Multiple sequence alignment - TraesCS4B01G347700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G347700 chr4B 100.000 5573 0 0 1 5573 641411125 641416697 0.000000e+00 10292.0
1 TraesCS4B01G347700 chr5A 84.558 2286 157 103 228 2446 679737828 679739984 0.000000e+00 2085.0
2 TraesCS4B01G347700 chr5A 90.271 884 60 19 3837 4707 679741725 679742595 0.000000e+00 1133.0
3 TraesCS4B01G347700 chr5A 88.800 125 3 2 3352 3465 679741294 679741418 5.820000e-30 143.0
4 TraesCS4B01G347700 chr5A 84.058 138 9 6 61 187 679737680 679737815 2.730000e-23 121.0
5 TraesCS4B01G347700 chr5A 77.567 263 18 18 2614 2860 679740683 679740920 2.730000e-23 121.0
6 TraesCS4B01G347700 chr5A 77.297 185 35 7 1853 2032 326058081 326057899 9.880000e-18 102.0
7 TraesCS4B01G347700 chr5A 100.000 33 0 0 1 33 679725347 679725379 1.680000e-05 62.1
8 TraesCS4B01G347700 chr4D 85.876 2117 102 72 1 2047 498948138 498950127 0.000000e+00 2071.0
9 TraesCS4B01G347700 chr4D 91.364 1158 45 26 3573 4707 498951495 498952620 0.000000e+00 1533.0
10 TraesCS4B01G347700 chr4D 89.557 881 38 26 4719 5573 498952595 498953447 0.000000e+00 1068.0
11 TraesCS4B01G347700 chr4D 85.801 331 25 10 2498 2825 498950479 498950790 1.160000e-86 331.0
12 TraesCS4B01G347700 chr4D 83.163 392 33 16 3097 3468 498951082 498951460 1.500000e-85 327.0
13 TraesCS4B01G347700 chr4D 86.747 249 8 6 2156 2380 498950219 498950466 2.580000e-63 254.0
14 TraesCS4B01G347700 chr1A 88.608 158 16 2 1077 1233 360009534 360009690 2.050000e-44 191.0
15 TraesCS4B01G347700 chr1A 80.296 203 30 8 1834 2032 359981179 359980983 1.620000e-30 145.0
16 TraesCS4B01G347700 chr1A 76.796 181 35 7 1850 2025 62254231 62254053 1.650000e-15 95.3
17 TraesCS4B01G347700 chr2D 78.736 174 37 0 1852 2025 560991570 560991743 3.530000e-22 117.0
18 TraesCS4B01G347700 chr5D 77.297 185 35 7 1853 2032 230505349 230505531 9.880000e-18 102.0
19 TraesCS4B01G347700 chr1B 77.401 177 33 7 1851 2022 100631361 100631535 1.280000e-16 99.0
20 TraesCS4B01G347700 chr1B 88.710 62 7 0 1185 1246 100308696 100308757 5.990000e-10 76.8
21 TraesCS4B01G347700 chr1D 76.836 177 34 7 1851 2022 63357378 63357552 5.940000e-15 93.5
22 TraesCS4B01G347700 chr1D 88.710 62 7 0 1185 1246 62858083 62858144 5.990000e-10 76.8
23 TraesCS4B01G347700 chr7A 76.608 171 29 10 1077 1243 669727872 669728035 3.580000e-12 84.2
24 TraesCS4B01G347700 chr7A 87.931 58 6 1 1192 1248 646585282 646585225 3.600000e-07 67.6
25 TraesCS4B01G347700 chr7B 79.130 115 21 3 1853 1964 463622799 463622913 5.990000e-10 76.8
26 TraesCS4B01G347700 chr7B 75.949 158 29 8 1090 1243 640914947 640915099 7.740000e-09 73.1
27 TraesCS4B01G347700 chr3D 88.889 54 5 1 1185 1237 600135015 600134962 1.300000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G347700 chr4B 641411125 641416697 5572 False 10292.000000 10292 100.000000 1 5573 1 chr4B.!!$F1 5572
1 TraesCS4B01G347700 chr5A 679737680 679742595 4915 False 720.600000 2085 85.050800 61 4707 5 chr5A.!!$F2 4646
2 TraesCS4B01G347700 chr4D 498948138 498953447 5309 False 930.666667 2071 87.084667 1 5573 6 chr4D.!!$F1 5572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.037697 CATCGGACCGAGGACACAAA 60.038 55.0 23.64 0.0 40.15 2.83 F
1274 1348 0.108520 TCGCAATTCGGTACCTCCAC 60.109 55.0 10.90 0.0 39.05 4.02 F
2319 2507 0.033920 GAAAAGCAAGCAACCAGGGG 59.966 55.0 0.00 0.0 0.00 4.79 F
2448 2645 0.040157 CCAACCTGCACACAACGATG 60.040 55.0 0.00 0.0 0.00 3.84 F
3172 4001 0.104855 GTGTGGCTGACAGTGAGTGA 59.895 55.0 3.99 0.0 34.28 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1663 0.179000 GTCACCATTCAGCTCCCGAT 59.821 55.0 0.00 0.0 0.00 4.18 R
3106 3920 0.035739 AAGGAGTTTTTAGCCCGCGA 59.964 50.0 8.23 0.0 0.00 5.87 R
4075 4964 0.039256 GGTGGTGACTACGTGCGTAA 60.039 55.0 0.00 0.0 0.00 3.18 R
4079 4968 0.388649 CTGAGGTGGTGACTACGTGC 60.389 60.0 0.00 0.0 0.00 5.34 R
5025 5938 0.463654 TGCTGGACACAGTGGTTGAC 60.464 55.0 5.31 0.0 46.62 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.952296 CTGAAGCAAAGCCAACTCACT 59.048 47.619 0.00 0.00 0.00 3.41
55 56 6.710744 CACTCTTAATTTCACACCCAACTACT 59.289 38.462 0.00 0.00 0.00 2.57
57 58 8.603304 ACTCTTAATTTCACACCCAACTACTAT 58.397 33.333 0.00 0.00 0.00 2.12
60 61 8.726870 TTAATTTCACACCCAACTACTATAGC 57.273 34.615 0.00 0.00 0.00 2.97
61 62 6.561519 ATTTCACACCCAACTACTATAGCT 57.438 37.500 0.00 0.00 0.00 3.32
62 63 7.670605 ATTTCACACCCAACTACTATAGCTA 57.329 36.000 0.00 0.00 0.00 3.32
63 64 7.484993 TTTCACACCCAACTACTATAGCTAA 57.515 36.000 0.00 0.00 0.00 3.09
64 65 6.461110 TCACACCCAACTACTATAGCTAAC 57.539 41.667 0.00 0.00 0.00 2.34
65 66 6.192773 TCACACCCAACTACTATAGCTAACT 58.807 40.000 0.00 0.00 0.00 2.24
66 67 6.320672 TCACACCCAACTACTATAGCTAACTC 59.679 42.308 0.00 0.00 0.00 3.01
67 68 6.096423 CACACCCAACTACTATAGCTAACTCA 59.904 42.308 0.00 0.00 0.00 3.41
68 69 6.321690 ACACCCAACTACTATAGCTAACTCAG 59.678 42.308 0.00 0.00 0.00 3.35
79 80 3.011119 AGCTAACTCAGTCTAGGACACG 58.989 50.000 0.00 0.00 34.60 4.49
91 92 1.140375 GGACACGGTACATCGGACC 59.860 63.158 0.00 0.00 0.00 4.46
100 101 0.322726 TACATCGGACCGAGGACACA 60.323 55.000 33.16 13.13 40.15 3.72
101 102 1.183030 ACATCGGACCGAGGACACAA 61.183 55.000 33.16 2.46 40.15 3.33
102 103 0.037697 CATCGGACCGAGGACACAAA 60.038 55.000 23.64 0.00 40.15 2.83
105 106 1.076533 CGGACCGAGGACACAAATCG 61.077 60.000 8.64 0.00 36.24 3.34
178 190 2.882137 CGTTGTAGGGGACACACAAATT 59.118 45.455 0.00 0.00 38.66 1.82
187 199 2.417243 GGACACACAAATTGCATAGGCC 60.417 50.000 0.00 0.00 40.13 5.19
252 264 2.493278 CCCGTTTTTGGCATCAGATTCT 59.507 45.455 0.00 0.00 0.00 2.40
278 290 0.884704 GCGGAACAGAAACTGCTGGA 60.885 55.000 0.00 0.00 40.20 3.86
375 409 1.301244 CTAATCATCTGCGGCGCCT 60.301 57.895 30.82 11.42 0.00 5.52
426 460 4.492160 TCGGTCTCGCCACATCGC 62.492 66.667 0.00 0.00 36.97 4.58
474 508 1.324736 GACACTGTCCGATCGAATTGC 59.675 52.381 18.66 2.17 0.00 3.56
477 511 1.490693 CTGTCCGATCGAATTGCCCG 61.491 60.000 18.66 0.00 0.00 6.13
480 514 1.227263 CCGATCGAATTGCCCGTCT 60.227 57.895 18.66 0.00 0.00 4.18
486 520 1.683790 CGAATTGCCCGTCTGTCGAC 61.684 60.000 9.11 9.11 42.86 4.20
488 522 3.642778 ATTGCCCGTCTGTCGACCG 62.643 63.158 14.12 6.91 42.86 4.79
493 534 2.022902 CGTCTGTCGACCGATCCG 59.977 66.667 14.12 9.22 42.86 4.18
514 569 2.952310 GTCCCCAGTAAATCAATCTGCC 59.048 50.000 0.00 0.00 0.00 4.85
515 570 2.852449 TCCCCAGTAAATCAATCTGCCT 59.148 45.455 0.00 0.00 0.00 4.75
537 592 6.348868 GCCTCAGATCAAAACTGAAAAGGTAG 60.349 42.308 0.00 0.00 42.58 3.18
538 593 6.712547 CCTCAGATCAAAACTGAAAAGGTAGT 59.287 38.462 0.00 0.00 42.58 2.73
546 601 9.675464 TCAAAACTGAAAAGGTAGTAAGAAAGA 57.325 29.630 0.00 0.00 0.00 2.52
550 605 9.457436 AACTGAAAAGGTAGTAAGAAAGAACAA 57.543 29.630 0.00 0.00 0.00 2.83
560 615 6.739112 AGTAAGAAAGAACAAGCATTTCACC 58.261 36.000 0.00 0.00 35.79 4.02
569 624 0.447801 AGCATTTCACCGATGAACGC 59.552 50.000 5.15 5.15 44.66 4.84
570 625 0.857311 GCATTTCACCGATGAACGCG 60.857 55.000 3.53 3.53 44.66 6.01
579 642 0.246912 CGATGAACGCGTCTTTCTGC 60.247 55.000 14.44 2.21 34.51 4.26
676 739 5.392767 TCTCTTCCACTAAGCTAGTTGTG 57.607 43.478 0.00 0.00 36.76 3.33
677 740 3.926616 TCTTCCACTAAGCTAGTTGTGC 58.073 45.455 0.00 0.00 36.76 4.57
678 741 3.578716 TCTTCCACTAAGCTAGTTGTGCT 59.421 43.478 0.00 0.00 43.32 4.40
679 742 4.770531 TCTTCCACTAAGCTAGTTGTGCTA 59.229 41.667 0.00 0.00 40.22 3.49
680 743 4.451629 TCCACTAAGCTAGTTGTGCTAC 57.548 45.455 0.00 0.00 40.22 3.58
681 744 4.087182 TCCACTAAGCTAGTTGTGCTACT 58.913 43.478 0.00 0.00 40.22 2.57
687 750 1.135199 GCTAGTTGTGCTACTACGCCA 60.135 52.381 0.00 0.00 0.00 5.69
705 768 0.392193 CACTCTCACCACATGGCTCC 60.392 60.000 0.00 0.00 39.32 4.70
808 880 1.209504 CTCGGCTCCATCCTTAACCAA 59.790 52.381 0.00 0.00 0.00 3.67
809 881 1.631388 TCGGCTCCATCCTTAACCAAA 59.369 47.619 0.00 0.00 0.00 3.28
810 882 2.017049 CGGCTCCATCCTTAACCAAAG 58.983 52.381 0.00 0.00 34.73 2.77
811 883 2.618045 CGGCTCCATCCTTAACCAAAGT 60.618 50.000 0.00 0.00 32.89 2.66
812 884 3.431415 GGCTCCATCCTTAACCAAAGTT 58.569 45.455 0.00 0.00 40.15 2.66
813 885 4.595986 GGCTCCATCCTTAACCAAAGTTA 58.404 43.478 0.00 0.00 37.42 2.24
814 886 5.014202 GGCTCCATCCTTAACCAAAGTTAA 58.986 41.667 0.00 0.00 44.34 2.01
828 900 5.817816 ACCAAAGTTAAGAAGATAGCATCGG 59.182 40.000 0.00 0.00 0.00 4.18
837 909 1.004560 ATAGCATCGGCATCCCACG 60.005 57.895 0.00 0.00 44.61 4.94
928 1002 0.179234 TCGAGGATTAATTGCCGCCA 59.821 50.000 0.00 0.00 0.00 5.69
958 1032 2.949447 AGCAAGACCTGAATTGGTTGT 58.051 42.857 0.00 0.00 41.00 3.32
960 1034 2.887152 GCAAGACCTGAATTGGTTGTCT 59.113 45.455 0.00 0.00 41.00 3.41
1066 1140 3.174987 TGTCCCTGGTGGTGGTGG 61.175 66.667 0.00 0.00 34.77 4.61
1170 1244 2.673523 CAGGAGGTCAGCAAGGGG 59.326 66.667 0.00 0.00 0.00 4.79
1243 1317 0.732880 CTGCTTCGTCAGGGTACGTG 60.733 60.000 0.00 0.00 46.70 4.49
1265 1339 2.225068 ACTACTCCATCGCAATTCGG 57.775 50.000 0.00 0.00 39.05 4.30
1274 1348 0.108520 TCGCAATTCGGTACCTCCAC 60.109 55.000 10.90 0.00 39.05 4.02
1276 1350 0.252197 GCAATTCGGTACCTCCACCT 59.748 55.000 10.90 0.00 36.35 4.00
1278 1352 1.134491 CAATTCGGTACCTCCACCTCC 60.134 57.143 10.90 0.00 36.35 4.30
1299 1381 1.710816 CTAGCTCCGATTCCCTTCCT 58.289 55.000 0.00 0.00 0.00 3.36
1301 1383 0.833949 AGCTCCGATTCCCTTCCTTC 59.166 55.000 0.00 0.00 0.00 3.46
1302 1384 0.179043 GCTCCGATTCCCTTCCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
1304 1386 1.771255 CTCCGATTCCCTTCCTTCCAT 59.229 52.381 0.00 0.00 0.00 3.41
1305 1387 1.490490 TCCGATTCCCTTCCTTCCATG 59.510 52.381 0.00 0.00 0.00 3.66
1317 1399 1.280133 CCTTCCATGGACAAGAGCTCA 59.720 52.381 15.91 0.00 0.00 4.26
1339 1421 1.165907 TCTCTTGTTGCTTGGCGTGG 61.166 55.000 0.00 0.00 0.00 4.94
1361 1450 1.581223 TCGAGGTCAGAGGTAGGAGA 58.419 55.000 0.00 0.00 0.00 3.71
1362 1451 1.487142 TCGAGGTCAGAGGTAGGAGAG 59.513 57.143 0.00 0.00 0.00 3.20
1363 1452 1.487142 CGAGGTCAGAGGTAGGAGAGA 59.513 57.143 0.00 0.00 0.00 3.10
1372 1461 7.328737 GTCAGAGGTAGGAGAGATAGATAGAC 58.671 46.154 0.00 0.00 0.00 2.59
1402 1511 0.745845 GCGGTGAGTGATCCAATGCT 60.746 55.000 0.00 0.00 0.00 3.79
1438 1547 1.299976 GGATCGGTGTCCTTGGCTT 59.700 57.895 0.00 0.00 35.32 4.35
1507 1616 1.876664 GCTTCGGCAGTTTCTTCCC 59.123 57.895 0.00 0.00 41.33 3.97
1545 1654 2.472909 GCAAGTGGTAGATGCGGGC 61.473 63.158 0.00 0.00 0.00 6.13
1546 1655 1.078497 CAAGTGGTAGATGCGGGCA 60.078 57.895 0.00 0.00 0.00 5.36
1547 1656 0.464373 CAAGTGGTAGATGCGGGCAT 60.464 55.000 5.73 5.73 39.69 4.40
1548 1657 0.464373 AAGTGGTAGATGCGGGCATG 60.464 55.000 11.44 0.00 36.70 4.06
1550 1659 2.069430 TGGTAGATGCGGGCATGGA 61.069 57.895 11.44 0.00 36.70 3.41
1551 1660 1.376466 GGTAGATGCGGGCATGGAT 59.624 57.895 11.44 0.00 36.70 3.41
1552 1661 0.674895 GGTAGATGCGGGCATGGATC 60.675 60.000 11.44 0.00 36.70 3.36
1554 1663 1.184970 TAGATGCGGGCATGGATCGA 61.185 55.000 11.44 0.00 41.12 3.59
1555 1664 1.376424 GATGCGGGCATGGATCGAT 60.376 57.895 11.44 0.00 36.70 3.59
1558 1667 2.433145 CGGGCATGGATCGATCGG 60.433 66.667 18.81 11.86 0.00 4.18
1559 1668 2.046892 GGGCATGGATCGATCGGG 60.047 66.667 18.81 11.52 0.00 5.14
1560 1669 2.583441 GGGCATGGATCGATCGGGA 61.583 63.158 18.81 6.13 0.00 5.14
1561 1670 1.079543 GGCATGGATCGATCGGGAG 60.080 63.158 18.81 9.83 0.00 4.30
1562 1671 1.739562 GCATGGATCGATCGGGAGC 60.740 63.158 18.81 15.31 0.00 4.70
1563 1672 1.970639 CATGGATCGATCGGGAGCT 59.029 57.895 18.81 0.00 0.00 4.09
1610 1727 4.524802 TGCCATATGAGTCCATCCTTTT 57.475 40.909 3.65 0.00 34.31 2.27
1612 1729 3.823304 GCCATATGAGTCCATCCTTTTCC 59.177 47.826 3.65 0.00 34.31 3.13
1613 1730 4.067896 CCATATGAGTCCATCCTTTTCCG 58.932 47.826 3.65 0.00 34.31 4.30
1746 1869 3.438216 TGCTTTCATTCATGGACCTGA 57.562 42.857 0.00 0.00 0.00 3.86
1748 1871 3.084039 GCTTTCATTCATGGACCTGACA 58.916 45.455 0.00 0.00 0.00 3.58
1749 1872 3.698040 GCTTTCATTCATGGACCTGACAT 59.302 43.478 0.00 0.00 0.00 3.06
1750 1873 4.201990 GCTTTCATTCATGGACCTGACATC 60.202 45.833 0.00 0.00 0.00 3.06
1751 1874 4.573021 TTCATTCATGGACCTGACATCA 57.427 40.909 0.00 0.00 0.00 3.07
1752 1875 4.783560 TCATTCATGGACCTGACATCAT 57.216 40.909 0.00 0.00 0.00 2.45
1753 1876 5.892524 TCATTCATGGACCTGACATCATA 57.107 39.130 0.00 0.00 0.00 2.15
1754 1877 6.443995 TCATTCATGGACCTGACATCATAT 57.556 37.500 0.00 0.00 0.00 1.78
1756 1879 7.618137 TCATTCATGGACCTGACATCATATAG 58.382 38.462 0.00 0.00 0.00 1.31
1806 1929 2.890474 GCGGCCGACGTGATTCAT 60.890 61.111 33.48 0.00 46.52 2.57
1807 1930 3.005898 CGGCCGACGTGATTCATG 58.994 61.111 24.07 4.29 37.93 3.07
1834 1957 2.949451 TTGATGTTTGTTTGCGGTGT 57.051 40.000 0.00 0.00 0.00 4.16
1836 1959 1.202348 TGATGTTTGTTTGCGGTGTGG 60.202 47.619 0.00 0.00 0.00 4.17
1837 1960 0.820871 ATGTTTGTTTGCGGTGTGGT 59.179 45.000 0.00 0.00 0.00 4.16
1838 1961 0.109086 TGTTTGTTTGCGGTGTGGTG 60.109 50.000 0.00 0.00 0.00 4.17
1839 1962 0.109039 GTTTGTTTGCGGTGTGGTGT 60.109 50.000 0.00 0.00 0.00 4.16
1840 1963 0.171455 TTTGTTTGCGGTGTGGTGTC 59.829 50.000 0.00 0.00 0.00 3.67
1932 2055 2.815647 CCGCCAAACTCGAGCCTC 60.816 66.667 13.61 0.00 0.00 4.70
2059 2223 1.343506 CCTGGTACGTTACGTTCAGC 58.656 55.000 24.39 15.76 41.54 4.26
2061 2225 2.608752 CCTGGTACGTTACGTTCAGCTT 60.609 50.000 24.39 2.13 41.54 3.74
2065 2229 3.363128 GGTACGTTACGTTCAGCTTCTTC 59.637 47.826 17.42 0.00 41.54 2.87
2067 2231 2.223876 ACGTTACGTTCAGCTTCTTCCA 60.224 45.455 3.95 0.00 36.35 3.53
2069 2233 3.432252 CGTTACGTTCAGCTTCTTCCATT 59.568 43.478 0.00 0.00 0.00 3.16
2071 2235 3.126001 ACGTTCAGCTTCTTCCATTCA 57.874 42.857 0.00 0.00 0.00 2.57
2072 2236 2.808543 ACGTTCAGCTTCTTCCATTCAC 59.191 45.455 0.00 0.00 0.00 3.18
2073 2237 3.070018 CGTTCAGCTTCTTCCATTCACT 58.930 45.455 0.00 0.00 0.00 3.41
2076 2240 5.482908 GTTCAGCTTCTTCCATTCACTAGA 58.517 41.667 0.00 0.00 0.00 2.43
2077 2241 5.336150 TCAGCTTCTTCCATTCACTAGAG 57.664 43.478 0.00 0.00 0.00 2.43
2078 2242 4.161189 TCAGCTTCTTCCATTCACTAGAGG 59.839 45.833 0.00 0.00 0.00 3.69
2079 2243 4.081198 CAGCTTCTTCCATTCACTAGAGGT 60.081 45.833 0.00 0.00 0.00 3.85
2081 2245 4.081420 GCTTCTTCCATTCACTAGAGGTCA 60.081 45.833 0.00 0.00 0.00 4.02
2082 2246 5.407407 TTCTTCCATTCACTAGAGGTCAC 57.593 43.478 0.00 0.00 0.00 3.67
2083 2247 3.769844 TCTTCCATTCACTAGAGGTCACC 59.230 47.826 0.00 0.00 0.00 4.02
2084 2248 2.100197 TCCATTCACTAGAGGTCACCG 58.900 52.381 0.00 0.00 0.00 4.94
2085 2249 1.825474 CCATTCACTAGAGGTCACCGT 59.175 52.381 0.00 0.00 0.00 4.83
2086 2250 2.417379 CCATTCACTAGAGGTCACCGTG 60.417 54.545 0.00 0.00 0.00 4.94
2087 2251 1.991121 TTCACTAGAGGTCACCGTGT 58.009 50.000 0.00 0.00 0.00 4.49
2088 2252 1.244816 TCACTAGAGGTCACCGTGTG 58.755 55.000 0.00 3.08 34.45 3.82
2089 2253 0.959553 CACTAGAGGTCACCGTGTGT 59.040 55.000 0.00 0.00 34.79 3.72
2090 2254 0.959553 ACTAGAGGTCACCGTGTGTG 59.040 55.000 0.00 0.00 46.88 3.82
2091 2255 0.959553 CTAGAGGTCACCGTGTGTGT 59.040 55.000 0.00 0.00 45.61 3.72
2092 2256 0.671796 TAGAGGTCACCGTGTGTGTG 59.328 55.000 0.00 0.00 45.61 3.82
2093 2257 1.143183 GAGGTCACCGTGTGTGTGT 59.857 57.895 0.00 0.00 45.61 3.72
2094 2258 1.151777 GAGGTCACCGTGTGTGTGTG 61.152 60.000 0.00 0.00 45.61 3.82
2095 2259 1.448893 GGTCACCGTGTGTGTGTGT 60.449 57.895 0.00 0.00 45.61 3.72
2096 2260 1.701545 GGTCACCGTGTGTGTGTGTG 61.702 60.000 0.00 0.00 45.61 3.82
2097 2261 1.017177 GTCACCGTGTGTGTGTGTGT 61.017 55.000 0.00 0.00 45.61 3.72
2098 2262 1.016653 TCACCGTGTGTGTGTGTGTG 61.017 55.000 0.00 0.00 45.61 3.82
2099 2263 1.004320 ACCGTGTGTGTGTGTGTGT 60.004 52.632 0.00 0.00 0.00 3.72
2100 2264 1.295357 ACCGTGTGTGTGTGTGTGTG 61.295 55.000 0.00 0.00 0.00 3.82
2101 2265 1.295357 CCGTGTGTGTGTGTGTGTGT 61.295 55.000 0.00 0.00 0.00 3.72
2102 2266 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2132 2296 3.445450 GTGTGTCAGGAGCTTCTATGAGA 59.555 47.826 0.00 0.00 0.00 3.27
2133 2297 3.698539 TGTGTCAGGAGCTTCTATGAGAG 59.301 47.826 0.00 0.00 0.00 3.20
2143 2307 2.846039 TCTATGAGAGTTCGTTCGGC 57.154 50.000 0.00 0.00 0.00 5.54
2144 2308 2.089201 TCTATGAGAGTTCGTTCGGCA 58.911 47.619 0.00 0.00 0.00 5.69
2240 2404 4.570772 CGATCTCCGATCAAGCCTTTTTAA 59.429 41.667 4.90 0.00 41.76 1.52
2318 2506 0.318955 CGAAAAGCAAGCAACCAGGG 60.319 55.000 0.00 0.00 0.00 4.45
2319 2507 0.033920 GAAAAGCAAGCAACCAGGGG 59.966 55.000 0.00 0.00 0.00 4.79
2347 2535 0.040692 GAACCGACCGCCTTTTGTTC 60.041 55.000 0.00 0.00 0.00 3.18
2383 2571 2.047655 CCGAAGGCCGCACTAACA 60.048 61.111 0.00 0.00 46.14 2.41
2384 2572 2.100631 CCGAAGGCCGCACTAACAG 61.101 63.158 0.00 0.00 46.14 3.16
2392 2580 1.327764 GCCGCACTAACAGCAGTAATC 59.672 52.381 0.00 0.00 0.00 1.75
2393 2581 1.933853 CCGCACTAACAGCAGTAATCC 59.066 52.381 0.00 0.00 0.00 3.01
2394 2582 2.418746 CCGCACTAACAGCAGTAATCCT 60.419 50.000 0.00 0.00 0.00 3.24
2395 2583 2.860735 CGCACTAACAGCAGTAATCCTC 59.139 50.000 0.00 0.00 0.00 3.71
2416 2613 7.778781 TCCTCTCCTAGTCCTATACTACTACT 58.221 42.308 0.00 0.00 39.80 2.57
2417 2614 7.895429 TCCTCTCCTAGTCCTATACTACTACTC 59.105 44.444 0.00 0.00 39.80 2.59
2440 2637 4.519612 TGCCTGCCAACCTGCACA 62.520 61.111 0.00 0.00 36.04 4.57
2446 2643 2.477176 GCCAACCTGCACACAACGA 61.477 57.895 0.00 0.00 0.00 3.85
2447 2644 1.795170 GCCAACCTGCACACAACGAT 61.795 55.000 0.00 0.00 0.00 3.73
2448 2645 0.040157 CCAACCTGCACACAACGATG 60.040 55.000 0.00 0.00 0.00 3.84
2449 2646 0.661187 CAACCTGCACACAACGATGC 60.661 55.000 0.00 0.00 42.40 3.91
2450 2647 1.795170 AACCTGCACACAACGATGCC 61.795 55.000 0.00 0.00 41.33 4.40
2451 2648 2.174107 CTGCACACAACGATGCCG 59.826 61.111 0.00 0.00 41.33 5.69
2452 2649 2.280457 TGCACACAACGATGCCGA 60.280 55.556 0.00 0.00 41.33 5.54
2453 2650 2.231745 CTGCACACAACGATGCCGAG 62.232 60.000 0.00 0.00 41.33 4.63
2454 2651 2.476051 CACACAACGATGCCGAGC 59.524 61.111 0.00 0.00 39.50 5.03
2455 2652 2.029288 CACACAACGATGCCGAGCT 61.029 57.895 0.00 0.00 39.50 4.09
2457 2654 2.507102 ACAACGATGCCGAGCTCG 60.507 61.111 29.06 29.06 40.62 5.03
2503 2994 3.027170 CTGTTCGCGTGGCCATCAC 62.027 63.158 9.72 0.00 42.74 3.06
2534 3027 4.515567 GTGTTCCGTTTTCAGGAGAAAGAT 59.484 41.667 0.00 0.00 44.03 2.40
2576 3072 1.604604 TACTTTGAGCCTGTTGCCAC 58.395 50.000 0.00 0.00 42.71 5.01
2581 3077 1.598130 GAGCCTGTTGCCACTCGTT 60.598 57.895 0.00 0.00 42.71 3.85
2582 3078 1.152963 AGCCTGTTGCCACTCGTTT 60.153 52.632 0.00 0.00 42.71 3.60
2642 3373 2.852495 AAGATGGGTGCGCGTAGTGG 62.852 60.000 8.43 0.00 39.19 4.00
2647 3378 2.509336 GTGCGCGTAGTGGCAGAT 60.509 61.111 8.43 0.00 39.44 2.90
2688 3423 2.202932 CCGGTCTCGATGCAAGGG 60.203 66.667 0.00 0.00 39.00 3.95
2696 3431 2.305853 CGATGCAAGGGAGATCGCG 61.306 63.158 0.00 0.00 33.26 5.87
2697 3432 1.958205 GATGCAAGGGAGATCGCGG 60.958 63.158 6.13 0.00 0.00 6.46
2708 3443 3.445518 GATCGCGGACTGCATCCCA 62.446 63.158 6.13 0.00 46.04 4.37
2723 3470 2.037136 CCCAGCGCAGGAAGTTCAG 61.037 63.158 21.96 0.00 0.00 3.02
2760 3507 1.221840 GCTCTTTCCCGATGCAGGA 59.778 57.895 0.00 0.00 0.00 3.86
2761 3508 0.179034 GCTCTTTCCCGATGCAGGAT 60.179 55.000 0.00 0.00 32.10 3.24
2762 3509 1.748591 GCTCTTTCCCGATGCAGGATT 60.749 52.381 0.00 0.00 32.10 3.01
2763 3510 1.945394 CTCTTTCCCGATGCAGGATTG 59.055 52.381 0.00 0.00 32.10 2.67
2793 3540 9.662947 GCCCTTAATTACTTCTTCAGTTAGTTA 57.337 33.333 0.00 0.00 36.88 2.24
2825 3572 4.104143 CGGTACAATCCGCTGGTC 57.896 61.111 0.00 0.00 43.96 4.02
2836 3583 1.831286 CGCTGGTCGGTAGGGGTAT 60.831 63.158 0.00 0.00 33.78 2.73
2837 3584 1.803366 CGCTGGTCGGTAGGGGTATC 61.803 65.000 0.00 0.00 33.78 2.24
2838 3585 1.803366 GCTGGTCGGTAGGGGTATCG 61.803 65.000 0.00 0.00 0.00 2.92
2854 3601 1.693627 ATCGGTACTGCTGGTAGGAG 58.306 55.000 0.00 0.00 39.79 3.69
2862 3614 0.614697 TGCTGGTAGGAGCAGTGCTA 60.615 55.000 19.77 0.00 44.16 3.49
2863 3615 0.537188 GCTGGTAGGAGCAGTGCTAA 59.463 55.000 19.77 3.68 44.96 3.09
2864 3616 1.740718 GCTGGTAGGAGCAGTGCTAAC 60.741 57.143 19.77 16.00 44.96 2.34
2865 3617 0.902531 TGGTAGGAGCAGTGCTAACC 59.097 55.000 26.04 26.04 39.88 2.85
2866 3618 0.902531 GGTAGGAGCAGTGCTAACCA 59.097 55.000 27.08 10.14 39.88 3.67
2867 3619 1.405661 GGTAGGAGCAGTGCTAACCAC 60.406 57.143 27.08 18.68 39.88 4.16
2894 3646 4.775780 ACTGTAGTGGCAGGAGTATTTGTA 59.224 41.667 0.00 0.00 40.59 2.41
2898 3650 5.700402 AGTGGCAGGAGTATTTGTAGATT 57.300 39.130 0.00 0.00 0.00 2.40
2901 3653 6.599638 AGTGGCAGGAGTATTTGTAGATTTTC 59.400 38.462 0.00 0.00 0.00 2.29
2907 3659 6.317391 AGGAGTATTTGTAGATTTTCAGCTGC 59.683 38.462 9.47 0.00 0.00 5.25
2910 3662 8.792830 AGTATTTGTAGATTTTCAGCTGCTTA 57.207 30.769 9.47 0.00 0.00 3.09
2933 3685 2.884639 AGCAGTTAATGTGTTGTGGGTC 59.115 45.455 0.00 0.00 0.00 4.46
2942 3694 4.629523 TTGTGGGTCGTTCGGGGC 62.630 66.667 0.00 0.00 0.00 5.80
2947 3699 2.428925 GGGTCGTTCGGGGCTGATA 61.429 63.158 0.00 0.00 0.00 2.15
2948 3700 1.227176 GGTCGTTCGGGGCTGATAC 60.227 63.158 0.00 0.00 0.00 2.24
2949 3701 1.588139 GTCGTTCGGGGCTGATACG 60.588 63.158 0.00 0.00 0.00 3.06
2972 3745 2.911509 ACCGTTGCAGCATTGGCA 60.912 55.556 12.30 0.00 44.61 4.92
2975 3748 1.079875 CCGTTGCAGCATTGGCATTC 61.080 55.000 0.00 0.00 44.61 2.67
2979 3752 2.162754 GCAGCATTGGCATTCGTGC 61.163 57.895 6.58 6.58 44.61 5.34
2981 3754 1.509463 AGCATTGGCATTCGTGCTG 59.491 52.632 13.85 0.00 45.44 4.41
2993 3766 0.389025 TCGTGCTGCTCTTTCACTGA 59.611 50.000 0.00 0.00 0.00 3.41
2994 3767 0.510359 CGTGCTGCTCTTTCACTGAC 59.490 55.000 0.00 0.00 0.00 3.51
2997 3770 1.339929 TGCTGCTCTTTCACTGACGTA 59.660 47.619 0.00 0.00 0.00 3.57
2999 3772 1.979469 CTGCTCTTTCACTGACGTACG 59.021 52.381 15.01 15.01 0.00 3.67
3001 3774 1.978542 CTCTTTCACTGACGTACGGG 58.021 55.000 21.06 11.51 0.00 5.28
3002 3775 0.599558 TCTTTCACTGACGTACGGGG 59.400 55.000 21.06 11.15 0.00 5.73
3003 3776 1.005867 TTTCACTGACGTACGGGGC 60.006 57.895 21.06 9.07 0.00 5.80
3004 3777 2.438951 TTTCACTGACGTACGGGGCC 62.439 60.000 21.06 0.00 0.00 5.80
3028 3801 5.601662 TGTTTCAAGTCGAATCTCAACTCT 58.398 37.500 0.00 0.00 32.32 3.24
3029 3802 5.692204 TGTTTCAAGTCGAATCTCAACTCTC 59.308 40.000 0.00 0.00 32.32 3.20
3030 3803 5.453567 TTCAAGTCGAATCTCAACTCTCA 57.546 39.130 0.00 0.00 0.00 3.27
3031 3804 5.651387 TCAAGTCGAATCTCAACTCTCAT 57.349 39.130 0.00 0.00 0.00 2.90
3032 3805 5.645624 TCAAGTCGAATCTCAACTCTCATC 58.354 41.667 0.00 0.00 0.00 2.92
3033 3806 5.183904 TCAAGTCGAATCTCAACTCTCATCA 59.816 40.000 0.00 0.00 0.00 3.07
3034 3807 4.992688 AGTCGAATCTCAACTCTCATCAC 58.007 43.478 0.00 0.00 0.00 3.06
3035 3808 3.788694 GTCGAATCTCAACTCTCATCACG 59.211 47.826 0.00 0.00 0.00 4.35
3036 3809 3.111838 CGAATCTCAACTCTCATCACGG 58.888 50.000 0.00 0.00 0.00 4.94
3040 3813 2.890945 TCTCAACTCTCATCACGGACAA 59.109 45.455 0.00 0.00 0.00 3.18
3041 3814 3.057245 TCTCAACTCTCATCACGGACAAG 60.057 47.826 0.00 0.00 0.00 3.16
3043 3816 3.511540 TCAACTCTCATCACGGACAAGAT 59.488 43.478 0.00 0.00 0.00 2.40
3044 3817 4.705023 TCAACTCTCATCACGGACAAGATA 59.295 41.667 0.00 0.00 0.00 1.98
3045 3818 5.360999 TCAACTCTCATCACGGACAAGATAT 59.639 40.000 0.00 0.00 0.00 1.63
3046 3819 5.446143 ACTCTCATCACGGACAAGATATC 57.554 43.478 0.00 0.00 0.00 1.63
3047 3820 4.279671 ACTCTCATCACGGACAAGATATCC 59.720 45.833 0.00 0.00 0.00 2.59
3048 3821 4.474394 TCTCATCACGGACAAGATATCCT 58.526 43.478 0.00 0.00 33.70 3.24
3049 3822 4.895889 TCTCATCACGGACAAGATATCCTT 59.104 41.667 0.00 0.00 33.70 3.36
3051 3824 4.649218 TCATCACGGACAAGATATCCTTCA 59.351 41.667 0.00 0.00 33.70 3.02
3052 3825 4.386867 TCACGGACAAGATATCCTTCAC 57.613 45.455 0.00 0.00 33.70 3.18
3053 3826 3.116300 CACGGACAAGATATCCTTCACG 58.884 50.000 0.00 2.35 33.70 4.35
3058 3831 5.350365 CGGACAAGATATCCTTCACGAAAAA 59.650 40.000 0.00 0.00 33.70 1.94
3083 3865 4.022589 CGTTAGTCCTGAACACTTGGTAGA 60.023 45.833 0.00 0.00 0.00 2.59
3085 3867 6.465084 GTTAGTCCTGAACACTTGGTAGAAT 58.535 40.000 0.00 0.00 0.00 2.40
3087 3869 5.941788 AGTCCTGAACACTTGGTAGAATTT 58.058 37.500 0.00 0.00 0.00 1.82
3089 3871 5.531287 GTCCTGAACACTTGGTAGAATTTGT 59.469 40.000 0.00 0.00 0.00 2.83
3090 3872 5.530915 TCCTGAACACTTGGTAGAATTTGTG 59.469 40.000 0.00 0.00 0.00 3.33
3091 3873 5.278463 CCTGAACACTTGGTAGAATTTGTGG 60.278 44.000 0.00 0.00 0.00 4.17
3092 3874 4.037446 TGAACACTTGGTAGAATTTGTGGC 59.963 41.667 0.00 0.00 0.00 5.01
3093 3875 2.890945 ACACTTGGTAGAATTTGTGGCC 59.109 45.455 0.00 0.00 0.00 5.36
3094 3876 2.890311 CACTTGGTAGAATTTGTGGCCA 59.110 45.455 0.00 0.00 0.00 5.36
3095 3877 3.320541 CACTTGGTAGAATTTGTGGCCAA 59.679 43.478 7.24 0.00 35.13 4.52
3096 3878 3.320826 ACTTGGTAGAATTTGTGGCCAAC 59.679 43.478 7.24 2.03 33.18 3.77
3097 3879 3.237268 TGGTAGAATTTGTGGCCAACT 57.763 42.857 7.24 3.01 0.00 3.16
3099 3881 2.161609 GGTAGAATTTGTGGCCAACTCG 59.838 50.000 7.24 0.00 0.00 4.18
3100 3882 1.981256 AGAATTTGTGGCCAACTCGT 58.019 45.000 7.24 0.00 0.00 4.18
3102 3884 2.693074 AGAATTTGTGGCCAACTCGTTT 59.307 40.909 7.24 0.00 0.00 3.60
3103 3885 2.507339 ATTTGTGGCCAACTCGTTTG 57.493 45.000 7.24 0.00 34.63 2.93
3106 3920 1.178276 TGTGGCCAACTCGTTTGTTT 58.822 45.000 7.24 0.00 32.71 2.83
3109 3923 0.933047 GGCCAACTCGTTTGTTTCGC 60.933 55.000 0.00 0.00 32.71 4.70
3133 3947 4.000988 GGCTAAAAACTCCTTGACGATCA 58.999 43.478 0.00 0.00 0.00 2.92
3169 3998 0.105593 AGTGTGTGGCTGACAGTGAG 59.894 55.000 3.99 0.00 34.28 3.51
3170 3999 0.179073 GTGTGTGGCTGACAGTGAGT 60.179 55.000 3.99 0.00 34.28 3.41
3171 4000 0.179076 TGTGTGGCTGACAGTGAGTG 60.179 55.000 3.99 0.00 34.28 3.51
3172 4001 0.104855 GTGTGGCTGACAGTGAGTGA 59.895 55.000 3.99 0.00 34.28 3.41
3173 4002 0.104855 TGTGGCTGACAGTGAGTGAC 59.895 55.000 3.99 0.00 0.00 3.67
3174 4003 0.104855 GTGGCTGACAGTGAGTGACA 59.895 55.000 3.99 0.00 0.00 3.58
3177 4006 1.495878 GCTGACAGTGAGTGACAGTG 58.504 55.000 18.18 0.00 46.84 3.66
3184 4013 2.555199 AGTGAGTGACAGTGAACTTGC 58.445 47.619 0.00 0.00 0.00 4.01
3185 4014 2.093500 AGTGAGTGACAGTGAACTTGCA 60.093 45.455 0.00 0.00 0.00 4.08
3186 4015 2.874701 GTGAGTGACAGTGAACTTGCAT 59.125 45.455 0.00 0.00 0.00 3.96
3187 4016 3.313526 GTGAGTGACAGTGAACTTGCATT 59.686 43.478 0.00 0.00 0.00 3.56
3188 4017 3.561310 TGAGTGACAGTGAACTTGCATTC 59.439 43.478 0.00 0.00 0.00 2.67
3189 4018 3.544684 AGTGACAGTGAACTTGCATTCA 58.455 40.909 0.00 0.00 36.23 2.57
3190 4019 3.562973 AGTGACAGTGAACTTGCATTCAG 59.437 43.478 2.97 0.00 39.25 3.02
3200 4029 2.039480 ACTTGCATTCAGAGAGCTGGAA 59.961 45.455 0.00 0.00 42.53 3.53
3215 4048 1.236616 TGGAAACAGCACATCAGGCG 61.237 55.000 0.00 0.00 36.08 5.52
3227 4063 1.879380 CATCAGGCGAACAACCTTGAA 59.121 47.619 0.00 0.00 34.42 2.69
3229 4065 2.370349 TCAGGCGAACAACCTTGAAAA 58.630 42.857 0.00 0.00 34.42 2.29
3246 4082 5.682943 TGAAAAGAAAAGGACATGTACCG 57.317 39.130 3.84 0.00 0.00 4.02
3252 4088 0.537188 AAGGACATGTACCGGCAGAG 59.463 55.000 3.84 0.00 0.00 3.35
3253 4089 1.521681 GGACATGTACCGGCAGAGC 60.522 63.158 0.00 0.00 0.00 4.09
3254 4090 1.218047 GACATGTACCGGCAGAGCA 59.782 57.895 0.00 0.00 0.00 4.26
3267 4103 4.521062 GAGCAGAGCGCCGGTGAT 62.521 66.667 21.76 14.25 44.04 3.06
3334 4180 1.528586 CTGGCGGCGATAATCAAAGAG 59.471 52.381 12.98 0.00 0.00 2.85
3338 4184 1.070134 CGGCGATAATCAAAGAGGGGA 59.930 52.381 0.00 0.00 0.00 4.81
3347 4193 7.824289 CGATAATCAAAGAGGGGATGCTATTTA 59.176 37.037 0.00 0.00 0.00 1.40
3348 4194 9.692325 GATAATCAAAGAGGGGATGCTATTTAT 57.308 33.333 0.00 0.00 0.00 1.40
3349 4195 7.771927 AATCAAAGAGGGGATGCTATTTATG 57.228 36.000 0.00 0.00 0.00 1.90
3350 4196 6.266131 TCAAAGAGGGGATGCTATTTATGT 57.734 37.500 0.00 0.00 0.00 2.29
3366 4212 6.786843 ATTTATGTAGGGGATCTTGGTCAT 57.213 37.500 0.00 0.00 0.00 3.06
3426 4279 2.096496 ACTAGTTTACGTGGATCCGTCG 59.904 50.000 21.90 21.90 42.00 5.12
3468 4325 2.028420 TGCCATGATTTCTGTCTCCG 57.972 50.000 0.00 0.00 0.00 4.63
3473 4330 2.363788 TGATTTCTGTCTCCGTTCCG 57.636 50.000 0.00 0.00 0.00 4.30
3474 4331 1.890489 TGATTTCTGTCTCCGTTCCGA 59.110 47.619 0.00 0.00 0.00 4.55
3475 4332 2.094700 TGATTTCTGTCTCCGTTCCGAG 60.095 50.000 0.00 0.00 0.00 4.63
3478 4335 3.685214 CTGTCTCCGTTCCGAGCCG 62.685 68.421 0.00 0.00 0.00 5.52
3479 4336 3.745803 GTCTCCGTTCCGAGCCGT 61.746 66.667 0.00 0.00 0.00 5.68
3480 4337 3.437795 TCTCCGTTCCGAGCCGTC 61.438 66.667 0.00 0.00 0.00 4.79
3481 4338 4.831307 CTCCGTTCCGAGCCGTCG 62.831 72.222 0.00 0.00 46.39 5.12
3485 4342 4.790861 GTTCCGAGCCGTCGTCCC 62.791 72.222 0.00 0.00 45.30 4.46
3525 4382 2.050350 CCGAGCCGTCCTCCACTTA 61.050 63.158 0.00 0.00 37.27 2.24
3529 4386 1.067821 GAGCCGTCCTCCACTTAGATG 59.932 57.143 0.00 0.00 34.35 2.90
3531 4388 0.105039 CCGTCCTCCACTTAGATGGC 59.895 60.000 0.00 0.00 39.85 4.40
3634 4496 2.152699 GTCCATGTGACGCGTCTCG 61.153 63.158 36.27 21.55 45.38 4.04
3739 4615 4.367023 TGTACTGCCGCCACCGAC 62.367 66.667 0.00 0.00 36.29 4.79
3812 4688 4.929808 TCTAATGGCGTCTTCTCTGAAAAC 59.070 41.667 0.00 0.00 0.00 2.43
3814 4690 1.067974 TGGCGTCTTCTCTGAAAACGA 59.932 47.619 9.86 0.00 35.45 3.85
3854 4743 3.376540 GTGAAAATGGCGTGCAGTTTTA 58.623 40.909 0.00 0.00 0.00 1.52
3861 4750 4.217754 TGGCGTGCAGTTTTAGTTTTAG 57.782 40.909 0.00 0.00 0.00 1.85
3862 4751 3.628487 TGGCGTGCAGTTTTAGTTTTAGT 59.372 39.130 0.00 0.00 0.00 2.24
3865 4754 5.379827 GCGTGCAGTTTTAGTTTTAGTAGG 58.620 41.667 0.00 0.00 0.00 3.18
3867 4756 6.128363 GCGTGCAGTTTTAGTTTTAGTAGGAT 60.128 38.462 0.00 0.00 0.00 3.24
3870 4759 7.174426 GTGCAGTTTTAGTTTTAGTAGGATGGT 59.826 37.037 0.00 0.00 0.00 3.55
3890 4779 5.543714 TGGTAATTAACTGACGATGTGTGT 58.456 37.500 1.50 0.00 0.00 3.72
4075 4964 2.408241 GGTCGCGCTCTCAGGTACT 61.408 63.158 5.56 0.00 43.88 2.73
4077 4966 0.731417 GTCGCGCTCTCAGGTACTTA 59.269 55.000 5.56 0.00 34.60 2.24
4078 4967 0.731417 TCGCGCTCTCAGGTACTTAC 59.269 55.000 5.56 0.00 34.60 2.34
4079 4968 0.589229 CGCGCTCTCAGGTACTTACG 60.589 60.000 5.56 0.00 34.60 3.18
4080 4969 0.866483 GCGCTCTCAGGTACTTACGC 60.866 60.000 0.00 0.00 34.60 4.42
4098 4987 0.388649 GCACGTAGTCACCACCTCAG 60.389 60.000 0.00 0.00 41.61 3.35
4101 4990 1.597461 GTAGTCACCACCTCAGCCC 59.403 63.158 0.00 0.00 0.00 5.19
4102 4991 1.157513 TAGTCACCACCTCAGCCCA 59.842 57.895 0.00 0.00 0.00 5.36
4103 4992 1.192146 TAGTCACCACCTCAGCCCAC 61.192 60.000 0.00 0.00 0.00 4.61
4105 4994 3.941188 CACCACCTCAGCCCACGT 61.941 66.667 0.00 0.00 0.00 4.49
4106 4995 2.203728 ACCACCTCAGCCCACGTA 60.204 61.111 0.00 0.00 0.00 3.57
4107 4996 2.264794 CCACCTCAGCCCACGTAC 59.735 66.667 0.00 0.00 0.00 3.67
4108 4997 2.283529 CCACCTCAGCCCACGTACT 61.284 63.158 0.00 0.00 0.00 2.73
4109 4998 1.079819 CACCTCAGCCCACGTACTG 60.080 63.158 6.16 6.16 35.15 2.74
4110 4999 1.228769 ACCTCAGCCCACGTACTGA 60.229 57.895 12.79 12.79 40.54 3.41
4111 5000 0.830444 ACCTCAGCCCACGTACTGAA 60.830 55.000 13.94 2.25 42.12 3.02
4131 5020 2.697761 CGACGGCCCGAGAGAGAAA 61.698 63.158 11.71 0.00 0.00 2.52
4132 5021 1.139947 GACGGCCCGAGAGAGAAAG 59.860 63.158 11.71 0.00 0.00 2.62
4133 5022 1.304217 ACGGCCCGAGAGAGAAAGA 60.304 57.895 11.71 0.00 0.00 2.52
4134 5023 0.684805 ACGGCCCGAGAGAGAAAGAT 60.685 55.000 11.71 0.00 0.00 2.40
4138 5027 2.939756 GGCCCGAGAGAGAAAGATTTTC 59.060 50.000 0.00 0.00 0.00 2.29
4139 5028 3.369997 GGCCCGAGAGAGAAAGATTTTCT 60.370 47.826 3.86 3.86 0.00 2.52
4140 5029 3.620821 GCCCGAGAGAGAAAGATTTTCTG 59.379 47.826 8.66 0.00 0.00 3.02
4141 5030 4.621747 GCCCGAGAGAGAAAGATTTTCTGA 60.622 45.833 8.66 0.00 0.00 3.27
4142 5031 4.867608 CCCGAGAGAGAAAGATTTTCTGAC 59.132 45.833 8.66 3.48 0.00 3.51
4143 5032 5.337169 CCCGAGAGAGAAAGATTTTCTGACT 60.337 44.000 8.66 7.52 0.00 3.41
4144 5033 5.576384 CCGAGAGAGAAAGATTTTCTGACTG 59.424 44.000 8.66 4.20 0.00 3.51
4145 5034 6.385843 CGAGAGAGAAAGATTTTCTGACTGA 58.614 40.000 8.66 0.00 0.00 3.41
4146 5035 6.865726 CGAGAGAGAAAGATTTTCTGACTGAA 59.134 38.462 8.66 0.00 0.00 3.02
4147 5036 7.545265 CGAGAGAGAAAGATTTTCTGACTGAAT 59.455 37.037 8.66 0.00 34.24 2.57
4148 5037 8.550710 AGAGAGAAAGATTTTCTGACTGAATG 57.449 34.615 8.66 0.00 34.24 2.67
4149 5038 7.607223 AGAGAGAAAGATTTTCTGACTGAATGG 59.393 37.037 8.66 0.00 34.24 3.16
4150 5039 7.456725 AGAGAAAGATTTTCTGACTGAATGGA 58.543 34.615 8.66 0.00 34.24 3.41
4151 5040 7.390162 AGAGAAAGATTTTCTGACTGAATGGAC 59.610 37.037 8.66 0.00 34.24 4.02
4153 5042 7.668886 AGAAAGATTTTCTGACTGAATGGACAT 59.331 33.333 3.43 0.00 34.24 3.06
4157 5046 5.947228 TTTCTGACTGAATGGACATGAAC 57.053 39.130 0.00 0.00 34.24 3.18
4161 5050 3.503363 TGACTGAATGGACATGAACTTGC 59.497 43.478 0.00 0.00 0.00 4.01
4163 5052 3.755378 ACTGAATGGACATGAACTTGCTC 59.245 43.478 0.00 0.00 0.00 4.26
4283 5172 2.125512 CTACCTGGCCACGCTCAC 60.126 66.667 0.00 0.00 0.00 3.51
4485 5374 0.250338 GCACCTTCCAGACCGACTTT 60.250 55.000 0.00 0.00 0.00 2.66
4634 5523 9.111613 TCTAGTATAGAGTGTAAGAAGCTGTTC 57.888 37.037 0.00 0.00 44.15 3.18
4639 5528 3.502920 AGTGTAAGAAGCTGTTCGATCG 58.497 45.455 9.36 9.36 37.79 3.69
4640 5529 3.190744 AGTGTAAGAAGCTGTTCGATCGA 59.809 43.478 15.15 15.15 37.79 3.59
4643 5532 3.791973 AAGAAGCTGTTCGATCGATCT 57.208 42.857 20.18 14.43 37.79 2.75
4644 5533 3.077229 AGAAGCTGTTCGATCGATCTG 57.923 47.619 20.18 21.21 37.79 2.90
4646 5535 3.628032 AGAAGCTGTTCGATCGATCTGTA 59.372 43.478 20.18 0.00 37.79 2.74
4647 5536 3.341857 AGCTGTTCGATCGATCTGTAC 57.658 47.619 20.18 14.04 0.00 2.90
4650 5548 4.212425 AGCTGTTCGATCGATCTGTACTAG 59.788 45.833 20.18 13.40 0.00 2.57
4658 5556 6.150809 TCGATCGATCTGTACTAGTAGCTAGA 59.849 42.308 22.43 8.19 37.49 2.43
4688 5586 2.164332 TAGCCCCACCGTCCTCTCTT 62.164 60.000 0.00 0.00 0.00 2.85
4689 5587 3.020237 GCCCCACCGTCCTCTCTTC 62.020 68.421 0.00 0.00 0.00 2.87
4690 5588 1.305381 CCCCACCGTCCTCTCTTCT 60.305 63.158 0.00 0.00 0.00 2.85
4691 5589 0.905337 CCCCACCGTCCTCTCTTCTT 60.905 60.000 0.00 0.00 0.00 2.52
4692 5590 0.533032 CCCACCGTCCTCTCTTCTTC 59.467 60.000 0.00 0.00 0.00 2.87
4693 5591 1.551452 CCACCGTCCTCTCTTCTTCT 58.449 55.000 0.00 0.00 0.00 2.85
4694 5592 1.896465 CCACCGTCCTCTCTTCTTCTT 59.104 52.381 0.00 0.00 0.00 2.52
4695 5593 2.094442 CCACCGTCCTCTCTTCTTCTTC 60.094 54.545 0.00 0.00 0.00 2.87
4696 5594 2.823154 CACCGTCCTCTCTTCTTCTTCT 59.177 50.000 0.00 0.00 0.00 2.85
4697 5595 3.257127 CACCGTCCTCTCTTCTTCTTCTT 59.743 47.826 0.00 0.00 0.00 2.52
4698 5596 3.508402 ACCGTCCTCTCTTCTTCTTCTTC 59.492 47.826 0.00 0.00 0.00 2.87
4699 5597 3.761752 CCGTCCTCTCTTCTTCTTCTTCT 59.238 47.826 0.00 0.00 0.00 2.85
4700 5598 4.219725 CCGTCCTCTCTTCTTCTTCTTCTT 59.780 45.833 0.00 0.00 0.00 2.52
4701 5599 5.399013 CGTCCTCTCTTCTTCTTCTTCTTC 58.601 45.833 0.00 0.00 0.00 2.87
4702 5600 5.183140 CGTCCTCTCTTCTTCTTCTTCTTCT 59.817 44.000 0.00 0.00 0.00 2.85
4703 5601 6.294508 CGTCCTCTCTTCTTCTTCTTCTTCTT 60.295 42.308 0.00 0.00 0.00 2.52
4704 5602 7.090808 GTCCTCTCTTCTTCTTCTTCTTCTTC 58.909 42.308 0.00 0.00 0.00 2.87
4705 5603 7.010160 TCCTCTCTTCTTCTTCTTCTTCTTCT 58.990 38.462 0.00 0.00 0.00 2.85
4706 5604 7.508977 TCCTCTCTTCTTCTTCTTCTTCTTCTT 59.491 37.037 0.00 0.00 0.00 2.52
4707 5605 7.814587 CCTCTCTTCTTCTTCTTCTTCTTCTTC 59.185 40.741 0.00 0.00 0.00 2.87
4708 5606 8.477419 TCTCTTCTTCTTCTTCTTCTTCTTCT 57.523 34.615 0.00 0.00 0.00 2.85
4709 5607 8.923270 TCTCTTCTTCTTCTTCTTCTTCTTCTT 58.077 33.333 0.00 0.00 0.00 2.52
4710 5608 9.196552 CTCTTCTTCTTCTTCTTCTTCTTCTTC 57.803 37.037 0.00 0.00 0.00 2.87
4711 5609 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
4712 5610 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
4713 5611 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
4714 5612 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
4715 5613 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
4716 5614 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
4717 5615 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
4718 5616 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
4719 5617 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
4720 5618 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
4721 5619 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
4722 5620 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
4723 5621 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
4724 5622 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
4738 5636 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
4741 5639 8.147704 TCTTCTTCTTCTTCTTCTTCTTCTTCC 58.852 37.037 0.00 0.00 0.00 3.46
4743 5641 7.666623 TCTTCTTCTTCTTCTTCTTCTTCCTC 58.333 38.462 0.00 0.00 0.00 3.71
4744 5642 6.985653 TCTTCTTCTTCTTCTTCTTCCTCA 57.014 37.500 0.00 0.00 0.00 3.86
4745 5643 7.552050 TCTTCTTCTTCTTCTTCTTCCTCAT 57.448 36.000 0.00 0.00 0.00 2.90
4750 5648 5.183969 TCTTCTTCTTCTTCCTCATGCATG 58.816 41.667 21.07 21.07 0.00 4.06
4761 5659 3.442625 TCCTCATGCATGCTTTCTTTCTG 59.557 43.478 22.25 0.00 0.00 3.02
4762 5660 3.179830 CTCATGCATGCTTTCTTTCTGC 58.820 45.455 22.25 0.00 0.00 4.26
4798 5699 9.632807 CTCTTAATTAGCCTCTGTATGTATGTC 57.367 37.037 0.00 0.00 0.00 3.06
4825 5726 6.672593 ACTATCTAGCAATTGGATTGGGAAA 58.327 36.000 7.72 0.00 40.57 3.13
4864 5765 2.632028 TCACAACATGATTGGGTTTGGG 59.368 45.455 0.00 0.00 29.99 4.12
4937 5845 4.023792 ACAGACATGTGTAATGTGTTGCTG 60.024 41.667 1.15 1.92 38.57 4.41
4966 5874 5.390356 CGCCACTTCTCTCTGATTTCTTTTC 60.390 44.000 0.00 0.00 0.00 2.29
4987 5895 5.116069 TCAAAAACTTTTGCGGATAGTCC 57.884 39.130 9.58 0.00 45.35 3.85
5009 5917 3.324846 CAGGTAGCACATAGGGCAGATTA 59.675 47.826 0.00 0.00 0.00 1.75
5010 5918 3.973973 AGGTAGCACATAGGGCAGATTAA 59.026 43.478 0.00 0.00 0.00 1.40
5011 5919 4.412199 AGGTAGCACATAGGGCAGATTAAA 59.588 41.667 0.00 0.00 0.00 1.52
5012 5920 5.104109 AGGTAGCACATAGGGCAGATTAAAA 60.104 40.000 0.00 0.00 0.00 1.52
5014 5922 6.940298 GGTAGCACATAGGGCAGATTAAAATA 59.060 38.462 0.00 0.00 0.00 1.40
5369 6290 3.631250 AGGAAGCAAGAGGAACAACAAA 58.369 40.909 0.00 0.00 0.00 2.83
5372 6293 4.805719 GGAAGCAAGAGGAACAACAAAAAG 59.194 41.667 0.00 0.00 0.00 2.27
5376 6297 6.463360 AGCAAGAGGAACAACAAAAAGAAAA 58.537 32.000 0.00 0.00 0.00 2.29
5377 6298 6.934083 AGCAAGAGGAACAACAAAAAGAAAAA 59.066 30.769 0.00 0.00 0.00 1.94
5476 6397 9.979578 AATAGAAGAAGAATGATACTAGCAGTG 57.020 33.333 0.00 0.00 0.00 3.66
5489 6410 5.886960 ACTAGCAGTGAAAAGGCAAATAG 57.113 39.130 0.00 0.00 0.00 1.73
5521 6442 7.051623 AGCCTAAACCGACATGTAAAATATCA 58.948 34.615 0.00 0.00 0.00 2.15
5565 6486 2.406616 CCTGGCCCGTTTTGGATCG 61.407 63.158 0.00 0.00 42.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.990386 CGTGTCCTAGACTGAGTTAGCTATA 59.010 44.000 0.00 0.00 33.15 1.31
57 58 4.190001 CGTGTCCTAGACTGAGTTAGCTA 58.810 47.826 0.00 0.00 33.15 3.32
58 59 3.011119 CGTGTCCTAGACTGAGTTAGCT 58.989 50.000 0.00 0.00 33.15 3.32
59 60 2.097791 CCGTGTCCTAGACTGAGTTAGC 59.902 54.545 0.00 0.00 33.15 3.09
60 61 3.345414 ACCGTGTCCTAGACTGAGTTAG 58.655 50.000 0.00 0.00 33.15 2.34
61 62 3.430042 ACCGTGTCCTAGACTGAGTTA 57.570 47.619 0.00 0.00 33.15 2.24
62 63 2.289592 ACCGTGTCCTAGACTGAGTT 57.710 50.000 0.00 0.00 33.15 3.01
63 64 2.039480 TGTACCGTGTCCTAGACTGAGT 59.961 50.000 0.00 0.00 33.15 3.41
64 65 2.708051 TGTACCGTGTCCTAGACTGAG 58.292 52.381 0.00 0.00 33.15 3.35
65 66 2.865119 TGTACCGTGTCCTAGACTGA 57.135 50.000 0.00 0.00 33.15 3.41
66 67 2.031807 CGATGTACCGTGTCCTAGACTG 59.968 54.545 0.00 0.00 33.15 3.51
67 68 2.286872 CGATGTACCGTGTCCTAGACT 58.713 52.381 0.00 0.00 33.15 3.24
68 69 1.332997 CCGATGTACCGTGTCCTAGAC 59.667 57.143 0.00 0.00 0.00 2.59
79 80 1.033746 TGTCCTCGGTCCGATGTACC 61.034 60.000 15.81 5.69 34.61 3.34
91 92 2.933495 TCTACCGATTTGTGTCCTCG 57.067 50.000 0.00 0.00 0.00 4.63
105 106 6.238593 CCAGTACAGTCTTACGGTTATCTACC 60.239 46.154 0.00 0.00 44.03 3.18
163 175 2.014010 ATGCAATTTGTGTGTCCCCT 57.986 45.000 0.00 0.00 0.00 4.79
178 190 0.971959 CTTTGCTTGGGGCCTATGCA 60.972 55.000 23.65 23.65 40.92 3.96
187 199 1.089920 CGGAGTCATCTTTGCTTGGG 58.910 55.000 0.00 0.00 0.00 4.12
252 264 1.202758 AGTTTCTGTTCCGCCACATCA 60.203 47.619 0.00 0.00 0.00 3.07
258 270 1.576421 CAGCAGTTTCTGTTCCGCC 59.424 57.895 0.00 0.00 33.43 6.13
278 290 1.614525 TCTGAGAGCCACCCATGCT 60.615 57.895 0.00 0.00 43.03 3.79
390 424 0.607489 AGCATGTGACACAAGAGGGC 60.607 55.000 13.23 11.16 0.00 5.19
426 460 2.256591 GCAGTGGTGAGCAGTGTGG 61.257 63.158 19.28 0.00 0.00 4.17
477 511 1.062206 GACGGATCGGTCGACAGAC 59.938 63.158 20.70 13.71 46.34 3.51
480 514 3.136123 GGGACGGATCGGTCGACA 61.136 66.667 22.61 0.00 37.82 4.35
486 520 0.756903 ATTTACTGGGGACGGATCGG 59.243 55.000 0.00 0.00 41.09 4.18
488 522 3.553828 TTGATTTACTGGGGACGGATC 57.446 47.619 0.00 0.00 41.09 3.36
493 534 2.952310 GGCAGATTGATTTACTGGGGAC 59.048 50.000 0.00 0.00 33.00 4.46
514 569 7.736447 ACTACCTTTTCAGTTTTGATCTGAG 57.264 36.000 0.00 0.00 41.87 3.35
515 570 9.273016 CTTACTACCTTTTCAGTTTTGATCTGA 57.727 33.333 0.00 0.00 39.71 3.27
537 592 5.625311 CGGTGAAATGCTTGTTCTTTCTTAC 59.375 40.000 0.00 0.00 31.66 2.34
538 593 5.529430 TCGGTGAAATGCTTGTTCTTTCTTA 59.471 36.000 0.00 0.00 31.66 2.10
544 599 3.411446 TCATCGGTGAAATGCTTGTTCT 58.589 40.909 0.00 0.00 0.00 3.01
545 600 3.829886 TCATCGGTGAAATGCTTGTTC 57.170 42.857 0.00 0.00 0.00 3.18
546 601 3.609175 CGTTCATCGGTGAAATGCTTGTT 60.609 43.478 13.77 0.00 45.38 2.83
547 602 2.095768 CGTTCATCGGTGAAATGCTTGT 60.096 45.455 13.77 0.00 45.38 3.16
548 603 2.508867 CGTTCATCGGTGAAATGCTTG 58.491 47.619 13.77 0.00 45.38 4.01
550 605 0.447801 GCGTTCATCGGTGAAATGCT 59.552 50.000 22.80 0.00 45.38 3.79
560 615 0.246912 GCAGAAAGACGCGTTCATCG 60.247 55.000 15.53 9.36 43.12 3.84
569 624 1.667724 GTGATCCATGGCAGAAAGACG 59.332 52.381 6.96 0.00 0.00 4.18
570 625 2.715046 TGTGATCCATGGCAGAAAGAC 58.285 47.619 6.96 0.00 0.00 3.01
603 666 9.151471 GCTATCATTGAGGCGATAAAATTACTA 57.849 33.333 0.00 0.00 0.00 1.82
604 667 7.119846 GGCTATCATTGAGGCGATAAAATTACT 59.880 37.037 7.86 0.00 0.00 2.24
605 668 7.244192 GGCTATCATTGAGGCGATAAAATTAC 58.756 38.462 7.86 0.00 0.00 1.89
676 739 0.100861 GGTGAGAGTGGCGTAGTAGC 59.899 60.000 0.00 0.00 0.00 3.58
677 740 1.132643 GTGGTGAGAGTGGCGTAGTAG 59.867 57.143 0.00 0.00 0.00 2.57
678 741 1.171308 GTGGTGAGAGTGGCGTAGTA 58.829 55.000 0.00 0.00 0.00 1.82
679 742 0.826256 TGTGGTGAGAGTGGCGTAGT 60.826 55.000 0.00 0.00 0.00 2.73
680 743 0.532573 ATGTGGTGAGAGTGGCGTAG 59.467 55.000 0.00 0.00 0.00 3.51
681 744 0.246360 CATGTGGTGAGAGTGGCGTA 59.754 55.000 0.00 0.00 0.00 4.42
687 750 0.546267 AGGAGCCATGTGGTGAGAGT 60.546 55.000 0.35 0.00 37.57 3.24
733 805 1.967494 GGTTTTGTAGGCGGGCGAA 60.967 57.895 0.00 0.00 0.00 4.70
734 806 2.358984 GGTTTTGTAGGCGGGCGA 60.359 61.111 0.00 0.00 0.00 5.54
808 880 5.023533 TGCCGATGCTATCTTCTTAACTT 57.976 39.130 0.00 0.00 38.71 2.66
809 881 4.672587 TGCCGATGCTATCTTCTTAACT 57.327 40.909 0.00 0.00 38.71 2.24
810 882 4.390297 GGATGCCGATGCTATCTTCTTAAC 59.610 45.833 0.00 0.00 38.71 2.01
811 883 4.563580 GGGATGCCGATGCTATCTTCTTAA 60.564 45.833 0.00 0.00 38.71 1.85
812 884 3.055819 GGGATGCCGATGCTATCTTCTTA 60.056 47.826 0.00 0.00 38.71 2.10
813 885 2.289945 GGGATGCCGATGCTATCTTCTT 60.290 50.000 0.00 0.00 38.71 2.52
814 886 1.277557 GGGATGCCGATGCTATCTTCT 59.722 52.381 0.00 0.00 38.71 2.85
828 900 2.622436 GCTATCTAATCCGTGGGATGC 58.378 52.381 0.00 0.00 42.27 3.91
837 909 0.389948 CCGGTGGCGCTATCTAATCC 60.390 60.000 7.64 0.00 0.00 3.01
877 949 3.701542 CTGGAGGCCGCAAGAGATATATA 59.298 47.826 4.55 0.00 43.02 0.86
878 950 2.499289 CTGGAGGCCGCAAGAGATATAT 59.501 50.000 4.55 0.00 43.02 0.86
879 951 1.895798 CTGGAGGCCGCAAGAGATATA 59.104 52.381 4.55 0.00 43.02 0.86
880 952 0.683973 CTGGAGGCCGCAAGAGATAT 59.316 55.000 4.55 0.00 43.02 1.63
1045 1119 2.431683 CACCACCAGGGACACCAG 59.568 66.667 0.00 0.00 41.15 4.00
1047 1121 3.175710 ACCACCACCAGGGACACC 61.176 66.667 0.00 0.00 41.15 4.16
1051 1125 3.174987 CACCACCACCACCAGGGA 61.175 66.667 0.00 0.00 41.15 4.20
1053 1127 4.974721 GCCACCACCACCACCAGG 62.975 72.222 0.00 0.00 42.21 4.45
1243 1317 2.726760 CGAATTGCGATGGAGTAGTAGC 59.273 50.000 0.00 0.00 44.57 3.58
1265 1339 1.736365 GCTAGCGGAGGTGGAGGTAC 61.736 65.000 0.00 0.00 39.40 3.34
1274 1348 1.287503 GAATCGGAGCTAGCGGAGG 59.712 63.158 9.55 0.26 0.00 4.30
1276 1350 2.201022 GGGAATCGGAGCTAGCGGA 61.201 63.158 9.55 8.81 0.00 5.54
1278 1352 0.319125 GAAGGGAATCGGAGCTAGCG 60.319 60.000 9.55 0.00 0.00 4.26
1299 1381 1.980765 ACTGAGCTCTTGTCCATGGAA 59.019 47.619 18.20 0.00 0.00 3.53
1301 1383 2.027377 AGAACTGAGCTCTTGTCCATGG 60.027 50.000 16.19 4.97 0.00 3.66
1302 1384 3.055963 AGAGAACTGAGCTCTTGTCCATG 60.056 47.826 16.19 0.00 39.62 3.66
1304 1386 2.603021 AGAGAACTGAGCTCTTGTCCA 58.397 47.619 16.19 0.00 39.62 4.02
1317 1399 0.947244 CGCCAAGCAACAAGAGAACT 59.053 50.000 0.00 0.00 0.00 3.01
1326 1408 2.877691 GATCCCACGCCAAGCAAC 59.122 61.111 0.00 0.00 0.00 4.17
1339 1421 1.143277 TCCTACCTCTGACCTCGATCC 59.857 57.143 0.00 0.00 0.00 3.36
1361 1450 6.597672 CCGCATCTCTACTTGTCTATCTATCT 59.402 42.308 0.00 0.00 0.00 1.98
1362 1451 6.373216 ACCGCATCTCTACTTGTCTATCTATC 59.627 42.308 0.00 0.00 0.00 2.08
1363 1452 6.150307 CACCGCATCTCTACTTGTCTATCTAT 59.850 42.308 0.00 0.00 0.00 1.98
1372 1461 2.164422 TCACTCACCGCATCTCTACTTG 59.836 50.000 0.00 0.00 0.00 3.16
1402 1511 2.738139 CCACGCTGACATCACGCA 60.738 61.111 4.49 0.00 0.00 5.24
1438 1547 4.100084 CGGGCTCCTCCACATGCA 62.100 66.667 0.00 0.00 36.21 3.96
1492 1601 0.476771 AAAGGGGAAGAAACTGCCGA 59.523 50.000 0.00 0.00 27.15 5.54
1507 1616 3.938963 TGCTCCTCGCTGTAAATAAAAGG 59.061 43.478 0.00 0.00 40.11 3.11
1545 1654 0.389556 CAGCTCCCGATCGATCCATG 60.390 60.000 18.66 8.30 0.00 3.66
1546 1655 0.540597 TCAGCTCCCGATCGATCCAT 60.541 55.000 18.66 0.00 0.00 3.41
1547 1656 0.755327 TTCAGCTCCCGATCGATCCA 60.755 55.000 18.66 3.20 0.00 3.41
1548 1657 0.605589 ATTCAGCTCCCGATCGATCC 59.394 55.000 18.66 5.21 0.00 3.36
1550 1659 0.319728 CCATTCAGCTCCCGATCGAT 59.680 55.000 18.66 0.00 0.00 3.59
1551 1660 1.043116 ACCATTCAGCTCCCGATCGA 61.043 55.000 18.66 0.00 0.00 3.59
1552 1661 0.877649 CACCATTCAGCTCCCGATCG 60.878 60.000 8.51 8.51 0.00 3.69
1554 1663 0.179000 GTCACCATTCAGCTCCCGAT 59.821 55.000 0.00 0.00 0.00 4.18
1555 1664 1.191489 TGTCACCATTCAGCTCCCGA 61.191 55.000 0.00 0.00 0.00 5.14
1558 1667 1.277557 AGACTGTCACCATTCAGCTCC 59.722 52.381 10.88 0.00 35.37 4.70
1559 1668 2.028658 TCAGACTGTCACCATTCAGCTC 60.029 50.000 10.88 0.00 35.37 4.09
1560 1669 1.973515 TCAGACTGTCACCATTCAGCT 59.026 47.619 10.88 0.00 35.37 4.24
1561 1670 2.072298 GTCAGACTGTCACCATTCAGC 58.928 52.381 10.88 0.00 35.37 4.26
1562 1671 3.324117 CTGTCAGACTGTCACCATTCAG 58.676 50.000 10.88 5.96 37.65 3.02
1563 1672 2.037641 CCTGTCAGACTGTCACCATTCA 59.962 50.000 10.88 0.26 0.00 2.57
1681 1804 3.656045 CCAACCCAACGCGTCACC 61.656 66.667 14.44 0.00 0.00 4.02
1746 1869 7.952930 AGTAGGAGTTGGTGATCTATATGATGT 59.047 37.037 0.00 0.00 35.14 3.06
1748 1871 7.338196 CGAGTAGGAGTTGGTGATCTATATGAT 59.662 40.741 0.00 0.00 38.27 2.45
1749 1872 6.655425 CGAGTAGGAGTTGGTGATCTATATGA 59.345 42.308 0.00 0.00 0.00 2.15
1750 1873 6.655425 TCGAGTAGGAGTTGGTGATCTATATG 59.345 42.308 0.00 0.00 0.00 1.78
1751 1874 6.780901 TCGAGTAGGAGTTGGTGATCTATAT 58.219 40.000 0.00 0.00 0.00 0.86
1752 1875 6.183810 TCGAGTAGGAGTTGGTGATCTATA 57.816 41.667 0.00 0.00 0.00 1.31
1753 1876 5.050126 TCGAGTAGGAGTTGGTGATCTAT 57.950 43.478 0.00 0.00 0.00 1.98
1754 1877 4.498894 TCGAGTAGGAGTTGGTGATCTA 57.501 45.455 0.00 0.00 0.00 1.98
1756 1879 3.304123 CGATCGAGTAGGAGTTGGTGATC 60.304 52.174 10.26 0.00 0.00 2.92
1782 1905 4.925576 ACGTCGGCCGCGATGATC 62.926 66.667 36.24 14.80 41.42 2.92
1786 1909 4.508128 AATCACGTCGGCCGCGAT 62.508 61.111 36.24 24.53 39.90 4.58
1789 1912 2.890474 ATGAATCACGTCGGCCGC 60.890 61.111 23.51 15.21 41.42 6.53
1794 1917 9.469239 CATCAATTATTATCATGAATCACGTCG 57.531 33.333 0.00 0.00 0.00 5.12
1804 1927 9.838163 CGCAAACAAACATCAATTATTATCATG 57.162 29.630 0.00 0.00 0.00 3.07
1805 1928 9.033481 CCGCAAACAAACATCAATTATTATCAT 57.967 29.630 0.00 0.00 0.00 2.45
1806 1929 8.031864 ACCGCAAACAAACATCAATTATTATCA 58.968 29.630 0.00 0.00 0.00 2.15
1807 1930 8.320295 CACCGCAAACAAACATCAATTATTATC 58.680 33.333 0.00 0.00 0.00 1.75
1829 1952 4.901123 TGCACCGACACCACACCG 62.901 66.667 0.00 0.00 0.00 4.94
1834 1957 2.039974 GCATCATGCACCGACACCA 61.040 57.895 4.20 0.00 44.26 4.17
1920 2043 4.436998 CCGCGGAGGCTCGAGTTT 62.437 66.667 24.07 2.05 36.88 2.66
1932 2055 4.143333 ATCACCTCGAACCCGCGG 62.143 66.667 21.04 21.04 45.54 6.46
2059 2223 5.415221 GTGACCTCTAGTGAATGGAAGAAG 58.585 45.833 0.00 0.00 0.00 2.85
2061 2225 3.769844 GGTGACCTCTAGTGAATGGAAGA 59.230 47.826 0.00 0.00 0.00 2.87
2065 2229 1.825474 ACGGTGACCTCTAGTGAATGG 59.175 52.381 0.00 0.00 0.00 3.16
2067 2231 2.231478 CACACGGTGACCTCTAGTGAAT 59.769 50.000 16.29 0.00 35.23 2.57
2069 2233 1.244816 CACACGGTGACCTCTAGTGA 58.755 55.000 16.29 0.00 35.23 3.41
2071 2235 3.434053 ACACACGGTGACCTCTAGT 57.566 52.632 16.29 0.00 36.96 2.57
2081 2245 1.004320 ACACACACACACACACGGT 60.004 52.632 0.00 0.00 0.00 4.83
2082 2246 1.295357 ACACACACACACACACACGG 61.295 55.000 0.00 0.00 0.00 4.94
2083 2247 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
2084 2248 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2085 2249 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2086 2250 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2087 2251 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2088 2252 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2089 2253 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2090 2254 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2091 2255 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2092 2256 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2093 2257 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2094 2258 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2095 2259 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2096 2260 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2097 2261 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
2098 2262 1.128507 CTGACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
2099 2263 1.437625 CTGACACACACACACACACA 58.562 50.000 0.00 0.00 0.00 3.72
2100 2264 0.726827 CCTGACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
2101 2265 0.610687 TCCTGACACACACACACACA 59.389 50.000 0.00 0.00 0.00 3.72
2102 2266 1.290203 CTCCTGACACACACACACAC 58.710 55.000 0.00 0.00 0.00 3.82
2132 2296 1.805945 GCGATCTGCCGAACGAACT 60.806 57.895 11.80 0.00 37.60 3.01
2133 2297 2.695646 GCGATCTGCCGAACGAAC 59.304 61.111 11.80 0.00 37.60 3.95
2240 2404 1.370535 CGATCGATCGTGGCATCGT 60.371 57.895 33.95 0.00 44.99 3.73
2318 2506 1.674651 GGTCGGTTCCTTTCAGGCC 60.675 63.158 0.00 0.00 34.61 5.19
2319 2507 2.033194 CGGTCGGTTCCTTTCAGGC 61.033 63.158 0.00 0.00 34.61 4.85
2347 2535 1.004862 GGGTGGAAAGGAAAGGAGAGG 59.995 57.143 0.00 0.00 0.00 3.69
2381 2569 4.211920 GACTAGGAGAGGATTACTGCTGT 58.788 47.826 0.66 0.66 36.75 4.40
2383 2571 3.465588 AGGACTAGGAGAGGATTACTGCT 59.534 47.826 0.00 0.00 39.26 4.24
2384 2572 3.839778 AGGACTAGGAGAGGATTACTGC 58.160 50.000 0.00 0.00 0.00 4.40
2392 2580 7.124750 GGAGTAGTAGTATAGGACTAGGAGAGG 59.875 48.148 0.00 0.00 41.47 3.69
2393 2581 7.897565 AGGAGTAGTAGTATAGGACTAGGAGAG 59.102 44.444 0.00 0.00 41.47 3.20
2394 2582 7.778781 AGGAGTAGTAGTATAGGACTAGGAGA 58.221 42.308 0.00 0.00 41.47 3.71
2395 2583 8.971073 GTAGGAGTAGTAGTATAGGACTAGGAG 58.029 44.444 0.00 0.00 41.47 3.69
2416 2613 2.345991 GTTGGCAGGCACGTAGGA 59.654 61.111 0.00 0.00 0.00 2.94
2417 2614 2.746277 GGTTGGCAGGCACGTAGG 60.746 66.667 0.00 0.00 0.00 3.18
2440 2637 2.507102 CGAGCTCGGCATCGTTGT 60.507 61.111 28.40 0.00 37.69 3.32
2446 2643 1.812922 CAAGAAGCGAGCTCGGCAT 60.813 57.895 35.10 20.90 40.23 4.40
2447 2644 2.433145 CAAGAAGCGAGCTCGGCA 60.433 61.111 35.10 0.00 40.23 5.69
2448 2645 3.858989 GCAAGAAGCGAGCTCGGC 61.859 66.667 35.10 26.28 40.23 5.54
2457 2654 3.423154 CCACGTCCGGCAAGAAGC 61.423 66.667 0.00 0.00 44.65 3.86
2477 2946 3.616721 ACGCGAACAGCCTGGTCT 61.617 61.111 15.93 0.00 44.76 3.85
2512 3003 4.145365 TCTTTCTCCTGAAAACGGAACA 57.855 40.909 0.00 0.00 41.09 3.18
2599 3095 9.889128 CTTCTACTTCTACTACTACTACCAGTT 57.111 37.037 0.00 0.00 0.00 3.16
2600 3096 9.265862 TCTTCTACTTCTACTACTACTACCAGT 57.734 37.037 0.00 0.00 0.00 4.00
2603 3099 9.492973 CCATCTTCTACTTCTACTACTACTACC 57.507 40.741 0.00 0.00 0.00 3.18
2605 3101 9.223291 ACCCATCTTCTACTTCTACTACTACTA 57.777 37.037 0.00 0.00 0.00 1.82
2606 3102 7.994334 CACCCATCTTCTACTTCTACTACTACT 59.006 40.741 0.00 0.00 0.00 2.57
2617 3348 0.460284 CGCGCACCCATCTTCTACTT 60.460 55.000 8.75 0.00 0.00 2.24
2642 3373 1.572085 CGGGAATGATCGGCATCTGC 61.572 60.000 0.00 0.00 35.78 4.26
2647 3378 1.971505 AAGCTCGGGAATGATCGGCA 61.972 55.000 0.00 0.00 0.00 5.69
2688 3423 1.663074 GGATGCAGTCCGCGATCTC 60.663 63.158 8.23 0.87 46.97 2.75
2708 3443 1.134670 GGTATCTGAACTTCCTGCGCT 60.135 52.381 9.73 0.00 0.00 5.92
2723 3470 0.946221 CGGCAGATCGCTTGGGTATC 60.946 60.000 8.94 0.00 41.91 2.24
2760 3507 4.871822 AGAAGTAATTAAGGGCCTGCAAT 58.128 39.130 6.92 7.37 0.00 3.56
2761 3508 4.316025 AGAAGTAATTAAGGGCCTGCAA 57.684 40.909 6.92 4.82 0.00 4.08
2762 3509 4.263727 TGAAGAAGTAATTAAGGGCCTGCA 60.264 41.667 6.92 0.00 0.00 4.41
2763 3510 4.270008 TGAAGAAGTAATTAAGGGCCTGC 58.730 43.478 6.92 0.00 0.00 4.85
2764 3511 5.501156 ACTGAAGAAGTAATTAAGGGCCTG 58.499 41.667 6.92 0.00 37.36 4.85
2765 3512 5.780958 ACTGAAGAAGTAATTAAGGGCCT 57.219 39.130 0.00 0.00 37.36 5.19
2766 3513 7.110810 ACTAACTGAAGAAGTAATTAAGGGCC 58.889 38.462 0.00 0.00 38.56 5.80
2767 3514 8.563123 AACTAACTGAAGAAGTAATTAAGGGC 57.437 34.615 0.00 0.00 38.56 5.19
2793 3540 1.855213 TACCGTTGTCTGCGCGTAGT 61.855 55.000 23.58 6.17 0.00 2.73
2820 3567 1.177256 CCGATACCCCTACCGACCAG 61.177 65.000 0.00 0.00 0.00 4.00
2825 3572 1.242076 CAGTACCGATACCCCTACCG 58.758 60.000 0.00 0.00 30.88 4.02
2829 3576 0.759436 CCAGCAGTACCGATACCCCT 60.759 60.000 0.00 0.00 30.88 4.79
2830 3577 1.047034 ACCAGCAGTACCGATACCCC 61.047 60.000 0.00 0.00 30.88 4.95
2831 3578 1.612463 CTACCAGCAGTACCGATACCC 59.388 57.143 0.00 0.00 30.88 3.69
2832 3579 1.612463 CCTACCAGCAGTACCGATACC 59.388 57.143 0.00 0.00 30.88 2.73
2833 3580 2.553172 CTCCTACCAGCAGTACCGATAC 59.447 54.545 0.00 0.00 0.00 2.24
2834 3581 2.860009 CTCCTACCAGCAGTACCGATA 58.140 52.381 0.00 0.00 0.00 2.92
2836 3583 1.035932 GCTCCTACCAGCAGTACCGA 61.036 60.000 0.00 0.00 39.43 4.69
2837 3584 1.320344 TGCTCCTACCAGCAGTACCG 61.320 60.000 0.00 0.00 44.73 4.02
2838 3585 2.591915 TGCTCCTACCAGCAGTACC 58.408 57.895 0.00 0.00 44.73 3.34
2865 3617 1.893137 TCCTGCCACTACAGTACAGTG 59.107 52.381 0.42 3.12 42.52 3.66
2866 3618 2.171840 CTCCTGCCACTACAGTACAGT 58.828 52.381 0.00 0.00 35.83 3.55
2867 3619 2.171840 ACTCCTGCCACTACAGTACAG 58.828 52.381 0.00 5.13 35.83 2.74
2868 3620 2.304221 ACTCCTGCCACTACAGTACA 57.696 50.000 0.00 0.00 35.83 2.90
2869 3621 5.109903 CAAATACTCCTGCCACTACAGTAC 58.890 45.833 0.00 0.00 35.83 2.73
2870 3622 4.775780 ACAAATACTCCTGCCACTACAGTA 59.224 41.667 0.00 0.00 35.83 2.74
2871 3623 3.583086 ACAAATACTCCTGCCACTACAGT 59.417 43.478 0.00 0.00 35.83 3.55
2872 3624 4.207891 ACAAATACTCCTGCCACTACAG 57.792 45.455 0.00 0.00 37.42 2.74
2873 3625 5.020795 TCTACAAATACTCCTGCCACTACA 58.979 41.667 0.00 0.00 0.00 2.74
2874 3626 5.593679 TCTACAAATACTCCTGCCACTAC 57.406 43.478 0.00 0.00 0.00 2.73
2875 3627 6.808321 AATCTACAAATACTCCTGCCACTA 57.192 37.500 0.00 0.00 0.00 2.74
2876 3628 5.700402 AATCTACAAATACTCCTGCCACT 57.300 39.130 0.00 0.00 0.00 4.00
2877 3629 6.374333 TGAAAATCTACAAATACTCCTGCCAC 59.626 38.462 0.00 0.00 0.00 5.01
2881 3633 7.678218 GCAGCTGAAAATCTACAAATACTCCTG 60.678 40.741 20.43 0.00 0.00 3.86
2882 3634 6.317391 GCAGCTGAAAATCTACAAATACTCCT 59.683 38.462 20.43 0.00 0.00 3.69
2907 3659 5.106555 CCCACAACACATTAACTGCTCTAAG 60.107 44.000 0.00 0.00 0.00 2.18
2910 3662 3.149196 CCCACAACACATTAACTGCTCT 58.851 45.455 0.00 0.00 0.00 4.09
2925 3677 4.629523 GCCCCGAACGACCCACAA 62.630 66.667 0.00 0.00 0.00 3.33
2933 3685 0.594602 TATCGTATCAGCCCCGAACG 59.405 55.000 0.00 0.00 33.89 3.95
2942 3694 2.041966 GCAACGGTCGTATCGTATCAG 58.958 52.381 0.00 0.00 40.18 2.90
2943 3695 1.401199 TGCAACGGTCGTATCGTATCA 59.599 47.619 0.00 0.00 40.18 2.15
2944 3696 2.041966 CTGCAACGGTCGTATCGTATC 58.958 52.381 0.00 0.00 40.18 2.24
2945 3697 1.862815 GCTGCAACGGTCGTATCGTAT 60.863 52.381 0.00 0.00 40.18 3.06
2947 3699 1.804326 GCTGCAACGGTCGTATCGT 60.804 57.895 0.00 0.00 43.14 3.73
2948 3700 1.145759 ATGCTGCAACGGTCGTATCG 61.146 55.000 6.36 0.00 0.00 2.92
2949 3701 1.006832 AATGCTGCAACGGTCGTATC 58.993 50.000 6.36 0.00 0.00 2.24
2972 3745 1.802960 CAGTGAAAGAGCAGCACGAAT 59.197 47.619 0.00 0.00 37.60 3.34
2975 3748 0.510359 GTCAGTGAAAGAGCAGCACG 59.490 55.000 0.00 0.00 37.60 5.34
2979 3752 1.979469 CGTACGTCAGTGAAAGAGCAG 59.021 52.381 7.22 0.00 0.00 4.24
2981 3754 1.337821 CCGTACGTCAGTGAAAGAGC 58.662 55.000 15.21 0.00 0.00 4.09
2993 3766 2.042404 TTGAAACAGGCCCCGTACGT 62.042 55.000 15.21 0.00 0.00 3.57
2994 3767 1.296056 CTTGAAACAGGCCCCGTACG 61.296 60.000 8.69 8.69 0.00 3.67
2997 3770 1.228154 GACTTGAAACAGGCCCCGT 60.228 57.895 0.00 0.00 0.00 5.28
2999 3772 0.536460 TTCGACTTGAAACAGGCCCC 60.536 55.000 0.00 0.00 32.37 5.80
3001 3774 2.416893 GAGATTCGACTTGAAACAGGCC 59.583 50.000 0.00 0.00 40.71 5.19
3002 3775 3.067106 TGAGATTCGACTTGAAACAGGC 58.933 45.455 0.00 0.00 40.71 4.85
3003 3776 4.752101 AGTTGAGATTCGACTTGAAACAGG 59.248 41.667 0.00 0.00 37.87 4.00
3004 3777 5.694006 AGAGTTGAGATTCGACTTGAAACAG 59.306 40.000 0.78 0.00 41.04 3.16
3028 3801 4.649218 TGAAGGATATCTTGTCCGTGATGA 59.351 41.667 2.05 0.00 40.76 2.92
3029 3802 4.747108 GTGAAGGATATCTTGTCCGTGATG 59.253 45.833 2.05 0.00 40.76 3.07
3030 3803 4.499865 CGTGAAGGATATCTTGTCCGTGAT 60.500 45.833 2.05 0.00 40.76 3.06
3031 3804 3.181490 CGTGAAGGATATCTTGTCCGTGA 60.181 47.826 2.05 0.00 40.76 4.35
3032 3805 3.116300 CGTGAAGGATATCTTGTCCGTG 58.884 50.000 2.05 0.00 40.76 4.94
3033 3806 3.021695 TCGTGAAGGATATCTTGTCCGT 58.978 45.455 2.05 0.00 40.76 4.69
3034 3807 3.710326 TCGTGAAGGATATCTTGTCCG 57.290 47.619 2.05 1.04 40.76 4.79
3035 3808 6.737254 TTTTTCGTGAAGGATATCTTGTCC 57.263 37.500 2.05 0.00 35.50 4.02
3058 3831 3.118519 ACCAAGTGTTCAGGACTAACGTT 60.119 43.478 5.88 5.88 0.00 3.99
3059 3832 2.433239 ACCAAGTGTTCAGGACTAACGT 59.567 45.455 0.00 0.00 0.00 3.99
3060 3833 3.107642 ACCAAGTGTTCAGGACTAACG 57.892 47.619 0.00 0.00 0.00 3.18
3067 3849 5.278463 CCACAAATTCTACCAAGTGTTCAGG 60.278 44.000 0.00 0.00 0.00 3.86
3072 3854 2.890945 GGCCACAAATTCTACCAAGTGT 59.109 45.455 0.00 0.00 0.00 3.55
3076 3858 3.571590 AGTTGGCCACAAATTCTACCAA 58.428 40.909 3.88 0.00 38.54 3.67
3083 3865 2.167487 ACAAACGAGTTGGCCACAAATT 59.833 40.909 3.88 0.00 41.97 1.82
3085 3867 1.178276 ACAAACGAGTTGGCCACAAA 58.822 45.000 3.88 0.00 41.97 2.83
3087 3869 1.133407 GAAACAAACGAGTTGGCCACA 59.867 47.619 3.88 0.00 41.97 4.17
3089 3871 0.378962 CGAAACAAACGAGTTGGCCA 59.621 50.000 0.00 0.00 41.97 5.36
3090 3872 0.933047 GCGAAACAAACGAGTTGGCC 60.933 55.000 0.00 0.00 41.97 5.36
3091 3873 1.259544 CGCGAAACAAACGAGTTGGC 61.260 55.000 0.00 7.20 41.97 4.52
3092 3874 0.656205 CCGCGAAACAAACGAGTTGG 60.656 55.000 8.23 0.00 41.97 3.77
3093 3875 0.656205 CCCGCGAAACAAACGAGTTG 60.656 55.000 8.23 0.00 43.43 3.16
3094 3876 1.644913 CCCGCGAAACAAACGAGTT 59.355 52.632 8.23 0.00 0.00 3.01
3095 3877 2.888998 GCCCGCGAAACAAACGAGT 61.889 57.895 8.23 0.00 0.00 4.18
3096 3878 1.286354 TAGCCCGCGAAACAAACGAG 61.286 55.000 8.23 0.00 0.00 4.18
3097 3879 0.879400 TTAGCCCGCGAAACAAACGA 60.879 50.000 8.23 0.00 0.00 3.85
3099 3881 2.122563 TTTTAGCCCGCGAAACAAAC 57.877 45.000 8.23 0.00 0.00 2.93
3100 3882 2.099427 AGTTTTTAGCCCGCGAAACAAA 59.901 40.909 8.23 0.00 35.13 2.83
3102 3884 1.264826 GAGTTTTTAGCCCGCGAAACA 59.735 47.619 8.23 0.00 35.13 2.83
3103 3885 1.400629 GGAGTTTTTAGCCCGCGAAAC 60.401 52.381 8.23 9.36 33.39 2.78
3106 3920 0.035739 AAGGAGTTTTTAGCCCGCGA 59.964 50.000 8.23 0.00 0.00 5.87
3109 3923 1.463444 CGTCAAGGAGTTTTTAGCCCG 59.537 52.381 0.00 0.00 0.00 6.13
3158 3987 1.067669 TCACTGTCACTCACTGTCAGC 59.932 52.381 0.00 0.00 39.04 4.26
3169 3998 3.561310 TCTGAATGCAAGTTCACTGTCAC 59.439 43.478 0.00 0.00 34.58 3.67
3170 3999 3.807553 TCTGAATGCAAGTTCACTGTCA 58.192 40.909 0.00 0.00 34.58 3.58
3171 4000 4.060900 TCTCTGAATGCAAGTTCACTGTC 58.939 43.478 0.00 0.00 34.58 3.51
3172 4001 4.063689 CTCTCTGAATGCAAGTTCACTGT 58.936 43.478 0.00 0.00 34.58 3.55
3173 4002 3.120269 GCTCTCTGAATGCAAGTTCACTG 60.120 47.826 0.00 0.00 34.58 3.66
3174 4003 3.072944 GCTCTCTGAATGCAAGTTCACT 58.927 45.455 0.00 0.00 34.58 3.41
3177 4006 2.419324 CCAGCTCTCTGAATGCAAGTTC 59.581 50.000 0.00 0.00 42.95 3.01
3178 4007 2.039480 TCCAGCTCTCTGAATGCAAGTT 59.961 45.455 0.00 0.00 42.95 2.66
3179 4008 1.627329 TCCAGCTCTCTGAATGCAAGT 59.373 47.619 0.00 0.00 42.95 3.16
3180 4009 2.398252 TCCAGCTCTCTGAATGCAAG 57.602 50.000 0.00 0.00 42.95 4.01
3181 4010 2.816087 GTTTCCAGCTCTCTGAATGCAA 59.184 45.455 0.00 0.00 42.95 4.08
3182 4011 2.224597 TGTTTCCAGCTCTCTGAATGCA 60.225 45.455 0.00 0.00 42.95 3.96
3183 4012 2.419324 CTGTTTCCAGCTCTCTGAATGC 59.581 50.000 0.00 0.00 42.95 3.56
3200 4029 0.534877 TGTTCGCCTGATGTGCTGTT 60.535 50.000 0.00 0.00 0.00 3.16
3210 4039 2.357637 TCTTTTCAAGGTTGTTCGCCTG 59.642 45.455 0.00 0.00 36.30 4.85
3215 4048 6.394809 TGTCCTTTTCTTTTCAAGGTTGTTC 58.605 36.000 0.00 0.00 40.59 3.18
3227 4063 2.817844 GCCGGTACATGTCCTTTTCTTT 59.182 45.455 0.00 0.00 0.00 2.52
3229 4065 1.349688 TGCCGGTACATGTCCTTTTCT 59.650 47.619 0.00 0.00 0.00 2.52
3235 4071 1.521681 GCTCTGCCGGTACATGTCC 60.522 63.158 0.00 2.71 0.00 4.02
3239 4075 1.819229 CTCTGCTCTGCCGGTACAT 59.181 57.895 1.90 0.00 0.00 2.29
3240 4076 3.006756 GCTCTGCTCTGCCGGTACA 62.007 63.158 1.90 0.00 0.00 2.90
3252 4088 4.819761 TCATCACCGGCGCTCTGC 62.820 66.667 7.64 0.00 45.38 4.26
3253 4089 2.887568 GTCATCACCGGCGCTCTG 60.888 66.667 7.64 0.00 0.00 3.35
3254 4090 4.148825 GGTCATCACCGGCGCTCT 62.149 66.667 7.64 0.00 31.06 4.09
3334 4180 3.850173 TCCCCTACATAAATAGCATCCCC 59.150 47.826 0.00 0.00 0.00 4.81
3338 4184 6.275618 ACCAAGATCCCCTACATAAATAGCAT 59.724 38.462 0.00 0.00 0.00 3.79
3347 4193 2.634940 CGATGACCAAGATCCCCTACAT 59.365 50.000 0.00 0.00 0.00 2.29
3348 4194 2.039418 CGATGACCAAGATCCCCTACA 58.961 52.381 0.00 0.00 0.00 2.74
3349 4195 2.297597 CTCGATGACCAAGATCCCCTAC 59.702 54.545 0.00 0.00 0.00 3.18
3350 4196 2.598565 CTCGATGACCAAGATCCCCTA 58.401 52.381 0.00 0.00 0.00 3.53
3468 4325 4.790861 GGGACGACGGCTCGGAAC 62.791 72.222 0.00 0.00 44.80 3.62
3502 4359 4.933064 GAGGACGGCTCGGCATCG 62.933 72.222 2.85 0.00 35.63 3.84
3503 4360 4.593864 GGAGGACGGCTCGGCATC 62.594 72.222 6.56 6.56 45.37 3.91
3507 4364 2.005960 CTAAGTGGAGGACGGCTCGG 62.006 65.000 0.00 0.00 0.00 4.63
3508 4365 1.030488 TCTAAGTGGAGGACGGCTCG 61.030 60.000 0.00 0.00 0.00 5.03
3509 4366 1.067821 CATCTAAGTGGAGGACGGCTC 59.932 57.143 0.00 0.00 0.00 4.70
3510 4367 1.115467 CATCTAAGTGGAGGACGGCT 58.885 55.000 0.00 0.00 0.00 5.52
3511 4368 0.105039 CCATCTAAGTGGAGGACGGC 59.895 60.000 0.00 0.00 42.02 5.68
3512 4369 0.105039 GCCATCTAAGTGGAGGACGG 59.895 60.000 0.00 0.00 42.02 4.79
3513 4370 0.824109 TGCCATCTAAGTGGAGGACG 59.176 55.000 0.00 0.00 42.02 4.79
3514 4371 2.486191 CCATGCCATCTAAGTGGAGGAC 60.486 54.545 0.00 0.00 42.02 3.85
3525 4382 1.530891 GCTCCATGCCATGCCATCT 60.531 57.895 0.00 0.00 35.15 2.90
3634 4496 1.067582 CACGGGCTAAGGACGGATC 59.932 63.158 0.00 0.00 0.00 3.36
3718 4584 2.030562 GTGGCGGCAGTACACTGT 59.969 61.111 13.91 0.00 45.45 3.55
3735 4611 1.003718 GAGACTGTTTGGGGGTCGG 60.004 63.158 0.00 0.00 35.42 4.79
3812 4688 6.202226 TCACGACTCTTAGAAATCATCATCG 58.798 40.000 0.00 0.00 0.00 3.84
3814 4690 8.777865 TTTTCACGACTCTTAGAAATCATCAT 57.222 30.769 0.00 0.00 30.92 2.45
3861 4750 7.169308 CACATCGTCAGTTAATTACCATCCTAC 59.831 40.741 0.00 0.00 0.00 3.18
3862 4751 7.147794 ACACATCGTCAGTTAATTACCATCCTA 60.148 37.037 0.00 0.00 0.00 2.94
3865 4754 6.312918 ACACACATCGTCAGTTAATTACCATC 59.687 38.462 0.00 0.00 0.00 3.51
3867 4756 5.407084 CACACACATCGTCAGTTAATTACCA 59.593 40.000 0.00 0.00 0.00 3.25
3870 4759 7.386573 ACATTCACACACATCGTCAGTTAATTA 59.613 33.333 0.00 0.00 0.00 1.40
3890 4779 0.884259 CCGACCTGCACACACATTCA 60.884 55.000 0.00 0.00 0.00 2.57
4075 4964 0.039256 GGTGGTGACTACGTGCGTAA 60.039 55.000 0.00 0.00 0.00 3.18
4077 4966 2.138656 GAGGTGGTGACTACGTGCGT 62.139 60.000 0.00 2.05 0.00 5.24
4078 4967 1.443872 GAGGTGGTGACTACGTGCG 60.444 63.158 0.00 0.00 0.00 5.34
4079 4968 0.388649 CTGAGGTGGTGACTACGTGC 60.389 60.000 0.00 0.00 0.00 5.34
4080 4969 0.388649 GCTGAGGTGGTGACTACGTG 60.389 60.000 0.00 0.00 0.00 4.49
4098 4987 1.735559 GTCGGTTCAGTACGTGGGC 60.736 63.158 0.00 0.00 0.00 5.36
4101 4990 2.084681 GCCGTCGGTTCAGTACGTG 61.085 63.158 13.94 0.00 34.90 4.49
4102 4991 2.256461 GCCGTCGGTTCAGTACGT 59.744 61.111 13.94 0.00 34.90 3.57
4103 4992 2.505557 GGCCGTCGGTTCAGTACG 60.506 66.667 13.94 0.00 36.42 3.67
4105 4994 3.751246 CGGGCCGTCGGTTCAGTA 61.751 66.667 19.97 0.00 0.00 2.74
4107 4996 4.796231 CTCGGGCCGTCGGTTCAG 62.796 72.222 27.32 10.20 0.00 3.02
4109 4998 4.493747 CTCTCGGGCCGTCGGTTC 62.494 72.222 27.32 5.69 0.00 3.62
4131 5020 6.479006 TCATGTCCATTCAGTCAGAAAATCT 58.521 36.000 0.00 0.00 40.22 2.40
4132 5021 6.748333 TCATGTCCATTCAGTCAGAAAATC 57.252 37.500 0.00 0.00 40.22 2.17
4133 5022 6.718454 AGTTCATGTCCATTCAGTCAGAAAAT 59.282 34.615 0.00 0.00 40.22 1.82
4134 5023 6.064060 AGTTCATGTCCATTCAGTCAGAAAA 58.936 36.000 0.00 0.00 40.22 2.29
4138 5027 4.379186 GCAAGTTCATGTCCATTCAGTCAG 60.379 45.833 0.00 0.00 0.00 3.51
4139 5028 3.503363 GCAAGTTCATGTCCATTCAGTCA 59.497 43.478 0.00 0.00 0.00 3.41
4140 5029 3.755378 AGCAAGTTCATGTCCATTCAGTC 59.245 43.478 0.00 0.00 0.00 3.51
4141 5030 3.755378 GAGCAAGTTCATGTCCATTCAGT 59.245 43.478 0.00 0.00 0.00 3.41
4142 5031 4.008330 AGAGCAAGTTCATGTCCATTCAG 58.992 43.478 0.00 0.00 0.00 3.02
4143 5032 3.754850 CAGAGCAAGTTCATGTCCATTCA 59.245 43.478 0.00 0.00 0.00 2.57
4144 5033 3.427233 GCAGAGCAAGTTCATGTCCATTC 60.427 47.826 0.00 0.00 0.00 2.67
4145 5034 2.490903 GCAGAGCAAGTTCATGTCCATT 59.509 45.455 0.00 0.00 0.00 3.16
4146 5035 2.089980 GCAGAGCAAGTTCATGTCCAT 58.910 47.619 0.00 0.00 0.00 3.41
4147 5036 1.202794 TGCAGAGCAAGTTCATGTCCA 60.203 47.619 0.00 0.00 34.76 4.02
4148 5037 1.467734 CTGCAGAGCAAGTTCATGTCC 59.532 52.381 8.42 0.00 38.41 4.02
4149 5038 1.467734 CCTGCAGAGCAAGTTCATGTC 59.532 52.381 17.39 0.00 38.41 3.06
4150 5039 1.531423 CCTGCAGAGCAAGTTCATGT 58.469 50.000 17.39 0.00 38.41 3.21
4151 5040 0.809385 CCCTGCAGAGCAAGTTCATG 59.191 55.000 17.39 0.00 38.41 3.07
4153 5042 1.073722 CCCCTGCAGAGCAAGTTCA 59.926 57.895 17.39 0.00 38.41 3.18
4185 5074 2.512286 GAGCTGCACTGCGCCATA 60.512 61.111 4.18 0.00 41.33 2.74
4338 5227 2.258726 GGTGTCGAAGGTGTTGGGC 61.259 63.158 0.00 0.00 0.00 5.36
4410 5299 2.125912 CTGTTGTCGGCGAGGAGG 60.126 66.667 11.20 0.00 0.00 4.30
4529 5418 0.540365 CCTGATGGTGCCTTGGTTGT 60.540 55.000 0.00 0.00 0.00 3.32
4634 5523 6.324042 TCTAGCTACTAGTACAGATCGATCG 58.676 44.000 19.33 9.36 35.72 3.69
4658 5556 1.700186 GGTGGGGCTAAGCTAAGCTAT 59.300 52.381 0.00 0.00 42.37 2.97
4688 5586 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4689 5587 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4690 5588 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4691 5589 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4692 5590 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4693 5591 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4694 5592 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4695 5593 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4696 5594 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4697 5595 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4698 5596 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4699 5597 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4700 5598 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4701 5599 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4702 5600 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4703 5601 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4704 5602 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4705 5603 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4706 5604 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4707 5605 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4708 5606 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4709 5607 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4710 5608 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4711 5609 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4712 5610 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4713 5611 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4714 5612 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4715 5613 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
4716 5614 8.150296 AGGAAGAAGAAGAAGAAGAAGAAGAAG 58.850 37.037 0.00 0.00 0.00 2.85
4717 5615 8.028652 AGGAAGAAGAAGAAGAAGAAGAAGAA 57.971 34.615 0.00 0.00 0.00 2.52
4718 5616 7.288852 TGAGGAAGAAGAAGAAGAAGAAGAAGA 59.711 37.037 0.00 0.00 0.00 2.87
4719 5617 7.441017 TGAGGAAGAAGAAGAAGAAGAAGAAG 58.559 38.462 0.00 0.00 0.00 2.85
4720 5618 7.366847 TGAGGAAGAAGAAGAAGAAGAAGAA 57.633 36.000 0.00 0.00 0.00 2.52
4721 5619 6.985653 TGAGGAAGAAGAAGAAGAAGAAGA 57.014 37.500 0.00 0.00 0.00 2.87
4722 5620 6.092533 GCATGAGGAAGAAGAAGAAGAAGAAG 59.907 42.308 0.00 0.00 0.00 2.85
4723 5621 5.936956 GCATGAGGAAGAAGAAGAAGAAGAA 59.063 40.000 0.00 0.00 0.00 2.52
4724 5622 5.012458 TGCATGAGGAAGAAGAAGAAGAAGA 59.988 40.000 0.00 0.00 0.00 2.87
4738 5636 4.082408 CAGAAAGAAAGCATGCATGAGGAA 60.082 41.667 30.64 0.00 0.00 3.36
4741 5639 3.119459 AGCAGAAAGAAAGCATGCATGAG 60.119 43.478 30.64 5.13 39.34 2.90
4743 5641 3.232213 AGCAGAAAGAAAGCATGCATG 57.768 42.857 22.70 22.70 39.34 4.06
4744 5642 3.955650 AAGCAGAAAGAAAGCATGCAT 57.044 38.095 21.98 4.57 39.34 3.96
4745 5643 3.738830 AAAGCAGAAAGAAAGCATGCA 57.261 38.095 21.98 0.00 39.34 3.96
4750 5648 7.366513 AGAGAATACAAAAGCAGAAAGAAAGC 58.633 34.615 0.00 0.00 0.00 3.51
4761 5659 9.114952 AGAGGCTAATTAAGAGAATACAAAAGC 57.885 33.333 0.00 0.00 0.00 3.51
4777 5678 9.148879 AGTAAGACATACATACAGAGGCTAATT 57.851 33.333 0.00 0.00 36.94 1.40
4798 5699 7.453393 TCCCAATCCAATTGCTAGATAGTAAG 58.547 38.462 0.00 0.00 38.92 2.34
4813 5714 7.617329 TGTCATTACATACATTTCCCAATCCAA 59.383 33.333 0.00 0.00 0.00 3.53
4818 5719 8.765488 ATCATGTCATTACATACATTTCCCAA 57.235 30.769 0.00 0.00 44.70 4.12
4825 5726 8.735692 TGTTGTGATCATGTCATTACATACAT 57.264 30.769 0.00 0.00 44.70 2.29
4848 5749 2.110899 TGGTACCCAAACCCAATCATGT 59.889 45.455 10.07 0.00 38.90 3.21
4937 5845 0.527385 CAGAGAGAAGTGGCGCTAGC 60.527 60.000 7.64 4.06 44.18 3.42
4966 5874 4.865776 TGGACTATCCGCAAAAGTTTTTG 58.134 39.130 11.91 11.91 40.17 2.44
4987 5895 1.123077 TCTGCCCTATGTGCTACCTG 58.877 55.000 0.00 0.00 0.00 4.00
5025 5938 0.463654 TGCTGGACACAGTGGTTGAC 60.464 55.000 5.31 0.00 46.62 3.18
5377 6298 5.521735 TCGCACACATATTTTTGCTGTTTTT 59.478 32.000 0.00 0.00 32.56 1.94
5378 6299 5.046529 TCGCACACATATTTTTGCTGTTTT 58.953 33.333 0.00 0.00 32.56 2.43
5380 6301 4.235939 TCGCACACATATTTTTGCTGTT 57.764 36.364 0.00 0.00 32.56 3.16
5381 6302 3.913548 TCGCACACATATTTTTGCTGT 57.086 38.095 0.00 0.00 32.56 4.40
5382 6303 5.573296 TTTTCGCACACATATTTTTGCTG 57.427 34.783 0.00 0.00 32.56 4.41
5476 6397 9.869757 TTAGGCTTTATTTCTATTTGCCTTTTC 57.130 29.630 8.92 0.00 45.81 2.29
5489 6410 6.190954 ACATGTCGGTTTAGGCTTTATTTC 57.809 37.500 0.00 0.00 0.00 2.17
5521 6442 2.702270 AGGCACCAATCCTTCCTTTT 57.298 45.000 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.