.420000e-76 298.0
34 TraesCS4B01G348800 chr2D 86.364 66 2 3 6278 6343 380408393 380408335 1.570000e-06 65.8
35 TraesCS4B01G348800 chr5B 89.700 233 22 2 6495 6726 558705220 558705451 5.100000e-76 296.0
36 TraesCS4B01G348800 chr5B 93.617 47 2 1 6267 6312 11034196 11034150 1.210000e-07 69.4
37 TraesCS4B01G348800 chr5B 90.000 40 4 0 6306 6345 296251533 296251572 1.200000e-02 52.8
38 TraesCS4B01G348800 chr3A 95.876 97 4 0 1426 1522 589797203 589797299 2.510000e-34 158.0
39 TraesCS4B01G348800 chr7A 92.523 107 7 1 1425 1530 581374248 581374354 1.170000e-32 152.0
40 TraesCS4B01G348800 chr6D 89.908 109 11 0 1421 1529 41640910 41640802 2.530000e-29 141.0
41 TraesCS4B01G348800 chr6D 92.784 97 7 0 1426 1522 358980109 358980205 2.530000e-29 141.0
42 TraesCS4B01G348800 chr6D 91.228 57 5 0 6278 6334 55937595 55937651 2.010000e-10 78.7
43 TraesCS4B01G348800 chr3B 92.784 97 7 0 1426 1522 752373428 752373332 2.530000e-29 141.0
44 TraesCS4B01G348800 chr3B 88.462 52 5 1 6260 6311 797643334 797643284 2.030000e-05 62.1
45 TraesCS4B01G348800 chr1D 88.889 108 12 0 1426 1533 392556677 392556570 4.240000e-27 134.0
46 TraesCS4B01G348800 chr3D 87.611 113 13 1 1417 1529 305448670 305448559 5.480000e-26 130.0
47 TraesCS4B01G348800 chr5D 85.000 60 6 3 6249 6306 310276610 310276668 2.620000e-04 58.4
48 TraesCS4B01G348800 chr1A 96.774 31 1 0 6318 6348 529125168 529125138 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G348800 chr4B 642190343 642197074 6731 True 12432.000000 12432 100.000000 1 6732 1 chr4B.!!$R2 6731
1 TraesCS4B01G348800 chr5A 680113255 680118948 5693 True 4003.500000 6948 93.163000 822 6270 2 chr5A.!!$R3 5448
2 TraesCS4B01G348800 chr4D 499388783 499395713 6930 True 1515.833333 3498 90.443667 332 6724 6 chr4D.!!$R2 6392
3 TraesCS4B01G348800 chr4D 499289415 499290104 689 True 248.000000 248 74.550000 5314 5996 1 chr4D.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 478 0.105142 AGGGTCTACCGCCATACCAT 60.105 55.000 0.00 0.0 46.96 3.55 F
561 568 0.265553 ATGCCCATTATTGCCCACCT 59.734 50.000 0.00 0.0 0.00 4.00 F
800 808 0.841289 TTCTTTGAGGGGGACACGTT 59.159 50.000 0.00 0.0 0.00 3.99 F
1291 1317 0.903236 GCCTTCTTCTCCCGTTACCT 59.097 55.000 0.00 0.0 0.00 3.08 F
1976 2626 0.458025 GCCTTCCGTGTCTCCTAACG 60.458 60.000 0.00 0.0 39.48 3.18 F
3074 3724 0.192566 ACCAGGTCAACAGGGAGGTA 59.807 55.000 0.00 0.0 0.00 3.08 F
3391 4041 1.554160 ACCAGCAGATCCAAGACTCAG 59.446 52.381 0.00 0.0 0.00 3.35 F
4851 5774 0.940126 AAAGAGCGCAATATCGGCAG 59.060 50.000 11.47 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1291 1317 0.037590 AAGCACAATTCTACGGCCCA 59.962 50.000 0.00 0.00 0.00 5.36 R
1572 2203 1.066430 ACCAGCTTACCCATACACGTG 60.066 52.381 15.48 15.48 0.00 4.49 R
1825 2472 1.067635 GGCTGCATGTTGGTACCAAAG 60.068 52.381 28.67 21.50 37.70 2.77 R
2906 3556 3.254060 GTCGTTGTGCATCACTATGACT 58.746 45.455 19.11 0.00 45.40 3.41 R
3946 4774 0.313672 TTCAGCCAAACAACGGATGC 59.686 50.000 0.00 0.00 39.83 3.91 R
3957 4785 1.340889 GCCTGAACAATGTTCAGCCAA 59.659 47.619 37.25 14.83 43.33 4.52 R
5335 6258 0.249868 CCACGTCTTCAAGCTGACCA 60.250 55.000 0.00 0.00 0.00 4.02 R
6662 7655 0.180406 AACAAGTTGTGCCCGACTCT 59.820 50.000 9.79 0.00 34.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.678260 AATGATACTTGACATTAGAAAAGCTCT 57.322 29.630 0.00 0.00 35.39 4.09
28 29 9.678260 ATGATACTTGACATTAGAAAAGCTCTT 57.322 29.630 0.00 0.00 35.41 2.85
31 32 7.371126 ACTTGACATTAGAAAAGCTCTTAGC 57.629 36.000 0.00 0.00 42.84 3.09
32 33 6.936900 ACTTGACATTAGAAAAGCTCTTAGCA 59.063 34.615 1.22 0.00 45.56 3.49
33 34 7.445402 ACTTGACATTAGAAAAGCTCTTAGCAA 59.555 33.333 1.22 0.00 45.56 3.91
34 35 7.744087 TGACATTAGAAAAGCTCTTAGCAAA 57.256 32.000 1.22 0.00 45.56 3.68
35 36 7.584987 TGACATTAGAAAAGCTCTTAGCAAAC 58.415 34.615 1.22 0.00 45.56 2.93
36 37 6.603095 ACATTAGAAAAGCTCTTAGCAAACG 58.397 36.000 1.22 0.00 45.56 3.60
37 38 6.426937 ACATTAGAAAAGCTCTTAGCAAACGA 59.573 34.615 1.22 0.00 45.56 3.85
38 39 6.854496 TTAGAAAAGCTCTTAGCAAACGAA 57.146 33.333 1.22 0.00 45.56 3.85
39 40 5.096954 AGAAAAGCTCTTAGCAAACGAAC 57.903 39.130 1.22 0.00 45.56 3.95
40 41 4.816925 AGAAAAGCTCTTAGCAAACGAACT 59.183 37.500 1.22 0.00 45.56 3.01
41 42 5.989777 AGAAAAGCTCTTAGCAAACGAACTA 59.010 36.000 1.22 0.00 45.56 2.24
42 43 6.651225 AGAAAAGCTCTTAGCAAACGAACTAT 59.349 34.615 1.22 0.00 45.56 2.12
43 44 7.817962 AGAAAAGCTCTTAGCAAACGAACTATA 59.182 33.333 1.22 0.00 45.56 1.31
44 45 6.889019 AAGCTCTTAGCAAACGAACTATAC 57.111 37.500 1.22 0.00 45.56 1.47
45 46 5.035443 AGCTCTTAGCAAACGAACTATACG 58.965 41.667 1.22 0.00 45.56 3.06
46 47 5.032863 GCTCTTAGCAAACGAACTATACGA 58.967 41.667 0.00 0.00 41.89 3.43
47 48 5.686397 GCTCTTAGCAAACGAACTATACGAT 59.314 40.000 0.00 0.00 41.89 3.73
48 49 6.129404 GCTCTTAGCAAACGAACTATACGATC 60.129 42.308 0.00 0.00 41.89 3.69
49 50 7.024340 TCTTAGCAAACGAACTATACGATCT 57.976 36.000 0.00 0.00 34.70 2.75
50 51 7.478322 TCTTAGCAAACGAACTATACGATCTT 58.522 34.615 0.00 0.00 34.70 2.40
51 52 5.950965 AGCAAACGAACTATACGATCTTG 57.049 39.130 0.00 0.00 34.70 3.02
52 53 5.408356 AGCAAACGAACTATACGATCTTGT 58.592 37.500 0.00 0.00 34.70 3.16
53 54 5.288712 AGCAAACGAACTATACGATCTTGTG 59.711 40.000 0.00 0.00 34.70 3.33
54 55 5.481472 CAAACGAACTATACGATCTTGTGC 58.519 41.667 0.00 0.00 34.70 4.57
55 56 4.634184 ACGAACTATACGATCTTGTGCT 57.366 40.909 0.00 0.00 34.70 4.40
56 57 5.746307 ACGAACTATACGATCTTGTGCTA 57.254 39.130 0.00 0.00 34.70 3.49
57 58 6.315091 ACGAACTATACGATCTTGTGCTAT 57.685 37.500 0.00 0.00 34.70 2.97
58 59 6.143496 ACGAACTATACGATCTTGTGCTATG 58.857 40.000 0.00 0.00 34.70 2.23
59 60 5.059832 CGAACTATACGATCTTGTGCTATGC 59.940 44.000 0.00 0.00 0.00 3.14
60 61 5.713792 ACTATACGATCTTGTGCTATGCT 57.286 39.130 0.00 0.00 0.00 3.79
61 62 6.090483 ACTATACGATCTTGTGCTATGCTT 57.910 37.500 0.00 0.00 0.00 3.91
62 63 7.215719 ACTATACGATCTTGTGCTATGCTTA 57.784 36.000 0.00 0.00 0.00 3.09
63 64 7.309177 ACTATACGATCTTGTGCTATGCTTAG 58.691 38.462 2.28 2.28 0.00 2.18
64 65 3.722147 ACGATCTTGTGCTATGCTTAGG 58.278 45.455 8.57 0.00 0.00 2.69
65 66 3.384789 ACGATCTTGTGCTATGCTTAGGA 59.615 43.478 8.57 2.81 0.00 2.94
66 67 4.039730 ACGATCTTGTGCTATGCTTAGGAT 59.960 41.667 8.57 2.69 0.00 3.24
67 68 4.993584 CGATCTTGTGCTATGCTTAGGATT 59.006 41.667 8.57 0.00 0.00 3.01
68 69 5.107182 CGATCTTGTGCTATGCTTAGGATTG 60.107 44.000 8.57 0.00 0.00 2.67
69 70 4.454678 TCTTGTGCTATGCTTAGGATTGG 58.545 43.478 8.57 1.27 0.00 3.16
70 71 3.213206 TGTGCTATGCTTAGGATTGGG 57.787 47.619 8.57 0.00 0.00 4.12
71 72 2.509548 TGTGCTATGCTTAGGATTGGGT 59.490 45.455 8.57 0.00 0.00 4.51
72 73 3.142174 GTGCTATGCTTAGGATTGGGTC 58.858 50.000 8.57 0.00 0.00 4.46
73 74 3.048600 TGCTATGCTTAGGATTGGGTCT 58.951 45.455 8.57 0.00 0.00 3.85
74 75 3.459598 TGCTATGCTTAGGATTGGGTCTT 59.540 43.478 8.57 0.00 0.00 3.01
75 76 3.817647 GCTATGCTTAGGATTGGGTCTTG 59.182 47.826 8.57 0.00 0.00 3.02
76 77 4.687219 GCTATGCTTAGGATTGGGTCTTGT 60.687 45.833 8.57 0.00 0.00 3.16
77 78 3.350219 TGCTTAGGATTGGGTCTTGTC 57.650 47.619 0.00 0.00 0.00 3.18
78 79 2.026262 TGCTTAGGATTGGGTCTTGTCC 60.026 50.000 0.00 0.00 0.00 4.02
79 80 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
80 81 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
81 82 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
82 83 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
83 84 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
84 85 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
85 86 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
86 87 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
87 88 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
88 89 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
89 90 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
90 91 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
91 92 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
92 93 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
93 94 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
94 95 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
95 96 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
96 97 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
97 98 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
98 99 7.616528 TGTCCATCACATCATTCTCCTAATA 57.383 36.000 0.00 0.00 0.00 0.98
99 100 8.033178 TGTCCATCACATCATTCTCCTAATAA 57.967 34.615 0.00 0.00 0.00 1.40
100 101 8.663167 TGTCCATCACATCATTCTCCTAATAAT 58.337 33.333 0.00 0.00 0.00 1.28
101 102 8.944029 GTCCATCACATCATTCTCCTAATAATG 58.056 37.037 0.00 0.00 34.96 1.90
102 103 8.663167 TCCATCACATCATTCTCCTAATAATGT 58.337 33.333 0.00 0.00 35.16 2.71
103 104 8.727910 CCATCACATCATTCTCCTAATAATGTG 58.272 37.037 7.42 7.42 42.27 3.21
108 109 9.512588 ACATCATTCTCCTAATAATGTGATTCC 57.487 33.333 0.00 0.00 35.16 3.01
109 110 8.663025 CATCATTCTCCTAATAATGTGATTCCG 58.337 37.037 0.00 0.00 35.16 4.30
110 111 7.735917 TCATTCTCCTAATAATGTGATTCCGT 58.264 34.615 0.00 0.00 35.16 4.69
111 112 8.210946 TCATTCTCCTAATAATGTGATTCCGTT 58.789 33.333 0.00 0.00 35.16 4.44
112 113 9.489084 CATTCTCCTAATAATGTGATTCCGTTA 57.511 33.333 0.00 0.00 0.00 3.18
114 115 9.706691 TTCTCCTAATAATGTGATTCCGTTATC 57.293 33.333 0.00 0.00 0.00 1.75
115 116 8.866093 TCTCCTAATAATGTGATTCCGTTATCA 58.134 33.333 0.00 0.00 32.29 2.15
116 117 9.489084 CTCCTAATAATGTGATTCCGTTATCAA 57.511 33.333 0.00 0.00 36.37 2.57
121 122 8.675705 ATAATGTGATTCCGTTATCAATGACA 57.324 30.769 0.00 0.00 36.37 3.58
122 123 7.572523 AATGTGATTCCGTTATCAATGACAT 57.427 32.000 0.00 0.00 38.14 3.06
123 124 6.603237 TGTGATTCCGTTATCAATGACATC 57.397 37.500 0.00 0.00 36.37 3.06
124 125 5.527214 TGTGATTCCGTTATCAATGACATCC 59.473 40.000 0.00 0.00 36.37 3.51
125 126 5.760253 GTGATTCCGTTATCAATGACATCCT 59.240 40.000 0.00 0.00 36.37 3.24
126 127 6.929049 GTGATTCCGTTATCAATGACATCCTA 59.071 38.462 0.00 0.00 36.37 2.94
127 128 7.604164 GTGATTCCGTTATCAATGACATCCTAT 59.396 37.037 0.00 0.00 36.37 2.57
128 129 7.603784 TGATTCCGTTATCAATGACATCCTATG 59.396 37.037 0.00 0.00 31.82 2.23
140 141 2.707791 ACATCCTATGTCCATGGTCAGG 59.292 50.000 16.79 13.14 39.92 3.86
141 142 2.866923 TCCTATGTCCATGGTCAGGA 57.133 50.000 16.79 15.06 0.00 3.86
142 143 3.129262 TCCTATGTCCATGGTCAGGAA 57.871 47.619 16.79 4.87 36.80 3.36
143 144 3.459828 TCCTATGTCCATGGTCAGGAAA 58.540 45.455 16.79 1.08 36.80 3.13
144 145 3.199946 TCCTATGTCCATGGTCAGGAAAC 59.800 47.826 16.79 4.30 36.80 2.78
145 146 2.514458 ATGTCCATGGTCAGGAAACC 57.486 50.000 16.79 0.00 36.80 3.27
157 158 7.931015 TGGTCAGGAAACCATAACTATCTAT 57.069 36.000 0.00 0.00 44.40 1.98
158 159 8.331931 TGGTCAGGAAACCATAACTATCTATT 57.668 34.615 0.00 0.00 44.40 1.73
159 160 8.210946 TGGTCAGGAAACCATAACTATCTATTG 58.789 37.037 0.00 0.00 44.40 1.90
160 161 8.429641 GGTCAGGAAACCATAACTATCTATTGA 58.570 37.037 0.00 0.00 39.27 2.57
168 169 9.698309 AACCATAACTATCTATTGATCAACGAG 57.302 33.333 11.07 11.28 34.32 4.18
169 170 7.815068 ACCATAACTATCTATTGATCAACGAGC 59.185 37.037 11.07 0.00 34.32 5.03
170 171 8.031864 CCATAACTATCTATTGATCAACGAGCT 58.968 37.037 11.07 5.61 34.32 4.09
173 174 7.753309 ACTATCTATTGATCAACGAGCTAGT 57.247 36.000 20.08 20.08 34.32 2.57
174 175 7.812648 ACTATCTATTGATCAACGAGCTAGTC 58.187 38.462 20.08 0.00 34.32 2.59
175 176 6.641169 ATCTATTGATCAACGAGCTAGTCA 57.359 37.500 11.07 0.00 0.00 3.41
176 177 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
177 178 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
178 179 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
179 180 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
180 181 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
181 182 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
182 183 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
183 184 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
184 185 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
185 186 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
186 187 2.289547 CGAGCTAGTCAACTAGAGGCTC 59.710 54.545 19.03 16.73 46.80 4.70
187 188 3.283751 GAGCTAGTCAACTAGAGGCTCA 58.716 50.000 18.26 1.80 46.80 4.26
188 189 3.020984 AGCTAGTCAACTAGAGGCTCAC 58.979 50.000 18.26 4.72 46.80 3.51
189 190 3.020984 GCTAGTCAACTAGAGGCTCACT 58.979 50.000 18.26 12.32 46.80 3.41
190 191 4.080243 AGCTAGTCAACTAGAGGCTCACTA 60.080 45.833 18.26 12.80 46.80 2.74
191 192 4.274950 GCTAGTCAACTAGAGGCTCACTAG 59.725 50.000 23.14 23.14 46.80 2.57
192 193 3.626930 AGTCAACTAGAGGCTCACTAGG 58.373 50.000 18.26 3.24 40.86 3.02
193 194 2.691011 GTCAACTAGAGGCTCACTAGGG 59.309 54.545 18.26 7.64 40.86 3.53
194 195 2.581246 TCAACTAGAGGCTCACTAGGGA 59.419 50.000 18.26 9.66 40.86 4.20
195 196 2.691011 CAACTAGAGGCTCACTAGGGAC 59.309 54.545 18.26 0.00 40.86 4.46
196 197 1.923850 ACTAGAGGCTCACTAGGGACA 59.076 52.381 18.26 0.00 40.86 4.02
197 198 2.516277 ACTAGAGGCTCACTAGGGACAT 59.484 50.000 18.26 0.00 40.86 3.06
198 199 1.786937 AGAGGCTCACTAGGGACATG 58.213 55.000 18.26 0.00 0.00 3.21
199 200 1.007721 AGAGGCTCACTAGGGACATGT 59.992 52.381 18.26 0.00 0.00 3.21
200 201 1.834263 GAGGCTCACTAGGGACATGTT 59.166 52.381 10.25 0.00 0.00 2.71
201 202 1.556911 AGGCTCACTAGGGACATGTTG 59.443 52.381 0.00 0.00 0.00 3.33
202 203 1.279271 GGCTCACTAGGGACATGTTGT 59.721 52.381 0.00 0.00 0.00 3.32
203 204 2.350522 GCTCACTAGGGACATGTTGTG 58.649 52.381 0.00 5.31 0.00 3.33
204 205 2.936993 GCTCACTAGGGACATGTTGTGG 60.937 54.545 0.00 0.00 0.00 4.17
205 206 2.303022 CTCACTAGGGACATGTTGTGGT 59.697 50.000 0.00 0.00 0.00 4.16
206 207 2.301870 TCACTAGGGACATGTTGTGGTC 59.698 50.000 0.00 0.00 0.00 4.02
207 208 2.303022 CACTAGGGACATGTTGTGGTCT 59.697 50.000 0.00 0.00 34.49 3.85
208 209 3.513912 CACTAGGGACATGTTGTGGTCTA 59.486 47.826 0.00 0.00 34.49 2.59
209 210 4.162320 CACTAGGGACATGTTGTGGTCTAT 59.838 45.833 0.00 0.00 34.49 1.98
210 211 3.634397 AGGGACATGTTGTGGTCTATG 57.366 47.619 0.00 0.00 34.49 2.23
211 212 2.912956 AGGGACATGTTGTGGTCTATGT 59.087 45.455 0.00 0.00 36.54 2.29
212 213 4.101114 AGGGACATGTTGTGGTCTATGTA 58.899 43.478 0.00 0.00 34.18 2.29
213 214 4.721776 AGGGACATGTTGTGGTCTATGTAT 59.278 41.667 0.00 0.00 34.18 2.29
214 215 5.191722 AGGGACATGTTGTGGTCTATGTATT 59.808 40.000 0.00 0.00 34.18 1.89
215 216 5.527582 GGGACATGTTGTGGTCTATGTATTC 59.472 44.000 0.00 0.00 34.18 1.75
216 217 6.112734 GGACATGTTGTGGTCTATGTATTCA 58.887 40.000 0.00 0.00 34.18 2.57
217 218 6.597672 GGACATGTTGTGGTCTATGTATTCAA 59.402 38.462 0.00 0.00 34.18 2.69
218 219 7.120579 GGACATGTTGTGGTCTATGTATTCAAA 59.879 37.037 0.00 0.00 34.18 2.69
219 220 7.816640 ACATGTTGTGGTCTATGTATTCAAAC 58.183 34.615 0.00 0.00 32.41 2.93
220 221 7.446931 ACATGTTGTGGTCTATGTATTCAAACA 59.553 33.333 0.00 0.00 32.41 2.83
221 222 7.994425 TGTTGTGGTCTATGTATTCAAACAT 57.006 32.000 0.00 0.00 42.62 2.71
222 223 7.815641 TGTTGTGGTCTATGTATTCAAACATG 58.184 34.615 0.00 0.00 40.29 3.21
223 224 7.446931 TGTTGTGGTCTATGTATTCAAACATGT 59.553 33.333 0.00 0.00 40.29 3.21
224 225 8.941977 GTTGTGGTCTATGTATTCAAACATGTA 58.058 33.333 0.00 0.00 40.29 2.29
225 226 9.679661 TTGTGGTCTATGTATTCAAACATGTAT 57.320 29.630 0.00 0.00 40.29 2.29
226 227 9.679661 TGTGGTCTATGTATTCAAACATGTATT 57.320 29.630 0.00 0.00 40.29 1.89
235 236 9.828852 TGTATTCAAACATGTATTACGGTTTTC 57.171 29.630 0.00 4.65 29.63 2.29
236 237 9.828852 GTATTCAAACATGTATTACGGTTTTCA 57.171 29.630 0.00 4.89 29.63 2.69
238 239 9.921637 ATTCAAACATGTATTACGGTTTTCAAT 57.078 25.926 0.00 10.31 29.63 2.57
239 240 9.751542 TTCAAACATGTATTACGGTTTTCAATT 57.248 25.926 0.00 0.00 29.63 2.32
240 241 9.751542 TCAAACATGTATTACGGTTTTCAATTT 57.248 25.926 0.00 0.00 29.63 1.82
268 269 7.643569 ACAATTATAGCATGAACAATGGACA 57.356 32.000 0.00 0.00 36.71 4.02
269 270 8.065473 ACAATTATAGCATGAACAATGGACAA 57.935 30.769 0.00 0.00 36.71 3.18
270 271 8.698210 ACAATTATAGCATGAACAATGGACAAT 58.302 29.630 0.00 0.00 36.71 2.71
271 272 9.537192 CAATTATAGCATGAACAATGGACAATT 57.463 29.630 0.00 0.00 36.71 2.32
275 276 6.778834 AGCATGAACAATGGACAATTATCA 57.221 33.333 0.00 0.00 36.71 2.15
276 277 7.356089 AGCATGAACAATGGACAATTATCAT 57.644 32.000 0.00 0.00 35.74 2.45
277 278 7.207383 AGCATGAACAATGGACAATTATCATG 58.793 34.615 18.09 18.09 44.73 3.07
278 279 7.068962 AGCATGAACAATGGACAATTATCATGA 59.931 33.333 22.80 0.00 44.72 3.07
279 280 7.707464 GCATGAACAATGGACAATTATCATGAA 59.293 33.333 22.80 0.00 44.72 2.57
280 281 9.027129 CATGAACAATGGACAATTATCATGAAC 57.973 33.333 17.78 0.00 44.72 3.18
281 282 8.120140 TGAACAATGGACAATTATCATGAACA 57.880 30.769 0.00 0.00 0.00 3.18
282 283 8.583296 TGAACAATGGACAATTATCATGAACAA 58.417 29.630 0.00 0.00 0.00 2.83
283 284 8.991243 AACAATGGACAATTATCATGAACAAG 57.009 30.769 0.00 0.00 0.00 3.16
284 285 7.549839 ACAATGGACAATTATCATGAACAAGG 58.450 34.615 0.00 0.00 0.00 3.61
285 286 7.396907 ACAATGGACAATTATCATGAACAAGGA 59.603 33.333 0.00 0.00 0.00 3.36
286 287 7.959658 ATGGACAATTATCATGAACAAGGAA 57.040 32.000 0.00 0.00 0.00 3.36
287 288 7.773489 TGGACAATTATCATGAACAAGGAAA 57.227 32.000 0.00 0.00 0.00 3.13
288 289 8.365060 TGGACAATTATCATGAACAAGGAAAT 57.635 30.769 0.00 0.00 0.00 2.17
289 290 9.473007 TGGACAATTATCATGAACAAGGAAATA 57.527 29.630 0.00 0.00 0.00 1.40
321 322 7.839680 AACCATTTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
341 342 8.859090 TCTAGGGCATATTTCCAACAATTATTG 58.141 33.333 3.07 3.07 0.00 1.90
407 408 5.930135 TCCCAGTTCCAAGAATAAGATAGC 58.070 41.667 0.00 0.00 0.00 2.97
408 409 5.428457 TCCCAGTTCCAAGAATAAGATAGCA 59.572 40.000 0.00 0.00 0.00 3.49
412 413 7.050377 CAGTTCCAAGAATAAGATAGCAGGAA 58.950 38.462 0.00 0.00 0.00 3.36
417 418 6.360618 CAAGAATAAGATAGCAGGAAACCCT 58.639 40.000 0.00 0.00 0.00 4.34
431 432 4.086457 GGAAACCCTACAAATGGACACAT 58.914 43.478 0.00 0.00 39.54 3.21
436 437 4.079787 ACCCTACAAATGGACACATATGCT 60.080 41.667 1.58 0.00 35.94 3.79
449 450 5.195940 ACACATATGCTAACTTGGCTCAAT 58.804 37.500 1.58 0.00 0.00 2.57
455 462 4.973168 TGCTAACTTGGCTCAATATAGGG 58.027 43.478 0.00 0.00 0.00 3.53
462 469 3.162666 TGGCTCAATATAGGGTCTACCG 58.837 50.000 0.00 0.00 46.96 4.02
471 478 0.105142 AGGGTCTACCGCCATACCAT 60.105 55.000 0.00 0.00 46.96 3.55
493 500 9.920946 ACCATGACTATGTTATTGAAATAACCT 57.079 29.630 18.61 13.37 46.38 3.50
542 549 2.853542 TGGTGCTCCTGCCTCCAA 60.854 61.111 6.34 0.00 38.50 3.53
552 559 1.481802 CCTGCCTCCAATGCCCATTAT 60.482 52.381 0.00 0.00 0.00 1.28
553 560 2.322658 CTGCCTCCAATGCCCATTATT 58.677 47.619 0.00 0.00 0.00 1.40
554 561 2.036733 CTGCCTCCAATGCCCATTATTG 59.963 50.000 0.00 0.00 35.75 1.90
555 562 1.270465 GCCTCCAATGCCCATTATTGC 60.270 52.381 0.00 0.00 34.88 3.56
558 565 1.129917 CCAATGCCCATTATTGCCCA 58.870 50.000 0.00 0.00 34.88 5.36
559 566 1.202675 CCAATGCCCATTATTGCCCAC 60.203 52.381 0.00 0.00 34.88 4.61
560 567 1.130777 AATGCCCATTATTGCCCACC 58.869 50.000 0.00 0.00 0.00 4.61
561 568 0.265553 ATGCCCATTATTGCCCACCT 59.734 50.000 0.00 0.00 0.00 4.00
562 569 0.929984 TGCCCATTATTGCCCACCTA 59.070 50.000 0.00 0.00 0.00 3.08
619 626 7.539712 TGCTACTAGAAAGGAAATCAAATCG 57.460 36.000 0.00 0.00 0.00 3.34
632 639 6.090763 GGAAATCAAATCGAAATCCAAACCAC 59.909 38.462 0.00 0.00 34.23 4.16
640 647 3.304659 CGAAATCCAAACCACAACTCCAG 60.305 47.826 0.00 0.00 0.00 3.86
646 653 5.017490 TCCAAACCACAACTCCAGTAAAAA 58.983 37.500 0.00 0.00 0.00 1.94
744 752 2.727123 TTTGAGTGGGCAAGTCTTGA 57.273 45.000 16.99 0.00 0.00 3.02
746 754 1.131638 TGAGTGGGCAAGTCTTGACT 58.868 50.000 18.01 11.23 39.20 3.41
747 755 1.490490 TGAGTGGGCAAGTCTTGACTT 59.510 47.619 18.01 9.93 39.20 3.01
748 756 2.092429 TGAGTGGGCAAGTCTTGACTTT 60.092 45.455 18.01 4.17 39.20 2.66
784 792 7.830739 AGACAAACAAGTCTTCACATTTTTCT 58.169 30.769 0.00 0.00 46.26 2.52
785 793 8.306761 AGACAAACAAGTCTTCACATTTTTCTT 58.693 29.630 0.00 0.00 46.26 2.52
786 794 8.831715 ACAAACAAGTCTTCACATTTTTCTTT 57.168 26.923 0.00 0.00 0.00 2.52
787 795 8.711457 ACAAACAAGTCTTCACATTTTTCTTTG 58.289 29.630 0.00 0.00 0.00 2.77
788 796 8.924691 CAAACAAGTCTTCACATTTTTCTTTGA 58.075 29.630 0.00 0.00 0.00 2.69
789 797 8.693542 AACAAGTCTTCACATTTTTCTTTGAG 57.306 30.769 0.00 0.00 0.00 3.02
790 798 7.260603 ACAAGTCTTCACATTTTTCTTTGAGG 58.739 34.615 0.00 0.00 0.00 3.86
791 799 6.396829 AGTCTTCACATTTTTCTTTGAGGG 57.603 37.500 0.00 0.00 0.00 4.30
792 800 5.302823 AGTCTTCACATTTTTCTTTGAGGGG 59.697 40.000 0.00 0.00 0.00 4.79
793 801 4.588528 TCTTCACATTTTTCTTTGAGGGGG 59.411 41.667 0.00 0.00 0.00 5.40
794 802 4.191804 TCACATTTTTCTTTGAGGGGGA 57.808 40.909 0.00 0.00 0.00 4.81
797 805 3.641436 ACATTTTTCTTTGAGGGGGACAC 59.359 43.478 0.00 0.00 0.00 3.67
800 808 0.841289 TTCTTTGAGGGGGACACGTT 59.159 50.000 0.00 0.00 0.00 3.99
820 828 3.347958 TTTGACATTTGTGAGCGTTCC 57.652 42.857 0.00 0.00 0.00 3.62
858 866 3.710722 CCGTCAGGCCCAGCTTCT 61.711 66.667 0.00 0.00 0.00 2.85
863 871 3.080121 AGGCCCAGCTTCTCTCCG 61.080 66.667 0.00 0.00 0.00 4.63
866 874 2.896443 CCCAGCTTCTCTCCGGAC 59.104 66.667 0.00 0.00 0.00 4.79
867 875 2.726351 CCCAGCTTCTCTCCGGACC 61.726 68.421 0.00 0.00 0.00 4.46
868 876 2.726351 CCAGCTTCTCTCCGGACCC 61.726 68.421 0.00 0.00 0.00 4.46
870 878 2.364448 GCTTCTCTCCGGACCCCT 60.364 66.667 0.00 0.00 0.00 4.79
1291 1317 0.903236 GCCTTCTTCTCCCGTTACCT 59.097 55.000 0.00 0.00 0.00 3.08
1299 1329 3.076278 CCCGTTACCTGGGCCGTA 61.076 66.667 0.00 0.00 40.47 4.02
1333 1363 7.043059 GCTTCGTGGTTTGTTAATTTTGATTGA 60.043 33.333 0.00 0.00 0.00 2.57
1337 1367 8.003224 CGTGGTTTGTTAATTTTGATTGATGTG 58.997 33.333 0.00 0.00 0.00 3.21
1339 1369 9.388506 TGGTTTGTTAATTTTGATTGATGTGTT 57.611 25.926 0.00 0.00 0.00 3.32
1345 1375 9.421806 GTTAATTTTGATTGATGTGTTCATGGA 57.578 29.630 0.00 0.00 33.34 3.41
1353 1383 3.118445 TGATGTGTTCATGGAGGCGATAA 60.118 43.478 0.00 0.00 34.06 1.75
1375 1405 1.338294 TGGTTACACACATACCCTGCG 60.338 52.381 0.00 0.00 0.00 5.18
1436 1466 4.768448 TGCGAAATATATTACTCCCTCCGA 59.232 41.667 0.00 0.00 0.00 4.55
1440 1470 6.466885 AAATATATTACTCCCTCCGATCCG 57.533 41.667 0.00 0.00 0.00 4.18
1480 1892 7.499232 AGCCTCTATACAATGTAAAATGGACAC 59.501 37.037 0.00 0.00 0.00 3.67
1512 1924 5.364446 AGGCTGCATCATTTAATTTGGATCA 59.636 36.000 0.50 0.00 0.00 2.92
1541 2170 7.764901 GGGAGTAGTAGATTGAGTTACTTTTGG 59.235 40.741 0.00 0.00 32.64 3.28
1572 2203 7.095060 TGAGAGAGACAACAATTAATTGCACTC 60.095 37.037 24.82 23.32 41.38 3.51
1585 2216 1.258676 TGCACTCACGTGTATGGGTA 58.741 50.000 16.51 5.23 43.16 3.69
1590 2221 2.094182 ACTCACGTGTATGGGTAAGCTG 60.094 50.000 16.51 0.00 28.91 4.24
1598 2229 3.521531 TGTATGGGTAAGCTGGTCATGAA 59.478 43.478 0.00 0.00 0.00 2.57
1633 2264 9.973450 TTATCTAGATGCTTCTAACTGTTCATC 57.027 33.333 15.79 9.79 34.06 2.92
1637 2268 9.809096 CTAGATGCTTCTAACTGTTCATCTTAA 57.191 33.333 20.04 8.34 40.48 1.85
1651 2298 8.902540 TGTTCATCTTAATAGTGTTGTCTTGT 57.097 30.769 0.00 0.00 0.00 3.16
1652 2299 9.990360 TGTTCATCTTAATAGTGTTGTCTTGTA 57.010 29.630 0.00 0.00 0.00 2.41
1664 2311 7.927048 AGTGTTGTCTTGTAATTTTAGTGTCC 58.073 34.615 0.00 0.00 0.00 4.02
1665 2312 7.554835 AGTGTTGTCTTGTAATTTTAGTGTCCA 59.445 33.333 0.00 0.00 0.00 4.02
1666 2313 8.349983 GTGTTGTCTTGTAATTTTAGTGTCCAT 58.650 33.333 0.00 0.00 0.00 3.41
1667 2314 9.562408 TGTTGTCTTGTAATTTTAGTGTCCATA 57.438 29.630 0.00 0.00 0.00 2.74
1795 2442 3.551846 TGGGTTTCTGGTTTCTGAGAAC 58.448 45.455 0.00 0.00 0.00 3.01
1825 2472 4.150897 TGGCTTATACACTGGGAATCAC 57.849 45.455 0.00 0.00 0.00 3.06
1838 2485 3.117474 TGGGAATCACTTTGGTACCAACA 60.117 43.478 27.08 14.86 35.46 3.33
1891 2541 3.181485 CCGAGTGGATGGAAGAGAAGTAC 60.181 52.174 0.00 0.00 37.49 2.73
1963 2613 3.845781 TCAGTTATCCATCAGCCTTCC 57.154 47.619 0.00 0.00 0.00 3.46
1976 2626 0.458025 GCCTTCCGTGTCTCCTAACG 60.458 60.000 0.00 0.00 39.48 3.18
2127 2777 0.478072 TCCATGCCACCTGTTTCTGT 59.522 50.000 0.00 0.00 0.00 3.41
2143 2793 5.070446 TGTTTCTGTCTCACCTGAAGTATGT 59.930 40.000 0.00 0.00 0.00 2.29
2550 3200 4.214332 GTCTGGTTTCAAGAGCTTACAAGG 59.786 45.833 0.00 0.00 0.00 3.61
2644 3294 9.612620 CTTGAAGTAAATAATCCTGTTGTTGAC 57.387 33.333 0.00 0.00 0.00 3.18
2677 3327 2.930826 AAGGGACACCAACTGTACAG 57.069 50.000 21.44 21.44 34.97 2.74
2708 3358 8.775527 CATCATTTGGTGTGAAAAATGATGAAA 58.224 29.630 29.71 6.95 43.86 2.69
2740 3390 2.158856 TGCTAATGGCTCAGATGACCTG 60.159 50.000 0.00 0.00 42.39 4.00
2780 3430 4.791088 GCAAGAAGCTTTCTGAGTTTGGTC 60.791 45.833 0.00 0.00 40.59 4.02
2827 3477 4.965814 AGCGTCATGATACATCAAATCCT 58.034 39.130 0.00 0.00 40.69 3.24
2839 3489 9.281371 GATACATCAAATCCTGAGAATGATTCA 57.719 33.333 8.03 0.00 37.52 2.57
2842 3492 6.387041 TCAAATCCTGAGAATGATTCATGC 57.613 37.500 8.03 0.00 0.00 4.06
2843 3493 5.008316 TCAAATCCTGAGAATGATTCATGCG 59.992 40.000 8.03 0.00 0.00 4.73
2860 3510 4.569162 TCATGCGTACCTTACTATGCAAAC 59.431 41.667 0.00 0.00 41.03 2.93
2898 3548 3.074538 AGTCTGCCTTCAGGGTGTAAAAT 59.925 43.478 0.00 0.00 40.69 1.82
2906 3556 6.377146 GCCTTCAGGGTGTAAAATATCTGAAA 59.623 38.462 0.00 0.00 39.66 2.69
2927 3577 3.254060 AGTCATAGTGATGCACAACGAC 58.746 45.455 0.00 0.00 36.74 4.34
3074 3724 0.192566 ACCAGGTCAACAGGGAGGTA 59.807 55.000 0.00 0.00 0.00 3.08
3217 3867 3.071479 TGCAAAGGCTAGGAGTTTAACG 58.929 45.455 0.00 0.00 41.91 3.18
3391 4041 1.554160 ACCAGCAGATCCAAGACTCAG 59.446 52.381 0.00 0.00 0.00 3.35
3542 4192 3.820557 TCCAAGATAAGCAAGGTATGGC 58.179 45.455 0.00 0.00 0.00 4.40
3698 4501 5.897377 AAAGATGTACATTACAACCTGGC 57.103 39.130 10.30 0.00 42.76 4.85
3809 4631 4.124970 CCCCTGGTATTTTCGTACTAAGC 58.875 47.826 0.00 0.00 0.00 3.09
3843 4671 8.275040 AGCTTCCATTTTTAGTAGTGATATGGT 58.725 33.333 0.00 0.00 34.21 3.55
3913 4741 8.184192 ACGTTATATCATTCTTGCTTTCTTTGG 58.816 33.333 0.00 0.00 0.00 3.28
3946 4774 4.334759 ACAGCTGCTGATATTGCTTTACAG 59.665 41.667 34.28 3.82 35.18 2.74
3957 4785 2.989422 GCTTTACAGCATCCGTTGTT 57.011 45.000 0.00 0.00 46.49 2.83
4000 4828 6.073222 GGCCGACTAGTTAATTAACATCATGG 60.073 42.308 26.06 21.28 38.62 3.66
4203 5117 4.753233 TGGTTGACTCATTTTGGTTTGTG 58.247 39.130 0.00 0.00 0.00 3.33
4304 5221 3.568853 CCATGGAAAGAATCATCAGCCTC 59.431 47.826 5.56 0.00 0.00 4.70
4414 5331 5.004448 TGTTAGGTATCTGCTATCCTCTCG 58.996 45.833 0.00 0.00 0.00 4.04
4420 5337 5.008613 GGTATCTGCTATCCTCTCGATCATC 59.991 48.000 0.00 0.00 31.92 2.92
4421 5338 3.006247 TCTGCTATCCTCTCGATCATCG 58.994 50.000 0.00 0.00 42.10 3.84
4597 5514 1.742324 TTGCCCGCATGAAACTTGCA 61.742 50.000 0.00 0.00 40.14 4.08
4637 5554 3.304057 GCAAACAGGTTAGTGCTTCTGTC 60.304 47.826 0.00 0.00 39.26 3.51
4696 5613 6.822073 TCTGGATAATTCGTAACATTCACG 57.178 37.500 0.00 0.00 40.72 4.35
4786 5709 2.035066 CCTGCCCAACAAGAACTCTTTG 59.965 50.000 0.00 0.00 33.11 2.77
4851 5774 0.940126 AAAGAGCGCAATATCGGCAG 59.060 50.000 11.47 0.00 0.00 4.85
4855 5778 2.537560 GCGCAATATCGGCAGTGCT 61.538 57.895 16.11 0.00 37.37 4.40
5018 5941 5.012046 AGGACAGATGTTGTTGATGACACTA 59.988 40.000 0.00 0.00 41.05 2.74
5140 6063 2.301346 GCTACCATTGCTGCACCTAAT 58.699 47.619 0.00 0.00 0.00 1.73
5224 6147 7.118971 CAGCTAGAATCTAGTGAAAGCAAAGTT 59.881 37.037 17.59 0.00 0.00 2.66
5251 6174 2.231964 TGCTTTTATGGCCAAGCTCAAG 59.768 45.455 23.98 15.90 44.90 3.02
5335 6258 5.528320 CCAAACACCAAGCAAGAATGAATTT 59.472 36.000 0.00 0.00 0.00 1.82
5386 6309 0.944386 TGCAAGTCCTGAAAAGACGC 59.056 50.000 0.00 0.00 39.31 5.19
5437 6360 2.826128 GGGACAAGAGGTTTTCCATTCC 59.174 50.000 0.00 0.00 43.73 3.01
5449 6372 0.550432 TCCATTCCGATGATTGGGCA 59.450 50.000 0.00 0.00 40.75 5.36
5488 6411 2.391724 GACTTGGTCGAGGGGTGCAA 62.392 60.000 0.00 0.00 0.00 4.08
5607 6556 3.435186 GCTTGAAGAGCCCCGTGC 61.435 66.667 0.00 0.00 46.01 5.34
5635 6584 4.697756 CCGGCGGAACCTGCAAGA 62.698 66.667 24.41 0.00 34.07 3.02
6010 6986 9.908152 CTTGACACCTATATTATCGTAACATGA 57.092 33.333 0.00 0.00 0.00 3.07
6032 7008 3.557577 TTGATTGTGTGTGTGCTATGC 57.442 42.857 0.00 0.00 0.00 3.14
6085 7068 2.475155 TCTCCAGATGTGCCTCTGAAT 58.525 47.619 9.03 0.00 44.48 2.57
6093 7076 6.017275 CCAGATGTGCCTCTGAATATCTTTTC 60.017 42.308 9.03 0.00 44.48 2.29
6143 7126 5.245531 CAGTTTGGCTGTTGAGGAGTATAA 58.754 41.667 0.00 0.00 40.27 0.98
6163 7146 1.639722 AAAATGGGTGGGCCAACTAC 58.360 50.000 23.12 6.16 36.17 2.73
6164 7147 0.485099 AAATGGGTGGGCCAACTACA 59.515 50.000 23.12 12.62 36.17 2.74
6220 7208 1.608590 ACCTGCTTTTGTGATTCCACG 59.391 47.619 0.00 0.00 46.06 4.94
6264 7255 6.949463 TCACCAATGATGCAATCCATGTATAT 59.051 34.615 0.00 0.00 44.73 0.86
6265 7256 8.108364 TCACCAATGATGCAATCCATGTATATA 58.892 33.333 0.00 0.00 44.73 0.86
6334 7325 7.907214 TCCTTCTGTAAAGAAATGTAAGAGC 57.093 36.000 0.00 0.00 0.00 4.09
6335 7326 7.450074 TCCTTCTGTAAAGAAATGTAAGAGCA 58.550 34.615 0.00 0.00 0.00 4.26
6336 7327 8.103305 TCCTTCTGTAAAGAAATGTAAGAGCAT 58.897 33.333 0.00 0.00 0.00 3.79
6337 7328 8.734386 CCTTCTGTAAAGAAATGTAAGAGCATT 58.266 33.333 0.00 0.00 40.43 3.56
6374 7365 7.857569 TCCTTTTGTAAAGAGTGTTTACATCG 58.142 34.615 22.10 14.39 42.36 3.84
6387 7378 6.255887 AGTGTTTACATCGCAAGTATCTTAGC 59.744 38.462 0.00 0.00 39.48 3.09
6388 7379 5.522460 TGTTTACATCGCAAGTATCTTAGCC 59.478 40.000 0.00 0.00 39.48 3.93
6389 7380 5.531122 TTACATCGCAAGTATCTTAGCCT 57.469 39.130 0.00 0.00 39.48 4.58
6390 7381 6.644248 TTACATCGCAAGTATCTTAGCCTA 57.356 37.500 0.00 0.00 39.48 3.93
6391 7382 5.730296 ACATCGCAAGTATCTTAGCCTAT 57.270 39.130 0.00 0.00 39.48 2.57
6392 7383 5.473931 ACATCGCAAGTATCTTAGCCTATG 58.526 41.667 0.00 0.00 39.48 2.23
6445 7438 0.828343 CCCCCTTCCTCTACCTAGCG 60.828 65.000 0.00 0.00 0.00 4.26
6456 7449 0.321919 TACCTAGCGACACACTCCGT 60.322 55.000 0.00 0.00 0.00 4.69
6467 7460 2.440539 ACACTCCGTGATGTTGAGAC 57.559 50.000 0.38 0.00 36.96 3.36
6468 7461 1.000955 ACACTCCGTGATGTTGAGACC 59.999 52.381 0.38 0.00 36.96 3.85
6469 7462 1.273606 CACTCCGTGATGTTGAGACCT 59.726 52.381 0.00 0.00 35.23 3.85
6470 7463 1.546476 ACTCCGTGATGTTGAGACCTC 59.454 52.381 0.00 0.00 0.00 3.85
6471 7464 0.895530 TCCGTGATGTTGAGACCTCC 59.104 55.000 0.00 0.00 0.00 4.30
6472 7465 0.608130 CCGTGATGTTGAGACCTCCA 59.392 55.000 0.00 0.00 0.00 3.86
6520 7513 8.305441 TTTTTCTTTTTGCGAGAAAACTTTCT 57.695 26.923 10.54 4.37 46.81 2.52
6618 7611 2.105006 AGCGACGACTACAAGGACTA 57.895 50.000 0.00 0.00 0.00 2.59
6628 7621 0.389948 ACAAGGACTAAAGCGAGCCG 60.390 55.000 0.00 0.00 0.00 5.52
6632 7625 0.172803 GGACTAAAGCGAGCCGAAGA 59.827 55.000 0.00 0.00 0.00 2.87
6659 7652 2.796193 CGTCATCGCCCCTCCATCA 61.796 63.158 0.00 0.00 0.00 3.07
6660 7653 1.757306 GTCATCGCCCCTCCATCAT 59.243 57.895 0.00 0.00 0.00 2.45
6662 7655 0.763986 TCATCGCCCCTCCATCATCA 60.764 55.000 0.00 0.00 0.00 3.07
6674 7667 0.176449 CATCATCAGAGTCGGGCACA 59.824 55.000 0.00 0.00 0.00 4.57
6703 7696 2.581216 AGTAGACAGTCGGGAAGTCA 57.419 50.000 0.00 0.00 34.80 3.41
6715 7708 1.291132 GGAAGTCATCGTGCTAAGGC 58.709 55.000 0.00 0.00 39.26 4.35
6724 7717 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
6730 7723 4.235731 GGCCCCATAGGACAAACG 57.764 61.111 0.00 0.00 46.95 3.60
6731 7724 2.119029 GGCCCCATAGGACAAACGC 61.119 63.158 0.00 0.00 46.95 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.678260 AGAGCTTTTCTAATGTCAAGTATCATT 57.322 29.630 0.00 0.00 37.85 2.57
2 3 9.678260 AAGAGCTTTTCTAATGTCAAGTATCAT 57.322 29.630 0.00 0.00 34.14 2.45
5 6 9.103861 GCTAAGAGCTTTTCTAATGTCAAGTAT 57.896 33.333 0.00 0.00 38.45 2.12
6 7 8.094548 TGCTAAGAGCTTTTCTAATGTCAAGTA 58.905 33.333 0.00 0.00 42.97 2.24
7 8 6.936900 TGCTAAGAGCTTTTCTAATGTCAAGT 59.063 34.615 0.00 0.00 42.97 3.16
8 9 7.369803 TGCTAAGAGCTTTTCTAATGTCAAG 57.630 36.000 0.00 0.00 42.97 3.02
9 10 7.744087 TTGCTAAGAGCTTTTCTAATGTCAA 57.256 32.000 0.00 0.00 42.97 3.18
10 11 7.571244 CGTTTGCTAAGAGCTTTTCTAATGTCA 60.571 37.037 0.00 0.00 42.97 3.58
11 12 6.738649 CGTTTGCTAAGAGCTTTTCTAATGTC 59.261 38.462 0.00 0.00 42.97 3.06
12 13 6.426937 TCGTTTGCTAAGAGCTTTTCTAATGT 59.573 34.615 0.00 0.00 42.97 2.71
13 14 6.831769 TCGTTTGCTAAGAGCTTTTCTAATG 58.168 36.000 0.00 0.00 42.97 1.90
14 15 7.173390 AGTTCGTTTGCTAAGAGCTTTTCTAAT 59.827 33.333 0.00 0.00 42.97 1.73
15 16 6.482308 AGTTCGTTTGCTAAGAGCTTTTCTAA 59.518 34.615 0.00 0.00 42.97 2.10
16 17 5.989777 AGTTCGTTTGCTAAGAGCTTTTCTA 59.010 36.000 0.00 0.00 42.97 2.10
17 18 4.816925 AGTTCGTTTGCTAAGAGCTTTTCT 59.183 37.500 0.00 0.00 42.97 2.52
18 19 5.096954 AGTTCGTTTGCTAAGAGCTTTTC 57.903 39.130 0.00 0.00 42.97 2.29
19 20 6.803154 ATAGTTCGTTTGCTAAGAGCTTTT 57.197 33.333 0.00 0.00 42.97 2.27
20 21 6.034683 CGTATAGTTCGTTTGCTAAGAGCTTT 59.965 38.462 0.00 0.00 42.97 3.51
21 22 5.515626 CGTATAGTTCGTTTGCTAAGAGCTT 59.484 40.000 0.00 0.00 42.97 3.74
22 23 5.035443 CGTATAGTTCGTTTGCTAAGAGCT 58.965 41.667 0.00 0.00 42.97 4.09
23 24 5.032863 TCGTATAGTTCGTTTGCTAAGAGC 58.967 41.667 0.00 0.00 42.82 4.09
24 25 7.133513 AGATCGTATAGTTCGTTTGCTAAGAG 58.866 38.462 0.00 0.00 0.00 2.85
25 26 7.024340 AGATCGTATAGTTCGTTTGCTAAGA 57.976 36.000 0.00 0.00 0.00 2.10
26 27 7.220300 ACAAGATCGTATAGTTCGTTTGCTAAG 59.780 37.037 0.00 0.00 0.00 2.18
27 28 7.008901 CACAAGATCGTATAGTTCGTTTGCTAA 59.991 37.037 0.00 0.00 0.00 3.09
28 29 6.471198 CACAAGATCGTATAGTTCGTTTGCTA 59.529 38.462 0.00 0.00 0.00 3.49
29 30 5.288712 CACAAGATCGTATAGTTCGTTTGCT 59.711 40.000 0.00 0.00 0.00 3.91
30 31 5.481472 CACAAGATCGTATAGTTCGTTTGC 58.519 41.667 0.00 0.00 0.00 3.68
31 32 5.288712 AGCACAAGATCGTATAGTTCGTTTG 59.711 40.000 0.00 0.00 0.00 2.93
32 33 5.408356 AGCACAAGATCGTATAGTTCGTTT 58.592 37.500 0.00 0.00 0.00 3.60
33 34 4.995124 AGCACAAGATCGTATAGTTCGTT 58.005 39.130 0.00 0.00 0.00 3.85
34 35 4.634184 AGCACAAGATCGTATAGTTCGT 57.366 40.909 0.00 0.00 0.00 3.85
35 36 5.059832 GCATAGCACAAGATCGTATAGTTCG 59.940 44.000 0.00 0.00 0.00 3.95
36 37 6.153067 AGCATAGCACAAGATCGTATAGTTC 58.847 40.000 0.00 0.00 0.00 3.01
37 38 6.090483 AGCATAGCACAAGATCGTATAGTT 57.910 37.500 0.00 0.00 0.00 2.24
38 39 5.713792 AGCATAGCACAAGATCGTATAGT 57.286 39.130 0.00 0.00 0.00 2.12
39 40 6.749578 CCTAAGCATAGCACAAGATCGTATAG 59.250 42.308 0.00 0.00 0.00 1.31
40 41 6.433093 TCCTAAGCATAGCACAAGATCGTATA 59.567 38.462 0.00 0.00 0.00 1.47
41 42 5.243954 TCCTAAGCATAGCACAAGATCGTAT 59.756 40.000 0.00 0.00 0.00 3.06
42 43 4.583073 TCCTAAGCATAGCACAAGATCGTA 59.417 41.667 0.00 0.00 0.00 3.43
43 44 3.384789 TCCTAAGCATAGCACAAGATCGT 59.615 43.478 0.00 0.00 0.00 3.73
44 45 3.982475 TCCTAAGCATAGCACAAGATCG 58.018 45.455 0.00 0.00 0.00 3.69
45 46 5.180868 CCAATCCTAAGCATAGCACAAGATC 59.819 44.000 0.00 0.00 0.00 2.75
46 47 5.068636 CCAATCCTAAGCATAGCACAAGAT 58.931 41.667 0.00 0.00 0.00 2.40
47 48 4.454678 CCAATCCTAAGCATAGCACAAGA 58.545 43.478 0.00 0.00 0.00 3.02
48 49 3.567164 CCCAATCCTAAGCATAGCACAAG 59.433 47.826 0.00 0.00 0.00 3.16
49 50 3.053693 ACCCAATCCTAAGCATAGCACAA 60.054 43.478 0.00 0.00 0.00 3.33
50 51 2.509548 ACCCAATCCTAAGCATAGCACA 59.490 45.455 0.00 0.00 0.00 4.57
51 52 3.142174 GACCCAATCCTAAGCATAGCAC 58.858 50.000 0.00 0.00 0.00 4.40
52 53 3.048600 AGACCCAATCCTAAGCATAGCA 58.951 45.455 0.00 0.00 0.00 3.49
53 54 3.778954 AGACCCAATCCTAAGCATAGC 57.221 47.619 0.00 0.00 0.00 2.97
54 55 5.041191 ACAAGACCCAATCCTAAGCATAG 57.959 43.478 0.00 0.00 0.00 2.23
55 56 4.141482 GGACAAGACCCAATCCTAAGCATA 60.141 45.833 0.00 0.00 0.00 3.14
56 57 3.372025 GGACAAGACCCAATCCTAAGCAT 60.372 47.826 0.00 0.00 0.00 3.79
57 58 2.026262 GGACAAGACCCAATCCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
58 59 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
59 60 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
60 61 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
61 62 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
62 63 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
63 64 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
64 65 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
65 66 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
66 67 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
67 68 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
68 69 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
69 70 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
70 71 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
71 72 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
72 73 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
73 74 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
74 75 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
75 76 8.944029 CATTATTAGGAGAATGATGTGATGGAC 58.056 37.037 0.00 0.00 36.76 4.02
76 77 8.663167 ACATTATTAGGAGAATGATGTGATGGA 58.337 33.333 6.83 0.00 36.76 3.41
77 78 8.859236 ACATTATTAGGAGAATGATGTGATGG 57.141 34.615 6.83 0.00 36.76 3.51
82 83 9.512588 GGAATCACATTATTAGGAGAATGATGT 57.487 33.333 1.82 2.78 36.76 3.06
83 84 8.663025 CGGAATCACATTATTAGGAGAATGATG 58.337 37.037 1.82 1.70 36.76 3.07
84 85 8.378565 ACGGAATCACATTATTAGGAGAATGAT 58.621 33.333 1.82 0.00 36.76 2.45
85 86 7.735917 ACGGAATCACATTATTAGGAGAATGA 58.264 34.615 1.82 0.00 36.76 2.57
86 87 7.969536 ACGGAATCACATTATTAGGAGAATG 57.030 36.000 0.00 0.00 39.71 2.67
88 89 9.706691 GATAACGGAATCACATTATTAGGAGAA 57.293 33.333 0.00 0.00 0.00 2.87
89 90 8.866093 TGATAACGGAATCACATTATTAGGAGA 58.134 33.333 0.00 0.00 30.92 3.71
90 91 9.489084 TTGATAACGGAATCACATTATTAGGAG 57.511 33.333 1.81 0.00 35.63 3.69
95 96 9.119418 TGTCATTGATAACGGAATCACATTATT 57.881 29.630 1.81 0.00 35.63 1.40
96 97 8.675705 TGTCATTGATAACGGAATCACATTAT 57.324 30.769 1.81 0.00 35.63 1.28
97 98 8.675705 ATGTCATTGATAACGGAATCACATTA 57.324 30.769 1.81 0.00 35.63 1.90
98 99 7.255242 GGATGTCATTGATAACGGAATCACATT 60.255 37.037 1.81 0.00 35.63 2.71
99 100 6.205464 GGATGTCATTGATAACGGAATCACAT 59.795 38.462 1.81 3.10 35.63 3.21
100 101 5.527214 GGATGTCATTGATAACGGAATCACA 59.473 40.000 1.81 0.00 35.63 3.58
101 102 5.760253 AGGATGTCATTGATAACGGAATCAC 59.240 40.000 1.81 0.00 35.63 3.06
102 103 5.928976 AGGATGTCATTGATAACGGAATCA 58.071 37.500 0.00 0.00 34.07 2.57
103 104 7.604164 ACATAGGATGTCATTGATAACGGAATC 59.396 37.037 0.00 0.00 39.92 2.52
104 105 7.453393 ACATAGGATGTCATTGATAACGGAAT 58.547 34.615 0.00 0.00 39.92 3.01
105 106 6.826668 ACATAGGATGTCATTGATAACGGAA 58.173 36.000 0.00 0.00 39.92 4.30
106 107 6.419484 ACATAGGATGTCATTGATAACGGA 57.581 37.500 0.00 0.00 39.92 4.69
120 121 2.974794 TCCTGACCATGGACATAGGATG 59.025 50.000 21.47 5.31 0.00 3.51
121 122 3.350992 TCCTGACCATGGACATAGGAT 57.649 47.619 21.47 0.00 0.00 3.24
122 123 2.866923 TCCTGACCATGGACATAGGA 57.133 50.000 21.47 18.93 0.00 2.94
123 124 3.545703 GTTTCCTGACCATGGACATAGG 58.454 50.000 21.47 16.85 32.65 2.57
124 125 3.054434 TGGTTTCCTGACCATGGACATAG 60.054 47.826 21.47 13.00 44.53 2.23
125 126 2.916269 TGGTTTCCTGACCATGGACATA 59.084 45.455 21.47 7.03 44.53 2.29
126 127 1.710244 TGGTTTCCTGACCATGGACAT 59.290 47.619 21.47 0.00 44.53 3.06
127 128 1.144691 TGGTTTCCTGACCATGGACA 58.855 50.000 21.47 18.47 44.53 4.02
134 135 8.429641 TCAATAGATAGTTATGGTTTCCTGACC 58.570 37.037 0.00 0.00 40.23 4.02
142 143 9.698309 CTCGTTGATCAATAGATAGTTATGGTT 57.302 33.333 12.12 0.00 33.72 3.67
143 144 7.815068 GCTCGTTGATCAATAGATAGTTATGGT 59.185 37.037 19.51 0.00 33.72 3.55
144 145 8.031864 AGCTCGTTGATCAATAGATAGTTATGG 58.968 37.037 19.51 7.58 33.72 2.74
145 146 8.978564 AGCTCGTTGATCAATAGATAGTTATG 57.021 34.615 19.51 8.11 33.72 1.90
147 148 9.286170 ACTAGCTCGTTGATCAATAGATAGTTA 57.714 33.333 28.30 16.54 36.17 2.24
148 149 8.172352 ACTAGCTCGTTGATCAATAGATAGTT 57.828 34.615 28.30 19.47 36.17 2.24
149 150 7.445707 TGACTAGCTCGTTGATCAATAGATAGT 59.554 37.037 31.17 31.17 39.18 2.12
150 151 7.811653 TGACTAGCTCGTTGATCAATAGATAG 58.188 38.462 27.46 27.46 34.33 2.08
151 152 7.745620 TGACTAGCTCGTTGATCAATAGATA 57.254 36.000 19.51 16.84 33.72 1.98
152 153 6.641169 TGACTAGCTCGTTGATCAATAGAT 57.359 37.500 19.51 16.66 37.13 1.98
153 154 6.095580 AGTTGACTAGCTCGTTGATCAATAGA 59.904 38.462 19.51 16.55 0.00 1.98
154 155 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
155 156 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
156 157 5.078411 AGTTGACTAGCTCGTTGATCAAT 57.922 39.130 12.12 0.00 0.00 2.57
157 158 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
158 159 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
159 160 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
160 161 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
161 162 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
162 163 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
163 164 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
164 165 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
165 166 2.289547 GAGCCTCTAGTTGACTAGCTCG 59.710 54.545 12.30 0.00 44.24 5.03
166 167 3.066203 GTGAGCCTCTAGTTGACTAGCTC 59.934 52.174 17.34 17.34 44.24 4.09
167 168 3.020984 GTGAGCCTCTAGTTGACTAGCT 58.979 50.000 12.30 7.92 44.24 3.32
168 169 3.020984 AGTGAGCCTCTAGTTGACTAGC 58.979 50.000 12.30 3.61 44.24 3.42
169 170 4.819630 CCTAGTGAGCCTCTAGTTGACTAG 59.180 50.000 11.14 11.14 45.57 2.57
170 171 4.385421 CCCTAGTGAGCCTCTAGTTGACTA 60.385 50.000 0.00 0.00 34.72 2.59
171 172 3.626222 CCCTAGTGAGCCTCTAGTTGACT 60.626 52.174 0.00 0.00 34.72 3.41
172 173 2.691011 CCCTAGTGAGCCTCTAGTTGAC 59.309 54.545 0.00 0.00 34.72 3.18
173 174 2.581246 TCCCTAGTGAGCCTCTAGTTGA 59.419 50.000 0.00 4.76 34.72 3.18
174 175 2.691011 GTCCCTAGTGAGCCTCTAGTTG 59.309 54.545 0.00 3.20 34.72 3.16
175 176 2.312140 TGTCCCTAGTGAGCCTCTAGTT 59.688 50.000 0.00 0.00 34.72 2.24
176 177 1.923850 TGTCCCTAGTGAGCCTCTAGT 59.076 52.381 0.00 0.00 34.72 2.57
177 178 2.738587 TGTCCCTAGTGAGCCTCTAG 57.261 55.000 0.00 0.00 35.86 2.43
178 179 2.245028 ACATGTCCCTAGTGAGCCTCTA 59.755 50.000 0.00 0.00 0.00 2.43
179 180 1.007721 ACATGTCCCTAGTGAGCCTCT 59.992 52.381 0.00 0.00 0.00 3.69
180 181 1.490574 ACATGTCCCTAGTGAGCCTC 58.509 55.000 0.00 0.00 0.00 4.70
181 182 1.556911 CAACATGTCCCTAGTGAGCCT 59.443 52.381 0.00 0.00 0.00 4.58
182 183 1.279271 ACAACATGTCCCTAGTGAGCC 59.721 52.381 0.00 0.00 0.00 4.70
183 184 2.350522 CACAACATGTCCCTAGTGAGC 58.649 52.381 0.00 0.00 0.00 4.26
184 185 2.303022 ACCACAACATGTCCCTAGTGAG 59.697 50.000 0.00 0.00 0.00 3.51
185 186 2.301870 GACCACAACATGTCCCTAGTGA 59.698 50.000 0.00 0.00 0.00 3.41
186 187 2.303022 AGACCACAACATGTCCCTAGTG 59.697 50.000 0.00 3.77 31.76 2.74
187 188 2.621070 AGACCACAACATGTCCCTAGT 58.379 47.619 0.00 0.00 31.76 2.57
188 189 4.162320 ACATAGACCACAACATGTCCCTAG 59.838 45.833 0.00 0.00 31.76 3.02
189 190 4.101114 ACATAGACCACAACATGTCCCTA 58.899 43.478 0.00 0.00 31.76 3.53
190 191 2.912956 ACATAGACCACAACATGTCCCT 59.087 45.455 0.00 0.00 31.76 4.20
191 192 3.350219 ACATAGACCACAACATGTCCC 57.650 47.619 0.00 0.00 31.76 4.46
192 193 6.112734 TGAATACATAGACCACAACATGTCC 58.887 40.000 0.00 0.00 33.78 4.02
193 194 7.609760 TTGAATACATAGACCACAACATGTC 57.390 36.000 0.00 0.00 33.78 3.06
194 195 7.446931 TGTTTGAATACATAGACCACAACATGT 59.553 33.333 0.00 0.00 35.81 3.21
195 196 7.815641 TGTTTGAATACATAGACCACAACATG 58.184 34.615 0.00 0.00 0.00 3.21
196 197 7.994425 TGTTTGAATACATAGACCACAACAT 57.006 32.000 0.00 0.00 0.00 2.71
197 198 7.446931 ACATGTTTGAATACATAGACCACAACA 59.553 33.333 0.00 0.00 36.64 3.33
198 199 7.816640 ACATGTTTGAATACATAGACCACAAC 58.183 34.615 0.00 0.00 36.64 3.32
199 200 7.994425 ACATGTTTGAATACATAGACCACAA 57.006 32.000 0.00 0.00 36.64 3.33
200 201 9.679661 AATACATGTTTGAATACATAGACCACA 57.320 29.630 2.30 0.00 36.64 4.17
209 210 9.828852 GAAAACCGTAATACATGTTTGAATACA 57.171 29.630 2.30 0.00 31.73 2.29
210 211 9.828852 TGAAAACCGTAATACATGTTTGAATAC 57.171 29.630 2.30 0.28 31.73 1.89
212 213 9.921637 ATTGAAAACCGTAATACATGTTTGAAT 57.078 25.926 2.30 7.50 31.73 2.57
213 214 9.751542 AATTGAAAACCGTAATACATGTTTGAA 57.248 25.926 2.30 6.06 31.73 2.69
214 215 9.751542 AAATTGAAAACCGTAATACATGTTTGA 57.248 25.926 2.30 0.00 31.73 2.69
242 243 9.353431 TGTCCATTGTTCATGCTATAATTGTAT 57.647 29.630 0.00 0.00 0.00 2.29
243 244 8.744568 TGTCCATTGTTCATGCTATAATTGTA 57.255 30.769 0.00 0.00 0.00 2.41
244 245 7.643569 TGTCCATTGTTCATGCTATAATTGT 57.356 32.000 0.00 0.00 0.00 2.71
245 246 9.537192 AATTGTCCATTGTTCATGCTATAATTG 57.463 29.630 0.00 0.00 0.00 2.32
249 250 9.571816 TGATAATTGTCCATTGTTCATGCTATA 57.428 29.630 0.00 0.00 0.00 1.31
250 251 8.467963 TGATAATTGTCCATTGTTCATGCTAT 57.532 30.769 0.00 0.00 0.00 2.97
251 252 7.878547 TGATAATTGTCCATTGTTCATGCTA 57.121 32.000 0.00 0.00 0.00 3.49
252 253 6.778834 TGATAATTGTCCATTGTTCATGCT 57.221 33.333 0.00 0.00 0.00 3.79
253 254 7.204604 TCATGATAATTGTCCATTGTTCATGC 58.795 34.615 13.83 0.00 41.34 4.06
254 255 9.027129 GTTCATGATAATTGTCCATTGTTCATG 57.973 33.333 0.00 13.09 42.02 3.07
255 256 8.751242 TGTTCATGATAATTGTCCATTGTTCAT 58.249 29.630 0.00 0.00 32.92 2.57
256 257 8.120140 TGTTCATGATAATTGTCCATTGTTCA 57.880 30.769 0.00 0.00 0.00 3.18
257 258 8.984891 TTGTTCATGATAATTGTCCATTGTTC 57.015 30.769 0.00 0.00 0.00 3.18
258 259 8.036575 CCTTGTTCATGATAATTGTCCATTGTT 58.963 33.333 0.00 0.00 0.00 2.83
259 260 7.396907 TCCTTGTTCATGATAATTGTCCATTGT 59.603 33.333 0.00 0.00 0.00 2.71
260 261 7.774134 TCCTTGTTCATGATAATTGTCCATTG 58.226 34.615 0.00 0.00 0.00 2.82
261 262 7.959658 TCCTTGTTCATGATAATTGTCCATT 57.040 32.000 0.00 0.00 0.00 3.16
262 263 7.959658 TTCCTTGTTCATGATAATTGTCCAT 57.040 32.000 0.00 0.00 0.00 3.41
263 264 7.773489 TTTCCTTGTTCATGATAATTGTCCA 57.227 32.000 0.00 0.00 0.00 4.02
295 296 9.533831 CCCTAGAGGCAATAATAAAATGGTTAT 57.466 33.333 0.00 0.00 0.00 1.89
296 297 8.934023 CCCTAGAGGCAATAATAAAATGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
297 298 7.839680 CCCTAGAGGCAATAATAAAATGGTT 57.160 36.000 0.00 0.00 0.00 3.67
313 314 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
314 315 6.966534 AATTGTTGGAAATATGCCCTAGAG 57.033 37.500 0.00 0.00 0.00 2.43
315 316 8.859090 CAATAATTGTTGGAAATATGCCCTAGA 58.141 33.333 7.02 0.00 0.00 2.43
316 317 8.641541 ACAATAATTGTTGGAAATATGCCCTAG 58.358 33.333 17.83 0.00 42.22 3.02
317 318 8.546083 ACAATAATTGTTGGAAATATGCCCTA 57.454 30.769 17.83 0.00 42.22 3.53
318 319 7.418942 GGACAATAATTGTTGGAAATATGCCCT 60.419 37.037 17.83 0.00 45.52 5.19
319 320 6.705825 GGACAATAATTGTTGGAAATATGCCC 59.294 38.462 17.83 3.11 45.52 5.36
320 321 7.271511 TGGACAATAATTGTTGGAAATATGCC 58.728 34.615 17.83 7.34 45.52 4.40
321 322 8.891671 ATGGACAATAATTGTTGGAAATATGC 57.108 30.769 17.83 3.35 45.52 3.14
326 327 9.270640 CAGAAAATGGACAATAATTGTTGGAAA 57.729 29.630 17.83 4.45 45.52 3.13
327 328 8.646004 TCAGAAAATGGACAATAATTGTTGGAA 58.354 29.630 17.83 4.77 45.52 3.53
328 329 8.187913 TCAGAAAATGGACAATAATTGTTGGA 57.812 30.769 17.83 3.52 45.52 3.53
329 330 7.063780 GCTCAGAAAATGGACAATAATTGTTGG 59.936 37.037 17.83 2.19 45.52 3.77
330 331 7.599621 TGCTCAGAAAATGGACAATAATTGTTG 59.400 33.333 12.84 12.84 45.52 3.33
341 342 5.591099 TGAAAAACTGCTCAGAAAATGGAC 58.409 37.500 3.60 0.00 0.00 4.02
376 377 9.189156 CTTATTCTTGGAACTGGGATTCAAATA 57.811 33.333 0.00 0.00 0.00 1.40
379 380 6.789268 TCTTATTCTTGGAACTGGGATTCAA 58.211 36.000 0.00 0.00 0.00 2.69
385 386 5.684704 TGCTATCTTATTCTTGGAACTGGG 58.315 41.667 0.00 0.00 0.00 4.45
407 408 3.506067 GTGTCCATTTGTAGGGTTTCCTG 59.494 47.826 0.00 0.00 44.61 3.86
408 409 3.139397 TGTGTCCATTTGTAGGGTTTCCT 59.861 43.478 0.00 0.00 46.96 3.36
412 413 4.644685 GCATATGTGTCCATTTGTAGGGTT 59.355 41.667 4.29 0.00 33.90 4.11
417 418 7.066887 CCAAGTTAGCATATGTGTCCATTTGTA 59.933 37.037 4.29 0.00 33.90 2.41
431 432 6.272324 ACCCTATATTGAGCCAAGTTAGCATA 59.728 38.462 0.00 0.00 0.00 3.14
436 437 6.269307 GGTAGACCCTATATTGAGCCAAGTTA 59.731 42.308 0.00 0.00 0.00 2.24
449 450 2.379567 TGGTATGGCGGTAGACCCTATA 59.620 50.000 0.00 0.00 30.91 1.31
455 462 1.687123 AGTCATGGTATGGCGGTAGAC 59.313 52.381 0.00 0.00 40.53 2.59
462 469 7.744087 TTCAATAACATAGTCATGGTATGGC 57.256 36.000 16.04 0.00 43.00 4.40
491 498 5.292589 GCAGCATGTTTGGATTTCAATTAGG 59.707 40.000 0.00 0.00 39.31 2.69
492 499 5.292589 GGCAGCATGTTTGGATTTCAATTAG 59.707 40.000 0.00 0.00 39.31 1.73
493 500 5.177326 GGCAGCATGTTTGGATTTCAATTA 58.823 37.500 0.00 0.00 39.31 1.40
496 503 2.367894 TGGCAGCATGTTTGGATTTCAA 59.632 40.909 0.00 0.00 39.31 2.69
497 504 1.969208 TGGCAGCATGTTTGGATTTCA 59.031 42.857 0.00 0.00 39.31 2.69
498 505 2.747396 TGGCAGCATGTTTGGATTTC 57.253 45.000 0.00 0.00 39.31 2.17
499 506 2.633967 TCTTGGCAGCATGTTTGGATTT 59.366 40.909 0.00 0.00 39.31 2.17
500 507 2.028748 GTCTTGGCAGCATGTTTGGATT 60.029 45.455 0.00 0.00 39.31 3.01
501 508 1.547372 GTCTTGGCAGCATGTTTGGAT 59.453 47.619 0.00 0.00 39.31 3.41
542 549 0.265553 AGGTGGGCAATAATGGGCAT 59.734 50.000 0.00 0.00 0.00 4.40
590 597 9.733556 TTTGATTTCCTTTCTAGTAGCATGTAA 57.266 29.630 0.00 0.00 0.00 2.41
592 599 8.814038 ATTTGATTTCCTTTCTAGTAGCATGT 57.186 30.769 0.00 0.00 0.00 3.21
593 600 8.066595 CGATTTGATTTCCTTTCTAGTAGCATG 58.933 37.037 0.00 0.00 0.00 4.06
594 601 7.987458 TCGATTTGATTTCCTTTCTAGTAGCAT 59.013 33.333 0.00 0.00 0.00 3.79
595 602 7.327975 TCGATTTGATTTCCTTTCTAGTAGCA 58.672 34.615 0.00 0.00 0.00 3.49
596 603 7.772332 TCGATTTGATTTCCTTTCTAGTAGC 57.228 36.000 0.00 0.00 0.00 3.58
599 606 8.678199 GGATTTCGATTTGATTTCCTTTCTAGT 58.322 33.333 0.00 0.00 0.00 2.57
600 607 8.677300 TGGATTTCGATTTGATTTCCTTTCTAG 58.323 33.333 0.00 0.00 32.07 2.43
601 608 8.574251 TGGATTTCGATTTGATTTCCTTTCTA 57.426 30.769 0.00 0.00 32.07 2.10
602 609 7.466746 TGGATTTCGATTTGATTTCCTTTCT 57.533 32.000 0.00 0.00 32.07 2.52
607 614 6.090763 GTGGTTTGGATTTCGATTTGATTTCC 59.909 38.462 0.00 0.00 0.00 3.13
619 626 3.636764 ACTGGAGTTGTGGTTTGGATTTC 59.363 43.478 0.00 0.00 0.00 2.17
727 735 1.131638 AGTCAAGACTTGCCCACTCA 58.868 50.000 10.50 0.00 38.83 3.41
751 759 7.040755 TGTGAAGACTTGTTTGTCTCAAGAAAA 60.041 33.333 11.72 0.00 45.49 2.29
753 761 5.937540 TGTGAAGACTTGTTTGTCTCAAGAA 59.062 36.000 11.72 0.00 45.49 2.52
755 763 5.801350 TGTGAAGACTTGTTTGTCTCAAG 57.199 39.130 0.00 4.45 45.49 3.02
758 766 7.970614 AGAAAAATGTGAAGACTTGTTTGTCTC 59.029 33.333 0.00 0.00 45.49 3.36
760 768 8.466086 AAGAAAAATGTGAAGACTTGTTTGTC 57.534 30.769 0.00 0.00 37.23 3.18
762 770 8.924691 TCAAAGAAAAATGTGAAGACTTGTTTG 58.075 29.630 0.00 0.00 0.00 2.93
765 773 7.260603 CCTCAAAGAAAAATGTGAAGACTTGT 58.739 34.615 0.00 0.00 0.00 3.16
767 775 6.183360 CCCCTCAAAGAAAAATGTGAAGACTT 60.183 38.462 0.00 0.00 0.00 3.01
768 776 5.302823 CCCCTCAAAGAAAAATGTGAAGACT 59.697 40.000 0.00 0.00 0.00 3.24
769 777 5.509670 CCCCCTCAAAGAAAAATGTGAAGAC 60.510 44.000 0.00 0.00 0.00 3.01
770 778 4.588528 CCCCCTCAAAGAAAAATGTGAAGA 59.411 41.667 0.00 0.00 0.00 2.87
771 779 4.588528 TCCCCCTCAAAGAAAAATGTGAAG 59.411 41.667 0.00 0.00 0.00 3.02
772 780 4.343814 GTCCCCCTCAAAGAAAAATGTGAA 59.656 41.667 0.00 0.00 0.00 3.18
773 781 3.895041 GTCCCCCTCAAAGAAAAATGTGA 59.105 43.478 0.00 0.00 0.00 3.58
774 782 3.640967 TGTCCCCCTCAAAGAAAAATGTG 59.359 43.478 0.00 0.00 0.00 3.21
775 783 3.641436 GTGTCCCCCTCAAAGAAAAATGT 59.359 43.478 0.00 0.00 0.00 2.71
776 784 3.305335 CGTGTCCCCCTCAAAGAAAAATG 60.305 47.826 0.00 0.00 0.00 2.32
777 785 2.890945 CGTGTCCCCCTCAAAGAAAAAT 59.109 45.455 0.00 0.00 0.00 1.82
778 786 2.303175 CGTGTCCCCCTCAAAGAAAAA 58.697 47.619 0.00 0.00 0.00 1.94
779 787 1.213430 ACGTGTCCCCCTCAAAGAAAA 59.787 47.619 0.00 0.00 0.00 2.29
780 788 0.841289 ACGTGTCCCCCTCAAAGAAA 59.159 50.000 0.00 0.00 0.00 2.52
781 789 0.841289 AACGTGTCCCCCTCAAAGAA 59.159 50.000 0.00 0.00 0.00 2.52
782 790 0.841289 AAACGTGTCCCCCTCAAAGA 59.159 50.000 0.00 0.00 0.00 2.52
783 791 1.336755 CAAAACGTGTCCCCCTCAAAG 59.663 52.381 0.00 0.00 0.00 2.77
784 792 1.064611 TCAAAACGTGTCCCCCTCAAA 60.065 47.619 0.00 0.00 0.00 2.69
785 793 0.547075 TCAAAACGTGTCCCCCTCAA 59.453 50.000 0.00 0.00 0.00 3.02
786 794 0.179040 GTCAAAACGTGTCCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
787 795 0.179040 TGTCAAAACGTGTCCCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
788 796 0.476771 ATGTCAAAACGTGTCCCCCT 59.523 50.000 0.00 0.00 0.00 4.79
789 797 1.324383 AATGTCAAAACGTGTCCCCC 58.676 50.000 0.00 0.00 0.00 5.40
790 798 2.100087 ACAAATGTCAAAACGTGTCCCC 59.900 45.455 0.00 0.00 0.00 4.81
791 799 3.112580 CACAAATGTCAAAACGTGTCCC 58.887 45.455 0.00 0.00 0.00 4.46
792 800 4.022464 TCACAAATGTCAAAACGTGTCC 57.978 40.909 0.00 0.00 0.00 4.02
793 801 3.482110 GCTCACAAATGTCAAAACGTGTC 59.518 43.478 0.00 0.00 0.00 3.67
794 802 3.434637 GCTCACAAATGTCAAAACGTGT 58.565 40.909 0.00 0.00 0.00 4.49
797 805 2.715268 ACGCTCACAAATGTCAAAACG 58.285 42.857 0.00 0.00 0.00 3.60
800 808 3.347958 GGAACGCTCACAAATGTCAAA 57.652 42.857 0.00 0.00 0.00 2.69
820 828 4.025401 GTGAAGTTGGTGCGCCCG 62.025 66.667 15.15 0.00 35.15 6.13
825 833 3.670377 GGCCCGTGAAGTTGGTGC 61.670 66.667 0.00 0.00 0.00 5.01
856 864 0.178915 TTTTGAGGGGTCCGGAGAGA 60.179 55.000 3.06 0.00 0.00 3.10
858 866 0.178915 TCTTTTGAGGGGTCCGGAGA 60.179 55.000 3.06 0.00 0.00 3.71
1291 1317 0.037590 AAGCACAATTCTACGGCCCA 59.962 50.000 0.00 0.00 0.00 5.36
1294 1320 1.076332 ACGAAGCACAATTCTACGGC 58.924 50.000 0.00 0.00 0.00 5.68
1299 1329 2.687935 ACAAACCACGAAGCACAATTCT 59.312 40.909 0.00 0.00 0.00 2.40
1333 1363 3.558931 TTATCGCCTCCATGAACACAT 57.441 42.857 0.00 0.00 0.00 3.21
1337 1367 3.214328 ACCAATTATCGCCTCCATGAAC 58.786 45.455 0.00 0.00 0.00 3.18
1339 1369 3.576078 AACCAATTATCGCCTCCATGA 57.424 42.857 0.00 0.00 0.00 3.07
1345 1375 3.945346 TGTGTGTAACCAATTATCGCCT 58.055 40.909 0.00 0.00 34.36 5.52
1353 1383 3.352648 GCAGGGTATGTGTGTAACCAAT 58.647 45.455 0.00 0.00 33.68 3.16
1375 1405 3.902881 ACATGTCTGAGATCCCAAGAC 57.097 47.619 11.33 11.33 0.00 3.01
1436 1466 2.290641 GGCTGCGTCAATTAATTCGGAT 59.709 45.455 10.27 0.00 0.00 4.18
1440 1470 5.931441 ATAGAGGCTGCGTCAATTAATTC 57.069 39.130 22.55 0.00 0.00 2.17
1480 1892 7.918536 ATTAAATGATGCAGCCTCTATACAG 57.081 36.000 0.00 0.00 0.00 2.74
1512 1924 7.215743 AGTAACTCAATCTACTACTCCCTCT 57.784 40.000 0.00 0.00 0.00 3.69
1572 2203 1.066430 ACCAGCTTACCCATACACGTG 60.066 52.381 15.48 15.48 0.00 4.49
1623 2254 9.561069 AAGACAACACTATTAAGATGAACAGTT 57.439 29.630 0.00 0.00 0.00 3.16
1668 2315 1.317613 GCAATGTGTTGTCCTCCACA 58.682 50.000 0.00 0.00 44.91 4.17
1726 2373 2.168936 TGGTAGGTGGCATTAGGTAACG 59.831 50.000 0.00 0.00 46.39 3.18
1736 2383 3.023119 CTGCATAATTTGGTAGGTGGCA 58.977 45.455 0.00 0.00 0.00 4.92
1795 2442 4.142622 CCAGTGTATAAGCCATTGTGTGTG 60.143 45.833 0.00 0.00 0.00 3.82
1825 2472 1.067635 GGCTGCATGTTGGTACCAAAG 60.068 52.381 28.67 21.50 37.70 2.77
1838 2485 1.180029 GTGAAGGAATGTGGCTGCAT 58.820 50.000 0.50 0.00 0.00 3.96
1891 2541 3.824443 ACGTTCTTTGGTAAATTCCAGGG 59.176 43.478 0.00 0.00 38.80 4.45
1963 2613 1.191647 GCAAACACGTTAGGAGACACG 59.808 52.381 0.00 0.00 42.29 4.49
2009 2659 2.045926 ATTCACGGGCTGAGGTGC 60.046 61.111 0.00 0.00 34.20 5.01
2127 2777 4.086457 TGTAGCACATACTTCAGGTGAGA 58.914 43.478 0.00 0.00 41.53 3.27
2143 2793 5.508825 GGGTGACAATGATTTTGTTGTAGCA 60.509 40.000 0.00 0.00 38.57 3.49
2550 3200 4.521146 AGGAGACACATTGGAACATGATC 58.479 43.478 0.00 0.00 39.30 2.92
2677 3327 3.921119 TTCACACCAAATGATGACTGC 57.079 42.857 0.00 0.00 0.00 4.40
2780 3430 7.461182 TGGGAAATAACACAGAATTACTTGG 57.539 36.000 0.00 0.00 0.00 3.61
2827 3477 4.406648 AGGTACGCATGAATCATTCTCA 57.593 40.909 0.00 0.00 0.00 3.27
2839 3489 4.766375 AGTTTGCATAGTAAGGTACGCAT 58.234 39.130 0.00 0.00 0.00 4.73
2842 3492 8.644318 AAAGATAGTTTGCATAGTAAGGTACG 57.356 34.615 0.00 0.00 0.00 3.67
2843 3493 9.819267 AGAAAGATAGTTTGCATAGTAAGGTAC 57.181 33.333 0.00 0.00 0.00 3.34
2860 3510 6.347696 AGGCAGACTGAATGAAGAAAGATAG 58.652 40.000 6.65 0.00 0.00 2.08
2898 3548 6.877236 TGTGCATCACTATGACTTTCAGATA 58.123 36.000 0.00 0.00 34.84 1.98
2906 3556 3.254060 GTCGTTGTGCATCACTATGACT 58.746 45.455 19.11 0.00 45.40 3.41
3074 3724 8.278729 TCAAATGTTCTTTTGCCAAGAAAAAT 57.721 26.923 9.21 5.02 37.93 1.82
3364 4014 4.762251 GTCTTGGATCTGCTGGTAACTTTT 59.238 41.667 0.00 0.00 37.61 2.27
3374 4024 2.244486 TCCTGAGTCTTGGATCTGCT 57.756 50.000 0.00 0.00 0.00 4.24
3542 4192 8.676401 TGACAATGGTGATTTTGTATCATACAG 58.324 33.333 0.00 0.00 40.24 2.74
3809 4631 9.167311 ACTACTAAAAATGGAAGCTTAGTCATG 57.833 33.333 0.00 0.00 36.33 3.07
3830 4652 7.888021 TCATGAACCAAAAACCATATCACTACT 59.112 33.333 0.00 0.00 0.00 2.57
3843 4671 8.634335 TGATCTCAGTTATCATGAACCAAAAA 57.366 30.769 0.00 0.00 0.00 1.94
3946 4774 0.313672 TTCAGCCAAACAACGGATGC 59.686 50.000 0.00 0.00 39.83 3.91
3957 4785 1.340889 GCCTGAACAATGTTCAGCCAA 59.659 47.619 37.25 14.83 43.33 4.52
4000 4828 4.268884 GCTTTGTACAGCTAGCATACAGAC 59.731 45.833 23.21 16.18 36.79 3.51
4077 4905 1.659794 CAAAAGTGGACCCTTGCCG 59.340 57.895 0.00 0.00 0.00 5.69
4203 5117 3.207474 CAGCCTTGCACATGAAAGTAC 57.793 47.619 0.00 0.00 0.00 2.73
4243 5157 2.170187 TGTTTGGCAGCAGTTTCCATTT 59.830 40.909 0.00 0.00 0.00 2.32
4304 5221 4.214971 CCAGTCAAGTCCATCAAACTTCTG 59.785 45.833 0.00 0.00 34.79 3.02
4414 5331 8.709386 ATGGCAATAGTATAAGTTCGATGATC 57.291 34.615 0.00 0.00 0.00 2.92
4420 5337 8.491152 CAAGAAGATGGCAATAGTATAAGTTCG 58.509 37.037 0.00 0.00 0.00 3.95
4421 5338 8.286097 GCAAGAAGATGGCAATAGTATAAGTTC 58.714 37.037 0.00 0.00 0.00 3.01
4637 5554 4.381863 CACTTACTTGCTACACACGTACAG 59.618 45.833 0.00 0.00 33.13 2.74
4696 5613 7.387948 ACAAGATTATTCAACACACAGGAGTAC 59.612 37.037 0.00 0.00 0.00 2.73
4786 5709 4.525912 ATCAGCAATCCCTTCAAAACAC 57.474 40.909 0.00 0.00 0.00 3.32
4851 5774 3.745803 GAGGCAGCAAGGCAGCAC 61.746 66.667 7.86 0.00 42.80 4.40
5018 5941 9.976511 CCTATCATCAACAGCATTATCAAAAAT 57.023 29.630 0.00 0.00 0.00 1.82
5224 6147 2.228545 TGGCCATAAAAGCACCATGA 57.771 45.000 0.00 0.00 0.00 3.07
5251 6174 4.877823 TCATCACTACAGCACATCAAATCC 59.122 41.667 0.00 0.00 0.00 3.01
5318 6241 4.885413 TGACCAAATTCATTCTTGCTTGG 58.115 39.130 0.00 0.00 0.00 3.61
5335 6258 0.249868 CCACGTCTTCAAGCTGACCA 60.250 55.000 0.00 0.00 0.00 4.02
5386 6309 4.032900 ACAACGCTGCTATTGTTATCTTCG 59.967 41.667 11.86 0.00 35.51 3.79
5437 6360 0.107508 AGTGACCTGCCCAATCATCG 60.108 55.000 0.00 0.00 0.00 3.84
5449 6372 4.457949 AGTCGTTTTGTTTCAAAGTGACCT 59.542 37.500 17.02 8.55 0.00 3.85
5484 6407 1.835531 TCTGGATCAGCTCATCTTGCA 59.164 47.619 0.00 0.00 0.00 4.08
5488 6411 3.385433 CAGTCTTCTGGATCAGCTCATCT 59.615 47.826 0.00 0.00 37.97 2.90
5620 6569 3.435186 GCTCTTGCAGGTTCCGCC 61.435 66.667 0.00 0.00 39.41 6.13
5635 6584 1.426621 CTCGTCATGCATTTGCGCT 59.573 52.632 9.73 0.00 45.83 5.92
5791 6746 7.095355 CCGGCTCGCATATTACTTTAAGTTAAT 60.095 37.037 1.94 4.36 0.00 1.40
6010 6986 4.219070 AGCATAGCACACACACAATCAATT 59.781 37.500 0.00 0.00 0.00 2.32
6012 6988 3.148412 AGCATAGCACACACACAATCAA 58.852 40.909 0.00 0.00 0.00 2.57
6085 7068 3.194542 CACCAAATTGGGCCGAAAAGATA 59.805 43.478 17.27 0.00 43.37 1.98
6093 7076 0.319469 GAACACACCAAATTGGGCCG 60.319 55.000 17.27 6.87 43.37 6.13
6143 7126 1.974957 GTAGTTGGCCCACCCATTTTT 59.025 47.619 2.72 0.00 44.89 1.94
6220 7208 5.847670 GTGATTACACCACTGAAAGAGTC 57.152 43.478 0.00 0.00 40.74 3.36
6292 7283 9.282569 ACAGAAGGAATATTGATCTAAATGCTC 57.717 33.333 0.00 0.00 0.00 4.26
6348 7339 8.339714 CGATGTAAACACTCTTTACAAAAGGAA 58.660 33.333 9.16 0.00 44.80 3.36
6349 7340 7.519328 GCGATGTAAACACTCTTTACAAAAGGA 60.519 37.037 9.16 0.00 44.80 3.36
6350 7341 6.577427 GCGATGTAAACACTCTTTACAAAAGG 59.423 38.462 9.16 2.44 44.80 3.11
6351 7342 7.129622 TGCGATGTAAACACTCTTTACAAAAG 58.870 34.615 9.16 5.87 44.80 2.27
6352 7343 7.017498 TGCGATGTAAACACTCTTTACAAAA 57.983 32.000 9.16 0.00 44.80 2.44
6353 7344 6.606234 TGCGATGTAAACACTCTTTACAAA 57.394 33.333 9.16 0.00 44.80 2.83
6354 7345 6.259167 ACTTGCGATGTAAACACTCTTTACAA 59.741 34.615 9.16 0.00 44.80 2.41
6355 7346 5.756347 ACTTGCGATGTAAACACTCTTTACA 59.244 36.000 7.84 7.84 45.43 2.41
6356 7347 6.224420 ACTTGCGATGTAAACACTCTTTAC 57.776 37.500 0.00 0.00 35.91 2.01
6357 7348 8.033038 AGATACTTGCGATGTAAACACTCTTTA 58.967 33.333 0.00 0.00 0.00 1.85
6358 7349 6.874134 AGATACTTGCGATGTAAACACTCTTT 59.126 34.615 0.00 0.00 0.00 2.52
6364 7355 5.522460 GGCTAAGATACTTGCGATGTAAACA 59.478 40.000 0.00 0.00 0.00 2.83
6370 7361 5.473931 ACATAGGCTAAGATACTTGCGATG 58.526 41.667 3.41 0.00 0.00 3.84
6374 7365 7.210873 ACAGTAACATAGGCTAAGATACTTGC 58.789 38.462 14.57 0.00 0.00 4.01
6387 7378 8.786826 TCATAGACCAAAAACAGTAACATAGG 57.213 34.615 0.00 0.00 0.00 2.57
6389 7380 9.562408 TGTTCATAGACCAAAAACAGTAACATA 57.438 29.630 0.00 0.00 0.00 2.29
6390 7381 8.349983 GTGTTCATAGACCAAAAACAGTAACAT 58.650 33.333 0.00 0.00 31.04 2.71
6391 7382 7.201750 GGTGTTCATAGACCAAAAACAGTAACA 60.202 37.037 0.00 0.00 37.63 2.41
6392 7383 7.012989 AGGTGTTCATAGACCAAAAACAGTAAC 59.987 37.037 0.00 0.00 40.13 2.50
6438 7431 1.602888 ACGGAGTGTGTCGCTAGGT 60.603 57.895 0.00 0.00 42.51 3.08
6456 7449 1.649321 AGCTGGAGGTCTCAACATCA 58.351 50.000 0.14 0.00 37.94 3.07
6457 7450 2.354259 CAAGCTGGAGGTCTCAACATC 58.646 52.381 0.00 0.00 35.46 3.06
6458 7451 1.004044 CCAAGCTGGAGGTCTCAACAT 59.996 52.381 0.00 0.00 40.96 2.71
6459 7452 0.397941 CCAAGCTGGAGGTCTCAACA 59.602 55.000 0.00 0.00 40.96 3.33
6460 7453 0.687354 TCCAAGCTGGAGGTCTCAAC 59.313 55.000 0.00 0.00 42.67 3.18
6461 7454 3.164024 TCCAAGCTGGAGGTCTCAA 57.836 52.632 0.00 0.00 42.67 3.02
6462 7455 4.975490 TCCAAGCTGGAGGTCTCA 57.025 55.556 0.00 0.00 42.67 3.27
6469 7462 4.020617 CTGGCCGTCCAAGCTGGA 62.021 66.667 0.00 0.00 45.98 3.86
6472 7465 3.574074 ATTGCTGGCCGTCCAAGCT 62.574 57.895 12.74 0.00 42.91 3.74
6587 7580 2.103771 AGTCGTCGCTAGGTGGTCTATA 59.896 50.000 0.00 0.00 0.00 1.31
6618 7611 3.112709 GCGTCTTCGGCTCGCTTT 61.113 61.111 0.00 0.00 45.29 3.51
6659 7652 0.687354 AAGTTGTGCCCGACTCTGAT 59.313 50.000 0.00 0.00 34.00 2.90
6660 7653 0.249868 CAAGTTGTGCCCGACTCTGA 60.250 55.000 0.00 0.00 34.00 3.27
6662 7655 0.180406 AACAAGTTGTGCCCGACTCT 59.820 50.000 9.79 0.00 34.00 3.24
6674 7667 4.261909 CCCGACTGTCTACTACAACAAGTT 60.262 45.833 6.21 0.00 37.74 2.66
6703 7696 0.687354 CTATGGGGCCTTAGCACGAT 59.313 55.000 0.84 0.00 46.55 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.