Multiple sequence alignment - TraesCS4B01G347600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G347600 chr4B 100.000 3282 0 0 1 3282 641406714 641409995 0.000000e+00 6061.0
1 TraesCS4B01G347600 chr5A 89.074 1684 106 38 836 2462 679721986 679723648 0.000000e+00 2019.0
2 TraesCS4B01G347600 chr5A 93.640 283 9 5 557 837 679721676 679721951 6.550000e-112 414.0
3 TraesCS4B01G347600 chr5A 83.556 450 47 15 10 443 679721223 679721661 2.370000e-106 396.0
4 TraesCS4B01G347600 chr5A 90.310 258 16 2 2853 3110 679723906 679724154 2.440000e-86 329.0
5 TraesCS4B01G347600 chr5A 94.017 117 7 0 3137 3253 679724235 679724351 9.360000e-41 178.0
6 TraesCS4B01G347600 chr5A 81.818 231 10 11 2491 2712 679723646 679723853 7.290000e-37 165.0
7 TraesCS4B01G347600 chr5A 87.500 96 10 2 2719 2813 679723738 679723832 3.460000e-20 110.0
8 TraesCS4B01G347600 chr5A 78.182 110 24 0 1106 1215 535240004 535240113 1.630000e-08 71.3
9 TraesCS4B01G347600 chr4D 90.486 1482 75 24 836 2283 498906361 498907810 0.000000e+00 1895.0
10 TraesCS4B01G347600 chr4D 89.647 425 30 5 2293 2708 498907849 498908268 2.240000e-146 529.0
11 TraesCS4B01G347600 chr4D 86.305 387 34 8 2726 3110 498908168 498908537 1.420000e-108 403.0
12 TraesCS4B01G347600 chr4D 90.272 257 12 5 586 837 498906082 498906330 1.140000e-84 324.0
13 TraesCS4B01G347600 chr4D 97.436 39 1 0 3112 3150 498908565 498908603 2.110000e-07 67.6
14 TraesCS4B01G347600 chr2B 95.798 119 1 1 439 557 667769536 667769422 4.320000e-44 189.0
15 TraesCS4B01G347600 chr2B 80.928 194 26 8 1327 1512 146964250 146964440 3.410000e-30 143.0
16 TraesCS4B01G347600 chr1A 94.915 118 2 1 436 553 71560335 71560448 7.230000e-42 182.0
17 TraesCS4B01G347600 chr1A 94.286 105 2 1 449 553 382619083 382618983 1.220000e-34 158.0
18 TraesCS4B01G347600 chr1A 75.117 213 24 22 1316 1506 60955941 60955736 4.540000e-09 73.1
19 TraesCS4B01G347600 chr1B 95.536 112 1 1 439 550 105535804 105535697 3.370000e-40 176.0
20 TraesCS4B01G347600 chr1B 93.694 111 2 2 436 546 31719139 31719244 9.420000e-36 161.0
21 TraesCS4B01G347600 chr1B 80.420 143 24 4 1073 1213 389980247 389980387 4.480000e-19 106.0
22 TraesCS4B01G347600 chr1B 77.184 206 23 14 1320 1506 100308822 100309022 7.490000e-17 99.0
23 TraesCS4B01G347600 chr7B 80.628 191 32 3 1327 1513 463622799 463622988 3.410000e-30 143.0
24 TraesCS4B01G347600 chr2D 73.767 446 77 30 1077 1512 95515945 95516360 4.420000e-29 139.0
25 TraesCS4B01G347600 chr7D 79.581 191 34 3 1327 1513 446934331 446934520 7.390000e-27 132.0
26 TraesCS4B01G347600 chr7D 78.146 151 23 8 1073 1218 446920029 446919884 1.620000e-13 87.9
27 TraesCS4B01G347600 chr2A 79.487 195 27 11 1327 1512 94108259 94108449 3.440000e-25 126.0
28 TraesCS4B01G347600 chr1D 80.420 143 24 4 1073 1213 288545953 288546093 4.480000e-19 106.0
29 TraesCS4B01G347600 chr7A 78.667 150 24 7 1073 1218 497776172 497776317 3.490000e-15 93.5
30 TraesCS4B01G347600 chr5D 79.091 110 23 0 1106 1215 421661772 421661881 3.510000e-10 76.8
31 TraesCS4B01G347600 chr5B 78.182 110 24 0 1106 1215 508065144 508065253 1.630000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G347600 chr4B 641406714 641409995 3281 False 6061.000000 6061 100.000000 1 3282 1 chr4B.!!$F1 3281
1 TraesCS4B01G347600 chr5A 679721223 679724351 3128 False 515.857143 2019 88.559286 10 3253 7 chr5A.!!$F2 3243
2 TraesCS4B01G347600 chr4D 498906082 498908603 2521 False 643.720000 1895 90.829200 586 3150 5 chr4D.!!$F1 2564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 933 0.101399 CCTAGCACTACACTGCCGAG 59.899 60.0 0.0 0.0 37.96 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2774 2982 0.10741 TGTCCGGTTCAGCAAACACT 60.107 50.0 0.0 0.0 39.81 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.061848 CGCCCATGGAGCCGTTTT 61.062 61.111 15.22 0.00 0.00 2.43
57 58 1.303309 TTTTTGCCCCAAAACATGCG 58.697 45.000 2.87 0.00 42.02 4.73
75 76 6.605849 ACATGCGCTGACATTATTGATTATC 58.394 36.000 9.73 0.00 0.00 1.75
76 77 6.205270 ACATGCGCTGACATTATTGATTATCA 59.795 34.615 9.73 0.00 0.00 2.15
77 78 6.806388 TGCGCTGACATTATTGATTATCAT 57.194 33.333 9.73 0.00 0.00 2.45
85 86 7.119699 TGACATTATTGATTATCATTCCCTCGC 59.880 37.037 0.00 0.00 0.00 5.03
138 148 1.202818 ACCTCAGTCTTCAAGGCAACC 60.203 52.381 0.00 0.00 33.21 3.77
208 219 0.885150 TTCGCCACCGTACAATGCAA 60.885 50.000 0.00 0.00 35.54 4.08
209 220 1.154301 CGCCACCGTACAATGCAAC 60.154 57.895 0.00 0.00 0.00 4.17
212 223 1.591504 CCACCGTACAATGCAACCCC 61.592 60.000 0.00 0.00 0.00 4.95
213 224 0.891449 CACCGTACAATGCAACCCCA 60.891 55.000 0.00 0.00 0.00 4.96
216 227 0.521291 CGTACAATGCAACCCCACTG 59.479 55.000 0.00 0.00 0.00 3.66
218 229 2.785562 GTACAATGCAACCCCACTGTA 58.214 47.619 0.00 0.00 0.00 2.74
230 241 1.824852 CCCACTGTAATTTGGAAGCCC 59.175 52.381 0.00 0.00 34.46 5.19
234 245 4.895297 CCACTGTAATTTGGAAGCCCATAT 59.105 41.667 0.00 0.00 43.12 1.78
235 246 6.068010 CCACTGTAATTTGGAAGCCCATATA 58.932 40.000 0.00 0.00 43.12 0.86
236 247 6.549364 CCACTGTAATTTGGAAGCCCATATAA 59.451 38.462 0.00 0.00 43.12 0.98
237 248 7.069331 CCACTGTAATTTGGAAGCCCATATAAA 59.931 37.037 0.00 0.00 43.12 1.40
238 249 7.920682 CACTGTAATTTGGAAGCCCATATAAAC 59.079 37.037 0.00 0.00 43.12 2.01
239 250 7.617723 ACTGTAATTTGGAAGCCCATATAAACA 59.382 33.333 0.00 0.00 43.12 2.83
240 251 8.546083 TGTAATTTGGAAGCCCATATAAACAT 57.454 30.769 0.00 0.00 43.12 2.71
241 252 8.986991 TGTAATTTGGAAGCCCATATAAACATT 58.013 29.630 0.00 0.00 43.12 2.71
242 253 9.260002 GTAATTTGGAAGCCCATATAAACATTG 57.740 33.333 0.00 0.00 43.12 2.82
243 254 4.935352 TGGAAGCCCATATAAACATTGC 57.065 40.909 0.00 0.00 37.58 3.56
244 255 4.285020 TGGAAGCCCATATAAACATTGCA 58.715 39.130 0.00 0.00 37.58 4.08
245 256 4.900652 TGGAAGCCCATATAAACATTGCAT 59.099 37.500 0.00 0.00 37.58 3.96
246 257 5.366186 TGGAAGCCCATATAAACATTGCATT 59.634 36.000 0.00 0.00 37.58 3.56
247 258 6.126825 TGGAAGCCCATATAAACATTGCATTT 60.127 34.615 0.00 0.00 37.58 2.32
248 259 6.767423 GGAAGCCCATATAAACATTGCATTTT 59.233 34.615 0.00 0.00 0.00 1.82
249 260 7.254863 GGAAGCCCATATAAACATTGCATTTTG 60.255 37.037 0.00 0.00 0.00 2.44
250 261 6.652053 AGCCCATATAAACATTGCATTTTGT 58.348 32.000 0.00 0.00 0.00 2.83
251 262 6.762661 AGCCCATATAAACATTGCATTTTGTC 59.237 34.615 0.00 0.00 0.00 3.18
252 263 6.292274 GCCCATATAAACATTGCATTTTGTCG 60.292 38.462 0.00 0.00 0.00 4.35
253 264 6.977502 CCCATATAAACATTGCATTTTGTCGA 59.022 34.615 0.00 0.00 0.00 4.20
254 265 7.490725 CCCATATAAACATTGCATTTTGTCGAA 59.509 33.333 0.00 0.00 0.00 3.71
255 266 8.867935 CCATATAAACATTGCATTTTGTCGAAA 58.132 29.630 0.00 0.00 0.00 3.46
287 298 1.628447 GCATGCCGTTTTGCCATGTG 61.628 55.000 6.36 0.00 32.66 3.21
291 302 1.959085 CCGTTTTGCCATGTGCTCT 59.041 52.632 7.54 0.00 42.00 4.09
294 305 2.076100 CGTTTTGCCATGTGCTCTCTA 58.924 47.619 7.54 0.00 42.00 2.43
295 306 2.094894 CGTTTTGCCATGTGCTCTCTAG 59.905 50.000 7.54 0.00 42.00 2.43
296 307 3.338249 GTTTTGCCATGTGCTCTCTAGA 58.662 45.455 7.54 0.00 42.00 2.43
298 309 5.118990 GTTTTGCCATGTGCTCTCTAGATA 58.881 41.667 0.00 0.00 42.00 1.98
300 311 3.299503 TGCCATGTGCTCTCTAGATACA 58.700 45.455 0.00 0.00 42.00 2.29
302 313 4.244066 GCCATGTGCTCTCTAGATACATG 58.756 47.826 20.99 20.99 42.61 3.21
304 315 5.718724 CATGTGCTCTCTAGATACATGGA 57.281 43.478 20.57 0.00 41.13 3.41
305 316 6.283544 CATGTGCTCTCTAGATACATGGAT 57.716 41.667 20.57 0.00 41.13 3.41
306 317 5.973899 TGTGCTCTCTAGATACATGGATC 57.026 43.478 10.19 10.19 0.00 3.36
307 318 4.769488 TGTGCTCTCTAGATACATGGATCC 59.231 45.833 14.65 4.20 0.00 3.36
308 319 4.013050 TGCTCTCTAGATACATGGATCCG 58.987 47.826 14.65 6.40 0.00 4.18
311 322 5.825679 GCTCTCTAGATACATGGATCCGTAT 59.174 44.000 14.65 9.03 0.00 3.06
312 323 6.238621 GCTCTCTAGATACATGGATCCGTATG 60.239 46.154 14.65 12.47 0.00 2.39
327 367 9.475620 TGGATCCGTATGTAGACAAATCTATAT 57.524 33.333 7.39 0.22 40.98 0.86
329 369 9.653067 GATCCGTATGTAGACAAATCTATATCG 57.347 37.037 0.00 2.95 39.33 2.92
330 370 8.782339 TCCGTATGTAGACAAATCTATATCGA 57.218 34.615 0.00 0.00 39.33 3.59
351 391 6.848069 TCGATTAATTTGGGATGGAGGTAAT 58.152 36.000 0.00 0.00 0.00 1.89
353 393 8.100791 TCGATTAATTTGGGATGGAGGTAATAG 58.899 37.037 0.00 0.00 0.00 1.73
357 397 7.707467 AATTTGGGATGGAGGTAATAGTACT 57.293 36.000 0.00 0.00 0.00 2.73
358 398 6.494666 TTTGGGATGGAGGTAATAGTACTG 57.505 41.667 5.39 0.00 0.00 2.74
443 483 3.004629 AGACGAGAGCTGTCATCATCATC 59.995 47.826 9.76 0.00 38.83 2.92
444 484 2.957680 ACGAGAGCTGTCATCATCATCT 59.042 45.455 11.90 0.00 0.00 2.90
446 486 4.141981 ACGAGAGCTGTCATCATCATCTTT 60.142 41.667 11.90 0.00 0.00 2.52
449 489 6.645827 CGAGAGCTGTCATCATCATCTTTTAT 59.354 38.462 11.90 0.00 0.00 1.40
451 491 6.935771 AGAGCTGTCATCATCATCTTTTATCC 59.064 38.462 0.00 0.00 0.00 2.59
452 492 6.002704 AGCTGTCATCATCATCTTTTATCCC 58.997 40.000 0.00 0.00 0.00 3.85
455 495 7.521748 GCTGTCATCATCATCTTTTATCCCTTG 60.522 40.741 0.00 0.00 0.00 3.61
457 497 6.489361 GTCATCATCATCTTTTATCCCTTGCT 59.511 38.462 0.00 0.00 0.00 3.91
458 498 6.489022 TCATCATCATCTTTTATCCCTTGCTG 59.511 38.462 0.00 0.00 0.00 4.41
459 499 5.135383 TCATCATCTTTTATCCCTTGCTGG 58.865 41.667 0.00 0.00 0.00 4.85
470 510 1.767759 CCTTGCTGGGGATTTAGGTG 58.232 55.000 0.00 0.00 0.00 4.00
471 511 1.005924 CCTTGCTGGGGATTTAGGTGT 59.994 52.381 0.00 0.00 0.00 4.16
472 512 2.241176 CCTTGCTGGGGATTTAGGTGTA 59.759 50.000 0.00 0.00 0.00 2.90
473 513 3.117512 CCTTGCTGGGGATTTAGGTGTAT 60.118 47.826 0.00 0.00 0.00 2.29
474 514 3.576078 TGCTGGGGATTTAGGTGTATG 57.424 47.619 0.00 0.00 0.00 2.39
475 515 2.230660 GCTGGGGATTTAGGTGTATGC 58.769 52.381 0.00 0.00 0.00 3.14
476 516 2.158608 GCTGGGGATTTAGGTGTATGCT 60.159 50.000 0.00 0.00 0.00 3.79
477 517 3.744660 CTGGGGATTTAGGTGTATGCTC 58.255 50.000 0.00 0.00 0.00 4.26
478 518 3.392616 CTGGGGATTTAGGTGTATGCTCT 59.607 47.826 0.00 0.00 0.00 4.09
479 519 3.136443 TGGGGATTTAGGTGTATGCTCTG 59.864 47.826 0.00 0.00 0.00 3.35
480 520 3.136626 GGGGATTTAGGTGTATGCTCTGT 59.863 47.826 0.00 0.00 0.00 3.41
481 521 4.347000 GGGGATTTAGGTGTATGCTCTGTA 59.653 45.833 0.00 0.00 0.00 2.74
482 522 5.298347 GGGATTTAGGTGTATGCTCTGTAC 58.702 45.833 0.00 0.00 0.00 2.90
483 523 5.298347 GGATTTAGGTGTATGCTCTGTACC 58.702 45.833 0.00 0.00 0.00 3.34
484 524 5.163343 GGATTTAGGTGTATGCTCTGTACCA 60.163 44.000 0.00 0.00 33.88 3.25
485 525 5.748670 TTTAGGTGTATGCTCTGTACCAA 57.251 39.130 0.00 0.00 33.88 3.67
486 526 5.748670 TTAGGTGTATGCTCTGTACCAAA 57.251 39.130 0.00 0.00 33.88 3.28
487 527 4.844349 AGGTGTATGCTCTGTACCAAAT 57.156 40.909 0.00 0.00 33.88 2.32
488 528 5.179452 AGGTGTATGCTCTGTACCAAATT 57.821 39.130 0.00 0.00 33.88 1.82
489 529 5.570320 AGGTGTATGCTCTGTACCAAATTT 58.430 37.500 0.00 0.00 33.88 1.82
490 530 5.648092 AGGTGTATGCTCTGTACCAAATTTC 59.352 40.000 0.00 0.00 33.88 2.17
491 531 5.163652 GGTGTATGCTCTGTACCAAATTTCC 60.164 44.000 0.00 0.00 0.00 3.13
492 532 5.648092 GTGTATGCTCTGTACCAAATTTCCT 59.352 40.000 0.00 0.00 0.00 3.36
493 533 5.880332 TGTATGCTCTGTACCAAATTTCCTC 59.120 40.000 0.00 0.00 0.00 3.71
494 534 4.640771 TGCTCTGTACCAAATTTCCTCT 57.359 40.909 0.00 0.00 0.00 3.69
495 535 4.579869 TGCTCTGTACCAAATTTCCTCTC 58.420 43.478 0.00 0.00 0.00 3.20
496 536 4.287067 TGCTCTGTACCAAATTTCCTCTCT 59.713 41.667 0.00 0.00 0.00 3.10
497 537 4.873259 GCTCTGTACCAAATTTCCTCTCTC 59.127 45.833 0.00 0.00 0.00 3.20
498 538 5.337975 GCTCTGTACCAAATTTCCTCTCTCT 60.338 44.000 0.00 0.00 0.00 3.10
499 539 6.287589 TCTGTACCAAATTTCCTCTCTCTC 57.712 41.667 0.00 0.00 0.00 3.20
500 540 6.019748 TCTGTACCAAATTTCCTCTCTCTCT 58.980 40.000 0.00 0.00 0.00 3.10
501 541 6.153680 TCTGTACCAAATTTCCTCTCTCTCTC 59.846 42.308 0.00 0.00 0.00 3.20
502 542 6.019748 TGTACCAAATTTCCTCTCTCTCTCT 58.980 40.000 0.00 0.00 0.00 3.10
503 543 6.498651 TGTACCAAATTTCCTCTCTCTCTCTT 59.501 38.462 0.00 0.00 0.00 2.85
504 544 6.446909 ACCAAATTTCCTCTCTCTCTCTTT 57.553 37.500 0.00 0.00 0.00 2.52
505 545 7.560796 ACCAAATTTCCTCTCTCTCTCTTTA 57.439 36.000 0.00 0.00 0.00 1.85
506 546 8.156822 ACCAAATTTCCTCTCTCTCTCTTTAT 57.843 34.615 0.00 0.00 0.00 1.40
507 547 9.273137 ACCAAATTTCCTCTCTCTCTCTTTATA 57.727 33.333 0.00 0.00 0.00 0.98
529 569 9.720667 TTATATATATTCAATGAAATGCTGCGC 57.279 29.630 0.00 0.00 0.00 6.09
530 570 2.953466 ATTCAATGAAATGCTGCGCT 57.047 40.000 9.73 0.00 0.00 5.92
531 571 1.985334 TTCAATGAAATGCTGCGCTG 58.015 45.000 9.73 10.04 0.00 5.18
532 572 1.166989 TCAATGAAATGCTGCGCTGA 58.833 45.000 19.32 1.07 0.00 4.26
533 573 1.135603 TCAATGAAATGCTGCGCTGAC 60.136 47.619 19.32 9.87 0.00 3.51
534 574 0.883153 AATGAAATGCTGCGCTGACA 59.117 45.000 19.32 15.15 0.00 3.58
535 575 0.450583 ATGAAATGCTGCGCTGACAG 59.549 50.000 19.32 2.87 40.80 3.51
541 581 4.834828 CTGCGCTGACAGCTTTTC 57.165 55.556 24.36 11.43 39.60 2.29
542 582 1.154525 CTGCGCTGACAGCTTTTCG 60.155 57.895 24.36 10.12 39.60 3.46
543 583 1.835483 CTGCGCTGACAGCTTTTCGT 61.835 55.000 24.36 0.00 39.60 3.85
544 584 1.154580 GCGCTGACAGCTTTTCGTC 60.155 57.895 24.36 2.63 39.60 4.20
545 585 1.831389 GCGCTGACAGCTTTTCGTCA 61.831 55.000 24.36 4.71 39.60 4.35
546 586 0.581529 CGCTGACAGCTTTTCGTCAA 59.418 50.000 24.36 0.00 41.39 3.18
547 587 1.003972 CGCTGACAGCTTTTCGTCAAA 60.004 47.619 24.36 0.00 41.39 2.69
548 588 2.538737 CGCTGACAGCTTTTCGTCAAAA 60.539 45.455 24.36 0.00 41.39 2.44
549 589 3.434637 GCTGACAGCTTTTCGTCAAAAA 58.565 40.909 20.41 0.00 41.39 1.94
580 620 0.657840 GAGCACGATATGTTGGGCAC 59.342 55.000 6.71 0.00 40.89 5.01
631 672 1.808945 CAACCAGACTGATGCCTTGAC 59.191 52.381 3.32 0.00 0.00 3.18
659 700 2.618709 ACAAGCAAGCTCCAGTTTGTAC 59.381 45.455 12.14 0.00 38.32 2.90
660 701 2.880890 CAAGCAAGCTCCAGTTTGTACT 59.119 45.455 5.23 0.00 38.32 2.73
661 702 4.065088 CAAGCAAGCTCCAGTTTGTACTA 58.935 43.478 5.23 0.00 38.32 1.82
674 715 9.715121 TCCAGTTTGTACTAATTCGTAAAGATT 57.285 29.630 0.00 0.00 31.96 2.40
724 765 2.031944 GGAGCGGAAGAAGAAAACACAC 60.032 50.000 0.00 0.00 0.00 3.82
727 768 2.599142 GCGGAAGAAGAAAACACACGAC 60.599 50.000 0.00 0.00 0.00 4.34
728 769 2.347292 CGGAAGAAGAAAACACACGACG 60.347 50.000 0.00 0.00 0.00 5.12
773 814 1.909287 TACGGCTGCACCCACTACA 60.909 57.895 0.50 0.00 33.26 2.74
841 922 1.910722 CCTCCACATGCCTAGCACT 59.089 57.895 0.00 0.00 43.04 4.40
852 933 0.101399 CCTAGCACTACACTGCCGAG 59.899 60.000 0.00 0.00 37.96 4.63
853 934 0.526524 CTAGCACTACACTGCCGAGC 60.527 60.000 0.00 0.00 37.96 5.03
854 935 0.965866 TAGCACTACACTGCCGAGCT 60.966 55.000 0.00 0.00 37.96 4.09
855 936 2.097038 GCACTACACTGCCGAGCTG 61.097 63.158 0.00 0.00 0.00 4.24
856 937 2.097038 CACTACACTGCCGAGCTGC 61.097 63.158 0.00 0.00 0.00 5.25
883 964 3.070018 CCTTTGCTGACCAGAGTAACTG 58.930 50.000 0.47 0.00 45.36 3.16
900 989 2.985847 GGCACACTCCTTGGCACC 60.986 66.667 0.00 0.00 39.31 5.01
959 1049 4.863925 GCAGCGGTCTCGGCTCTC 62.864 72.222 0.00 0.00 39.08 3.20
968 1058 1.141455 GTCTCGGCTCTCCTACCTAGT 59.859 57.143 0.00 0.00 0.00 2.57
969 1059 2.368221 GTCTCGGCTCTCCTACCTAGTA 59.632 54.545 0.00 0.00 0.00 1.82
970 1060 2.633967 TCTCGGCTCTCCTACCTAGTAG 59.366 54.545 0.00 0.00 36.04 2.57
971 1061 1.072015 TCGGCTCTCCTACCTAGTAGC 59.928 57.143 0.00 0.00 35.06 3.58
972 1062 1.072648 CGGCTCTCCTACCTAGTAGCT 59.927 57.143 0.00 0.00 35.06 3.32
973 1063 2.302445 CGGCTCTCCTACCTAGTAGCTA 59.698 54.545 0.00 0.00 35.06 3.32
974 1064 3.678289 GGCTCTCCTACCTAGTAGCTAC 58.322 54.545 16.43 16.43 35.06 3.58
977 1067 3.651904 CTCTCCTACCTAGTAGCTACCCA 59.348 52.174 20.31 7.88 35.06 4.51
979 1069 4.668812 TCTCCTACCTAGTAGCTACCCAAT 59.331 45.833 20.31 4.42 35.06 3.16
980 1070 4.995536 TCCTACCTAGTAGCTACCCAATC 58.004 47.826 20.31 0.00 35.06 2.67
982 1072 3.589951 ACCTAGTAGCTACCCAATCGA 57.410 47.619 20.31 0.00 0.00 3.59
983 1073 3.220940 ACCTAGTAGCTACCCAATCGAC 58.779 50.000 20.31 0.00 0.00 4.20
985 1075 3.827302 CCTAGTAGCTACCCAATCGACAT 59.173 47.826 20.31 0.29 0.00 3.06
1251 1363 2.478370 CCAGTATGAAATGCAGGTTGCG 60.478 50.000 0.00 0.00 43.46 4.85
1252 1364 2.419673 CAGTATGAAATGCAGGTTGCGA 59.580 45.455 0.00 0.00 43.46 5.10
1253 1365 3.065786 CAGTATGAAATGCAGGTTGCGAT 59.934 43.478 0.00 0.00 43.46 4.58
1287 1399 2.756760 GCTCCAGCTCCATTGAAAATGA 59.243 45.455 1.54 0.00 38.21 2.57
1291 1403 3.508762 CAGCTCCATTGAAAATGACAGC 58.491 45.455 12.45 12.45 0.00 4.40
1302 1414 6.682423 TGAAAATGACAGCGATGTATTGAT 57.318 33.333 6.16 0.00 0.00 2.57
1406 1518 1.743252 CTCGCCCAACAAGAGCCTC 60.743 63.158 0.00 0.00 0.00 4.70
1499 1611 4.587189 ATACTCGCCTTCGCCGCC 62.587 66.667 0.00 0.00 35.26 6.13
1547 1659 2.483876 GCGACAAGGCTCATATTGCTA 58.516 47.619 0.00 0.00 0.00 3.49
1548 1660 2.478134 GCGACAAGGCTCATATTGCTAG 59.522 50.000 0.00 0.00 0.00 3.42
1558 1670 5.929058 CTCATATTGCTAGGAGCCTATGA 57.071 43.478 14.85 14.85 41.51 2.15
1559 1671 5.904941 CTCATATTGCTAGGAGCCTATGAG 58.095 45.833 21.38 21.38 45.58 2.90
1560 1672 4.713814 TCATATTGCTAGGAGCCTATGAGG 59.286 45.833 12.96 0.00 41.51 3.86
1561 1673 2.775490 TTGCTAGGAGCCTATGAGGA 57.225 50.000 0.00 0.00 41.51 3.71
1562 1674 2.002505 TGCTAGGAGCCTATGAGGAC 57.997 55.000 0.00 0.00 41.51 3.85
1563 1675 1.217942 TGCTAGGAGCCTATGAGGACA 59.782 52.381 0.00 0.00 41.51 4.02
1564 1676 1.616374 GCTAGGAGCCTATGAGGACAC 59.384 57.143 0.00 0.00 37.67 3.67
1565 1677 2.754867 GCTAGGAGCCTATGAGGACACT 60.755 54.545 0.00 0.00 37.67 3.55
1566 1678 1.786937 AGGAGCCTATGAGGACACTG 58.213 55.000 0.00 0.00 37.67 3.66
1574 1686 3.686726 CCTATGAGGACACTGCTTTGTTC 59.313 47.826 0.00 0.00 37.67 3.18
1717 1857 1.367840 GAACGTGGCTCACCTCACT 59.632 57.895 0.00 0.00 36.63 3.41
1726 1866 1.544314 GCTCACCTCACTGAAGCCTTT 60.544 52.381 0.00 0.00 0.00 3.11
1729 1869 0.183492 ACCTCACTGAAGCCTTTGCA 59.817 50.000 0.00 0.00 41.13 4.08
1783 1938 1.209747 CTTTCAGGTACCTAGCCCACC 59.790 57.143 15.80 0.00 0.00 4.61
1784 1939 0.619543 TTCAGGTACCTAGCCCACCC 60.620 60.000 15.80 0.00 32.43 4.61
1785 1940 1.306654 CAGGTACCTAGCCCACCCA 60.307 63.158 15.80 0.00 32.43 4.51
1786 1941 0.912487 CAGGTACCTAGCCCACCCAA 60.912 60.000 15.80 0.00 32.43 4.12
1787 1942 0.178855 AGGTACCTAGCCCACCCAAA 60.179 55.000 14.41 0.00 32.43 3.28
1788 1943 0.034767 GGTACCTAGCCCACCCAAAC 60.035 60.000 4.06 0.00 0.00 2.93
1789 1944 0.694196 GTACCTAGCCCACCCAAACA 59.306 55.000 0.00 0.00 0.00 2.83
1790 1945 0.694196 TACCTAGCCCACCCAAACAC 59.306 55.000 0.00 0.00 0.00 3.32
1791 1946 1.304134 CCTAGCCCACCCAAACACC 60.304 63.158 0.00 0.00 0.00 4.16
1792 1947 1.304134 CTAGCCCACCCAAACACCC 60.304 63.158 0.00 0.00 0.00 4.61
1793 1948 2.075355 CTAGCCCACCCAAACACCCA 62.075 60.000 0.00 0.00 0.00 4.51
1794 1949 2.360439 TAGCCCACCCAAACACCCAC 62.360 60.000 0.00 0.00 0.00 4.61
1804 1959 0.325203 AAACACCCACAGCCCAACTT 60.325 50.000 0.00 0.00 0.00 2.66
1864 2020 4.019051 TCCCTCTCTGCATTTCTCATTTGA 60.019 41.667 0.00 0.00 0.00 2.69
2189 2345 0.109412 CGTCTACCTGTTCGTGACCC 60.109 60.000 0.00 0.00 0.00 4.46
2284 2440 1.139256 TGCAGGGTCGTAAACTGACAA 59.861 47.619 0.00 0.00 38.10 3.18
2294 2479 6.081693 GTCGTAAACTGACAAACACTTGTTT 58.918 36.000 1.35 1.35 45.98 2.83
2299 2484 6.811253 AACTGACAAACACTTGTTTCACTA 57.189 33.333 4.32 0.00 45.98 2.74
2300 2485 6.178239 ACTGACAAACACTTGTTTCACTAC 57.822 37.500 4.32 0.00 45.98 2.73
2310 2495 3.786516 TGTTTCACTACACGTCACTCA 57.213 42.857 0.00 0.00 0.00 3.41
2311 2496 4.316205 TGTTTCACTACACGTCACTCAT 57.684 40.909 0.00 0.00 0.00 2.90
2318 2503 5.037385 CACTACACGTCACTCATAATCTGG 58.963 45.833 0.00 0.00 0.00 3.86
2363 2549 5.894807 GCAAATGCAGTGGAGTTATACATT 58.105 37.500 0.00 0.00 41.59 2.71
2364 2550 5.745294 GCAAATGCAGTGGAGTTATACATTG 59.255 40.000 0.00 0.00 41.59 2.82
2382 2572 1.144969 TGATTGAGTTTCGGACACGC 58.855 50.000 0.00 0.00 40.69 5.34
2572 2771 0.320683 CATGTGTCGAGCAACCCTGA 60.321 55.000 0.00 0.00 0.00 3.86
2574 2773 1.112916 TGTGTCGAGCAACCCTGAGA 61.113 55.000 0.00 0.00 0.00 3.27
2585 2784 2.432510 CAACCCTGAGAGCCTACCTAAG 59.567 54.545 0.00 0.00 0.00 2.18
2587 2786 2.315155 ACCCTGAGAGCCTACCTAAGAA 59.685 50.000 0.00 0.00 0.00 2.52
2589 2788 3.366396 CCTGAGAGCCTACCTAAGAACA 58.634 50.000 0.00 0.00 0.00 3.18
2592 2791 4.353777 TGAGAGCCTACCTAAGAACATGT 58.646 43.478 0.00 0.00 0.00 3.21
2594 2793 3.118592 AGAGCCTACCTAAGAACATGTGC 60.119 47.826 0.00 0.00 0.00 4.57
2607 2806 5.815581 AGAACATGTGCTTACCCTGATTAA 58.184 37.500 0.00 0.00 0.00 1.40
2631 2830 7.569639 AAAAAGAAGAAGAGACCTAACAACC 57.430 36.000 0.00 0.00 0.00 3.77
2645 2848 4.082571 CCTAACAACCAGGCAAAGATTCAG 60.083 45.833 0.00 0.00 0.00 3.02
2652 2855 2.298163 CAGGCAAAGATTCAGCAGGTTT 59.702 45.455 0.00 0.00 0.00 3.27
2653 2856 3.507233 CAGGCAAAGATTCAGCAGGTTTA 59.493 43.478 0.00 0.00 0.00 2.01
2654 2857 4.022068 CAGGCAAAGATTCAGCAGGTTTAA 60.022 41.667 0.00 0.00 0.00 1.52
2655 2858 4.774200 AGGCAAAGATTCAGCAGGTTTAAT 59.226 37.500 0.00 0.00 0.00 1.40
2664 2867 9.515226 AGATTCAGCAGGTTTAATTAGTGTTTA 57.485 29.630 0.00 0.00 0.00 2.01
2712 2920 6.319141 ACAACAATTCTAGTTTGAGCTTCC 57.681 37.500 12.91 0.00 0.00 3.46
2713 2921 5.049405 ACAACAATTCTAGTTTGAGCTTCCG 60.049 40.000 12.91 0.00 0.00 4.30
2716 2924 3.314541 TTCTAGTTTGAGCTTCCGTCC 57.685 47.619 0.00 0.00 0.00 4.79
2717 2925 2.526432 TCTAGTTTGAGCTTCCGTCCT 58.474 47.619 0.00 0.00 0.00 3.85
2718 2926 2.897969 TCTAGTTTGAGCTTCCGTCCTT 59.102 45.455 0.00 0.00 0.00 3.36
2719 2927 4.084287 TCTAGTTTGAGCTTCCGTCCTTA 58.916 43.478 0.00 0.00 0.00 2.69
2720 2928 3.764237 AGTTTGAGCTTCCGTCCTTAA 57.236 42.857 0.00 0.00 0.00 1.85
2723 2931 3.973206 TTGAGCTTCCGTCCTTAATCA 57.027 42.857 0.00 0.00 0.00 2.57
2750 2958 6.378710 AAGAAGAAGAAACCTAACAACAGC 57.621 37.500 0.00 0.00 0.00 4.40
2751 2959 4.822350 AGAAGAAGAAACCTAACAACAGCC 59.178 41.667 0.00 0.00 0.00 4.85
2752 2960 3.487372 AGAAGAAACCTAACAACAGCCC 58.513 45.455 0.00 0.00 0.00 5.19
2753 2961 3.138468 AGAAGAAACCTAACAACAGCCCT 59.862 43.478 0.00 0.00 0.00 5.19
2754 2962 2.863809 AGAAACCTAACAACAGCCCTG 58.136 47.619 0.00 0.00 0.00 4.45
2755 2963 2.441750 AGAAACCTAACAACAGCCCTGA 59.558 45.455 1.69 0.00 0.00 3.86
2756 2964 3.117663 AGAAACCTAACAACAGCCCTGAA 60.118 43.478 1.69 0.00 0.00 3.02
2757 2965 3.306472 AACCTAACAACAGCCCTGAAA 57.694 42.857 1.69 0.00 0.00 2.69
2758 2966 3.306472 ACCTAACAACAGCCCTGAAAA 57.694 42.857 1.69 0.00 0.00 2.29
2759 2967 3.637769 ACCTAACAACAGCCCTGAAAAA 58.362 40.909 1.69 0.00 0.00 1.94
2760 2968 3.636764 ACCTAACAACAGCCCTGAAAAAG 59.363 43.478 1.69 0.00 0.00 2.27
2761 2969 3.888930 CCTAACAACAGCCCTGAAAAAGA 59.111 43.478 1.69 0.00 0.00 2.52
2762 2970 4.524328 CCTAACAACAGCCCTGAAAAAGAT 59.476 41.667 1.69 0.00 0.00 2.40
2763 2971 5.011023 CCTAACAACAGCCCTGAAAAAGATT 59.989 40.000 1.69 0.00 0.00 2.40
2764 2972 4.590850 ACAACAGCCCTGAAAAAGATTC 57.409 40.909 1.69 0.00 0.00 2.52
2765 2973 3.960102 ACAACAGCCCTGAAAAAGATTCA 59.040 39.130 1.69 0.00 0.00 2.57
2766 2974 4.590222 ACAACAGCCCTGAAAAAGATTCAT 59.410 37.500 1.69 0.00 0.00 2.57
2767 2975 5.166398 CAACAGCCCTGAAAAAGATTCATC 58.834 41.667 1.69 0.00 0.00 2.92
2768 2976 4.410099 ACAGCCCTGAAAAAGATTCATCA 58.590 39.130 1.69 0.00 0.00 3.07
2769 2977 4.461781 ACAGCCCTGAAAAAGATTCATCAG 59.538 41.667 1.69 0.00 39.16 2.90
2770 2978 3.446516 AGCCCTGAAAAAGATTCATCAGC 59.553 43.478 0.00 0.00 38.34 4.26
2771 2979 3.446516 GCCCTGAAAAAGATTCATCAGCT 59.553 43.478 0.00 0.00 38.34 4.24
2772 2980 4.081807 GCCCTGAAAAAGATTCATCAGCTT 60.082 41.667 0.00 0.00 38.34 3.74
2773 2981 5.648572 CCCTGAAAAAGATTCATCAGCTTC 58.351 41.667 0.00 0.00 38.34 3.86
2774 2982 5.184479 CCCTGAAAAAGATTCATCAGCTTCA 59.816 40.000 0.00 0.00 38.34 3.02
2775 2983 6.323266 CCTGAAAAAGATTCATCAGCTTCAG 58.677 40.000 13.05 13.05 38.34 3.02
2776 2984 6.072064 CCTGAAAAAGATTCATCAGCTTCAGT 60.072 38.462 16.03 0.00 38.34 3.41
2777 2985 6.675026 TGAAAAAGATTCATCAGCTTCAGTG 58.325 36.000 0.00 0.00 0.00 3.66
2778 2986 6.263842 TGAAAAAGATTCATCAGCTTCAGTGT 59.736 34.615 0.00 0.00 0.00 3.55
2779 2987 6.645790 AAAAGATTCATCAGCTTCAGTGTT 57.354 33.333 0.00 0.00 0.00 3.32
2780 2988 6.645790 AAAGATTCATCAGCTTCAGTGTTT 57.354 33.333 0.00 0.00 0.00 2.83
2781 2989 5.624344 AGATTCATCAGCTTCAGTGTTTG 57.376 39.130 0.00 0.00 0.00 2.93
2782 2990 3.631145 TTCATCAGCTTCAGTGTTTGC 57.369 42.857 0.00 0.00 0.00 3.68
2783 2991 2.854963 TCATCAGCTTCAGTGTTTGCT 58.145 42.857 0.00 0.00 36.04 3.91
2788 2996 1.678101 AGCTTCAGTGTTTGCTGAACC 59.322 47.619 4.61 0.00 46.74 3.62
2789 2997 1.597937 GCTTCAGTGTTTGCTGAACCG 60.598 52.381 4.61 0.00 46.74 4.44
2790 2998 1.002468 CTTCAGTGTTTGCTGAACCGG 60.002 52.381 0.00 0.00 46.74 5.28
2791 2999 0.179234 TCAGTGTTTGCTGAACCGGA 59.821 50.000 9.46 0.00 41.93 5.14
2792 3000 0.307760 CAGTGTTTGCTGAACCGGAC 59.692 55.000 9.46 1.77 38.70 4.79
2793 3001 0.107410 AGTGTTTGCTGAACCGGACA 60.107 50.000 9.46 7.24 37.45 4.02
2794 3002 0.736053 GTGTTTGCTGAACCGGACAA 59.264 50.000 9.46 1.10 37.45 3.18
2795 3003 1.021202 TGTTTGCTGAACCGGACAAG 58.979 50.000 9.46 2.64 37.45 3.16
2796 3004 0.317854 GTTTGCTGAACCGGACAAGC 60.318 55.000 9.46 14.28 31.85 4.01
2797 3005 0.749818 TTTGCTGAACCGGACAAGCA 60.750 50.000 20.47 20.47 0.00 3.91
2798 3006 0.749818 TTGCTGAACCGGACAAGCAA 60.750 50.000 26.90 26.90 39.51 3.91
2799 3007 1.165907 TGCTGAACCGGACAAGCAAG 61.166 55.000 21.56 6.10 0.00 4.01
2800 3008 1.166531 GCTGAACCGGACAAGCAAGT 61.167 55.000 9.46 0.00 0.00 3.16
2801 3009 1.308998 CTGAACCGGACAAGCAAGTT 58.691 50.000 9.46 0.00 0.00 2.66
2802 3010 1.002468 CTGAACCGGACAAGCAAGTTG 60.002 52.381 9.46 0.00 42.48 3.16
2803 3011 0.310854 GAACCGGACAAGCAAGTTGG 59.689 55.000 9.46 0.00 40.90 3.77
2804 3012 0.395173 AACCGGACAAGCAAGTTGGT 60.395 50.000 9.46 0.63 40.90 3.67
2805 3013 0.470766 ACCGGACAAGCAAGTTGGTA 59.529 50.000 9.46 0.00 40.90 3.25
2806 3014 1.134037 ACCGGACAAGCAAGTTGGTAA 60.134 47.619 9.46 0.00 40.90 2.85
2807 3015 1.535462 CCGGACAAGCAAGTTGGTAAG 59.465 52.381 8.21 6.92 40.90 2.34
2808 3016 2.489971 CGGACAAGCAAGTTGGTAAGA 58.510 47.619 8.21 0.00 40.90 2.10
2809 3017 2.875933 CGGACAAGCAAGTTGGTAAGAA 59.124 45.455 8.21 0.00 40.90 2.52
2810 3018 3.303791 CGGACAAGCAAGTTGGTAAGAAC 60.304 47.826 8.21 4.90 40.90 3.01
2811 3019 3.630312 GGACAAGCAAGTTGGTAAGAACA 59.370 43.478 8.21 0.00 40.90 3.18
2812 3020 4.097286 GGACAAGCAAGTTGGTAAGAACAA 59.903 41.667 8.21 0.00 40.90 2.83
2813 3021 5.221244 GGACAAGCAAGTTGGTAAGAACAAT 60.221 40.000 8.21 0.00 40.90 2.71
2821 3029 7.803659 GCAAGTTGGTAAGAACAATTCTAGTTC 59.196 37.037 4.75 0.00 44.32 3.01
2832 3040 8.921216 GAACAATTCTAGTTCGAGTTTTTCTC 57.079 34.615 0.00 0.00 36.40 2.87
2836 3044 7.659652 ATTCTAGTTCGAGTTTTTCTCCTTG 57.340 36.000 0.00 0.00 39.84 3.61
2841 3049 9.204570 CTAGTTCGAGTTTTTCTCCTTGATTAA 57.795 33.333 0.00 0.00 39.84 1.40
2843 3051 8.560374 AGTTCGAGTTTTTCTCCTTGATTAAAG 58.440 33.333 0.00 0.00 39.84 1.85
2844 3052 6.899114 TCGAGTTTTTCTCCTTGATTAAAGC 58.101 36.000 0.00 0.00 39.84 3.51
2845 3053 6.710744 TCGAGTTTTTCTCCTTGATTAAAGCT 59.289 34.615 0.00 0.00 39.84 3.74
2848 3056 6.040842 AGTTTTTCTCCTTGATTAAAGCTGCA 59.959 34.615 1.02 0.00 34.24 4.41
2849 3057 6.403866 TTTTCTCCTTGATTAAAGCTGCAA 57.596 33.333 1.02 0.00 34.24 4.08
2850 3058 6.403866 TTTCTCCTTGATTAAAGCTGCAAA 57.596 33.333 1.02 0.00 34.24 3.68
2851 3059 6.403866 TTCTCCTTGATTAAAGCTGCAAAA 57.596 33.333 1.02 0.00 34.24 2.44
2892 3100 8.890124 TGAAAGAAAAGCAATCAATCAATCAA 57.110 26.923 0.00 0.00 0.00 2.57
2893 3101 8.984764 TGAAAGAAAAGCAATCAATCAATCAAG 58.015 29.630 0.00 0.00 0.00 3.02
2941 3149 0.610174 TGAGCACAAGACAGGGCTAG 59.390 55.000 0.00 0.00 36.59 3.42
2943 3151 0.838122 AGCACAAGACAGGGCTAGGT 60.838 55.000 0.00 0.00 34.25 3.08
2957 3165 2.036604 GGCTAGGTAAGAAGCTGCTAGG 59.963 54.545 0.90 0.00 38.80 3.02
3024 3233 1.798626 TCCACTCATGAGGCTAGCAT 58.201 50.000 26.08 10.08 0.00 3.79
3025 3234 2.121948 TCCACTCATGAGGCTAGCATT 58.878 47.619 26.08 3.52 0.00 3.56
3026 3235 2.507058 TCCACTCATGAGGCTAGCATTT 59.493 45.455 26.08 0.58 0.00 2.32
3027 3236 2.877168 CCACTCATGAGGCTAGCATTTC 59.123 50.000 26.08 11.26 0.00 2.17
3028 3237 3.433314 CCACTCATGAGGCTAGCATTTCT 60.433 47.826 26.08 3.70 0.00 2.52
3029 3238 4.197750 CACTCATGAGGCTAGCATTTCTT 58.802 43.478 26.08 6.40 0.00 2.52
3030 3239 4.272991 CACTCATGAGGCTAGCATTTCTTC 59.727 45.833 26.08 4.55 0.00 2.87
3031 3240 3.461061 TCATGAGGCTAGCATTTCTTCG 58.539 45.455 18.24 4.36 0.00 3.79
3079 3288 1.661112 GCATGTTGTAGTCGCCTCTTC 59.339 52.381 0.00 0.00 0.00 2.87
3088 3297 0.109039 GTCGCCTCTTCAGTCCTCAC 60.109 60.000 0.00 0.00 0.00 3.51
3203 3467 4.647564 ATTAGGCGGATCCAATTCATCT 57.352 40.909 13.41 0.63 37.29 2.90
3205 3469 1.770658 AGGCGGATCCAATTCATCTCA 59.229 47.619 13.41 0.00 37.29 3.27
3212 3476 5.567430 GGATCCAATTCATCTCATCCATGA 58.433 41.667 6.95 0.00 31.68 3.07
3234 3498 5.939883 TGAAATCACTTTGATCCAACGATCT 59.060 36.000 0.00 0.00 44.61 2.75
3253 3517 4.681835 TCTACGTTGCTCTAGAGTTCAC 57.318 45.455 20.75 13.29 0.00 3.18
3254 3518 4.325119 TCTACGTTGCTCTAGAGTTCACT 58.675 43.478 20.75 4.42 0.00 3.41
3255 3519 3.290308 ACGTTGCTCTAGAGTTCACTG 57.710 47.619 20.75 12.51 0.00 3.66
3256 3520 2.885266 ACGTTGCTCTAGAGTTCACTGA 59.115 45.455 20.75 0.00 0.00 3.41
3257 3521 3.318275 ACGTTGCTCTAGAGTTCACTGAA 59.682 43.478 20.75 1.11 0.00 3.02
3258 3522 3.670991 CGTTGCTCTAGAGTTCACTGAAC 59.329 47.826 20.75 13.25 42.25 3.18
3259 3523 4.621991 GTTGCTCTAGAGTTCACTGAACA 58.378 43.478 20.75 4.38 44.11 3.18
3260 3524 5.233988 GTTGCTCTAGAGTTCACTGAACAT 58.766 41.667 20.75 12.96 44.11 2.71
3261 3525 5.474578 TGCTCTAGAGTTCACTGAACATT 57.525 39.130 20.75 12.33 44.11 2.71
3262 3526 5.858381 TGCTCTAGAGTTCACTGAACATTT 58.142 37.500 20.75 10.25 44.11 2.32
3263 3527 6.993079 TGCTCTAGAGTTCACTGAACATTTA 58.007 36.000 20.75 10.74 44.11 1.40
3264 3528 7.093354 TGCTCTAGAGTTCACTGAACATTTAG 58.907 38.462 20.75 17.55 44.11 1.85
3265 3529 7.039714 TGCTCTAGAGTTCACTGAACATTTAGA 60.040 37.037 20.75 19.85 44.11 2.10
3266 3530 7.487829 GCTCTAGAGTTCACTGAACATTTAGAG 59.512 40.741 28.17 28.17 44.11 2.43
3267 3531 7.316640 TCTAGAGTTCACTGAACATTTAGAGC 58.683 38.462 21.39 3.41 44.11 4.09
3268 3532 5.241662 AGAGTTCACTGAACATTTAGAGCC 58.758 41.667 21.39 2.43 44.11 4.70
3269 3533 4.973168 AGTTCACTGAACATTTAGAGCCA 58.027 39.130 21.39 0.00 44.11 4.75
3270 3534 4.757149 AGTTCACTGAACATTTAGAGCCAC 59.243 41.667 21.39 0.00 44.11 5.01
3271 3535 3.674997 TCACTGAACATTTAGAGCCACC 58.325 45.455 0.00 0.00 0.00 4.61
3272 3536 3.072330 TCACTGAACATTTAGAGCCACCA 59.928 43.478 0.00 0.00 0.00 4.17
3273 3537 4.012374 CACTGAACATTTAGAGCCACCAT 58.988 43.478 0.00 0.00 0.00 3.55
3274 3538 4.012374 ACTGAACATTTAGAGCCACCATG 58.988 43.478 0.00 0.00 0.00 3.66
3275 3539 3.355378 TGAACATTTAGAGCCACCATGG 58.645 45.455 11.19 11.19 41.55 3.66
3276 3540 3.245229 TGAACATTTAGAGCCACCATGGT 60.245 43.478 13.00 13.00 40.46 3.55
3277 3541 4.018870 TGAACATTTAGAGCCACCATGGTA 60.019 41.667 19.28 0.00 40.46 3.25
3278 3542 4.584638 ACATTTAGAGCCACCATGGTAA 57.415 40.909 19.28 6.77 40.46 2.85
3279 3543 4.929479 ACATTTAGAGCCACCATGGTAAA 58.071 39.130 19.28 13.75 40.46 2.01
3280 3544 5.329399 ACATTTAGAGCCACCATGGTAAAA 58.671 37.500 19.28 11.33 40.46 1.52
3281 3545 5.418840 ACATTTAGAGCCACCATGGTAAAAG 59.581 40.000 19.28 12.55 40.46 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.596477 GCGCATGTTTTGGGGCAAA 60.596 52.632 0.30 0.00 41.96 3.68
46 47 2.068837 AATGTCAGCGCATGTTTTGG 57.931 45.000 11.47 0.00 0.00 3.28
57 58 8.345724 AGGGAATGATAATCAATAATGTCAGC 57.654 34.615 0.00 0.00 0.00 4.26
75 76 0.104120 TGATACACGGCGAGGGAATG 59.896 55.000 16.62 1.84 0.00 2.67
76 77 0.104304 GTGATACACGGCGAGGGAAT 59.896 55.000 16.62 0.78 0.00 3.01
77 78 1.252215 TGTGATACACGGCGAGGGAA 61.252 55.000 16.62 0.00 37.14 3.97
85 86 0.862490 TGTGCGTTTGTGATACACGG 59.138 50.000 0.00 0.00 37.14 4.94
138 148 2.099592 GGTGCATTGTACCCATGTGATG 59.900 50.000 12.50 0.00 31.89 3.07
183 194 3.043121 TACGGTGGCGAAAACGGC 61.043 61.111 9.08 9.08 0.00 5.68
208 219 2.525368 GCTTCCAAATTACAGTGGGGT 58.475 47.619 0.00 0.00 35.46 4.95
209 220 1.824852 GGCTTCCAAATTACAGTGGGG 59.175 52.381 0.00 0.00 35.46 4.96
212 223 7.581213 TTATATGGGCTTCCAAATTACAGTG 57.419 36.000 0.00 0.00 44.86 3.66
213 224 7.617723 TGTTTATATGGGCTTCCAAATTACAGT 59.382 33.333 0.00 0.00 44.86 3.55
216 227 9.260002 CAATGTTTATATGGGCTTCCAAATTAC 57.740 33.333 0.00 0.00 44.86 1.89
218 229 6.767423 GCAATGTTTATATGGGCTTCCAAATT 59.233 34.615 0.00 0.00 44.86 1.82
287 298 4.013728 ACGGATCCATGTATCTAGAGAGC 58.986 47.826 13.41 0.00 0.00 4.09
291 302 7.769507 GTCTACATACGGATCCATGTATCTAGA 59.230 40.741 19.89 17.20 37.10 2.43
294 305 6.246163 TGTCTACATACGGATCCATGTATCT 58.754 40.000 19.89 8.44 37.10 1.98
295 306 6.510879 TGTCTACATACGGATCCATGTATC 57.489 41.667 19.89 16.59 37.10 2.24
296 307 6.911250 TTGTCTACATACGGATCCATGTAT 57.089 37.500 19.89 13.68 37.10 2.29
298 309 5.607939 TTTGTCTACATACGGATCCATGT 57.392 39.130 18.76 18.76 38.81 3.21
300 311 6.672266 AGATTTGTCTACATACGGATCCAT 57.328 37.500 13.41 0.00 0.00 3.41
302 313 9.953697 GATATAGATTTGTCTACATACGGATCC 57.046 37.037 0.00 0.00 0.00 3.36
303 314 9.653067 CGATATAGATTTGTCTACATACGGATC 57.347 37.037 0.00 0.00 0.00 3.36
304 315 9.392259 TCGATATAGATTTGTCTACATACGGAT 57.608 33.333 0.00 0.00 0.00 4.18
305 316 8.782339 TCGATATAGATTTGTCTACATACGGA 57.218 34.615 0.00 0.00 0.00 4.69
327 367 4.788925 ACCTCCATCCCAAATTAATCGA 57.211 40.909 0.00 0.00 0.00 3.59
335 375 5.163237 GCAGTACTATTACCTCCATCCCAAA 60.163 44.000 0.00 0.00 0.00 3.28
342 382 6.308015 ACAAATGCAGTACTATTACCTCCA 57.692 37.500 0.00 0.00 0.00 3.86
451 491 1.005924 ACACCTAAATCCCCAGCAAGG 59.994 52.381 0.00 0.00 37.03 3.61
452 492 2.514458 ACACCTAAATCCCCAGCAAG 57.486 50.000 0.00 0.00 0.00 4.01
455 495 2.158608 AGCATACACCTAAATCCCCAGC 60.159 50.000 0.00 0.00 0.00 4.85
457 497 3.136443 CAGAGCATACACCTAAATCCCCA 59.864 47.826 0.00 0.00 0.00 4.96
458 498 3.136626 ACAGAGCATACACCTAAATCCCC 59.863 47.826 0.00 0.00 0.00 4.81
459 499 4.423625 ACAGAGCATACACCTAAATCCC 57.576 45.455 0.00 0.00 0.00 3.85
460 500 5.163343 TGGTACAGAGCATACACCTAAATCC 60.163 44.000 0.00 0.00 0.00 3.01
461 501 5.914033 TGGTACAGAGCATACACCTAAATC 58.086 41.667 0.00 0.00 0.00 2.17
462 502 5.950544 TGGTACAGAGCATACACCTAAAT 57.049 39.130 0.00 0.00 0.00 1.40
463 503 5.748670 TTGGTACAGAGCATACACCTAAA 57.251 39.130 0.00 0.00 42.39 1.85
464 504 5.748670 TTTGGTACAGAGCATACACCTAA 57.251 39.130 0.00 0.00 42.39 2.69
465 505 5.950544 ATTTGGTACAGAGCATACACCTA 57.049 39.130 0.00 0.00 42.39 3.08
466 506 4.844349 ATTTGGTACAGAGCATACACCT 57.156 40.909 0.00 0.00 42.39 4.00
467 507 5.163652 GGAAATTTGGTACAGAGCATACACC 60.164 44.000 0.00 0.00 42.39 4.16
468 508 5.648092 AGGAAATTTGGTACAGAGCATACAC 59.352 40.000 0.00 0.00 42.39 2.90
469 509 5.815581 AGGAAATTTGGTACAGAGCATACA 58.184 37.500 0.00 0.00 42.39 2.29
470 510 6.116126 AGAGGAAATTTGGTACAGAGCATAC 58.884 40.000 0.00 0.00 42.39 2.39
471 511 6.156949 AGAGAGGAAATTTGGTACAGAGCATA 59.843 38.462 0.00 0.00 42.39 3.14
472 512 5.045286 AGAGAGGAAATTTGGTACAGAGCAT 60.045 40.000 0.00 0.00 42.39 3.79
473 513 4.287067 AGAGAGGAAATTTGGTACAGAGCA 59.713 41.667 0.00 0.00 42.39 4.26
474 514 4.837972 AGAGAGGAAATTTGGTACAGAGC 58.162 43.478 0.00 0.00 42.39 4.09
475 515 6.154363 AGAGAGAGAGGAAATTTGGTACAGAG 59.846 42.308 0.00 0.00 42.39 3.35
476 516 6.019748 AGAGAGAGAGGAAATTTGGTACAGA 58.980 40.000 0.00 0.00 42.39 3.41
477 517 6.154363 AGAGAGAGAGAGGAAATTTGGTACAG 59.846 42.308 0.00 0.00 42.39 2.74
478 518 6.019748 AGAGAGAGAGAGGAAATTTGGTACA 58.980 40.000 0.00 0.00 0.00 2.90
479 519 6.538945 AGAGAGAGAGAGGAAATTTGGTAC 57.461 41.667 0.00 0.00 0.00 3.34
480 520 7.560796 AAAGAGAGAGAGAGGAAATTTGGTA 57.439 36.000 0.00 0.00 0.00 3.25
481 521 6.446909 AAAGAGAGAGAGAGGAAATTTGGT 57.553 37.500 0.00 0.00 0.00 3.67
528 568 2.755836 TTTGACGAAAAGCTGTCAGC 57.244 45.000 17.48 17.48 45.08 4.26
553 593 5.106157 CCCAACATATCGTGCTCTTCTTTTT 60.106 40.000 0.00 0.00 0.00 1.94
554 594 4.396166 CCCAACATATCGTGCTCTTCTTTT 59.604 41.667 0.00 0.00 0.00 2.27
555 595 3.941483 CCCAACATATCGTGCTCTTCTTT 59.059 43.478 0.00 0.00 0.00 2.52
567 607 2.099756 GAGCCAAAGTGCCCAACATATC 59.900 50.000 0.00 0.00 0.00 1.63
570 610 1.187567 GGAGCCAAAGTGCCCAACAT 61.188 55.000 0.00 0.00 0.00 2.71
571 611 1.832167 GGAGCCAAAGTGCCCAACA 60.832 57.895 0.00 0.00 0.00 3.33
580 620 1.452108 GATGGGGACGGAGCCAAAG 60.452 63.158 0.00 0.00 0.00 2.77
631 672 2.281761 AGCTTGCTTGTGGGTCGG 60.282 61.111 0.00 0.00 0.00 4.79
659 700 8.122952 CCAAACTGGCTAATCTTTACGAATTAG 58.877 37.037 0.00 0.00 0.00 1.73
660 701 7.981142 CCAAACTGGCTAATCTTTACGAATTA 58.019 34.615 0.00 0.00 0.00 1.40
661 702 6.852664 CCAAACTGGCTAATCTTTACGAATT 58.147 36.000 0.00 0.00 0.00 2.17
724 765 3.508840 GGCAAATCAGGGGCGTCG 61.509 66.667 0.00 0.00 0.00 5.12
728 769 3.714487 TAGCCGGCAAATCAGGGGC 62.714 63.158 31.54 0.00 44.07 5.80
841 922 2.997315 AGGCAGCTCGGCAGTGTA 60.997 61.111 11.23 0.00 44.47 2.90
853 934 3.379445 CAGCAAAGGGGCAGGCAG 61.379 66.667 0.00 0.00 35.83 4.85
854 935 3.900862 TCAGCAAAGGGGCAGGCA 61.901 61.111 0.00 0.00 35.83 4.75
855 936 3.376918 GTCAGCAAAGGGGCAGGC 61.377 66.667 0.00 0.00 35.83 4.85
856 937 2.677875 GGTCAGCAAAGGGGCAGG 60.678 66.667 0.00 0.00 35.83 4.85
883 964 2.985847 GGTGCCAAGGAGTGTGCC 60.986 66.667 0.00 0.00 0.00 5.01
886 975 0.037303 CAGATGGTGCCAAGGAGTGT 59.963 55.000 0.00 0.00 0.00 3.55
888 977 0.326264 GACAGATGGTGCCAAGGAGT 59.674 55.000 0.00 0.00 0.00 3.85
900 989 6.425114 CGAGGTGAAATTTATAGGGACAGATG 59.575 42.308 0.00 0.00 0.00 2.90
955 1045 3.651904 TGGGTAGCTACTAGGTAGGAGAG 59.348 52.174 22.74 0.00 36.31 3.20
958 1048 4.506271 CGATTGGGTAGCTACTAGGTAGGA 60.506 50.000 22.74 2.48 36.71 2.94
959 1049 3.757493 CGATTGGGTAGCTACTAGGTAGG 59.243 52.174 22.74 4.66 36.71 3.18
968 1058 4.081365 TGTCAAATGTCGATTGGGTAGCTA 60.081 41.667 0.00 0.00 0.00 3.32
969 1059 3.270877 GTCAAATGTCGATTGGGTAGCT 58.729 45.455 0.00 0.00 0.00 3.32
970 1060 3.006940 TGTCAAATGTCGATTGGGTAGC 58.993 45.455 0.00 0.00 0.00 3.58
971 1061 4.093408 CACTGTCAAATGTCGATTGGGTAG 59.907 45.833 0.00 0.00 0.00 3.18
972 1062 4.000325 CACTGTCAAATGTCGATTGGGTA 59.000 43.478 0.00 0.00 0.00 3.69
973 1063 2.813754 CACTGTCAAATGTCGATTGGGT 59.186 45.455 0.00 0.00 0.00 4.51
974 1064 2.162208 CCACTGTCAAATGTCGATTGGG 59.838 50.000 0.00 0.00 0.00 4.12
977 1067 3.997021 GAGACCACTGTCAAATGTCGATT 59.003 43.478 0.00 0.00 44.33 3.34
979 1069 2.364002 TGAGACCACTGTCAAATGTCGA 59.636 45.455 0.00 0.00 44.33 4.20
980 1070 2.754472 TGAGACCACTGTCAAATGTCG 58.246 47.619 0.00 0.00 44.33 4.35
982 1072 3.415212 CCATGAGACCACTGTCAAATGT 58.585 45.455 0.00 0.00 44.33 2.71
983 1073 2.163010 GCCATGAGACCACTGTCAAATG 59.837 50.000 0.00 0.00 44.33 2.32
985 1075 1.877680 CGCCATGAGACCACTGTCAAA 60.878 52.381 0.00 0.00 44.33 2.69
1251 1363 2.947890 GAGCGCACGCCTGCATATC 61.948 63.158 11.47 0.00 44.50 1.63
1252 1364 2.969238 GAGCGCACGCCTGCATAT 60.969 61.111 11.47 0.00 44.50 1.78
1272 1384 2.162208 TCGCTGTCATTTTCAATGGAGC 59.838 45.455 9.61 9.61 0.00 4.70
1273 1385 4.142534 ACATCGCTGTCATTTTCAATGGAG 60.143 41.667 0.00 0.00 0.00 3.86
1274 1386 3.758023 ACATCGCTGTCATTTTCAATGGA 59.242 39.130 0.00 0.00 0.00 3.41
1275 1387 4.100707 ACATCGCTGTCATTTTCAATGG 57.899 40.909 0.00 0.00 0.00 3.16
1276 1388 6.968335 TCAATACATCGCTGTCATTTTCAATG 59.032 34.615 0.00 0.00 36.79 2.82
1277 1389 7.087409 TCAATACATCGCTGTCATTTTCAAT 57.913 32.000 0.00 0.00 36.79 2.57
1287 1399 0.583438 GCGCATCAATACATCGCTGT 59.417 50.000 0.30 0.00 42.19 4.40
1291 1403 0.581529 AACCGCGCATCAATACATCG 59.418 50.000 8.75 0.00 0.00 3.84
1302 1414 4.539083 ACCACAGTCAACCGCGCA 62.539 61.111 8.75 0.00 0.00 6.09
1343 1455 2.433318 GTCGAGTCCAGCAGCACC 60.433 66.667 0.00 0.00 0.00 5.01
1389 1501 2.347490 GAGGCTCTTGTTGGGCGA 59.653 61.111 7.40 0.00 0.00 5.54
1406 1518 1.522569 GATGACCTCGAACCCCCTG 59.477 63.158 0.00 0.00 0.00 4.45
1499 1611 4.039357 AGGACGACGCTGTCACGG 62.039 66.667 9.51 0.00 40.72 4.94
1502 1614 1.601477 TACCAGGACGACGCTGTCA 60.601 57.895 9.51 0.00 40.72 3.58
1547 1659 1.786937 CAGTGTCCTCATAGGCTCCT 58.213 55.000 0.00 0.00 34.61 3.69
1548 1660 0.105778 GCAGTGTCCTCATAGGCTCC 59.894 60.000 0.00 0.00 34.61 4.70
1553 1665 4.318332 TGAACAAAGCAGTGTCCTCATAG 58.682 43.478 0.00 0.00 0.00 2.23
1554 1666 4.318332 CTGAACAAAGCAGTGTCCTCATA 58.682 43.478 0.00 0.00 0.00 2.15
1555 1667 3.144506 CTGAACAAAGCAGTGTCCTCAT 58.855 45.455 0.00 0.00 0.00 2.90
1556 1668 2.564771 CTGAACAAAGCAGTGTCCTCA 58.435 47.619 0.00 0.00 0.00 3.86
1557 1669 1.265365 GCTGAACAAAGCAGTGTCCTC 59.735 52.381 0.00 0.00 43.01 3.71
1558 1670 1.133976 AGCTGAACAAAGCAGTGTCCT 60.134 47.619 0.00 0.00 46.08 3.85
1559 1671 1.265365 GAGCTGAACAAAGCAGTGTCC 59.735 52.381 0.00 0.00 46.08 4.02
1560 1672 2.216898 AGAGCTGAACAAAGCAGTGTC 58.783 47.619 0.00 0.00 46.08 3.67
1561 1673 2.338577 AGAGCTGAACAAAGCAGTGT 57.661 45.000 0.00 0.00 46.08 3.55
1562 1674 2.857489 GCAAGAGCTGAACAAAGCAGTG 60.857 50.000 0.00 0.00 46.08 3.66
1563 1675 1.336125 GCAAGAGCTGAACAAAGCAGT 59.664 47.619 0.00 0.00 46.08 4.40
1564 1676 2.047679 GCAAGAGCTGAACAAAGCAG 57.952 50.000 0.00 0.00 46.08 4.24
1708 1848 1.815408 GCAAAGGCTTCAGTGAGGTGA 60.815 52.381 0.00 0.00 36.96 4.02
1717 1857 2.037511 CCCATTCTTTGCAAAGGCTTCA 59.962 45.455 33.01 15.22 41.91 3.02
1747 1887 0.687354 AAAGCGTGACCATGTCCTCT 59.313 50.000 0.00 0.00 0.00 3.69
1783 1938 1.760086 TTGGGCTGTGGGTGTTTGG 60.760 57.895 0.00 0.00 0.00 3.28
1784 1939 1.042559 AGTTGGGCTGTGGGTGTTTG 61.043 55.000 0.00 0.00 0.00 2.93
1785 1940 0.325203 AAGTTGGGCTGTGGGTGTTT 60.325 50.000 0.00 0.00 0.00 2.83
1786 1941 0.553819 TAAGTTGGGCTGTGGGTGTT 59.446 50.000 0.00 0.00 0.00 3.32
1787 1942 0.179001 GTAAGTTGGGCTGTGGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
1788 1943 0.179004 TGTAAGTTGGGCTGTGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
1789 1944 0.777446 ATGTAAGTTGGGCTGTGGGT 59.223 50.000 0.00 0.00 0.00 4.51
1790 1945 1.463674 GATGTAAGTTGGGCTGTGGG 58.536 55.000 0.00 0.00 0.00 4.61
1791 1946 1.086696 CGATGTAAGTTGGGCTGTGG 58.913 55.000 0.00 0.00 0.00 4.17
1792 1947 1.732259 GTCGATGTAAGTTGGGCTGTG 59.268 52.381 0.00 0.00 0.00 3.66
1793 1948 1.346395 TGTCGATGTAAGTTGGGCTGT 59.654 47.619 0.00 0.00 0.00 4.40
1794 1949 2.002586 CTGTCGATGTAAGTTGGGCTG 58.997 52.381 0.00 0.00 0.00 4.85
1852 2008 6.555315 GCCTGAACGTATTCAAATGAGAAAT 58.445 36.000 0.00 0.00 44.28 2.17
1864 2020 2.433491 TGCGCGCCTGAACGTATT 60.433 55.556 30.77 0.00 34.88 1.89
2284 2440 4.092383 GTGACGTGTAGTGAAACAAGTGTT 59.908 41.667 0.00 0.00 41.26 3.32
2294 2479 5.163652 CCAGATTATGAGTGACGTGTAGTGA 60.164 44.000 0.00 0.00 0.00 3.41
2299 2484 3.764434 ACTCCAGATTATGAGTGACGTGT 59.236 43.478 0.00 0.00 40.23 4.49
2300 2485 4.377839 ACTCCAGATTATGAGTGACGTG 57.622 45.455 0.00 0.00 40.23 4.49
2310 2495 5.765182 CGGCCAAAAAGATACTCCAGATTAT 59.235 40.000 2.24 0.00 0.00 1.28
2311 2496 5.123227 CGGCCAAAAAGATACTCCAGATTA 58.877 41.667 2.24 0.00 0.00 1.75
2318 2503 1.751437 AGCCGGCCAAAAAGATACTC 58.249 50.000 26.15 0.00 0.00 2.59
2363 2549 1.144969 GCGTGTCCGAAACTCAATCA 58.855 50.000 0.00 0.00 35.63 2.57
2364 2550 1.136336 GTGCGTGTCCGAAACTCAATC 60.136 52.381 0.00 0.00 35.63 2.67
2463 2658 1.280206 CTTTGCCAAAAGCTCGCAGC 61.280 55.000 0.00 0.47 44.23 5.25
2486 2681 3.214328 CCCGAATAACTAAAGCAGGCAT 58.786 45.455 0.00 0.00 0.00 4.40
2487 2682 2.026636 ACCCGAATAACTAAAGCAGGCA 60.027 45.455 0.00 0.00 0.00 4.75
2572 2771 3.118592 GCACATGTTCTTAGGTAGGCTCT 60.119 47.826 0.00 0.00 0.00 4.09
2574 2773 2.840651 AGCACATGTTCTTAGGTAGGCT 59.159 45.455 0.00 0.00 0.00 4.58
2585 2784 6.509418 TTTAATCAGGGTAAGCACATGTTC 57.491 37.500 0.00 0.00 0.00 3.18
2587 2786 6.909550 TTTTTAATCAGGGTAAGCACATGT 57.090 33.333 0.00 0.00 0.00 3.21
2607 2806 7.116736 TGGTTGTTAGGTCTCTTCTTCTTTTT 58.883 34.615 0.00 0.00 0.00 1.94
2612 2811 4.570930 CCTGGTTGTTAGGTCTCTTCTTC 58.429 47.826 0.00 0.00 0.00 2.87
2620 2819 2.858745 TCTTTGCCTGGTTGTTAGGTC 58.141 47.619 0.00 0.00 37.64 3.85
2631 2830 1.542492 ACCTGCTGAATCTTTGCCTG 58.458 50.000 0.00 0.00 0.00 4.85
2645 2848 7.806487 GGTTCAGTAAACACTAATTAAACCTGC 59.194 37.037 0.00 0.00 39.81 4.85
2652 2855 6.757237 TGTCCGGTTCAGTAAACACTAATTA 58.243 36.000 0.00 0.00 39.81 1.40
2653 2856 5.613329 TGTCCGGTTCAGTAAACACTAATT 58.387 37.500 0.00 0.00 39.81 1.40
2654 2857 5.217978 TGTCCGGTTCAGTAAACACTAAT 57.782 39.130 0.00 0.00 39.81 1.73
2655 2858 4.669206 TGTCCGGTTCAGTAAACACTAA 57.331 40.909 0.00 0.00 39.81 2.24
2664 2867 0.180406 ACTTGCTTGTCCGGTTCAGT 59.820 50.000 0.00 0.00 0.00 3.41
2729 2937 4.023107 GGGCTGTTGTTAGGTTTCTTCTTC 60.023 45.833 0.00 0.00 0.00 2.87
2732 2940 3.253432 CAGGGCTGTTGTTAGGTTTCTTC 59.747 47.826 0.00 0.00 0.00 2.87
2733 2941 3.117663 TCAGGGCTGTTGTTAGGTTTCTT 60.118 43.478 0.00 0.00 0.00 2.52
2734 2942 2.441750 TCAGGGCTGTTGTTAGGTTTCT 59.558 45.455 0.00 0.00 0.00 2.52
2735 2943 2.858745 TCAGGGCTGTTGTTAGGTTTC 58.141 47.619 0.00 0.00 0.00 2.78
2736 2944 3.306472 TTCAGGGCTGTTGTTAGGTTT 57.694 42.857 0.00 0.00 0.00 3.27
2737 2945 3.306472 TTTCAGGGCTGTTGTTAGGTT 57.694 42.857 0.00 0.00 0.00 3.50
2738 2946 3.306472 TTTTCAGGGCTGTTGTTAGGT 57.694 42.857 0.00 0.00 0.00 3.08
2739 2947 3.888930 TCTTTTTCAGGGCTGTTGTTAGG 59.111 43.478 0.00 0.00 0.00 2.69
2740 2948 5.712152 ATCTTTTTCAGGGCTGTTGTTAG 57.288 39.130 0.00 0.00 0.00 2.34
2741 2949 5.596361 TGAATCTTTTTCAGGGCTGTTGTTA 59.404 36.000 0.00 0.00 0.00 2.41
2742 2950 4.405358 TGAATCTTTTTCAGGGCTGTTGTT 59.595 37.500 0.00 0.00 0.00 2.83
2743 2951 3.960102 TGAATCTTTTTCAGGGCTGTTGT 59.040 39.130 0.00 0.00 0.00 3.32
2744 2952 4.589216 TGAATCTTTTTCAGGGCTGTTG 57.411 40.909 0.00 0.00 0.00 3.33
2745 2953 4.834496 TGATGAATCTTTTTCAGGGCTGTT 59.166 37.500 0.00 0.00 0.00 3.16
2746 2954 4.410099 TGATGAATCTTTTTCAGGGCTGT 58.590 39.130 0.00 0.00 0.00 4.40
2747 2955 4.677250 GCTGATGAATCTTTTTCAGGGCTG 60.677 45.833 0.00 0.00 36.85 4.85
2748 2956 3.446516 GCTGATGAATCTTTTTCAGGGCT 59.553 43.478 0.00 0.00 36.85 5.19
2749 2957 3.446516 AGCTGATGAATCTTTTTCAGGGC 59.553 43.478 0.00 0.00 36.85 5.19
2750 2958 5.184479 TGAAGCTGATGAATCTTTTTCAGGG 59.816 40.000 0.00 0.00 36.85 4.45
2751 2959 6.072064 ACTGAAGCTGATGAATCTTTTTCAGG 60.072 38.462 21.39 12.11 39.43 3.86
2752 2960 6.802348 CACTGAAGCTGATGAATCTTTTTCAG 59.198 38.462 18.72 18.72 40.07 3.02
2753 2961 6.263842 ACACTGAAGCTGATGAATCTTTTTCA 59.736 34.615 0.00 0.00 0.00 2.69
2754 2962 6.675987 ACACTGAAGCTGATGAATCTTTTTC 58.324 36.000 0.00 0.00 0.00 2.29
2755 2963 6.645790 ACACTGAAGCTGATGAATCTTTTT 57.354 33.333 0.00 0.00 0.00 1.94
2756 2964 6.645790 AACACTGAAGCTGATGAATCTTTT 57.354 33.333 0.00 0.00 0.00 2.27
2757 2965 6.444633 CAAACACTGAAGCTGATGAATCTTT 58.555 36.000 0.00 0.00 0.00 2.52
2758 2966 5.564259 GCAAACACTGAAGCTGATGAATCTT 60.564 40.000 0.00 0.00 0.00 2.40
2759 2967 4.082895 GCAAACACTGAAGCTGATGAATCT 60.083 41.667 0.00 0.00 0.00 2.40
2760 2968 4.082895 AGCAAACACTGAAGCTGATGAATC 60.083 41.667 0.00 0.00 35.72 2.52
2761 2969 3.825014 AGCAAACACTGAAGCTGATGAAT 59.175 39.130 0.00 0.00 35.72 2.57
2762 2970 3.216800 AGCAAACACTGAAGCTGATGAA 58.783 40.909 0.00 0.00 35.72 2.57
2763 2971 2.854963 AGCAAACACTGAAGCTGATGA 58.145 42.857 0.00 0.00 35.72 2.92
2772 2980 0.179234 TCCGGTTCAGCAAACACTGA 59.821 50.000 0.00 0.00 44.84 3.41
2773 2981 0.307760 GTCCGGTTCAGCAAACACTG 59.692 55.000 0.00 0.00 39.81 3.66
2774 2982 0.107410 TGTCCGGTTCAGCAAACACT 60.107 50.000 0.00 0.00 39.81 3.55
2775 2983 0.736053 TTGTCCGGTTCAGCAAACAC 59.264 50.000 0.00 0.00 39.81 3.32
2776 2984 1.021202 CTTGTCCGGTTCAGCAAACA 58.979 50.000 0.00 0.00 39.81 2.83
2777 2985 0.317854 GCTTGTCCGGTTCAGCAAAC 60.318 55.000 14.20 0.00 37.12 2.93
2778 2986 0.749818 TGCTTGTCCGGTTCAGCAAA 60.750 50.000 17.98 0.95 0.00 3.68
2779 2987 0.749818 TTGCTTGTCCGGTTCAGCAA 60.750 50.000 23.93 23.93 39.51 3.91
2780 2988 1.153066 TTGCTTGTCCGGTTCAGCA 60.153 52.632 16.83 16.83 0.00 4.41
2781 2989 1.166531 ACTTGCTTGTCCGGTTCAGC 61.167 55.000 0.00 7.98 0.00 4.26
2782 2990 1.002468 CAACTTGCTTGTCCGGTTCAG 60.002 52.381 0.00 0.00 0.00 3.02
2783 2991 1.021202 CAACTTGCTTGTCCGGTTCA 58.979 50.000 0.00 0.00 0.00 3.18
2784 2992 0.310854 CCAACTTGCTTGTCCGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
2785 2993 0.395173 ACCAACTTGCTTGTCCGGTT 60.395 50.000 0.00 0.00 0.00 4.44
2786 2994 0.470766 TACCAACTTGCTTGTCCGGT 59.529 50.000 0.00 0.00 32.61 5.28
2787 2995 1.535462 CTTACCAACTTGCTTGTCCGG 59.465 52.381 0.00 0.00 0.00 5.14
2788 2996 2.489971 TCTTACCAACTTGCTTGTCCG 58.510 47.619 0.00 0.00 0.00 4.79
2789 2997 3.630312 TGTTCTTACCAACTTGCTTGTCC 59.370 43.478 0.00 0.00 0.00 4.02
2790 2998 4.893424 TGTTCTTACCAACTTGCTTGTC 57.107 40.909 0.00 0.00 0.00 3.18
2791 2999 5.852282 ATTGTTCTTACCAACTTGCTTGT 57.148 34.783 0.00 0.00 0.00 3.16
2792 3000 6.507023 AGAATTGTTCTTACCAACTTGCTTG 58.493 36.000 0.00 0.00 36.36 4.01
2793 3001 6.715347 AGAATTGTTCTTACCAACTTGCTT 57.285 33.333 0.00 0.00 36.36 3.91
2794 3002 6.998673 ACTAGAATTGTTCTTACCAACTTGCT 59.001 34.615 0.00 0.00 41.14 3.91
2795 3003 7.203255 ACTAGAATTGTTCTTACCAACTTGC 57.797 36.000 0.00 0.00 41.14 4.01
2796 3004 8.009974 CGAACTAGAATTGTTCTTACCAACTTG 58.990 37.037 0.00 0.00 40.95 3.16
2797 3005 7.929785 TCGAACTAGAATTGTTCTTACCAACTT 59.070 33.333 0.00 0.00 40.95 2.66
2798 3006 7.439381 TCGAACTAGAATTGTTCTTACCAACT 58.561 34.615 0.00 0.00 40.95 3.16
2799 3007 7.384387 ACTCGAACTAGAATTGTTCTTACCAAC 59.616 37.037 0.00 0.00 40.95 3.77
2800 3008 7.439381 ACTCGAACTAGAATTGTTCTTACCAA 58.561 34.615 0.00 0.00 40.95 3.67
2801 3009 6.989659 ACTCGAACTAGAATTGTTCTTACCA 58.010 36.000 0.00 0.00 40.95 3.25
2802 3010 7.886405 AACTCGAACTAGAATTGTTCTTACC 57.114 36.000 0.00 0.00 40.95 2.85
2805 3013 9.110502 AGAAAAACTCGAACTAGAATTGTTCTT 57.889 29.630 0.00 0.00 40.95 2.52
2806 3014 8.664211 AGAAAAACTCGAACTAGAATTGTTCT 57.336 30.769 0.00 0.00 40.95 3.01
2807 3015 8.010540 GGAGAAAAACTCGAACTAGAATTGTTC 58.989 37.037 0.00 0.00 45.76 3.18
2808 3016 7.715686 AGGAGAAAAACTCGAACTAGAATTGTT 59.284 33.333 0.00 0.00 45.76 2.83
2809 3017 7.217906 AGGAGAAAAACTCGAACTAGAATTGT 58.782 34.615 0.00 0.00 45.76 2.71
2810 3018 7.659652 AGGAGAAAAACTCGAACTAGAATTG 57.340 36.000 0.00 0.00 45.76 2.32
2811 3019 7.931948 TCAAGGAGAAAAACTCGAACTAGAATT 59.068 33.333 0.00 0.00 45.76 2.17
2812 3020 7.442656 TCAAGGAGAAAAACTCGAACTAGAAT 58.557 34.615 0.00 0.00 45.76 2.40
2813 3021 6.812998 TCAAGGAGAAAAACTCGAACTAGAA 58.187 36.000 0.00 0.00 45.76 2.10
2821 3029 6.798959 CAGCTTTAATCAAGGAGAAAAACTCG 59.201 38.462 0.00 0.00 45.76 4.18
2828 3036 6.403866 TTTTGCAGCTTTAATCAAGGAGAA 57.596 33.333 0.00 0.00 32.37 2.87
2832 3040 5.481105 TCCATTTTGCAGCTTTAATCAAGG 58.519 37.500 0.00 0.00 32.37 3.61
2836 3044 6.676213 GCCATTTCCATTTTGCAGCTTTAATC 60.676 38.462 0.00 0.00 0.00 1.75
2841 3049 2.429478 GCCATTTCCATTTTGCAGCTT 58.571 42.857 0.00 0.00 0.00 3.74
2843 3051 1.089112 GGCCATTTCCATTTTGCAGC 58.911 50.000 0.00 0.00 0.00 5.25
2844 3052 2.078392 GTGGCCATTTCCATTTTGCAG 58.922 47.619 9.72 0.00 38.57 4.41
2845 3053 1.607509 CGTGGCCATTTCCATTTTGCA 60.608 47.619 9.72 0.00 38.57 4.08
2848 3056 2.830923 TCATCGTGGCCATTTCCATTTT 59.169 40.909 9.72 0.00 38.57 1.82
2849 3057 2.455557 TCATCGTGGCCATTTCCATTT 58.544 42.857 9.72 0.00 38.57 2.32
2850 3058 2.142356 TCATCGTGGCCATTTCCATT 57.858 45.000 9.72 0.00 38.57 3.16
2851 3059 2.142356 TTCATCGTGGCCATTTCCAT 57.858 45.000 9.72 0.00 38.57 3.41
2892 3100 1.375523 CCGGCTCCGTTACAAAGCT 60.376 57.895 7.59 0.00 36.29 3.74
2893 3101 3.035576 GCCGGCTCCGTTACAAAGC 62.036 63.158 22.15 0.00 37.81 3.51
2941 3149 1.831736 TCCACCTAGCAGCTTCTTACC 59.168 52.381 0.00 0.00 0.00 2.85
2943 3151 2.435805 CCATCCACCTAGCAGCTTCTTA 59.564 50.000 0.00 0.00 0.00 2.10
2957 3165 1.303309 CGAGAATTGGCTCCATCCAC 58.697 55.000 0.00 0.00 35.50 4.02
2983 3192 9.396022 GTGGATAGTTGATAATCTTTCCTGAAA 57.604 33.333 0.00 0.00 34.49 2.69
3024 3233 5.067273 TCCTGGCAATAAGAAACGAAGAAA 58.933 37.500 0.00 0.00 0.00 2.52
3025 3234 4.647611 TCCTGGCAATAAGAAACGAAGAA 58.352 39.130 0.00 0.00 0.00 2.52
3026 3235 4.253685 CTCCTGGCAATAAGAAACGAAGA 58.746 43.478 0.00 0.00 0.00 2.87
3027 3236 3.375299 CCTCCTGGCAATAAGAAACGAAG 59.625 47.826 0.00 0.00 0.00 3.79
3028 3237 3.008594 TCCTCCTGGCAATAAGAAACGAA 59.991 43.478 0.00 0.00 0.00 3.85
3029 3238 2.569853 TCCTCCTGGCAATAAGAAACGA 59.430 45.455 0.00 0.00 0.00 3.85
3030 3239 2.939103 CTCCTCCTGGCAATAAGAAACG 59.061 50.000 0.00 0.00 0.00 3.60
3031 3240 3.942115 GTCTCCTCCTGGCAATAAGAAAC 59.058 47.826 0.00 0.00 0.00 2.78
3079 3288 2.300152 TGGACTTGCTTAGTGAGGACTG 59.700 50.000 0.00 0.00 37.17 3.51
3088 3297 5.426504 AGAAGACATCATGGACTTGCTTAG 58.573 41.667 4.45 0.00 0.00 2.18
3179 3443 3.221771 TGAATTGGATCCGCCTAATTGG 58.778 45.455 11.44 0.00 37.63 3.16
3189 3453 5.567430 TCATGGATGAGATGAATTGGATCC 58.433 41.667 4.20 4.20 32.11 3.36
3203 3467 6.189133 TGGATCAAAGTGATTTCATGGATGA 58.811 36.000 0.00 0.00 37.20 2.92
3205 3469 6.405065 CGTTGGATCAAAGTGATTTCATGGAT 60.405 38.462 0.00 0.00 37.20 3.41
3234 3498 4.070009 TCAGTGAACTCTAGAGCAACGTA 58.930 43.478 19.97 6.50 0.00 3.57
3253 3517 3.379372 CCATGGTGGCTCTAAATGTTCAG 59.621 47.826 2.57 0.00 0.00 3.02
3254 3518 3.245229 ACCATGGTGGCTCTAAATGTTCA 60.245 43.478 18.99 0.00 42.67 3.18
3255 3519 3.356290 ACCATGGTGGCTCTAAATGTTC 58.644 45.455 18.99 0.00 42.67 3.18
3256 3520 3.456380 ACCATGGTGGCTCTAAATGTT 57.544 42.857 18.99 0.00 42.67 2.71
3257 3521 4.584638 TTACCATGGTGGCTCTAAATGT 57.415 40.909 28.17 0.00 42.67 2.71
3258 3522 5.894807 CTTTTACCATGGTGGCTCTAAATG 58.105 41.667 28.17 15.51 42.67 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.