Multiple sequence alignment - TraesCS4B01G347100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G347100 chr4B 100.000 4284 0 0 1 4284 640825730 640821447 0.000000e+00 7912.0
1 TraesCS4B01G347100 chr4B 97.598 333 6 1 1 331 89004167 89003835 1.730000e-158 569.0
2 TraesCS4B01G347100 chr4D 92.507 3163 104 42 434 3525 498687412 498684312 0.000000e+00 4405.0
3 TraesCS4B01G347100 chr4D 91.246 594 47 3 3537 4126 25441700 25442292 0.000000e+00 804.0
4 TraesCS4B01G347100 chr4D 96.133 181 7 0 4104 4284 25442240 25442420 3.240000e-76 296.0
5 TraesCS4B01G347100 chr5A 90.918 3160 133 61 443 3498 679377065 679373956 0.000000e+00 4104.0
6 TraesCS4B01G347100 chr5A 96.658 748 25 0 3537 4284 527394094 527393347 0.000000e+00 1243.0
7 TraesCS4B01G347100 chr1B 96.497 628 21 1 3529 4156 506628974 506628348 0.000000e+00 1037.0
8 TraesCS4B01G347100 chr1B 92.785 596 38 5 3535 4126 44358825 44359419 0.000000e+00 857.0
9 TraesCS4B01G347100 chr1B 97.598 333 8 0 1 333 25818473 25818805 4.810000e-159 571.0
10 TraesCS4B01G347100 chr1B 95.821 335 12 1 1 333 61991569 61991903 1.360000e-149 540.0
11 TraesCS4B01G347100 chr1B 89.247 372 27 12 3529 3896 116118612 116118974 1.820000e-123 453.0
12 TraesCS4B01G347100 chr1B 94.444 270 15 0 3857 4126 116118965 116119234 2.380000e-112 416.0
13 TraesCS4B01G347100 chr1B 98.558 208 3 0 4077 4284 506628397 506628190 6.770000e-98 368.0
14 TraesCS4B01G347100 chr1B 97.238 181 4 1 4104 4284 44359367 44359546 5.380000e-79 305.0
15 TraesCS4B01G347100 chr1B 95.580 181 8 0 4104 4284 116119182 116119362 1.510000e-74 291.0
16 TraesCS4B01G347100 chr1B 85.333 75 11 0 1718 1792 520814943 520814869 1.280000e-10 78.7
17 TraesCS4B01G347100 chr6B 92.140 598 29 5 3533 4126 239302691 239302108 0.000000e+00 828.0
18 TraesCS4B01G347100 chr6B 97.281 331 9 0 1 331 670895748 670895418 2.890000e-156 562.0
19 TraesCS4B01G347100 chrUn 90.388 541 46 3 3546 4082 7159579 7159041 0.000000e+00 706.0
20 TraesCS4B01G347100 chr4A 88.391 603 34 9 3528 4126 77086610 77087180 0.000000e+00 693.0
21 TraesCS4B01G347100 chr4A 97.006 334 10 0 1 334 693426719 693427052 2.890000e-156 562.0
22 TraesCS4B01G347100 chr4A 95.028 181 9 0 4104 4284 77087128 77087308 7.010000e-73 285.0
23 TraesCS4B01G347100 chr2B 96.812 345 7 3 1 341 625252824 625253168 1.340000e-159 573.0
24 TraesCS4B01G347100 chr2B 95.252 337 14 1 1 335 752930579 752930243 2.270000e-147 532.0
25 TraesCS4B01G347100 chr2B 95.252 337 10 3 1 334 788662647 788662314 2.930000e-146 529.0
26 TraesCS4B01G347100 chr2B 97.527 283 6 1 4003 4284 27905509 27905227 2.320000e-132 483.0
27 TraesCS4B01G347100 chr7B 95.796 333 14 0 1 333 698922792 698922460 4.870000e-149 538.0
28 TraesCS4B01G347100 chr2D 88.736 435 38 5 3531 3955 117182805 117182372 4.910000e-144 521.0
29 TraesCS4B01G347100 chr2D 96.648 179 4 2 4107 4284 19011405 19011582 3.240000e-76 296.0
30 TraesCS4B01G347100 chr7D 90.541 370 28 6 3531 3896 383285019 383285385 2.320000e-132 483.0
31 TraesCS4B01G347100 chr7D 96.296 270 10 0 3857 4126 383285376 383285645 1.090000e-120 444.0
32 TraesCS4B01G347100 chr7D 97.238 181 5 0 4104 4284 383285593 383285773 1.500000e-79 307.0
33 TraesCS4B01G347100 chr1D 86.667 75 10 0 1718 1792 387433565 387433491 2.750000e-12 84.2
34 TraesCS4B01G347100 chr1A 86.667 75 10 0 1718 1792 487102782 487102708 2.750000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G347100 chr4B 640821447 640825730 4283 True 7912.000000 7912 100.000000 1 4284 1 chr4B.!!$R2 4283
1 TraesCS4B01G347100 chr4D 498684312 498687412 3100 True 4405.000000 4405 92.507000 434 3525 1 chr4D.!!$R1 3091
2 TraesCS4B01G347100 chr4D 25441700 25442420 720 False 550.000000 804 93.689500 3537 4284 2 chr4D.!!$F1 747
3 TraesCS4B01G347100 chr5A 679373956 679377065 3109 True 4104.000000 4104 90.918000 443 3498 1 chr5A.!!$R2 3055
4 TraesCS4B01G347100 chr5A 527393347 527394094 747 True 1243.000000 1243 96.658000 3537 4284 1 chr5A.!!$R1 747
5 TraesCS4B01G347100 chr1B 506628190 506628974 784 True 702.500000 1037 97.527500 3529 4284 2 chr1B.!!$R2 755
6 TraesCS4B01G347100 chr1B 44358825 44359546 721 False 581.000000 857 95.011500 3535 4284 2 chr1B.!!$F3 749
7 TraesCS4B01G347100 chr1B 116118612 116119362 750 False 386.666667 453 93.090333 3529 4284 3 chr1B.!!$F4 755
8 TraesCS4B01G347100 chr6B 239302108 239302691 583 True 828.000000 828 92.140000 3533 4126 1 chr6B.!!$R1 593
9 TraesCS4B01G347100 chrUn 7159041 7159579 538 True 706.000000 706 90.388000 3546 4082 1 chrUn.!!$R1 536
10 TraesCS4B01G347100 chr4A 77086610 77087308 698 False 489.000000 693 91.709500 3528 4284 2 chr4A.!!$F2 756
11 TraesCS4B01G347100 chr7D 383285019 383285773 754 False 411.333333 483 94.691667 3531 4284 3 chr7D.!!$F1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 325 0.038067 TTTAGCGCGGCTGTTGTAGA 60.038 50.0 8.83 0.0 40.10 2.59 F
429 430 0.040646 TAGGAACGGAAGGAGCAGGA 59.959 55.0 0.00 0.0 0.00 3.86 F
432 433 0.174617 GAACGGAAGGAGCAGGAGAG 59.825 60.0 0.00 0.0 0.00 3.20 F
880 918 0.248843 AAGAAGGAAGAGGAGCAGCG 59.751 55.0 0.00 0.0 0.00 5.18 F
902 940 0.252193 AGAGGAGAAGGAGCTGCTGT 60.252 55.0 9.14 0.0 36.65 4.40 F
904 942 0.324285 AGGAGAAGGAGCTGCTGTTG 59.676 55.0 9.14 0.0 35.09 3.33 F
1407 1474 0.875059 CTGTTGCCGGTTCTTCTTCC 59.125 55.0 1.90 0.0 0.00 3.46 F
1899 1975 0.906282 GAACCCTCCCCGGTCTTACA 60.906 60.0 0.00 0.0 33.98 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1238 0.622665 AGGGAAGGGAAGCTGTCATG 59.377 55.0 0.00 0.0 0.00 3.07 R
2381 2458 0.394938 TGGAGCAGGAAAGCAACGTA 59.605 50.0 0.00 0.0 36.85 3.57 R
2382 2459 0.886490 CTGGAGCAGGAAAGCAACGT 60.886 55.0 0.00 0.0 36.85 3.99 R
2539 2622 0.036765 TCTAAGGGCGTGCGTTCAAT 60.037 50.0 0.00 0.0 0.00 2.57 R
2728 2838 0.596341 CCACACACGATGACACGACA 60.596 55.0 0.00 0.0 37.03 4.35 R
2729 2839 0.596600 ACCACACACGATGACACGAC 60.597 55.0 0.00 0.0 37.03 4.34 R
2730 2840 0.953003 TACCACACACGATGACACGA 59.047 50.0 0.00 0.0 37.03 4.35 R
3500 3660 0.388659 CAGGCTAGCAGCAGTAGAGG 59.611 60.0 18.24 0.0 44.75 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.788960 GTCTTTCATGTCTTGAACTTTTAGTTT 57.211 29.630 0.80 0.00 43.99 2.66
27 28 9.787532 TCTTTCATGTCTTGAACTTTTAGTTTG 57.212 29.630 0.80 0.00 43.99 2.93
28 29 7.985634 TTCATGTCTTGAACTTTTAGTTTGC 57.014 32.000 0.00 0.00 38.80 3.68
29 30 7.094508 TCATGTCTTGAACTTTTAGTTTGCA 57.905 32.000 0.00 0.00 38.80 4.08
30 31 7.715657 TCATGTCTTGAACTTTTAGTTTGCAT 58.284 30.769 0.00 0.00 38.80 3.96
31 32 8.196771 TCATGTCTTGAACTTTTAGTTTGCATT 58.803 29.630 0.00 0.00 38.80 3.56
32 33 8.819974 CATGTCTTGAACTTTTAGTTTGCATTT 58.180 29.630 0.00 0.00 38.80 2.32
33 34 8.183830 TGTCTTGAACTTTTAGTTTGCATTTG 57.816 30.769 0.00 0.00 38.80 2.32
34 35 8.031864 TGTCTTGAACTTTTAGTTTGCATTTGA 58.968 29.630 0.00 0.00 38.80 2.69
35 36 8.868916 GTCTTGAACTTTTAGTTTGCATTTGAA 58.131 29.630 0.00 0.00 38.80 2.69
36 37 8.868916 TCTTGAACTTTTAGTTTGCATTTGAAC 58.131 29.630 0.00 0.00 38.80 3.18
37 38 8.770438 TTGAACTTTTAGTTTGCATTTGAACT 57.230 26.923 6.73 6.73 38.80 3.01
38 39 8.770438 TGAACTTTTAGTTTGCATTTGAACTT 57.230 26.923 6.81 0.00 38.80 2.66
39 40 8.655092 TGAACTTTTAGTTTGCATTTGAACTTG 58.345 29.630 6.81 0.06 38.80 3.16
40 41 7.538303 ACTTTTAGTTTGCATTTGAACTTGG 57.462 32.000 6.81 0.00 37.32 3.61
41 42 7.102993 ACTTTTAGTTTGCATTTGAACTTGGT 58.897 30.769 6.81 0.30 37.32 3.67
42 43 7.606073 ACTTTTAGTTTGCATTTGAACTTGGTT 59.394 29.630 6.81 0.00 37.32 3.67
43 44 6.900568 TTAGTTTGCATTTGAACTTGGTTG 57.099 33.333 6.81 0.00 37.32 3.77
44 45 4.190772 AGTTTGCATTTGAACTTGGTTGG 58.809 39.130 0.00 0.00 32.43 3.77
45 46 4.081198 AGTTTGCATTTGAACTTGGTTGGA 60.081 37.500 0.00 0.00 32.43 3.53
46 47 4.686191 TTGCATTTGAACTTGGTTGGAT 57.314 36.364 0.00 0.00 0.00 3.41
47 48 3.992643 TGCATTTGAACTTGGTTGGATG 58.007 40.909 0.00 0.00 0.00 3.51
48 49 3.640498 TGCATTTGAACTTGGTTGGATGA 59.360 39.130 0.00 0.00 0.00 2.92
49 50 4.100653 TGCATTTGAACTTGGTTGGATGAA 59.899 37.500 0.00 0.00 0.00 2.57
50 51 4.448732 GCATTTGAACTTGGTTGGATGAAC 59.551 41.667 0.00 0.00 0.00 3.18
51 52 5.739935 GCATTTGAACTTGGTTGGATGAACT 60.740 40.000 0.00 0.00 34.66 3.01
52 53 5.930837 TTTGAACTTGGTTGGATGAACTT 57.069 34.783 0.00 0.00 34.66 2.66
53 54 4.916983 TGAACTTGGTTGGATGAACTTG 57.083 40.909 0.00 0.00 34.66 3.16
54 55 4.277476 TGAACTTGGTTGGATGAACTTGT 58.723 39.130 0.00 0.00 34.66 3.16
55 56 4.097741 TGAACTTGGTTGGATGAACTTGTG 59.902 41.667 0.00 0.00 34.66 3.33
56 57 2.958355 ACTTGGTTGGATGAACTTGTGG 59.042 45.455 0.00 0.00 34.66 4.17
57 58 1.993956 TGGTTGGATGAACTTGTGGG 58.006 50.000 0.00 0.00 34.66 4.61
58 59 0.603065 GGTTGGATGAACTTGTGGGC 59.397 55.000 0.00 0.00 34.66 5.36
59 60 1.327303 GTTGGATGAACTTGTGGGCA 58.673 50.000 0.00 0.00 0.00 5.36
60 61 1.895131 GTTGGATGAACTTGTGGGCAT 59.105 47.619 0.00 0.00 0.00 4.40
61 62 1.548081 TGGATGAACTTGTGGGCATG 58.452 50.000 0.00 0.00 0.00 4.06
62 63 1.075212 TGGATGAACTTGTGGGCATGA 59.925 47.619 0.00 0.00 0.00 3.07
63 64 2.291735 TGGATGAACTTGTGGGCATGAT 60.292 45.455 0.00 0.00 0.00 2.45
64 65 2.762327 GGATGAACTTGTGGGCATGATT 59.238 45.455 0.00 0.00 0.00 2.57
65 66 3.196254 GGATGAACTTGTGGGCATGATTT 59.804 43.478 0.00 0.00 0.00 2.17
66 67 4.322953 GGATGAACTTGTGGGCATGATTTT 60.323 41.667 0.00 0.00 0.00 1.82
67 68 3.992643 TGAACTTGTGGGCATGATTTTG 58.007 40.909 0.00 0.00 0.00 2.44
68 69 3.640498 TGAACTTGTGGGCATGATTTTGA 59.360 39.130 0.00 0.00 0.00 2.69
69 70 4.283978 TGAACTTGTGGGCATGATTTTGAT 59.716 37.500 0.00 0.00 0.00 2.57
70 71 4.196626 ACTTGTGGGCATGATTTTGATG 57.803 40.909 0.00 0.00 0.00 3.07
71 72 3.833650 ACTTGTGGGCATGATTTTGATGA 59.166 39.130 0.00 0.00 0.00 2.92
72 73 4.283978 ACTTGTGGGCATGATTTTGATGAA 59.716 37.500 0.00 0.00 0.00 2.57
73 74 4.191033 TGTGGGCATGATTTTGATGAAC 57.809 40.909 0.00 0.00 0.00 3.18
74 75 3.833650 TGTGGGCATGATTTTGATGAACT 59.166 39.130 0.00 0.00 0.00 3.01
75 76 4.283978 TGTGGGCATGATTTTGATGAACTT 59.716 37.500 0.00 0.00 0.00 2.66
76 77 4.628333 GTGGGCATGATTTTGATGAACTTG 59.372 41.667 0.00 0.00 0.00 3.16
77 78 4.283978 TGGGCATGATTTTGATGAACTTGT 59.716 37.500 0.00 0.00 0.00 3.16
78 79 4.628333 GGGCATGATTTTGATGAACTTGTG 59.372 41.667 0.00 0.00 0.00 3.33
79 80 4.628333 GGCATGATTTTGATGAACTTGTGG 59.372 41.667 0.00 0.00 0.00 4.17
80 81 4.628333 GCATGATTTTGATGAACTTGTGGG 59.372 41.667 0.00 0.00 0.00 4.61
81 82 4.255833 TGATTTTGATGAACTTGTGGGC 57.744 40.909 0.00 0.00 0.00 5.36
82 83 3.640498 TGATTTTGATGAACTTGTGGGCA 59.360 39.130 0.00 0.00 0.00 5.36
83 84 4.283978 TGATTTTGATGAACTTGTGGGCAT 59.716 37.500 0.00 0.00 0.00 4.40
84 85 3.940209 TTTGATGAACTTGTGGGCATC 57.060 42.857 0.00 0.00 38.05 3.91
85 86 2.583024 TGATGAACTTGTGGGCATCA 57.417 45.000 0.00 0.00 43.29 3.07
86 87 2.874014 TGATGAACTTGTGGGCATCAA 58.126 42.857 0.00 0.00 42.76 2.57
87 88 2.557924 TGATGAACTTGTGGGCATCAAC 59.442 45.455 0.00 0.00 42.76 3.18
88 89 2.363306 TGAACTTGTGGGCATCAACT 57.637 45.000 0.00 0.00 0.00 3.16
89 90 2.665165 TGAACTTGTGGGCATCAACTT 58.335 42.857 0.00 0.00 0.00 2.66
90 91 3.030291 TGAACTTGTGGGCATCAACTTT 58.970 40.909 0.00 0.00 0.00 2.66
91 92 3.450457 TGAACTTGTGGGCATCAACTTTT 59.550 39.130 0.00 0.00 0.00 2.27
92 93 4.646945 TGAACTTGTGGGCATCAACTTTTA 59.353 37.500 0.00 0.00 0.00 1.52
93 94 5.304101 TGAACTTGTGGGCATCAACTTTTAT 59.696 36.000 0.00 0.00 0.00 1.40
94 95 5.806654 ACTTGTGGGCATCAACTTTTATT 57.193 34.783 0.00 0.00 0.00 1.40
95 96 5.783111 ACTTGTGGGCATCAACTTTTATTC 58.217 37.500 0.00 0.00 0.00 1.75
96 97 5.304101 ACTTGTGGGCATCAACTTTTATTCA 59.696 36.000 0.00 0.00 0.00 2.57
97 98 5.999205 TGTGGGCATCAACTTTTATTCAT 57.001 34.783 0.00 0.00 0.00 2.57
98 99 5.964758 TGTGGGCATCAACTTTTATTCATC 58.035 37.500 0.00 0.00 0.00 2.92
99 100 5.479724 TGTGGGCATCAACTTTTATTCATCA 59.520 36.000 0.00 0.00 0.00 3.07
100 101 6.014755 TGTGGGCATCAACTTTTATTCATCAA 60.015 34.615 0.00 0.00 0.00 2.57
101 102 6.311200 GTGGGCATCAACTTTTATTCATCAAC 59.689 38.462 0.00 0.00 0.00 3.18
102 103 6.211184 TGGGCATCAACTTTTATTCATCAACT 59.789 34.615 0.00 0.00 0.00 3.16
103 104 7.099120 GGGCATCAACTTTTATTCATCAACTT 58.901 34.615 0.00 0.00 0.00 2.66
104 105 7.063780 GGGCATCAACTTTTATTCATCAACTTG 59.936 37.037 0.00 0.00 0.00 3.16
105 106 7.599998 GGCATCAACTTTTATTCATCAACTTGT 59.400 33.333 0.00 0.00 0.00 3.16
106 107 8.981647 GCATCAACTTTTATTCATCAACTTGTT 58.018 29.630 0.00 0.00 0.00 2.83
109 110 9.868277 TCAACTTTTATTCATCAACTTGTTTGT 57.132 25.926 0.00 0.00 36.49 2.83
110 111 9.904647 CAACTTTTATTCATCAACTTGTTTGTG 57.095 29.630 0.00 0.00 36.49 3.33
111 112 9.651913 AACTTTTATTCATCAACTTGTTTGTGT 57.348 25.926 0.00 0.00 36.49 3.72
112 113 9.301153 ACTTTTATTCATCAACTTGTTTGTGTC 57.699 29.630 0.00 0.00 36.49 3.67
113 114 9.299963 CTTTTATTCATCAACTTGTTTGTGTCA 57.700 29.630 0.00 0.00 36.49 3.58
114 115 9.645059 TTTTATTCATCAACTTGTTTGTGTCAA 57.355 25.926 0.00 0.00 36.49 3.18
115 116 9.645059 TTTATTCATCAACTTGTTTGTGTCAAA 57.355 25.926 0.00 0.00 36.49 2.69
116 117 9.814899 TTATTCATCAACTTGTTTGTGTCAAAT 57.185 25.926 0.00 0.00 36.49 2.32
117 118 8.721019 ATTCATCAACTTGTTTGTGTCAAATT 57.279 26.923 0.00 0.00 36.49 1.82
118 119 8.545229 TTCATCAACTTGTTTGTGTCAAATTT 57.455 26.923 0.00 0.00 36.49 1.82
119 120 8.545229 TCATCAACTTGTTTGTGTCAAATTTT 57.455 26.923 0.00 0.00 36.49 1.82
120 121 9.645059 TCATCAACTTGTTTGTGTCAAATTTTA 57.355 25.926 0.00 0.00 36.49 1.52
121 122 9.687717 CATCAACTTGTTTGTGTCAAATTTTAC 57.312 29.630 0.00 0.00 36.49 2.01
122 123 8.818141 TCAACTTGTTTGTGTCAAATTTTACA 57.182 26.923 1.01 1.01 36.49 2.41
123 124 9.429359 TCAACTTGTTTGTGTCAAATTTTACAT 57.571 25.926 8.37 0.00 36.49 2.29
124 125 9.475505 CAACTTGTTTGTGTCAAATTTTACATG 57.524 29.630 8.37 0.00 0.00 3.21
125 126 8.770438 ACTTGTTTGTGTCAAATTTTACATGT 57.230 26.923 8.37 2.69 0.00 3.21
126 127 9.213799 ACTTGTTTGTGTCAAATTTTACATGTT 57.786 25.926 2.30 0.00 0.00 2.71
127 128 9.687717 CTTGTTTGTGTCAAATTTTACATGTTC 57.312 29.630 2.30 0.00 0.00 3.18
128 129 8.763049 TGTTTGTGTCAAATTTTACATGTTCA 57.237 26.923 2.30 0.00 0.00 3.18
129 130 9.376075 TGTTTGTGTCAAATTTTACATGTTCAT 57.624 25.926 2.30 0.00 0.00 2.57
146 147 9.218440 ACATGTTCATTTTTGTCCAAAATATCC 57.782 29.630 6.06 0.00 42.28 2.59
147 148 9.217278 CATGTTCATTTTTGTCCAAAATATCCA 57.783 29.630 6.06 1.89 42.28 3.41
148 149 9.962809 ATGTTCATTTTTGTCCAAAATATCCAT 57.037 25.926 6.06 3.74 42.28 3.41
161 162 9.656040 TCCAAAATATCCATATATGCAAAATGC 57.344 29.630 7.24 0.00 45.29 3.56
162 163 8.885722 CCAAAATATCCATATATGCAAAATGCC 58.114 33.333 7.24 0.00 44.23 4.40
163 164 8.885722 CAAAATATCCATATATGCAAAATGCCC 58.114 33.333 7.24 0.00 44.23 5.36
164 165 4.724074 ATCCATATATGCAAAATGCCCG 57.276 40.909 7.24 0.00 44.23 6.13
165 166 2.824936 TCCATATATGCAAAATGCCCGG 59.175 45.455 7.24 0.00 44.23 5.73
166 167 2.609350 CATATATGCAAAATGCCCGGC 58.391 47.619 1.04 1.04 44.23 6.13
167 168 0.595588 TATATGCAAAATGCCCGGCG 59.404 50.000 4.58 0.00 44.23 6.46
168 169 1.106351 ATATGCAAAATGCCCGGCGA 61.106 50.000 9.30 0.00 44.23 5.54
169 170 1.723608 TATGCAAAATGCCCGGCGAG 61.724 55.000 9.30 0.00 44.23 5.03
170 171 3.747976 GCAAAATGCCCGGCGAGT 61.748 61.111 9.30 0.00 37.42 4.18
171 172 2.485122 CAAAATGCCCGGCGAGTC 59.515 61.111 9.30 0.00 0.00 3.36
172 173 3.124921 AAAATGCCCGGCGAGTCG 61.125 61.111 9.30 8.54 0.00 4.18
189 190 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
190 191 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
195 196 2.100991 GCTGCATTTTAGCGCGCT 59.899 55.556 38.01 38.01 37.31 5.92
196 197 2.219562 GCTGCATTTTAGCGCGCTG 61.220 57.895 41.85 26.94 37.31 5.18
197 198 2.202466 TGCATTTTAGCGCGCTGC 60.202 55.556 41.85 34.63 46.98 5.25
231 232 3.807538 CTGCATTTCAGCGCGGCT 61.808 61.111 8.83 2.05 40.77 5.52
266 267 4.999939 CGGGCACGCAAAACCAGC 63.000 66.667 0.00 0.00 0.00 4.85
267 268 4.662961 GGGCACGCAAAACCAGCC 62.663 66.667 0.00 0.00 44.48 4.85
268 269 4.999939 GGCACGCAAAACCAGCCG 63.000 66.667 0.00 0.00 35.42 5.52
270 271 4.263209 CACGCAAAACCAGCCGCA 62.263 61.111 0.00 0.00 0.00 5.69
271 272 3.964875 ACGCAAAACCAGCCGCAG 61.965 61.111 0.00 0.00 0.00 5.18
290 291 4.084888 GCGCGCGCTAACAGGTTT 62.085 61.111 44.38 0.00 38.26 3.27
291 292 2.554272 CGCGCGCTAACAGGTTTT 59.446 55.556 30.48 0.00 0.00 2.43
292 293 1.082366 CGCGCGCTAACAGGTTTTT 60.082 52.632 30.48 0.00 0.00 1.94
320 321 2.202349 GCTTTAGCGCGGCTGTTG 60.202 61.111 8.83 1.76 40.10 3.33
321 322 2.966309 GCTTTAGCGCGGCTGTTGT 61.966 57.895 8.83 0.00 40.10 3.32
322 323 1.632046 GCTTTAGCGCGGCTGTTGTA 61.632 55.000 8.83 0.00 40.10 2.41
323 324 0.370273 CTTTAGCGCGGCTGTTGTAG 59.630 55.000 8.83 0.00 40.10 2.74
324 325 0.038067 TTTAGCGCGGCTGTTGTAGA 60.038 50.000 8.83 0.00 40.10 2.59
325 326 0.174845 TTAGCGCGGCTGTTGTAGAT 59.825 50.000 8.83 0.00 40.10 1.98
326 327 0.527600 TAGCGCGGCTGTTGTAGATG 60.528 55.000 8.83 0.00 40.10 2.90
327 328 2.703409 CGCGGCTGTTGTAGATGC 59.297 61.111 0.00 0.00 0.00 3.91
328 329 1.811266 CGCGGCTGTTGTAGATGCT 60.811 57.895 0.00 0.00 0.00 3.79
329 330 1.756375 CGCGGCTGTTGTAGATGCTC 61.756 60.000 0.00 0.00 0.00 4.26
330 331 0.460987 GCGGCTGTTGTAGATGCTCT 60.461 55.000 0.00 0.00 0.00 4.09
331 332 2.009042 GCGGCTGTTGTAGATGCTCTT 61.009 52.381 0.00 0.00 0.00 2.85
332 333 2.738643 GCGGCTGTTGTAGATGCTCTTA 60.739 50.000 0.00 0.00 0.00 2.10
333 334 3.119291 CGGCTGTTGTAGATGCTCTTAG 58.881 50.000 0.00 0.00 0.00 2.18
334 335 3.429547 CGGCTGTTGTAGATGCTCTTAGT 60.430 47.826 0.00 0.00 0.00 2.24
335 336 3.868077 GGCTGTTGTAGATGCTCTTAGTG 59.132 47.826 0.00 0.00 0.00 2.74
336 337 4.382040 GGCTGTTGTAGATGCTCTTAGTGA 60.382 45.833 0.00 0.00 0.00 3.41
337 338 4.803088 GCTGTTGTAGATGCTCTTAGTGAG 59.197 45.833 0.00 0.00 45.33 3.51
346 347 2.977772 CTCTTAGTGAGCAGGGGAAG 57.022 55.000 0.00 0.00 35.84 3.46
347 348 0.905357 TCTTAGTGAGCAGGGGAAGC 59.095 55.000 0.00 0.00 0.00 3.86
348 349 0.908198 CTTAGTGAGCAGGGGAAGCT 59.092 55.000 0.00 0.00 46.82 3.74
349 350 2.111384 CTTAGTGAGCAGGGGAAGCTA 58.889 52.381 0.00 0.00 43.58 3.32
350 351 2.478872 TAGTGAGCAGGGGAAGCTAT 57.521 50.000 0.00 0.00 43.58 2.97
351 352 2.478872 AGTGAGCAGGGGAAGCTATA 57.521 50.000 0.00 0.00 43.58 1.31
352 353 2.983296 AGTGAGCAGGGGAAGCTATAT 58.017 47.619 0.00 0.00 43.58 0.86
353 354 3.321950 AGTGAGCAGGGGAAGCTATATT 58.678 45.455 0.00 0.00 43.58 1.28
354 355 3.718956 AGTGAGCAGGGGAAGCTATATTT 59.281 43.478 0.00 0.00 43.58 1.40
355 356 4.166919 AGTGAGCAGGGGAAGCTATATTTT 59.833 41.667 0.00 0.00 43.58 1.82
356 357 4.276926 GTGAGCAGGGGAAGCTATATTTTG 59.723 45.833 0.00 0.00 43.58 2.44
357 358 4.165950 TGAGCAGGGGAAGCTATATTTTGA 59.834 41.667 0.00 0.00 43.58 2.69
358 359 4.464947 AGCAGGGGAAGCTATATTTTGAC 58.535 43.478 0.00 0.00 41.32 3.18
359 360 3.570125 GCAGGGGAAGCTATATTTTGACC 59.430 47.826 0.00 0.00 0.00 4.02
360 361 3.815401 CAGGGGAAGCTATATTTTGACCG 59.185 47.826 0.00 0.00 0.00 4.79
361 362 3.458487 AGGGGAAGCTATATTTTGACCGT 59.542 43.478 0.00 0.00 0.00 4.83
362 363 4.657039 AGGGGAAGCTATATTTTGACCGTA 59.343 41.667 0.00 0.00 0.00 4.02
363 364 4.995487 GGGGAAGCTATATTTTGACCGTAG 59.005 45.833 0.00 0.00 0.00 3.51
379 380 2.356135 CGTAGGTTTCCCTTGATGTGG 58.644 52.381 0.00 0.00 42.66 4.17
380 381 2.092323 GTAGGTTTCCCTTGATGTGGC 58.908 52.381 0.00 0.00 42.66 5.01
381 382 0.251787 AGGTTTCCCTTGATGTGGCC 60.252 55.000 0.00 0.00 38.13 5.36
382 383 1.595093 GGTTTCCCTTGATGTGGCCG 61.595 60.000 0.00 0.00 0.00 6.13
383 384 0.893727 GTTTCCCTTGATGTGGCCGT 60.894 55.000 0.00 0.00 0.00 5.68
384 385 0.178975 TTTCCCTTGATGTGGCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
385 386 0.608035 TTCCCTTGATGTGGCCGTTC 60.608 55.000 0.00 0.00 0.00 3.95
386 387 1.303236 CCCTTGATGTGGCCGTTCA 60.303 57.895 0.00 0.00 0.00 3.18
387 388 0.893270 CCCTTGATGTGGCCGTTCAA 60.893 55.000 12.57 12.57 0.00 2.69
388 389 0.958091 CCTTGATGTGGCCGTTCAAA 59.042 50.000 13.72 0.00 0.00 2.69
389 390 1.339610 CCTTGATGTGGCCGTTCAAAA 59.660 47.619 13.72 5.47 0.00 2.44
390 391 2.223923 CCTTGATGTGGCCGTTCAAAAA 60.224 45.455 13.72 5.21 0.00 1.94
391 392 3.554752 CCTTGATGTGGCCGTTCAAAAAT 60.555 43.478 13.72 0.00 0.00 1.82
392 393 4.321601 CCTTGATGTGGCCGTTCAAAAATA 60.322 41.667 13.72 0.00 0.00 1.40
393 394 5.398603 TTGATGTGGCCGTTCAAAAATAT 57.601 34.783 11.21 0.00 0.00 1.28
394 395 6.405286 CCTTGATGTGGCCGTTCAAAAATATA 60.405 38.462 13.72 0.00 0.00 0.86
395 396 5.885881 TGATGTGGCCGTTCAAAAATATAC 58.114 37.500 0.00 0.00 0.00 1.47
396 397 5.416013 TGATGTGGCCGTTCAAAAATATACA 59.584 36.000 0.00 0.00 0.00 2.29
397 398 5.049398 TGTGGCCGTTCAAAAATATACAC 57.951 39.130 0.00 0.00 0.00 2.90
398 399 4.082679 TGTGGCCGTTCAAAAATATACACC 60.083 41.667 0.00 0.00 0.00 4.16
399 400 3.444388 TGGCCGTTCAAAAATATACACCC 59.556 43.478 0.00 0.00 0.00 4.61
400 401 3.487879 GGCCGTTCAAAAATATACACCCG 60.488 47.826 0.00 0.00 0.00 5.28
401 402 3.374678 GCCGTTCAAAAATATACACCCGA 59.625 43.478 0.00 0.00 0.00 5.14
402 403 4.142643 GCCGTTCAAAAATATACACCCGAA 60.143 41.667 0.00 0.00 0.00 4.30
403 404 5.449451 GCCGTTCAAAAATATACACCCGAAT 60.449 40.000 0.00 0.00 0.00 3.34
404 405 6.238429 GCCGTTCAAAAATATACACCCGAATA 60.238 38.462 0.00 0.00 0.00 1.75
405 406 7.679164 GCCGTTCAAAAATATACACCCGAATAA 60.679 37.037 0.00 0.00 0.00 1.40
406 407 8.182881 CCGTTCAAAAATATACACCCGAATAAA 58.817 33.333 0.00 0.00 0.00 1.40
407 408 9.557338 CGTTCAAAAATATACACCCGAATAAAA 57.443 29.630 0.00 0.00 0.00 1.52
416 417 7.797038 ATACACCCGAATAAAACATAGGAAC 57.203 36.000 0.00 0.00 0.00 3.62
417 418 4.632688 ACACCCGAATAAAACATAGGAACG 59.367 41.667 0.00 0.00 0.00 3.95
418 419 4.034742 CACCCGAATAAAACATAGGAACGG 59.965 45.833 0.00 0.00 37.98 4.44
419 420 4.080975 ACCCGAATAAAACATAGGAACGGA 60.081 41.667 0.00 0.00 40.16 4.69
420 421 4.877251 CCCGAATAAAACATAGGAACGGAA 59.123 41.667 0.00 0.00 40.16 4.30
421 422 5.007332 CCCGAATAAAACATAGGAACGGAAG 59.993 44.000 0.00 0.00 40.16 3.46
422 423 5.007332 CCGAATAAAACATAGGAACGGAAGG 59.993 44.000 0.00 0.00 40.16 3.46
423 424 5.813672 CGAATAAAACATAGGAACGGAAGGA 59.186 40.000 0.00 0.00 0.00 3.36
424 425 6.018994 CGAATAAAACATAGGAACGGAAGGAG 60.019 42.308 0.00 0.00 0.00 3.69
425 426 2.693267 AACATAGGAACGGAAGGAGC 57.307 50.000 0.00 0.00 0.00 4.70
426 427 1.568504 ACATAGGAACGGAAGGAGCA 58.431 50.000 0.00 0.00 0.00 4.26
427 428 1.482593 ACATAGGAACGGAAGGAGCAG 59.517 52.381 0.00 0.00 0.00 4.24
428 429 1.123928 ATAGGAACGGAAGGAGCAGG 58.876 55.000 0.00 0.00 0.00 4.85
429 430 0.040646 TAGGAACGGAAGGAGCAGGA 59.959 55.000 0.00 0.00 0.00 3.86
430 431 1.219393 GGAACGGAAGGAGCAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
431 432 1.258445 GGAACGGAAGGAGCAGGAGA 61.258 60.000 0.00 0.00 0.00 3.71
432 433 0.174617 GAACGGAAGGAGCAGGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
433 434 0.251832 AACGGAAGGAGCAGGAGAGA 60.252 55.000 0.00 0.00 0.00 3.10
434 435 0.682855 ACGGAAGGAGCAGGAGAGAG 60.683 60.000 0.00 0.00 0.00 3.20
435 436 0.395036 CGGAAGGAGCAGGAGAGAGA 60.395 60.000 0.00 0.00 0.00 3.10
436 437 1.402787 GGAAGGAGCAGGAGAGAGAG 58.597 60.000 0.00 0.00 0.00 3.20
437 438 1.402787 GAAGGAGCAGGAGAGAGAGG 58.597 60.000 0.00 0.00 0.00 3.69
438 439 1.006813 AAGGAGCAGGAGAGAGAGGA 58.993 55.000 0.00 0.00 0.00 3.71
439 440 0.552848 AGGAGCAGGAGAGAGAGGAG 59.447 60.000 0.00 0.00 0.00 3.69
440 441 0.550914 GGAGCAGGAGAGAGAGGAGA 59.449 60.000 0.00 0.00 0.00 3.71
441 442 1.145738 GGAGCAGGAGAGAGAGGAGAT 59.854 57.143 0.00 0.00 0.00 2.75
446 447 1.217689 AGGAGAGAGAGGAGATGTGGG 59.782 57.143 0.00 0.00 0.00 4.61
528 529 4.011517 TCCTCGGGCCGGACAAAC 62.012 66.667 27.98 0.00 0.00 2.93
553 565 3.820843 GCCAATCCCCCGGTCCAT 61.821 66.667 0.00 0.00 0.00 3.41
554 566 2.457323 GCCAATCCCCCGGTCCATA 61.457 63.158 0.00 0.00 0.00 2.74
555 567 1.454539 CCAATCCCCCGGTCCATAC 59.545 63.158 0.00 0.00 0.00 2.39
556 568 1.060163 CCAATCCCCCGGTCCATACT 61.060 60.000 0.00 0.00 0.00 2.12
557 569 0.396811 CAATCCCCCGGTCCATACTC 59.603 60.000 0.00 0.00 0.00 2.59
558 570 0.767060 AATCCCCCGGTCCATACTCC 60.767 60.000 0.00 0.00 0.00 3.85
644 656 6.135290 TCAATCGCTTCAAATTAATCCCTG 57.865 37.500 0.00 0.00 0.00 4.45
755 784 3.080158 TTGTTGCCCTCCCTTGCCA 62.080 57.895 0.00 0.00 0.00 4.92
880 918 0.248843 AAGAAGGAAGAGGAGCAGCG 59.751 55.000 0.00 0.00 0.00 5.18
902 940 0.252193 AGAGGAGAAGGAGCTGCTGT 60.252 55.000 9.14 0.00 36.65 4.40
904 942 0.324285 AGGAGAAGGAGCTGCTGTTG 59.676 55.000 9.14 0.00 35.09 3.33
905 943 1.304509 GGAGAAGGAGCTGCTGTTGC 61.305 60.000 9.14 1.35 40.20 4.17
906 944 1.303155 AGAAGGAGCTGCTGTTGCC 60.303 57.895 9.14 1.12 38.71 4.52
1257 1313 3.664888 TGCTGCTCCAATGGCCCT 61.665 61.111 0.00 0.00 0.00 5.19
1407 1474 0.875059 CTGTTGCCGGTTCTTCTTCC 59.125 55.000 1.90 0.00 0.00 3.46
1596 1672 4.395583 GCGTCCGACGTCGACCTT 62.396 66.667 37.65 0.00 44.73 3.50
1899 1975 0.906282 GAACCCTCCCCGGTCTTACA 60.906 60.000 0.00 0.00 33.98 2.41
2230 2306 2.825836 GCCGCCATGGAGAACCTG 60.826 66.667 18.40 0.00 42.00 4.00
2333 2409 2.926200 CAGTCATCTCAAAGCTACACCG 59.074 50.000 0.00 0.00 0.00 4.94
2378 2455 0.959867 TTAACTTTAACCGGCCGCCC 60.960 55.000 22.85 0.00 0.00 6.13
2423 2500 3.617669 CGTTTTCGTTCTTCACTGCATT 58.382 40.909 0.00 0.00 38.65 3.56
2424 2501 4.035017 CGTTTTCGTTCTTCACTGCATTT 58.965 39.130 0.00 0.00 38.65 2.32
2425 2502 4.144731 CGTTTTCGTTCTTCACTGCATTTC 59.855 41.667 0.00 0.00 38.65 2.17
2500 2581 6.826741 TGCCTTAACCATTTGATTACTAGGAC 59.173 38.462 0.00 0.00 0.00 3.85
2539 2622 4.299586 TGGTCCATAGCTTGATCAACAA 57.700 40.909 3.38 0.00 36.97 2.83
2567 2650 2.227865 GCACGCCCTTAGAAATGTGAAA 59.772 45.455 0.00 0.00 0.00 2.69
2570 2653 4.396166 CACGCCCTTAGAAATGTGAAAGAT 59.604 41.667 0.00 0.00 0.00 2.40
2576 2669 7.500559 GCCCTTAGAAATGTGAAAGATGTCTAT 59.499 37.037 0.00 0.00 36.43 1.98
2686 2787 8.567948 GGAGTAGAATCAAAATTGACAACTGAA 58.432 33.333 0.00 0.00 40.49 3.02
2728 2838 2.313317 GGGTTCCATGATGCATGATGT 58.687 47.619 22.27 0.00 43.81 3.06
2729 2839 2.035449 GGGTTCCATGATGCATGATGTG 59.965 50.000 22.27 14.61 43.81 3.21
2730 2840 2.691526 GGTTCCATGATGCATGATGTGT 59.308 45.455 22.27 0.00 43.81 3.72
2752 2862 0.038983 TGTCATCGTGTGTGGTACCG 60.039 55.000 7.57 0.00 0.00 4.02
2755 2865 2.575893 ATCGTGTGTGGTACCGGCA 61.576 57.895 7.57 6.13 0.00 5.69
2757 2867 2.098233 CGTGTGTGGTACCGGCATC 61.098 63.158 7.57 0.00 0.00 3.91
2825 2962 1.278849 GATTTCGAGCGAGATCGGCC 61.279 60.000 10.86 0.00 42.93 6.13
2998 3136 3.245519 GCTTTCGTCTCGTGTCTTTTTCT 59.754 43.478 0.00 0.00 0.00 2.52
3030 3168 4.158764 TGGATCAAACGAACAAAACAACCT 59.841 37.500 0.00 0.00 0.00 3.50
3031 3169 5.357314 TGGATCAAACGAACAAAACAACCTA 59.643 36.000 0.00 0.00 0.00 3.08
3032 3170 6.127703 TGGATCAAACGAACAAAACAACCTAA 60.128 34.615 0.00 0.00 0.00 2.69
3033 3171 6.921307 GGATCAAACGAACAAAACAACCTAAT 59.079 34.615 0.00 0.00 0.00 1.73
3106 3248 1.001888 TACGTATCCCCAGTGGCCA 59.998 57.895 0.00 0.00 0.00 5.36
3155 3303 4.443063 GTGGTTTTCTACGGTGAATTTTGC 59.557 41.667 0.00 0.00 0.00 3.68
3183 3331 1.006832 CTAATGCCGTGTGTGCCTAC 58.993 55.000 0.00 0.00 0.00 3.18
3342 3496 0.179108 GAGGACGCCGAAGCTAACAT 60.179 55.000 0.00 0.00 36.60 2.71
3364 3518 1.565067 ACTACCCCGTAGTTCAAGGG 58.435 55.000 0.00 0.00 45.68 3.95
3427 3581 3.604582 GATAAGTCAAAGTGGCAGAGCT 58.395 45.455 0.00 0.00 0.00 4.09
3500 3660 2.464459 GGCCACGACTGCATGCTAC 61.464 63.158 20.33 9.07 0.00 3.58
3510 3670 1.411977 CTGCATGCTACCTCTACTGCT 59.588 52.381 20.33 0.00 0.00 4.24
3517 3677 1.611491 CTACCTCTACTGCTGCTAGCC 59.389 57.143 13.29 0.00 41.51 3.93
3518 3678 0.032615 ACCTCTACTGCTGCTAGCCT 60.033 55.000 13.29 0.00 41.51 4.58
3520 3680 1.110442 CTCTACTGCTGCTAGCCTGT 58.890 55.000 13.29 10.19 41.51 4.00
3521 3681 2.302260 CTCTACTGCTGCTAGCCTGTA 58.698 52.381 13.29 10.77 41.51 2.74
3522 3682 2.293122 CTCTACTGCTGCTAGCCTGTAG 59.707 54.545 21.53 21.53 42.83 2.74
3523 3683 2.028130 CTACTGCTGCTAGCCTGTAGT 58.972 52.381 23.68 23.68 41.51 2.73
3524 3684 2.145397 ACTGCTGCTAGCCTGTAGTA 57.855 50.000 20.71 8.20 41.51 1.82
3525 3685 1.751924 ACTGCTGCTAGCCTGTAGTAC 59.248 52.381 20.71 0.00 41.51 2.73
3526 3686 2.028130 CTGCTGCTAGCCTGTAGTACT 58.972 52.381 13.29 0.00 41.51 2.73
3579 3739 8.403236 GTCACCAACTTATAAGTTCAAAAGTGT 58.597 33.333 24.77 12.09 45.65 3.55
3679 3840 9.856162 TCCAACTTAAAACTTATAAGTCACCTT 57.144 29.630 18.28 11.56 41.49 3.50
3715 3876 2.424234 CCCACCACCTTTTCTCCTTCAA 60.424 50.000 0.00 0.00 0.00 2.69
3821 3986 2.750237 GCCCCGTCGCAATCCTTT 60.750 61.111 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.542890 TGCAAACTAAAAGTTCAAGACATGAA 58.457 30.769 0.00 0.00 45.71 2.57
5 6 7.094508 TGCAAACTAAAAGTTCAAGACATGA 57.905 32.000 0.00 0.00 37.47 3.07
6 7 7.935338 ATGCAAACTAAAAGTTCAAGACATG 57.065 32.000 0.00 0.00 37.47 3.21
7 8 8.819974 CAAATGCAAACTAAAAGTTCAAGACAT 58.180 29.630 0.00 0.00 37.47 3.06
8 9 8.031864 TCAAATGCAAACTAAAAGTTCAAGACA 58.968 29.630 0.00 0.00 37.47 3.41
9 10 8.406172 TCAAATGCAAACTAAAAGTTCAAGAC 57.594 30.769 0.00 0.00 37.47 3.01
10 11 8.868916 GTTCAAATGCAAACTAAAAGTTCAAGA 58.131 29.630 0.00 0.00 37.47 3.02
11 12 8.872845 AGTTCAAATGCAAACTAAAAGTTCAAG 58.127 29.630 0.00 0.00 37.47 3.02
12 13 8.770438 AGTTCAAATGCAAACTAAAAGTTCAA 57.230 26.923 0.00 0.00 37.47 2.69
13 14 8.655092 CAAGTTCAAATGCAAACTAAAAGTTCA 58.345 29.630 2.05 0.00 37.47 3.18
14 15 8.116136 CCAAGTTCAAATGCAAACTAAAAGTTC 58.884 33.333 2.05 0.00 37.47 3.01
15 16 7.606073 ACCAAGTTCAAATGCAAACTAAAAGTT 59.394 29.630 2.05 0.00 40.80 2.66
16 17 7.102993 ACCAAGTTCAAATGCAAACTAAAAGT 58.897 30.769 2.05 0.00 34.71 2.66
17 18 7.538303 ACCAAGTTCAAATGCAAACTAAAAG 57.462 32.000 2.05 0.00 34.71 2.27
18 19 7.148340 CCAACCAAGTTCAAATGCAAACTAAAA 60.148 33.333 2.05 0.00 34.71 1.52
19 20 6.314896 CCAACCAAGTTCAAATGCAAACTAAA 59.685 34.615 2.05 0.00 34.71 1.85
20 21 5.814705 CCAACCAAGTTCAAATGCAAACTAA 59.185 36.000 2.05 0.00 34.71 2.24
21 22 5.127845 TCCAACCAAGTTCAAATGCAAACTA 59.872 36.000 2.05 0.00 34.71 2.24
22 23 4.081198 TCCAACCAAGTTCAAATGCAAACT 60.081 37.500 0.00 0.00 37.32 2.66
23 24 4.187694 TCCAACCAAGTTCAAATGCAAAC 58.812 39.130 0.00 0.00 0.00 2.93
24 25 4.478206 TCCAACCAAGTTCAAATGCAAA 57.522 36.364 0.00 0.00 0.00 3.68
25 26 4.100653 TCATCCAACCAAGTTCAAATGCAA 59.899 37.500 0.00 0.00 0.00 4.08
26 27 3.640498 TCATCCAACCAAGTTCAAATGCA 59.360 39.130 0.00 0.00 0.00 3.96
27 28 4.255833 TCATCCAACCAAGTTCAAATGC 57.744 40.909 0.00 0.00 0.00 3.56
28 29 5.846203 AGTTCATCCAACCAAGTTCAAATG 58.154 37.500 0.00 0.00 35.28 2.32
29 30 6.127083 ACAAGTTCATCCAACCAAGTTCAAAT 60.127 34.615 0.00 0.00 35.28 2.32
30 31 5.186797 ACAAGTTCATCCAACCAAGTTCAAA 59.813 36.000 0.00 0.00 35.28 2.69
31 32 4.709397 ACAAGTTCATCCAACCAAGTTCAA 59.291 37.500 0.00 0.00 35.28 2.69
32 33 4.097741 CACAAGTTCATCCAACCAAGTTCA 59.902 41.667 0.00 0.00 35.28 3.18
33 34 4.499696 CCACAAGTTCATCCAACCAAGTTC 60.500 45.833 0.00 0.00 35.28 3.01
34 35 3.384467 CCACAAGTTCATCCAACCAAGTT 59.616 43.478 0.00 0.00 35.28 2.66
35 36 2.958355 CCACAAGTTCATCCAACCAAGT 59.042 45.455 0.00 0.00 35.28 3.16
36 37 2.297033 CCCACAAGTTCATCCAACCAAG 59.703 50.000 0.00 0.00 35.28 3.61
37 38 2.315176 CCCACAAGTTCATCCAACCAA 58.685 47.619 0.00 0.00 35.28 3.67
38 39 1.993956 CCCACAAGTTCATCCAACCA 58.006 50.000 0.00 0.00 35.28 3.67
39 40 0.603065 GCCCACAAGTTCATCCAACC 59.397 55.000 0.00 0.00 35.28 3.77
40 41 1.327303 TGCCCACAAGTTCATCCAAC 58.673 50.000 0.00 0.00 34.86 3.77
41 42 1.894466 CATGCCCACAAGTTCATCCAA 59.106 47.619 0.00 0.00 0.00 3.53
42 43 1.075212 TCATGCCCACAAGTTCATCCA 59.925 47.619 0.00 0.00 0.00 3.41
43 44 1.838112 TCATGCCCACAAGTTCATCC 58.162 50.000 0.00 0.00 0.00 3.51
44 45 4.460948 AAATCATGCCCACAAGTTCATC 57.539 40.909 0.00 0.00 0.00 2.92
45 46 4.283978 TCAAAATCATGCCCACAAGTTCAT 59.716 37.500 0.00 0.00 0.00 2.57
46 47 3.640498 TCAAAATCATGCCCACAAGTTCA 59.360 39.130 0.00 0.00 0.00 3.18
47 48 4.255833 TCAAAATCATGCCCACAAGTTC 57.744 40.909 0.00 0.00 0.00 3.01
48 49 4.283978 TCATCAAAATCATGCCCACAAGTT 59.716 37.500 0.00 0.00 0.00 2.66
49 50 3.833650 TCATCAAAATCATGCCCACAAGT 59.166 39.130 0.00 0.00 0.00 3.16
50 51 4.459390 TCATCAAAATCATGCCCACAAG 57.541 40.909 0.00 0.00 0.00 3.16
51 52 4.283978 AGTTCATCAAAATCATGCCCACAA 59.716 37.500 0.00 0.00 0.00 3.33
52 53 3.833650 AGTTCATCAAAATCATGCCCACA 59.166 39.130 0.00 0.00 0.00 4.17
53 54 4.460948 AGTTCATCAAAATCATGCCCAC 57.539 40.909 0.00 0.00 0.00 4.61
54 55 4.283978 ACAAGTTCATCAAAATCATGCCCA 59.716 37.500 0.00 0.00 0.00 5.36
55 56 4.628333 CACAAGTTCATCAAAATCATGCCC 59.372 41.667 0.00 0.00 0.00 5.36
56 57 4.628333 CCACAAGTTCATCAAAATCATGCC 59.372 41.667 0.00 0.00 0.00 4.40
57 58 4.628333 CCCACAAGTTCATCAAAATCATGC 59.372 41.667 0.00 0.00 0.00 4.06
58 59 4.628333 GCCCACAAGTTCATCAAAATCATG 59.372 41.667 0.00 0.00 0.00 3.07
59 60 4.283978 TGCCCACAAGTTCATCAAAATCAT 59.716 37.500 0.00 0.00 0.00 2.45
60 61 3.640498 TGCCCACAAGTTCATCAAAATCA 59.360 39.130 0.00 0.00 0.00 2.57
61 62 4.255833 TGCCCACAAGTTCATCAAAATC 57.744 40.909 0.00 0.00 0.00 2.17
62 63 4.283978 TGATGCCCACAAGTTCATCAAAAT 59.716 37.500 2.57 0.00 41.36 1.82
63 64 3.640498 TGATGCCCACAAGTTCATCAAAA 59.360 39.130 2.57 0.00 41.36 2.44
64 65 3.229293 TGATGCCCACAAGTTCATCAAA 58.771 40.909 2.57 0.00 41.36 2.69
65 66 2.874014 TGATGCCCACAAGTTCATCAA 58.126 42.857 2.57 0.00 41.36 2.57
66 67 2.557924 GTTGATGCCCACAAGTTCATCA 59.442 45.455 0.00 0.00 42.23 3.07
67 68 2.821969 AGTTGATGCCCACAAGTTCATC 59.178 45.455 0.00 0.00 36.70 2.92
68 69 2.880443 AGTTGATGCCCACAAGTTCAT 58.120 42.857 0.00 0.00 0.00 2.57
69 70 2.363306 AGTTGATGCCCACAAGTTCA 57.637 45.000 0.00 0.00 0.00 3.18
70 71 3.733443 AAAGTTGATGCCCACAAGTTC 57.267 42.857 0.00 0.00 39.13 3.01
71 72 5.806654 ATAAAAGTTGATGCCCACAAGTT 57.193 34.783 0.00 0.00 40.94 2.66
72 73 5.304101 TGAATAAAAGTTGATGCCCACAAGT 59.696 36.000 0.00 0.00 33.13 3.16
73 74 5.782047 TGAATAAAAGTTGATGCCCACAAG 58.218 37.500 0.00 0.00 0.00 3.16
74 75 5.798125 TGAATAAAAGTTGATGCCCACAA 57.202 34.783 0.00 0.00 0.00 3.33
75 76 5.479724 TGATGAATAAAAGTTGATGCCCACA 59.520 36.000 0.00 0.00 0.00 4.17
76 77 5.964758 TGATGAATAAAAGTTGATGCCCAC 58.035 37.500 0.00 0.00 0.00 4.61
77 78 6.211184 AGTTGATGAATAAAAGTTGATGCCCA 59.789 34.615 0.00 0.00 0.00 5.36
78 79 6.633856 AGTTGATGAATAAAAGTTGATGCCC 58.366 36.000 0.00 0.00 0.00 5.36
79 80 7.599998 ACAAGTTGATGAATAAAAGTTGATGCC 59.400 33.333 10.54 0.00 37.56 4.40
80 81 8.524870 ACAAGTTGATGAATAAAAGTTGATGC 57.475 30.769 10.54 0.00 37.56 3.91
83 84 9.868277 ACAAACAAGTTGATGAATAAAAGTTGA 57.132 25.926 10.54 0.00 39.87 3.18
84 85 9.904647 CACAAACAAGTTGATGAATAAAAGTTG 57.095 29.630 10.54 0.00 39.87 3.16
85 86 9.651913 ACACAAACAAGTTGATGAATAAAAGTT 57.348 25.926 10.54 0.00 39.87 2.66
86 87 9.301153 GACACAAACAAGTTGATGAATAAAAGT 57.699 29.630 10.54 2.44 39.87 2.66
87 88 9.299963 TGACACAAACAAGTTGATGAATAAAAG 57.700 29.630 10.54 0.00 39.87 2.27
88 89 9.645059 TTGACACAAACAAGTTGATGAATAAAA 57.355 25.926 10.54 1.09 39.87 1.52
89 90 9.645059 TTTGACACAAACAAGTTGATGAATAAA 57.355 25.926 10.54 7.49 39.87 1.40
90 91 9.814899 ATTTGACACAAACAAGTTGATGAATAA 57.185 25.926 10.54 2.64 39.87 1.40
91 92 9.814899 AATTTGACACAAACAAGTTGATGAATA 57.185 25.926 10.54 0.00 39.87 1.75
92 93 8.721019 AATTTGACACAAACAAGTTGATGAAT 57.279 26.923 10.54 2.53 39.87 2.57
93 94 8.545229 AAATTTGACACAAACAAGTTGATGAA 57.455 26.923 10.54 0.00 39.87 2.57
94 95 8.545229 AAAATTTGACACAAACAAGTTGATGA 57.455 26.923 10.54 0.00 39.87 2.92
95 96 9.687717 GTAAAATTTGACACAAACAAGTTGATG 57.312 29.630 10.54 10.51 39.87 3.07
96 97 9.429359 TGTAAAATTTGACACAAACAAGTTGAT 57.571 25.926 10.54 0.00 39.87 2.57
97 98 8.818141 TGTAAAATTTGACACAAACAAGTTGA 57.182 26.923 10.54 0.00 39.87 3.18
98 99 9.475505 CATGTAAAATTTGACACAAACAAGTTG 57.524 29.630 10.69 0.00 43.43 3.16
99 100 9.213799 ACATGTAAAATTTGACACAAACAAGTT 57.786 25.926 10.69 0.00 0.00 2.66
100 101 8.770438 ACATGTAAAATTTGACACAAACAAGT 57.230 26.923 10.69 0.00 0.00 3.16
101 102 9.687717 GAACATGTAAAATTTGACACAAACAAG 57.312 29.630 10.69 0.00 0.00 3.16
102 103 9.208022 TGAACATGTAAAATTTGACACAAACAA 57.792 25.926 10.69 0.00 0.00 2.83
103 104 8.763049 TGAACATGTAAAATTTGACACAAACA 57.237 26.923 10.69 6.88 0.00 2.83
120 121 9.218440 GGATATTTTGGACAAAAATGAACATGT 57.782 29.630 13.48 0.00 45.89 3.21
121 122 9.217278 TGGATATTTTGGACAAAAATGAACATG 57.783 29.630 13.48 0.00 45.89 3.21
122 123 9.962809 ATGGATATTTTGGACAAAAATGAACAT 57.037 25.926 13.48 11.29 45.89 2.71
135 136 9.656040 GCATTTTGCATATATGGATATTTTGGA 57.344 29.630 14.51 0.00 44.26 3.53
153 154 3.683587 GACTCGCCGGGCATTTTGC 62.684 63.158 20.71 0.00 44.08 3.68
154 155 2.485122 GACTCGCCGGGCATTTTG 59.515 61.111 20.71 1.74 0.00 2.44
155 156 3.124921 CGACTCGCCGGGCATTTT 61.125 61.111 20.71 0.00 0.00 1.82
172 173 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
173 174 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
178 179 2.100991 AGCGCGCTAAAATGCAGC 59.899 55.556 35.79 0.00 36.80 5.25
179 180 2.219562 GCAGCGCGCTAAAATGCAG 61.220 57.895 36.02 19.90 36.88 4.41
180 181 2.202466 GCAGCGCGCTAAAATGCA 60.202 55.556 36.02 0.00 36.88 3.96
249 250 4.999939 GCTGGTTTTGCGTGCCCG 63.000 66.667 0.00 0.00 37.07 6.13
250 251 4.662961 GGCTGGTTTTGCGTGCCC 62.663 66.667 0.00 0.00 37.81 5.36
251 252 4.999939 CGGCTGGTTTTGCGTGCC 63.000 66.667 0.00 0.00 40.14 5.01
253 254 4.263209 TGCGGCTGGTTTTGCGTG 62.263 61.111 0.00 0.00 0.00 5.34
254 255 3.964875 CTGCGGCTGGTTTTGCGT 61.965 61.111 0.00 0.00 0.00 5.24
273 274 3.588891 AAAACCTGTTAGCGCGCGC 62.589 57.895 45.10 45.10 42.33 6.86
274 275 1.082366 AAAAACCTGTTAGCGCGCG 60.082 52.632 28.44 28.44 0.00 6.86
275 276 4.935630 AAAAACCTGTTAGCGCGC 57.064 50.000 26.66 26.66 0.00 6.86
303 304 1.632046 TACAACAGCCGCGCTAAAGC 61.632 55.000 5.56 2.82 36.40 3.51
304 305 0.370273 CTACAACAGCCGCGCTAAAG 59.630 55.000 5.56 0.00 36.40 1.85
305 306 0.038067 TCTACAACAGCCGCGCTAAA 60.038 50.000 5.56 0.00 36.40 1.85
306 307 0.174845 ATCTACAACAGCCGCGCTAA 59.825 50.000 5.56 0.00 36.40 3.09
307 308 0.527600 CATCTACAACAGCCGCGCTA 60.528 55.000 5.56 0.00 36.40 4.26
308 309 1.811266 CATCTACAACAGCCGCGCT 60.811 57.895 5.56 0.00 40.77 5.92
309 310 2.703409 CATCTACAACAGCCGCGC 59.297 61.111 0.00 0.00 0.00 6.86
310 311 1.756375 GAGCATCTACAACAGCCGCG 61.756 60.000 0.00 0.00 0.00 6.46
311 312 2.009888 GAGCATCTACAACAGCCGC 58.990 57.895 0.00 0.00 0.00 6.53
328 329 0.905357 GCTTCCCCTGCTCACTAAGA 59.095 55.000 0.00 0.00 0.00 2.10
329 330 0.908198 AGCTTCCCCTGCTCACTAAG 59.092 55.000 0.00 0.00 35.67 2.18
330 331 2.247699 TAGCTTCCCCTGCTCACTAA 57.752 50.000 0.00 0.00 41.46 2.24
331 332 2.478872 ATAGCTTCCCCTGCTCACTA 57.521 50.000 0.00 0.00 41.46 2.74
332 333 2.478872 TATAGCTTCCCCTGCTCACT 57.521 50.000 0.00 0.00 41.46 3.41
333 334 3.778954 AATATAGCTTCCCCTGCTCAC 57.221 47.619 0.00 0.00 41.46 3.51
334 335 4.165950 TCAAAATATAGCTTCCCCTGCTCA 59.834 41.667 0.00 0.00 41.46 4.26
335 336 4.517075 GTCAAAATATAGCTTCCCCTGCTC 59.483 45.833 0.00 0.00 41.46 4.26
336 337 4.464947 GTCAAAATATAGCTTCCCCTGCT 58.535 43.478 0.00 0.00 43.79 4.24
337 338 3.570125 GGTCAAAATATAGCTTCCCCTGC 59.430 47.826 0.00 0.00 0.00 4.85
338 339 3.815401 CGGTCAAAATATAGCTTCCCCTG 59.185 47.826 0.00 0.00 0.00 4.45
339 340 3.458487 ACGGTCAAAATATAGCTTCCCCT 59.542 43.478 0.00 0.00 0.00 4.79
340 341 3.816994 ACGGTCAAAATATAGCTTCCCC 58.183 45.455 0.00 0.00 0.00 4.81
341 342 4.995487 CCTACGGTCAAAATATAGCTTCCC 59.005 45.833 0.00 0.00 0.00 3.97
342 343 5.608449 ACCTACGGTCAAAATATAGCTTCC 58.392 41.667 0.00 0.00 0.00 3.46
343 344 7.254692 GGAAACCTACGGTCAAAATATAGCTTC 60.255 40.741 0.00 0.00 33.12 3.86
344 345 6.541278 GGAAACCTACGGTCAAAATATAGCTT 59.459 38.462 0.00 0.00 33.12 3.74
345 346 6.053650 GGAAACCTACGGTCAAAATATAGCT 58.946 40.000 0.00 0.00 33.12 3.32
346 347 6.296365 GGAAACCTACGGTCAAAATATAGC 57.704 41.667 0.00 0.00 33.12 2.97
364 365 0.893727 ACGGCCACATCAAGGGAAAC 60.894 55.000 2.24 0.00 0.00 2.78
365 366 0.178975 AACGGCCACATCAAGGGAAA 60.179 50.000 2.24 0.00 0.00 3.13
366 367 0.608035 GAACGGCCACATCAAGGGAA 60.608 55.000 2.24 0.00 0.00 3.97
367 368 1.002624 GAACGGCCACATCAAGGGA 60.003 57.895 2.24 0.00 0.00 4.20
368 369 0.893270 TTGAACGGCCACATCAAGGG 60.893 55.000 2.24 0.00 0.00 3.95
369 370 0.958091 TTTGAACGGCCACATCAAGG 59.042 50.000 2.24 0.00 34.80 3.61
370 371 2.791383 TTTTGAACGGCCACATCAAG 57.209 45.000 2.24 0.00 34.80 3.02
371 372 3.742433 ATTTTTGAACGGCCACATCAA 57.258 38.095 2.24 7.18 0.00 2.57
372 373 5.416013 TGTATATTTTTGAACGGCCACATCA 59.584 36.000 2.24 0.00 0.00 3.07
373 374 5.741982 GTGTATATTTTTGAACGGCCACATC 59.258 40.000 2.24 0.00 0.00 3.06
374 375 5.393678 GGTGTATATTTTTGAACGGCCACAT 60.394 40.000 2.24 0.00 0.00 3.21
375 376 4.082679 GGTGTATATTTTTGAACGGCCACA 60.083 41.667 2.24 0.00 0.00 4.17
376 377 4.417506 GGTGTATATTTTTGAACGGCCAC 58.582 43.478 2.24 0.00 0.00 5.01
377 378 3.444388 GGGTGTATATTTTTGAACGGCCA 59.556 43.478 2.24 0.00 0.00 5.36
378 379 3.487879 CGGGTGTATATTTTTGAACGGCC 60.488 47.826 0.00 0.00 0.00 6.13
379 380 3.374678 TCGGGTGTATATTTTTGAACGGC 59.625 43.478 0.00 0.00 0.00 5.68
380 381 5.548706 TTCGGGTGTATATTTTTGAACGG 57.451 39.130 0.00 0.00 0.00 4.44
381 382 9.557338 TTTTATTCGGGTGTATATTTTTGAACG 57.443 29.630 0.00 0.00 0.00 3.95
390 391 9.498176 GTTCCTATGTTTTATTCGGGTGTATAT 57.502 33.333 0.00 0.00 0.00 0.86
391 392 7.652909 CGTTCCTATGTTTTATTCGGGTGTATA 59.347 37.037 0.00 0.00 0.00 1.47
392 393 6.480981 CGTTCCTATGTTTTATTCGGGTGTAT 59.519 38.462 0.00 0.00 0.00 2.29
393 394 5.811613 CGTTCCTATGTTTTATTCGGGTGTA 59.188 40.000 0.00 0.00 0.00 2.90
394 395 4.632688 CGTTCCTATGTTTTATTCGGGTGT 59.367 41.667 0.00 0.00 0.00 4.16
395 396 4.034742 CCGTTCCTATGTTTTATTCGGGTG 59.965 45.833 0.00 0.00 33.20 4.61
396 397 4.080975 TCCGTTCCTATGTTTTATTCGGGT 60.081 41.667 0.00 0.00 36.72 5.28
397 398 4.444536 TCCGTTCCTATGTTTTATTCGGG 58.555 43.478 0.00 0.00 36.72 5.14
398 399 5.007332 CCTTCCGTTCCTATGTTTTATTCGG 59.993 44.000 0.00 0.00 37.29 4.30
399 400 5.813672 TCCTTCCGTTCCTATGTTTTATTCG 59.186 40.000 0.00 0.00 0.00 3.34
400 401 6.238402 GCTCCTTCCGTTCCTATGTTTTATTC 60.238 42.308 0.00 0.00 0.00 1.75
401 402 5.589050 GCTCCTTCCGTTCCTATGTTTTATT 59.411 40.000 0.00 0.00 0.00 1.40
402 403 5.123936 GCTCCTTCCGTTCCTATGTTTTAT 58.876 41.667 0.00 0.00 0.00 1.40
403 404 4.020039 TGCTCCTTCCGTTCCTATGTTTTA 60.020 41.667 0.00 0.00 0.00 1.52
404 405 3.244770 TGCTCCTTCCGTTCCTATGTTTT 60.245 43.478 0.00 0.00 0.00 2.43
405 406 2.304761 TGCTCCTTCCGTTCCTATGTTT 59.695 45.455 0.00 0.00 0.00 2.83
406 407 1.906574 TGCTCCTTCCGTTCCTATGTT 59.093 47.619 0.00 0.00 0.00 2.71
407 408 1.482593 CTGCTCCTTCCGTTCCTATGT 59.517 52.381 0.00 0.00 0.00 2.29
408 409 1.202580 CCTGCTCCTTCCGTTCCTATG 60.203 57.143 0.00 0.00 0.00 2.23
409 410 1.123928 CCTGCTCCTTCCGTTCCTAT 58.876 55.000 0.00 0.00 0.00 2.57
410 411 0.040646 TCCTGCTCCTTCCGTTCCTA 59.959 55.000 0.00 0.00 0.00 2.94
411 412 1.229209 TCCTGCTCCTTCCGTTCCT 60.229 57.895 0.00 0.00 0.00 3.36
412 413 1.219393 CTCCTGCTCCTTCCGTTCC 59.781 63.158 0.00 0.00 0.00 3.62
413 414 0.174617 CTCTCCTGCTCCTTCCGTTC 59.825 60.000 0.00 0.00 0.00 3.95
414 415 0.251832 TCTCTCCTGCTCCTTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
415 416 0.682855 CTCTCTCCTGCTCCTTCCGT 60.683 60.000 0.00 0.00 0.00 4.69
416 417 0.395036 TCTCTCTCCTGCTCCTTCCG 60.395 60.000 0.00 0.00 0.00 4.30
417 418 1.402787 CTCTCTCTCCTGCTCCTTCC 58.597 60.000 0.00 0.00 0.00 3.46
418 419 1.064017 TCCTCTCTCTCCTGCTCCTTC 60.064 57.143 0.00 0.00 0.00 3.46
419 420 1.006813 TCCTCTCTCTCCTGCTCCTT 58.993 55.000 0.00 0.00 0.00 3.36
420 421 0.552848 CTCCTCTCTCTCCTGCTCCT 59.447 60.000 0.00 0.00 0.00 3.69
421 422 0.550914 TCTCCTCTCTCTCCTGCTCC 59.449 60.000 0.00 0.00 0.00 4.70
422 423 2.233271 CATCTCCTCTCTCTCCTGCTC 58.767 57.143 0.00 0.00 0.00 4.26
423 424 1.570501 ACATCTCCTCTCTCTCCTGCT 59.429 52.381 0.00 0.00 0.00 4.24
424 425 1.682854 CACATCTCCTCTCTCTCCTGC 59.317 57.143 0.00 0.00 0.00 4.85
425 426 2.309613 CCACATCTCCTCTCTCTCCTG 58.690 57.143 0.00 0.00 0.00 3.86
426 427 1.217689 CCCACATCTCCTCTCTCTCCT 59.782 57.143 0.00 0.00 0.00 3.69
427 428 1.703411 CCCACATCTCCTCTCTCTCC 58.297 60.000 0.00 0.00 0.00 3.71
428 429 1.039856 GCCCACATCTCCTCTCTCTC 58.960 60.000 0.00 0.00 0.00 3.20
429 430 0.754957 CGCCCACATCTCCTCTCTCT 60.755 60.000 0.00 0.00 0.00 3.10
430 431 1.739049 CGCCCACATCTCCTCTCTC 59.261 63.158 0.00 0.00 0.00 3.20
431 432 1.760086 CCGCCCACATCTCCTCTCT 60.760 63.158 0.00 0.00 0.00 3.10
432 433 2.818132 CCGCCCACATCTCCTCTC 59.182 66.667 0.00 0.00 0.00 3.20
433 434 3.474570 GCCGCCCACATCTCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
434 435 4.899239 CGCCGCCCACATCTCCTC 62.899 72.222 0.00 0.00 0.00 3.71
546 558 1.041437 GAGGAAGGGAGTATGGACCG 58.959 60.000 0.00 0.00 0.00 4.79
547 559 1.062044 AGGAGGAAGGGAGTATGGACC 60.062 57.143 0.00 0.00 0.00 4.46
548 560 2.321719 GAGGAGGAAGGGAGTATGGAC 58.678 57.143 0.00 0.00 0.00 4.02
549 561 1.937350 TGAGGAGGAAGGGAGTATGGA 59.063 52.381 0.00 0.00 0.00 3.41
550 562 2.324541 CTGAGGAGGAAGGGAGTATGG 58.675 57.143 0.00 0.00 0.00 2.74
551 563 2.962421 GACTGAGGAGGAAGGGAGTATG 59.038 54.545 0.00 0.00 0.00 2.39
552 564 2.090999 GGACTGAGGAGGAAGGGAGTAT 60.091 54.545 0.00 0.00 0.00 2.12
553 565 1.288335 GGACTGAGGAGGAAGGGAGTA 59.712 57.143 0.00 0.00 0.00 2.59
554 566 0.041982 GGACTGAGGAGGAAGGGAGT 59.958 60.000 0.00 0.00 0.00 3.85
555 567 0.689412 GGGACTGAGGAGGAAGGGAG 60.689 65.000 0.00 0.00 0.00 4.30
556 568 1.392534 GGGACTGAGGAGGAAGGGA 59.607 63.158 0.00 0.00 0.00 4.20
557 569 1.690985 GGGGACTGAGGAGGAAGGG 60.691 68.421 0.00 0.00 0.00 3.95
558 570 1.394151 AGGGGACTGAGGAGGAAGG 59.606 63.158 0.00 0.00 41.13 3.46
755 784 2.939261 GCAGCAGTGGCAAGGCAAT 61.939 57.895 13.27 0.00 44.61 3.56
786 815 2.173782 CTCCCTCTCCACTCTACAGCTA 59.826 54.545 0.00 0.00 0.00 3.32
880 918 0.746659 GCAGCTCCTTCTCCTCTCTC 59.253 60.000 0.00 0.00 0.00 3.20
902 940 3.052082 GAGCGAGCAAGCAGGCAA 61.052 61.111 6.21 0.00 40.15 4.52
906 944 3.851077 CAGCGAGCGAGCAAGCAG 61.851 66.667 14.81 5.48 40.15 4.24
1131 1175 2.249557 TAAGACGACGCTCGCTCCAC 62.250 60.000 0.00 0.00 45.12 4.02
1172 1228 3.561213 CTGTCATGCCGCAGCGAG 61.561 66.667 18.75 7.72 44.31 5.03
1176 1232 2.758089 GGAAGCTGTCATGCCGCAG 61.758 63.158 0.00 7.20 35.93 5.18
1177 1233 2.747460 GGAAGCTGTCATGCCGCA 60.747 61.111 0.00 0.00 0.00 5.69
1178 1234 3.512516 GGGAAGCTGTCATGCCGC 61.513 66.667 0.00 0.00 0.00 6.53
1179 1235 1.372087 GAAGGGAAGCTGTCATGCCG 61.372 60.000 0.00 0.00 31.42 5.69
1180 1236 1.034292 GGAAGGGAAGCTGTCATGCC 61.034 60.000 0.00 0.00 0.00 4.40
1181 1237 1.034292 GGGAAGGGAAGCTGTCATGC 61.034 60.000 0.00 0.00 0.00 4.06
1182 1238 0.622665 AGGGAAGGGAAGCTGTCATG 59.377 55.000 0.00 0.00 0.00 3.07
1407 1474 4.033776 ACCACCACCATGAGCCGG 62.034 66.667 0.00 0.00 0.00 6.13
1596 1672 2.871099 GTGACGCAGCTCTCGAGA 59.129 61.111 15.70 15.70 0.00 4.04
2281 2357 3.927142 CCTTAAGGTTGAAGCAGTAGACG 59.073 47.826 13.83 0.00 0.00 4.18
2333 2409 3.636381 AGTCAAGACGAGACGTTAAACC 58.364 45.455 0.00 0.00 41.37 3.27
2378 2455 0.865769 AGCAGGAAAGCAACGTAACG 59.134 50.000 0.00 0.00 36.85 3.18
2379 2456 1.197036 GGAGCAGGAAAGCAACGTAAC 59.803 52.381 0.00 0.00 36.85 2.50
2380 2457 1.202710 TGGAGCAGGAAAGCAACGTAA 60.203 47.619 0.00 0.00 36.85 3.18
2381 2458 0.394938 TGGAGCAGGAAAGCAACGTA 59.605 50.000 0.00 0.00 36.85 3.57
2382 2459 0.886490 CTGGAGCAGGAAAGCAACGT 60.886 55.000 0.00 0.00 36.85 3.99
2423 2500 3.146066 ACTATTTGCGGCAGTGAAAGAA 58.854 40.909 1.67 0.00 0.00 2.52
2424 2501 2.742053 GACTATTTGCGGCAGTGAAAGA 59.258 45.455 1.67 0.00 0.00 2.52
2425 2502 2.474526 CGACTATTTGCGGCAGTGAAAG 60.475 50.000 1.67 0.87 0.00 2.62
2500 2581 4.157840 GGACCAAAAATAGGTAGCCTTGTG 59.842 45.833 0.00 0.00 40.09 3.33
2539 2622 0.036765 TCTAAGGGCGTGCGTTCAAT 60.037 50.000 0.00 0.00 0.00 2.57
2598 2691 2.481952 CTCAGTAGAAGCAGCAACCAAC 59.518 50.000 0.00 0.00 0.00 3.77
2656 2750 6.240894 TGTCAATTTTGATTCTACTCCAGCT 58.759 36.000 0.00 0.00 39.73 4.24
2657 2751 6.500684 TGTCAATTTTGATTCTACTCCAGC 57.499 37.500 0.00 0.00 39.73 4.85
2658 2752 8.019669 CAGTTGTCAATTTTGATTCTACTCCAG 58.980 37.037 0.00 0.00 39.73 3.86
2659 2753 7.719193 TCAGTTGTCAATTTTGATTCTACTCCA 59.281 33.333 0.00 0.00 39.73 3.86
2660 2754 8.099364 TCAGTTGTCAATTTTGATTCTACTCC 57.901 34.615 0.00 0.00 39.73 3.85
2728 2838 0.596341 CCACACACGATGACACGACA 60.596 55.000 0.00 0.00 37.03 4.35
2729 2839 0.596600 ACCACACACGATGACACGAC 60.597 55.000 0.00 0.00 37.03 4.34
2730 2840 0.953003 TACCACACACGATGACACGA 59.047 50.000 0.00 0.00 37.03 4.35
2752 2862 1.706287 GAGTTCGCTTTCCGGATGCC 61.706 60.000 19.88 9.49 37.59 4.40
2755 2865 4.496670 CGAGTTCGCTTTCCGGAT 57.503 55.556 4.15 0.00 37.59 4.18
2825 2962 2.281359 GTACGTACGAATGGCCACG 58.719 57.895 24.41 11.68 40.15 4.94
2950 3088 2.477754 GCTTGTAACCACGTAGTTGTCC 59.522 50.000 9.74 0.00 41.61 4.02
2985 3123 5.007626 CCATGACAAGAAGAAAAAGACACGA 59.992 40.000 0.00 0.00 0.00 4.35
2998 3136 4.819088 TGTTCGTTTGATCCATGACAAGAA 59.181 37.500 0.00 0.00 0.00 2.52
3031 3169 8.131100 GCATGCATGTAGTCAGTGTATTTAATT 58.869 33.333 26.79 0.00 0.00 1.40
3032 3170 7.282901 TGCATGCATGTAGTCAGTGTATTTAAT 59.717 33.333 26.79 0.00 0.00 1.40
3033 3171 6.597280 TGCATGCATGTAGTCAGTGTATTTAA 59.403 34.615 26.79 0.00 0.00 1.52
3073 3215 5.163824 GGGATACGTACAAAGTTTGTTAGGC 60.164 44.000 25.35 12.70 40.97 3.93
3106 3248 1.299976 GTCGGGGAAACATGGCTCT 59.700 57.895 0.00 0.00 0.00 4.09
3155 3303 1.665679 ACACGGCATTAGAAGCAATCG 59.334 47.619 0.00 0.00 0.00 3.34
3183 3331 2.202797 CCTCCATCTGCACGGTCG 60.203 66.667 0.00 0.00 0.00 4.79
3342 3496 3.091545 CCTTGAACTACGGGGTAGTACA 58.908 50.000 8.70 0.00 46.96 2.90
3364 3518 2.588314 CATCTGCTCGCTCAGGCC 60.588 66.667 0.00 0.00 34.91 5.19
3399 3553 1.659098 CACTTTGACTTATCGTCGCCC 59.341 52.381 0.00 0.00 45.87 6.13
3427 3581 2.725312 GCCTCCTCCGTGCTCATCA 61.725 63.158 0.00 0.00 0.00 3.07
3480 3640 2.857575 TAGCATGCAGTCGTGGCCAG 62.858 60.000 21.98 0.00 0.00 4.85
3481 3641 2.953488 TAGCATGCAGTCGTGGCCA 61.953 57.895 21.98 0.00 0.00 5.36
3489 3649 1.137872 GCAGTAGAGGTAGCATGCAGT 59.862 52.381 21.98 1.90 33.92 4.40
3500 3660 0.388659 CAGGCTAGCAGCAGTAGAGG 59.611 60.000 18.24 0.00 44.75 3.69
3510 3670 4.142004 GCCTTAAAGTACTACAGGCTAGCA 60.142 45.833 23.59 0.00 45.72 3.49
3517 3677 4.820894 ACAGGGCCTTAAAGTACTACAG 57.179 45.455 1.32 0.00 0.00 2.74
3518 3678 5.310451 CAAACAGGGCCTTAAAGTACTACA 58.690 41.667 1.32 0.00 0.00 2.74
3520 3680 4.351704 ACCAAACAGGGCCTTAAAGTACTA 59.648 41.667 1.32 0.00 43.89 1.82
3521 3681 3.139584 ACCAAACAGGGCCTTAAAGTACT 59.860 43.478 1.32 0.00 43.89 2.73
3522 3682 3.493334 ACCAAACAGGGCCTTAAAGTAC 58.507 45.455 1.32 0.00 43.89 2.73
3523 3683 3.887916 ACCAAACAGGGCCTTAAAGTA 57.112 42.857 1.32 0.00 43.89 2.24
3524 3684 2.767644 ACCAAACAGGGCCTTAAAGT 57.232 45.000 1.32 0.00 43.89 2.66
3525 3685 3.386402 TGAAACCAAACAGGGCCTTAAAG 59.614 43.478 1.32 0.00 43.89 1.85
3526 3686 3.375699 TGAAACCAAACAGGGCCTTAAA 58.624 40.909 1.32 0.00 43.89 1.52
3715 3876 0.976073 ACGGGTGGAATCGATGGACT 60.976 55.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.