Multiple sequence alignment - TraesCS4B01G346200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G346200 chr4B 100.000 5556 0 0 1 5556 640011973 640006418 0.000000e+00 10261.0
1 TraesCS4B01G346200 chr4D 91.237 4679 247 75 215 4815 498036645 498032052 0.000000e+00 6218.0
2 TraesCS4B01G346200 chr4D 91.489 517 37 6 5016 5529 498031777 498031265 0.000000e+00 704.0
3 TraesCS4B01G346200 chr4D 88.710 124 11 1 4839 4962 498031986 498031866 1.250000e-31 148.0
4 TraesCS4B01G346200 chr5A 91.776 1836 82 25 1021 2817 678565167 678563362 0.000000e+00 2490.0
5 TraesCS4B01G346200 chr5A 94.600 1426 68 7 2920 4338 678563365 678561942 0.000000e+00 2198.0
6 TraesCS4B01G346200 chr5A 92.793 111 5 2 2815 2923 651716777 651716886 2.070000e-34 158.0
7 TraesCS4B01G346200 chr5A 95.000 60 3 0 563 622 678565666 678565607 1.650000e-15 95.3
8 TraesCS4B01G346200 chr7B 92.051 1497 90 16 3290 4775 453796573 453798051 0.000000e+00 2078.0
9 TraesCS4B01G346200 chr7B 91.984 1497 91 16 3290 4775 611457304 611458782 0.000000e+00 2073.0
10 TraesCS4B01G346200 chr7B 90.940 1159 61 15 1200 2345 611443597 611444724 0.000000e+00 1519.0
11 TraesCS4B01G346200 chr7B 91.758 1007 38 11 1749 2724 453795584 453796576 0.000000e+00 1358.0
12 TraesCS4B01G346200 chr7B 90.074 403 20 8 2341 2724 611456906 611457307 6.420000e-139 505.0
13 TraesCS4B01G346200 chr7B 90.640 203 16 3 5016 5217 611458918 611459118 3.300000e-67 267.0
14 TraesCS4B01G346200 chr7B 90.148 203 17 3 5016 5217 453798187 453798387 1.540000e-65 261.0
15 TraesCS4B01G346200 chr7B 88.000 75 8 1 5458 5531 84488502 84488576 2.760000e-13 87.9
16 TraesCS4B01G346200 chr7B 87.143 70 8 1 400 468 747589177 747589108 1.660000e-10 78.7
17 TraesCS4B01G346200 chr7A 91.917 1497 92 16 3290 4775 644344736 644343258 0.000000e+00 2067.0
18 TraesCS4B01G346200 chr7A 90.722 1552 81 21 1206 2724 644346254 644344733 0.000000e+00 2010.0
19 TraesCS4B01G346200 chr7A 90.148 203 17 3 5016 5217 644343122 644342922 1.540000e-65 261.0
20 TraesCS4B01G346200 chr2B 91.784 1497 94 16 3290 4775 84069767 84068289 0.000000e+00 2056.0
21 TraesCS4B01G346200 chr2B 91.717 1497 94 17 3290 4775 689672940 689674417 0.000000e+00 2050.0
22 TraesCS4B01G346200 chr2B 90.623 1557 85 20 1200 2724 74652285 74653812 0.000000e+00 2010.0
23 TraesCS4B01G346200 chr2B 90.559 1557 81 23 1200 2724 689671421 689672943 0.000000e+00 2001.0
24 TraesCS4B01G346200 chr2B 91.209 1456 69 19 1301 2724 84071192 84069764 0.000000e+00 1925.0
25 TraesCS4B01G346200 chr2B 90.640 203 16 3 5016 5217 74655403 74655603 3.300000e-67 267.0
26 TraesCS4B01G346200 chr2B 90.640 203 16 3 5016 5217 84068153 84067953 3.300000e-67 267.0
27 TraesCS4B01G346200 chr2B 90.148 203 17 3 5016 5217 689674553 689674753 1.540000e-65 261.0
28 TraesCS4B01G346200 chr1B 91.137 1557 76 20 1200 2724 294963409 294964935 0.000000e+00 2054.0
29 TraesCS4B01G346200 chr1B 91.583 1497 97 16 3290 4775 462139875 462138397 0.000000e+00 2039.0
30 TraesCS4B01G346200 chr1B 91.450 1497 99 15 3290 4775 294964932 294966410 0.000000e+00 2028.0
31 TraesCS4B01G346200 chr1B 90.528 1552 82 19 1206 2724 462141391 462139872 0.000000e+00 1991.0
32 TraesCS4B01G346200 chr1B 88.889 207 19 4 5013 5217 462138265 462138061 9.240000e-63 252.0
33 TraesCS4B01G346200 chr1B 91.964 112 6 2 2816 2925 678067344 678067234 2.680000e-33 154.0
34 TraesCS4B01G346200 chr6B 91.650 1497 96 16 3290 4775 448129858 448131336 0.000000e+00 2045.0
35 TraesCS4B01G346200 chr6B 90.669 1554 82 22 1203 2724 448128339 448129861 0.000000e+00 2008.0
36 TraesCS4B01G346200 chrUn 88.511 940 74 16 4103 5025 392915724 392916646 0.000000e+00 1107.0
37 TraesCS4B01G346200 chrUn 87.798 377 35 9 5016 5386 392916698 392917069 1.110000e-116 431.0
38 TraesCS4B01G346200 chr1A 91.453 117 8 1 2808 2922 486342285 486342401 5.760000e-35 159.0
39 TraesCS4B01G346200 chr1A 91.525 118 2 2 2814 2923 399505739 399505856 7.450000e-34 156.0
40 TraesCS4B01G346200 chr5B 92.727 110 5 2 2815 2922 477078441 477078549 7.450000e-34 156.0
41 TraesCS4B01G346200 chr2D 91.964 112 5 3 2812 2919 633850174 633850285 2.680000e-33 154.0
42 TraesCS4B01G346200 chr7D 91.150 113 6 2 2812 2922 46086981 46086871 3.470000e-32 150.0
43 TraesCS4B01G346200 chr7D 89.167 120 7 4 2810 2924 390929779 390929897 1.610000e-30 145.0
44 TraesCS4B01G346200 chr5D 91.489 47 2 2 5456 5502 128660772 128660728 4.650000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G346200 chr4B 640006418 640011973 5555 True 10261.000000 10261 100.000000 1 5556 1 chr4B.!!$R1 5555
1 TraesCS4B01G346200 chr4D 498031265 498036645 5380 True 2356.666667 6218 90.478667 215 5529 3 chr4D.!!$R1 5314
2 TraesCS4B01G346200 chr5A 678561942 678565666 3724 True 1594.433333 2490 93.792000 563 4338 3 chr5A.!!$R1 3775
3 TraesCS4B01G346200 chr7B 611443597 611444724 1127 False 1519.000000 1519 90.940000 1200 2345 1 chr7B.!!$F2 1145
4 TraesCS4B01G346200 chr7B 453795584 453798387 2803 False 1232.333333 2078 91.319000 1749 5217 3 chr7B.!!$F3 3468
5 TraesCS4B01G346200 chr7B 611456906 611459118 2212 False 948.333333 2073 90.899333 2341 5217 3 chr7B.!!$F4 2876
6 TraesCS4B01G346200 chr7A 644342922 644346254 3332 True 1446.000000 2067 90.929000 1206 5217 3 chr7A.!!$R1 4011
7 TraesCS4B01G346200 chr2B 689671421 689674753 3332 False 1437.333333 2050 90.808000 1200 5217 3 chr2B.!!$F2 4017
8 TraesCS4B01G346200 chr2B 84067953 84071192 3239 True 1416.000000 2056 91.211000 1301 5217 3 chr2B.!!$R1 3916
9 TraesCS4B01G346200 chr2B 74652285 74655603 3318 False 1138.500000 2010 90.631500 1200 5217 2 chr2B.!!$F1 4017
10 TraesCS4B01G346200 chr1B 294963409 294966410 3001 False 2041.000000 2054 91.293500 1200 4775 2 chr1B.!!$F1 3575
11 TraesCS4B01G346200 chr1B 462138061 462141391 3330 True 1427.333333 2039 90.333333 1206 5217 3 chr1B.!!$R2 4011
12 TraesCS4B01G346200 chr6B 448128339 448131336 2997 False 2026.500000 2045 91.159500 1203 4775 2 chr6B.!!$F1 3572
13 TraesCS4B01G346200 chrUn 392915724 392917069 1345 False 769.000000 1107 88.154500 4103 5386 2 chrUn.!!$F1 1283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 647 0.096976 CGTATTTGCGCCACTTGGAG 59.903 55.0 4.18 0.0 37.39 3.86 F
1588 1670 0.250597 GTCGCCCTACAAGGTTGGTT 60.251 55.0 0.00 0.0 31.93 3.67 F
2700 2826 0.037326 TTTCTTCTGGCAGTCGCGAT 60.037 50.0 14.06 0.0 39.92 4.58 F
4407 5096 0.120377 TCCCAAGTCCCAGGTACCAT 59.880 55.0 15.94 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1673 0.038166 AATCGGAAGCAAGCAAGGGA 59.962 50.000 0.00 0.0 0.00 4.20 R
3035 3708 0.550914 AAGACCACTTGAGCCCACAA 59.449 50.000 0.00 0.0 34.80 3.33 R
4534 5228 1.030457 ACCGGATGTAGCTCCTAACG 58.970 55.000 9.46 0.0 32.77 3.18 R
5439 6250 1.222113 GGCCCCTGTGCTACTTCTC 59.778 63.158 0.00 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.622549 ACGTCCACAAAAATCAAGTTTAACA 58.377 32.000 0.00 0.00 0.00 2.41
25 26 7.262048 ACGTCCACAAAAATCAAGTTTAACAT 58.738 30.769 0.00 0.00 0.00 2.71
26 27 8.407064 ACGTCCACAAAAATCAAGTTTAACATA 58.593 29.630 0.00 0.00 0.00 2.29
27 28 9.405587 CGTCCACAAAAATCAAGTTTAACATAT 57.594 29.630 0.00 0.00 0.00 1.78
78 79 8.828688 ACATAAATAAAACTAGATAGTCCCGC 57.171 34.615 0.00 0.00 34.99 6.13
79 80 7.876582 ACATAAATAAAACTAGATAGTCCCGCC 59.123 37.037 0.00 0.00 34.99 6.13
80 81 2.884894 AAAACTAGATAGTCCCGCCG 57.115 50.000 0.00 0.00 34.99 6.46
81 82 0.388294 AAACTAGATAGTCCCGCCGC 59.612 55.000 0.00 0.00 34.99 6.53
82 83 1.461911 AACTAGATAGTCCCGCCGCC 61.462 60.000 0.00 0.00 34.99 6.13
83 84 2.979197 CTAGATAGTCCCGCCGCCG 61.979 68.421 0.00 0.00 0.00 6.46
101 102 3.187955 GGTGAGGCCGTAGTACTCT 57.812 57.895 0.00 0.00 32.58 3.24
102 103 1.472188 GGTGAGGCCGTAGTACTCTT 58.528 55.000 0.00 0.00 32.58 2.85
103 104 1.404748 GGTGAGGCCGTAGTACTCTTC 59.595 57.143 0.00 0.00 32.58 2.87
104 105 2.089980 GTGAGGCCGTAGTACTCTTCA 58.910 52.381 0.00 0.00 32.58 3.02
105 106 2.097791 GTGAGGCCGTAGTACTCTTCAG 59.902 54.545 0.00 0.00 32.58 3.02
106 107 2.290768 TGAGGCCGTAGTACTCTTCAGT 60.291 50.000 0.00 0.00 36.55 3.41
107 108 3.054875 TGAGGCCGTAGTACTCTTCAGTA 60.055 47.826 0.00 0.00 33.62 2.74
108 109 3.543665 AGGCCGTAGTACTCTTCAGTAG 58.456 50.000 0.00 0.00 35.67 2.57
109 110 2.033174 GGCCGTAGTACTCTTCAGTAGC 59.967 54.545 0.00 0.00 35.67 3.58
110 111 2.033174 GCCGTAGTACTCTTCAGTAGCC 59.967 54.545 0.00 0.00 35.67 3.93
111 112 2.287373 CCGTAGTACTCTTCAGTAGCCG 59.713 54.545 0.00 0.00 35.67 5.52
112 113 2.286301 CGTAGTACTCTTCAGTAGCCGC 60.286 54.545 0.00 0.00 35.67 6.53
113 114 1.104630 AGTACTCTTCAGTAGCCGCC 58.895 55.000 0.00 0.00 35.67 6.13
114 115 0.248539 GTACTCTTCAGTAGCCGCCG 60.249 60.000 0.00 0.00 35.67 6.46
115 116 0.679002 TACTCTTCAGTAGCCGCCGT 60.679 55.000 0.00 0.00 33.62 5.68
116 117 1.226717 CTCTTCAGTAGCCGCCGTC 60.227 63.158 0.00 0.00 0.00 4.79
117 118 1.934220 CTCTTCAGTAGCCGCCGTCA 61.934 60.000 0.00 0.00 0.00 4.35
118 119 1.141881 CTTCAGTAGCCGCCGTCAT 59.858 57.895 0.00 0.00 0.00 3.06
119 120 0.384309 CTTCAGTAGCCGCCGTCATA 59.616 55.000 0.00 0.00 0.00 2.15
120 121 0.101759 TTCAGTAGCCGCCGTCATAC 59.898 55.000 0.00 0.00 0.00 2.39
121 122 0.750546 TCAGTAGCCGCCGTCATACT 60.751 55.000 0.00 0.00 0.00 2.12
122 123 0.317938 CAGTAGCCGCCGTCATACTC 60.318 60.000 0.00 0.00 0.00 2.59
123 124 1.370172 GTAGCCGCCGTCATACTCG 60.370 63.158 0.00 0.00 0.00 4.18
130 131 4.547905 CGTCATACTCGGCGCCGT 62.548 66.667 44.16 30.82 40.74 5.68
131 132 2.654404 GTCATACTCGGCGCCGTC 60.654 66.667 44.16 23.18 40.74 4.79
132 133 4.246206 TCATACTCGGCGCCGTCG 62.246 66.667 44.16 35.90 40.74 5.12
133 134 4.547905 CATACTCGGCGCCGTCGT 62.548 66.667 44.16 38.74 40.74 4.34
134 135 4.247612 ATACTCGGCGCCGTCGTC 62.248 66.667 44.16 9.08 40.74 4.20
160 161 2.121116 GATGAGGTCGACGTATGGTG 57.879 55.000 11.30 0.00 0.00 4.17
161 162 0.744874 ATGAGGTCGACGTATGGTGG 59.255 55.000 11.30 0.00 0.00 4.61
162 163 0.609957 TGAGGTCGACGTATGGTGGT 60.610 55.000 11.30 0.00 0.00 4.16
163 164 1.339920 TGAGGTCGACGTATGGTGGTA 60.340 52.381 11.30 0.00 0.00 3.25
164 165 1.332997 GAGGTCGACGTATGGTGGTAG 59.667 57.143 11.30 0.00 0.00 3.18
165 166 0.248784 GGTCGACGTATGGTGGTAGC 60.249 60.000 9.92 0.00 0.00 3.58
166 167 0.737219 GTCGACGTATGGTGGTAGCT 59.263 55.000 0.00 0.00 0.00 3.32
167 168 0.736636 TCGACGTATGGTGGTAGCTG 59.263 55.000 0.00 0.00 0.00 4.24
168 169 0.870307 CGACGTATGGTGGTAGCTGC 60.870 60.000 0.00 0.00 0.00 5.25
169 170 0.529992 GACGTATGGTGGTAGCTGCC 60.530 60.000 14.87 14.87 0.00 4.85
170 171 1.261938 ACGTATGGTGGTAGCTGCCA 61.262 55.000 20.78 20.78 36.64 4.92
171 172 0.530650 CGTATGGTGGTAGCTGCCAG 60.531 60.000 25.22 7.48 39.53 4.85
172 173 0.830648 GTATGGTGGTAGCTGCCAGA 59.169 55.000 25.22 14.24 39.53 3.86
173 174 1.123077 TATGGTGGTAGCTGCCAGAG 58.877 55.000 25.22 0.00 39.53 3.35
174 175 1.630126 ATGGTGGTAGCTGCCAGAGG 61.630 60.000 25.22 0.00 39.53 3.69
175 176 2.294078 GGTGGTAGCTGCCAGAGGT 61.294 63.158 25.22 0.00 39.53 3.85
176 177 1.078848 GTGGTAGCTGCCAGAGGTG 60.079 63.158 25.22 0.00 39.53 4.00
178 179 2.586792 GTAGCTGCCAGAGGTGGG 59.413 66.667 0.00 0.00 45.17 4.61
217 218 2.437359 GAGGCGCCTGCAACAGAT 60.437 61.111 38.41 6.10 45.35 2.90
228 229 3.121030 AACAGATGCCGTGCTCGC 61.121 61.111 1.89 0.00 35.54 5.03
231 232 4.393155 AGATGCCGTGCTCGCCAA 62.393 61.111 1.89 0.00 35.54 4.52
241 242 2.402572 GCTCGCCAAGGAAGAAGGC 61.403 63.158 0.00 0.00 44.89 4.35
243 244 2.034066 CGCCAAGGAAGAAGGCCA 59.966 61.111 5.01 0.00 45.56 5.36
275 276 4.070552 GCTCGACCCCAAGACGCT 62.071 66.667 0.00 0.00 0.00 5.07
283 284 1.658717 CCCAAGACGCTATCGCTCG 60.659 63.158 0.00 0.00 39.84 5.03
288 289 3.182472 GACGCTATCGCTCGGCTCA 62.182 63.158 0.00 0.00 39.84 4.26
328 329 2.593436 CGCCCCCACTTCGTGTTT 60.593 61.111 0.00 0.00 0.00 2.83
361 362 1.971167 GCGGGCATCTCACCAAACA 60.971 57.895 0.00 0.00 0.00 2.83
370 371 1.405105 TCTCACCAAACAAAGCAGCAC 59.595 47.619 0.00 0.00 0.00 4.40
372 373 0.175302 CACCAAACAAAGCAGCACCA 59.825 50.000 0.00 0.00 0.00 4.17
387 388 1.457346 CACCATTGAGTTCAGAGGCC 58.543 55.000 0.00 0.00 0.00 5.19
414 416 1.626654 GACGTGTCCATTGTCCGCTG 61.627 60.000 0.00 0.00 0.00 5.18
418 420 1.003839 GTCCATTGTCCGCTGTCCA 60.004 57.895 0.00 0.00 0.00 4.02
425 427 1.212751 GTCCGCTGTCCATTTTGCC 59.787 57.895 0.00 0.00 0.00 4.52
428 430 1.154225 CGCTGTCCATTTTGCCGAC 60.154 57.895 0.00 0.00 0.00 4.79
461 463 3.650369 GCGGAGGAAAGCGAACAA 58.350 55.556 0.00 0.00 0.00 2.83
481 483 4.852138 CAAGATTTGGGTCTTGCGATATG 58.148 43.478 3.97 0.00 45.89 1.78
482 484 4.422073 AGATTTGGGTCTTGCGATATGA 57.578 40.909 0.00 0.00 0.00 2.15
483 485 4.384056 AGATTTGGGTCTTGCGATATGAG 58.616 43.478 0.00 0.00 0.00 2.90
484 486 1.953559 TTGGGTCTTGCGATATGAGC 58.046 50.000 0.00 0.00 0.00 4.26
485 487 0.829990 TGGGTCTTGCGATATGAGCA 59.170 50.000 0.00 0.00 43.59 4.26
486 488 1.417517 TGGGTCTTGCGATATGAGCAT 59.582 47.619 3.62 0.00 44.74 3.79
487 489 1.802960 GGGTCTTGCGATATGAGCATG 59.197 52.381 3.62 6.37 44.74 4.06
489 491 1.136419 GTCTTGCGATATGAGCATGCG 60.136 52.381 13.01 0.00 44.74 4.73
490 492 0.452287 CTTGCGATATGAGCATGCGC 60.452 55.000 15.17 15.17 44.74 6.09
492 494 1.132029 GCGATATGAGCATGCGCAG 59.868 57.895 27.78 15.89 41.87 5.18
493 495 1.785951 CGATATGAGCATGCGCAGG 59.214 57.895 27.78 19.36 42.27 4.85
494 496 0.668401 CGATATGAGCATGCGCAGGA 60.668 55.000 28.37 18.84 42.27 3.86
495 497 1.516161 GATATGAGCATGCGCAGGAA 58.484 50.000 28.37 16.58 42.27 3.36
497 499 1.748950 TATGAGCATGCGCAGGAAAA 58.251 45.000 28.37 9.97 42.27 2.29
498 500 0.454600 ATGAGCATGCGCAGGAAAAG 59.545 50.000 28.37 7.30 42.27 2.27
499 501 1.515736 GAGCATGCGCAGGAAAAGC 60.516 57.895 28.37 16.82 42.27 3.51
515 532 6.529125 CAGGAAAAGCAAAAGCTGTACATATG 59.471 38.462 0.00 0.00 0.00 1.78
516 533 6.434028 AGGAAAAGCAAAAGCTGTACATATGA 59.566 34.615 10.38 0.00 0.00 2.15
518 535 5.567138 AAGCAAAAGCTGTACATATGACC 57.433 39.130 10.38 0.00 0.00 4.02
519 536 4.848357 AGCAAAAGCTGTACATATGACCT 58.152 39.130 10.38 0.00 0.00 3.85
521 538 4.035675 GCAAAAGCTGTACATATGACCTCC 59.964 45.833 10.38 0.00 0.00 4.30
522 539 5.185454 CAAAAGCTGTACATATGACCTCCA 58.815 41.667 10.38 0.00 0.00 3.86
523 540 4.408182 AAGCTGTACATATGACCTCCAC 57.592 45.455 10.38 0.00 0.00 4.02
535 555 2.753452 TGACCTCCACTCGTTCAGATAC 59.247 50.000 0.00 0.00 0.00 2.24
536 556 1.743958 ACCTCCACTCGTTCAGATACG 59.256 52.381 0.00 0.00 42.68 3.06
572 592 1.061485 GAGACAAAGAGCGTCCGTTC 58.939 55.000 0.00 0.00 33.70 3.95
622 646 0.320858 TCGTATTTGCGCCACTTGGA 60.321 50.000 4.18 0.00 37.39 3.53
623 647 0.096976 CGTATTTGCGCCACTTGGAG 59.903 55.000 4.18 0.00 37.39 3.86
624 648 0.451783 GTATTTGCGCCACTTGGAGG 59.548 55.000 4.18 0.00 37.39 4.30
625 649 0.326595 TATTTGCGCCACTTGGAGGA 59.673 50.000 4.18 0.00 37.39 3.71
657 692 3.047877 CGGGCCGTGTCAGTTTCC 61.048 66.667 19.97 0.00 0.00 3.13
661 696 2.030562 CCGTGTCAGTTTCCGCCT 59.969 61.111 0.00 0.00 0.00 5.52
662 697 1.597027 CCGTGTCAGTTTCCGCCTT 60.597 57.895 0.00 0.00 0.00 4.35
678 714 2.159747 CGCCTTAAAAAGTCGCCACTAC 60.160 50.000 0.00 0.00 30.14 2.73
680 716 3.251487 GCCTTAAAAAGTCGCCACTACAA 59.749 43.478 0.00 0.00 30.14 2.41
684 720 3.685836 AAAAGTCGCCACTACAACAAC 57.314 42.857 0.00 0.00 30.14 3.32
690 726 3.728718 GTCGCCACTACAACAACAAATTG 59.271 43.478 0.00 0.00 41.98 2.32
691 727 8.283620 AAGTCGCCACTACAACAACAAATTGT 62.284 38.462 0.00 0.00 40.75 2.71
692 728 9.651195 AAGTCGCCACTACAACAACAAATTGTT 62.651 37.037 5.41 5.41 44.89 2.83
948 998 3.195698 GCGCGAGAACCCATCACC 61.196 66.667 12.10 0.00 0.00 4.02
949 999 2.511600 CGCGAGAACCCATCACCC 60.512 66.667 0.00 0.00 0.00 4.61
1018 1068 3.569210 TGGACCACCACCAGCAGG 61.569 66.667 0.00 0.00 41.77 4.85
1019 1069 4.351054 GGACCACCACCAGCAGGG 62.351 72.222 0.00 0.00 44.81 4.45
1125 1195 4.899239 GCGCCCTCCTGGATGTCG 62.899 72.222 0.00 0.00 35.39 4.35
1289 1362 2.203714 CCCCTCCTCCTCCGGATC 60.204 72.222 3.57 0.00 31.43 3.36
1290 1363 2.784654 CCCCTCCTCCTCCGGATCT 61.785 68.421 3.57 0.00 31.43 2.75
1291 1364 1.532794 CCCTCCTCCTCCGGATCTG 60.533 68.421 3.57 0.00 31.43 2.90
1588 1670 0.250597 GTCGCCCTACAAGGTTGGTT 60.251 55.000 0.00 0.00 31.93 3.67
1590 1672 1.241315 CGCCCTACAAGGTTGGTTGG 61.241 60.000 0.00 0.00 31.93 3.77
1591 1673 0.178973 GCCCTACAAGGTTGGTTGGT 60.179 55.000 0.00 0.00 31.93 3.67
1592 1674 1.905637 CCCTACAAGGTTGGTTGGTC 58.094 55.000 0.00 0.00 31.93 4.02
1593 1675 1.546998 CCCTACAAGGTTGGTTGGTCC 60.547 57.143 0.00 0.00 31.93 4.46
1657 1745 5.126779 GTGTGGGGAATTCCTCTTTATCTC 58.873 45.833 24.86 4.58 37.41 2.75
1704 1792 6.020678 CGATTTTTCCTCATAATTTTCACGCC 60.021 38.462 0.00 0.00 0.00 5.68
1705 1793 5.975693 TTTTCCTCATAATTTTCACGCCT 57.024 34.783 0.00 0.00 0.00 5.52
1706 1794 7.455641 TTTTTCCTCATAATTTTCACGCCTA 57.544 32.000 0.00 0.00 0.00 3.93
1707 1795 7.455641 TTTTCCTCATAATTTTCACGCCTAA 57.544 32.000 0.00 0.00 0.00 2.69
1708 1796 6.431198 TTCCTCATAATTTTCACGCCTAAC 57.569 37.500 0.00 0.00 0.00 2.34
1709 1797 5.741011 TCCTCATAATTTTCACGCCTAACT 58.259 37.500 0.00 0.00 0.00 2.24
1710 1798 6.880484 TCCTCATAATTTTCACGCCTAACTA 58.120 36.000 0.00 0.00 0.00 2.24
1942 2033 7.536622 CACGATTTCTTTTCTGAGAATTGAAGG 59.463 37.037 0.00 1.28 35.70 3.46
1943 2034 7.025963 CGATTTCTTTTCTGAGAATTGAAGGG 58.974 38.462 0.00 0.00 35.70 3.95
1953 2044 5.275630 TGAGAATTGAAGGGAGAGAGATCA 58.724 41.667 0.00 0.00 0.00 2.92
2200 2291 9.986833 AAAGCTTCAATTCAAACACAAAATAAC 57.013 25.926 0.00 0.00 0.00 1.89
2307 2410 1.282157 GCAGGGTACTTTCATCAGGGT 59.718 52.381 0.00 0.00 0.00 4.34
2363 2470 9.788960 GGTTATACCAATTTCTGCTAGAAAAAG 57.211 33.333 13.04 9.49 41.68 2.27
2367 2474 6.739112 ACCAATTTCTGCTAGAAAAAGTCAC 58.261 36.000 13.04 0.00 46.08 3.67
2435 2542 6.563222 TGGGGAAACGATAAAGTTTTGTAG 57.437 37.500 0.00 0.00 43.54 2.74
2445 2552 9.886132 ACGATAAAGTTTTGTAGATAACCTGAT 57.114 29.630 0.00 0.00 0.00 2.90
2616 2742 0.447801 GGGATGCAACACGCTGTAAG 59.552 55.000 0.00 0.00 43.06 2.34
2697 2823 1.230635 TGCTTTCTTCTGGCAGTCGC 61.231 55.000 15.27 9.43 37.44 5.19
2700 2826 0.037326 TTTCTTCTGGCAGTCGCGAT 60.037 50.000 14.06 0.00 39.92 4.58
2806 3479 6.931281 CCCCTGACTATTCATATAATATGGCG 59.069 42.308 0.00 0.00 0.00 5.69
2818 3491 9.797556 TCATATAATATGGCGTGTTATGTACTC 57.202 33.333 16.27 0.00 0.00 2.59
2819 3492 9.031360 CATATAATATGGCGTGTTATGTACTCC 57.969 37.037 16.27 0.00 0.00 3.85
2820 3493 2.614829 ATGGCGTGTTATGTACTCCC 57.385 50.000 0.00 0.00 0.00 4.30
2821 3494 1.563924 TGGCGTGTTATGTACTCCCT 58.436 50.000 0.00 0.00 0.00 4.20
2822 3495 1.479323 TGGCGTGTTATGTACTCCCTC 59.521 52.381 0.00 0.00 0.00 4.30
2823 3496 1.202498 GGCGTGTTATGTACTCCCTCC 60.202 57.143 0.00 0.00 0.00 4.30
2824 3497 1.535437 GCGTGTTATGTACTCCCTCCG 60.535 57.143 0.00 0.00 0.00 4.63
2825 3498 1.747355 CGTGTTATGTACTCCCTCCGT 59.253 52.381 0.00 0.00 0.00 4.69
2826 3499 2.945008 CGTGTTATGTACTCCCTCCGTA 59.055 50.000 0.00 0.00 0.00 4.02
2827 3500 3.378112 CGTGTTATGTACTCCCTCCGTAA 59.622 47.826 0.00 0.00 0.00 3.18
2828 3501 4.142403 CGTGTTATGTACTCCCTCCGTAAA 60.142 45.833 0.00 0.00 0.00 2.01
2829 3502 5.346522 GTGTTATGTACTCCCTCCGTAAAG 58.653 45.833 0.00 0.00 0.00 1.85
2830 3503 5.126061 GTGTTATGTACTCCCTCCGTAAAGA 59.874 44.000 0.00 0.00 0.00 2.52
2831 3504 5.716228 TGTTATGTACTCCCTCCGTAAAGAA 59.284 40.000 0.00 0.00 0.00 2.52
2832 3505 6.211184 TGTTATGTACTCCCTCCGTAAAGAAA 59.789 38.462 0.00 0.00 0.00 2.52
2833 3506 5.952347 ATGTACTCCCTCCGTAAAGAAAT 57.048 39.130 0.00 0.00 0.00 2.17
2834 3507 8.416329 GTTATGTACTCCCTCCGTAAAGAAATA 58.584 37.037 0.00 0.00 0.00 1.40
2835 3508 7.613551 ATGTACTCCCTCCGTAAAGAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
2836 3509 8.716674 ATGTACTCCCTCCGTAAAGAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
2837 3510 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
2838 3511 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
2839 3512 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2840 3513 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2841 3514 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2842 3515 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2843 3516 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2844 3517 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2845 3518 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2846 3519 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2847 3520 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2848 3521 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2860 3533 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2861 3534 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2875 3548 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2876 3549 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2877 3550 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2878 3551 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2880 3553 9.733219 AAAGTAGTGATCTAAACGCTCTTATAC 57.267 33.333 0.00 0.00 0.00 1.47
2881 3554 8.680039 AGTAGTGATCTAAACGCTCTTATACT 57.320 34.615 0.00 0.00 0.00 2.12
2882 3555 9.122779 AGTAGTGATCTAAACGCTCTTATACTT 57.877 33.333 0.00 0.00 0.00 2.24
2883 3556 9.733219 GTAGTGATCTAAACGCTCTTATACTTT 57.267 33.333 0.00 0.00 0.00 2.66
2885 3558 9.953697 AGTGATCTAAACGCTCTTATACTTTAG 57.046 33.333 0.00 0.00 0.00 1.85
2886 3559 9.733219 GTGATCTAAACGCTCTTATACTTTAGT 57.267 33.333 0.00 0.00 0.00 2.24
2887 3560 9.731819 TGATCTAAACGCTCTTATACTTTAGTG 57.268 33.333 0.00 0.00 0.00 2.74
2888 3561 9.947669 GATCTAAACGCTCTTATACTTTAGTGA 57.052 33.333 0.00 0.00 0.00 3.41
2890 3563 9.947669 TCTAAACGCTCTTATACTTTAGTGATC 57.052 33.333 0.00 0.00 0.00 2.92
2891 3564 9.953697 CTAAACGCTCTTATACTTTAGTGATCT 57.046 33.333 0.00 0.00 0.00 2.75
2895 3568 9.733219 ACGCTCTTATACTTTAGTGATCTAAAC 57.267 33.333 0.00 0.00 40.05 2.01
2896 3569 8.893884 CGCTCTTATACTTTAGTGATCTAAACG 58.106 37.037 0.00 0.00 40.05 3.60
2897 3570 8.692615 GCTCTTATACTTTAGTGATCTAAACGC 58.307 37.037 0.00 0.00 40.05 4.84
2898 3571 9.953697 CTCTTATACTTTAGTGATCTAAACGCT 57.046 33.333 0.00 0.00 40.05 5.07
2899 3572 9.947669 TCTTATACTTTAGTGATCTAAACGCTC 57.052 33.333 0.00 0.00 40.05 5.03
2900 3573 9.731819 CTTATACTTTAGTGATCTAAACGCTCA 57.268 33.333 0.00 0.00 40.05 4.26
2905 3578 9.601217 ACTTTAGTGATCTAAACGCTCATATTT 57.399 29.630 0.00 0.00 40.05 1.40
2907 3580 9.817809 TTTAGTGATCTAAACGCTCATATTTCT 57.182 29.630 0.00 0.00 40.05 2.52
2908 3581 9.817809 TTAGTGATCTAAACGCTCATATTTCTT 57.182 29.630 0.00 0.00 33.79 2.52
2909 3582 8.723942 AGTGATCTAAACGCTCATATTTCTTT 57.276 30.769 0.00 0.00 0.00 2.52
2910 3583 9.817809 AGTGATCTAAACGCTCATATTTCTTTA 57.182 29.630 0.00 0.00 0.00 1.85
2911 3584 9.851043 GTGATCTAAACGCTCATATTTCTTTAC 57.149 33.333 0.00 0.00 0.00 2.01
2912 3585 8.752254 TGATCTAAACGCTCATATTTCTTTACG 58.248 33.333 0.00 0.00 0.00 3.18
2913 3586 7.459394 TCTAAACGCTCATATTTCTTTACGG 57.541 36.000 0.00 0.00 0.00 4.02
2914 3587 7.259882 TCTAAACGCTCATATTTCTTTACGGA 58.740 34.615 0.00 0.00 0.00 4.69
2915 3588 5.968387 AACGCTCATATTTCTTTACGGAG 57.032 39.130 0.00 0.00 0.00 4.63
2916 3589 4.369182 ACGCTCATATTTCTTTACGGAGG 58.631 43.478 0.00 0.00 0.00 4.30
2917 3590 3.741344 CGCTCATATTTCTTTACGGAGGG 59.259 47.826 0.00 0.00 0.00 4.30
2918 3591 4.500887 CGCTCATATTTCTTTACGGAGGGA 60.501 45.833 0.00 0.00 36.36 4.20
2919 3592 4.991687 GCTCATATTTCTTTACGGAGGGAG 59.008 45.833 0.00 0.00 0.00 4.30
2920 3593 5.453480 GCTCATATTTCTTTACGGAGGGAGT 60.453 44.000 0.00 0.00 0.00 3.85
2921 3594 6.239232 GCTCATATTTCTTTACGGAGGGAGTA 60.239 42.308 0.00 0.00 0.00 2.59
2922 3595 7.047460 TCATATTTCTTTACGGAGGGAGTAC 57.953 40.000 0.00 0.00 0.00 2.73
2941 3614 8.837389 GGGAGTACATCATTACAATCTTTTACC 58.163 37.037 0.00 0.00 0.00 2.85
2942 3615 8.548721 GGAGTACATCATTACAATCTTTTACCG 58.451 37.037 0.00 0.00 0.00 4.02
2945 3618 7.316544 ACATCATTACAATCTTTTACCGGTC 57.683 36.000 12.40 0.00 0.00 4.79
2953 3626 4.569719 ATCTTTTACCGGTCTGTCCAAT 57.430 40.909 12.40 0.00 35.57 3.16
3065 3738 4.439057 TCAAGTGGTCTTATGATAACCGC 58.561 43.478 0.00 0.00 42.59 5.68
3135 3808 7.174946 CCATAAGTTTCCATCACAGTAAAGTGT 59.825 37.037 0.00 0.00 40.37 3.55
3159 3832 4.858850 TGGCACATGGTATTCAAGATCTT 58.141 39.130 0.88 0.88 0.00 2.40
3519 4197 9.784376 AGTATAATCATATCTACCCTTAAGCCA 57.216 33.333 0.00 0.00 0.00 4.75
3546 4224 3.117663 ACTCTTGGAACCTTTTAGCACCA 60.118 43.478 0.00 0.00 0.00 4.17
3579 4257 6.422333 TGAATACTTCAGCCATACCAATTCA 58.578 36.000 0.00 0.00 34.08 2.57
3599 4277 7.770801 ATTCAACTAGTTTTCCTGCAAAAAC 57.229 32.000 15.78 15.78 45.33 2.43
3692 4370 6.377327 AATATAATGCAACCGAAGTCCTTG 57.623 37.500 0.00 0.00 0.00 3.61
3776 4454 7.681939 TGGAAACAGTCTATGGACATTTTAC 57.318 36.000 12.16 10.61 44.36 2.01
3895 4574 5.045213 TGCTTATGTAGAATTGTGGAAGGGA 60.045 40.000 0.00 0.00 0.00 4.20
3913 4594 5.957771 AGGGATAGAGTTAAACATGCTGA 57.042 39.130 0.00 0.00 0.00 4.26
4069 4750 4.399303 GTCAAAGGTATGCCACAAGCTTAT 59.601 41.667 0.00 0.00 44.23 1.73
4070 4751 4.640201 TCAAAGGTATGCCACAAGCTTATC 59.360 41.667 0.00 0.00 44.23 1.75
4071 4752 2.838736 AGGTATGCCACAAGCTTATCG 58.161 47.619 0.00 0.00 44.23 2.92
4081 4762 3.926527 CACAAGCTTATCGTGTAGCTCAA 59.073 43.478 0.00 0.00 46.53 3.02
4095 4776 6.089551 CGTGTAGCTCAATTATACCATACTGC 59.910 42.308 0.00 0.00 0.00 4.40
4098 4779 5.555017 AGCTCAATTATACCATACTGCCTG 58.445 41.667 0.00 0.00 0.00 4.85
4107 4789 3.084039 ACCATACTGCCTGTCATTGTTG 58.916 45.455 0.00 0.00 0.00 3.33
4145 4829 4.222810 TCTCTCTATTTGTAGCTTGCCACA 59.777 41.667 0.00 0.00 0.00 4.17
4211 4895 5.350504 CTGATGGACAGGTGAAATACTCT 57.649 43.478 0.00 0.00 42.39 3.24
4279 4965 4.073293 TCTTCTTCTGTTTGAGGTGTCC 57.927 45.455 0.00 0.00 0.00 4.02
4370 5059 2.202453 GACGAGACGCTCCGGTTC 60.202 66.667 0.00 0.00 0.00 3.62
4405 5094 0.252558 TCTCCCAAGTCCCAGGTACC 60.253 60.000 2.73 2.73 0.00 3.34
4406 5095 0.546747 CTCCCAAGTCCCAGGTACCA 60.547 60.000 15.94 0.00 0.00 3.25
4407 5096 0.120377 TCCCAAGTCCCAGGTACCAT 59.880 55.000 15.94 0.00 0.00 3.55
4411 5100 3.112263 CCAAGTCCCAGGTACCATCTTA 58.888 50.000 15.94 0.00 0.00 2.10
4421 5111 6.543831 CCCAGGTACCATCTTAATCTTGAAAG 59.456 42.308 15.94 0.00 0.00 2.62
4439 5129 8.215050 TCTTGAAAGTATGGTTTTCCTGTCTAA 58.785 33.333 0.00 0.00 41.38 2.10
4441 5131 8.161699 TGAAAGTATGGTTTTCCTGTCTAAAC 57.838 34.615 0.00 0.00 41.38 2.01
4442 5132 7.776030 TGAAAGTATGGTTTTCCTGTCTAAACA 59.224 33.333 0.00 0.00 41.38 2.83
4445 5135 8.706322 AGTATGGTTTTCCTGTCTAAACAAAT 57.294 30.769 0.00 0.00 41.38 2.32
4461 5151 0.539438 AAATTCCACTTCAGGCGGCA 60.539 50.000 13.08 0.00 0.00 5.69
4463 5153 0.749454 ATTCCACTTCAGGCGGCATC 60.749 55.000 13.08 0.00 0.00 3.91
4534 5228 1.945394 AGCATTGGAGCGACATCATTC 59.055 47.619 0.00 0.00 40.15 2.67
4556 5250 1.982660 TAGGAGCTACATCCGGTGAG 58.017 55.000 0.00 0.00 44.65 3.51
4572 5266 3.169733 GGTGAGTCGACGAAATGTAGTC 58.830 50.000 10.46 0.00 0.00 2.59
4573 5267 3.365666 GGTGAGTCGACGAAATGTAGTCA 60.366 47.826 10.46 1.93 37.23 3.41
4574 5268 4.413087 GTGAGTCGACGAAATGTAGTCAT 58.587 43.478 10.46 0.00 37.23 3.06
4591 5285 3.921021 AGTCATTTCGTCGAGCTTGTAAG 59.079 43.478 0.00 0.00 0.00 2.34
4607 5301 3.940319 TGTAAGGTTATTGCGGCAAGTA 58.060 40.909 21.11 8.40 0.00 2.24
4703 5397 3.134127 GATTGCACGGCAGGGGAC 61.134 66.667 0.00 0.00 40.61 4.46
4801 5495 0.749454 AAGGCGGGAGATGTTCATGC 60.749 55.000 0.00 0.00 0.00 4.06
4802 5496 2.537560 GGCGGGAGATGTTCATGCG 61.538 63.158 0.00 0.00 0.00 4.73
4835 5562 3.403558 GCCACACTCCCTCCTCCC 61.404 72.222 0.00 0.00 0.00 4.30
4868 5604 0.962356 ATTGGAACTGCCCTGCGAAG 60.962 55.000 0.00 0.00 34.97 3.79
4883 5619 2.300623 CGAAGCAAAGTGTTCCTTCG 57.699 50.000 7.16 7.16 46.78 3.79
4923 5659 4.559153 AGCCCTTTTGATTTCATTCGTTG 58.441 39.130 0.00 0.00 0.00 4.10
4932 5668 7.448588 TTGATTTCATTCGTTGTGTTCTTTG 57.551 32.000 0.00 0.00 0.00 2.77
4935 5671 2.034053 TCATTCGTTGTGTTCTTTGGCC 59.966 45.455 0.00 0.00 0.00 5.36
4937 5673 1.657181 CGTTGTGTTCTTTGGCCGC 60.657 57.895 0.00 0.00 0.00 6.53
4962 5698 7.169813 GCAAATTCTTCTTGTTTTAGGAACTGG 59.830 37.037 0.00 0.00 41.52 4.00
4963 5699 7.898014 AATTCTTCTTGTTTTAGGAACTGGT 57.102 32.000 0.00 0.00 41.52 4.00
4964 5700 7.898014 ATTCTTCTTGTTTTAGGAACTGGTT 57.102 32.000 0.00 0.00 41.52 3.67
4965 5701 8.990163 ATTCTTCTTGTTTTAGGAACTGGTTA 57.010 30.769 0.00 0.00 41.52 2.85
4966 5702 7.797038 TCTTCTTGTTTTAGGAACTGGTTAC 57.203 36.000 0.00 0.00 41.52 2.50
4967 5703 7.571025 TCTTCTTGTTTTAGGAACTGGTTACT 58.429 34.615 3.58 3.58 41.52 2.24
4968 5704 7.497909 TCTTCTTGTTTTAGGAACTGGTTACTG 59.502 37.037 8.34 0.00 41.52 2.74
4969 5705 6.891388 TCTTGTTTTAGGAACTGGTTACTGA 58.109 36.000 8.34 0.00 41.52 3.41
4970 5706 7.514721 TCTTGTTTTAGGAACTGGTTACTGAT 58.485 34.615 8.34 0.00 41.52 2.90
4971 5707 7.444183 TCTTGTTTTAGGAACTGGTTACTGATG 59.556 37.037 8.34 0.00 41.52 3.07
4978 5714 7.496346 AGGAACTGGTTACTGATGAGAAATA 57.504 36.000 0.00 0.00 37.18 1.40
4980 5716 8.552296 AGGAACTGGTTACTGATGAGAAATATT 58.448 33.333 0.00 0.00 37.18 1.28
4994 5731 5.116069 AGAAATATTTTGGCGTGTCGTTT 57.884 34.783 1.43 0.00 0.00 3.60
4998 5735 1.088306 TTTTGGCGTGTCGTTTCTGT 58.912 45.000 0.00 0.00 0.00 3.41
5008 5745 3.489785 GTGTCGTTTCTGTACTTGACTGG 59.510 47.826 0.00 0.00 0.00 4.00
5015 5752 6.590292 CGTTTCTGTACTTGACTGGTGATATT 59.410 38.462 0.00 0.00 0.00 1.28
5040 5839 2.948315 GCCTGTGGAGGAATTCAGAATC 59.052 50.000 7.93 0.00 42.93 2.52
5060 5859 1.150081 GGCCATGTCCTCTGATGGG 59.850 63.158 0.00 0.00 39.75 4.00
5063 5862 1.144503 GCCATGTCCTCTGATGGGATT 59.855 52.381 0.00 0.00 39.75 3.01
5072 5871 3.181467 CCTCTGATGGGATTCAGTGAGTC 60.181 52.174 7.09 7.09 43.02 3.36
5083 5882 6.378280 GGGATTCAGTGAGTCAAAATTACCAT 59.622 38.462 16.52 0.00 0.00 3.55
5099 5898 2.446435 ACCATTCTGGGTGAAAATCCG 58.554 47.619 0.00 0.00 43.37 4.18
5111 5910 4.100529 GTGAAAATCCGCATGTTGATCAG 58.899 43.478 0.00 0.00 0.00 2.90
5171 5970 1.531149 GTTGTGTCCGTGAATGTGAGG 59.469 52.381 0.00 0.00 0.00 3.86
5321 6132 6.300703 ACACCAGTACCTATCTATCTGTCTC 58.699 44.000 0.00 0.00 0.00 3.36
5393 6204 2.159037 CAGTGCACAGCTAACAGTGATG 59.841 50.000 21.04 0.00 36.98 3.07
5408 6219 0.032912 TGATGCTCCATGGCCATTGT 60.033 50.000 17.92 0.00 0.00 2.71
5410 6221 2.309613 GATGCTCCATGGCCATTGTAA 58.690 47.619 17.92 3.42 0.00 2.41
5423 6234 3.429410 GCCATTGTAAAGGAAGATGGTGC 60.429 47.826 0.00 0.00 39.51 5.01
5439 6250 1.679680 GGTGCATGATTGGATCACTGG 59.320 52.381 0.00 0.00 43.01 4.00
5440 6251 2.646930 GTGCATGATTGGATCACTGGA 58.353 47.619 0.00 0.00 43.01 3.86
5455 6266 0.539051 CTGGAGAAGTAGCACAGGGG 59.461 60.000 0.00 0.00 0.00 4.79
5457 6268 1.222113 GAGAAGTAGCACAGGGGCC 59.778 63.158 0.00 0.00 0.00 5.80
5458 6269 2.125106 GAAGTAGCACAGGGGCCG 60.125 66.667 0.00 0.00 0.00 6.13
5510 6321 3.735746 GCTACTGGCATGAACAACAAAAC 59.264 43.478 0.00 0.00 41.35 2.43
5512 6323 2.126467 CTGGCATGAACAACAAAACCG 58.874 47.619 0.00 0.00 0.00 4.44
5517 6328 4.093556 GGCATGAACAACAAAACCGAAAAA 59.906 37.500 0.00 0.00 0.00 1.94
5548 6359 9.793252 AGAAAAACATTAAGGAATCATGATTCG 57.207 29.630 32.05 22.73 46.11 3.34
5549 6360 9.573133 GAAAAACATTAAGGAATCATGATTCGT 57.427 29.630 32.05 30.64 46.11 3.85
5550 6361 8.915871 AAAACATTAAGGAATCATGATTCGTG 57.084 30.769 33.02 26.52 46.11 4.35
5551 6362 6.624352 ACATTAAGGAATCATGATTCGTGG 57.376 37.500 33.02 25.48 46.11 4.94
5552 6363 6.356556 ACATTAAGGAATCATGATTCGTGGA 58.643 36.000 33.02 25.99 46.11 4.02
5553 6364 6.828273 ACATTAAGGAATCATGATTCGTGGAA 59.172 34.615 33.02 28.81 46.11 3.53
5554 6365 6.925610 TTAAGGAATCATGATTCGTGGAAG 57.074 37.500 33.02 0.00 46.11 3.46
5555 6366 4.494091 AGGAATCATGATTCGTGGAAGT 57.506 40.909 32.27 14.31 46.11 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.622549 TGTTAAACTTGATTTTTGTGGACGT 58.377 32.000 0.00 0.00 0.00 4.34
52 53 8.923683 GCGGGACTATCTAGTTTTATTTATGTC 58.076 37.037 0.00 0.00 36.50 3.06
53 54 7.876582 GGCGGGACTATCTAGTTTTATTTATGT 59.123 37.037 0.00 0.00 36.50 2.29
54 55 7.063074 CGGCGGGACTATCTAGTTTTATTTATG 59.937 40.741 0.00 0.00 36.50 1.90
55 56 7.095270 CGGCGGGACTATCTAGTTTTATTTAT 58.905 38.462 0.00 0.00 36.50 1.40
56 57 6.449698 CGGCGGGACTATCTAGTTTTATTTA 58.550 40.000 0.00 0.00 36.50 1.40
57 58 5.295152 CGGCGGGACTATCTAGTTTTATTT 58.705 41.667 0.00 0.00 36.50 1.40
58 59 4.798593 GCGGCGGGACTATCTAGTTTTATT 60.799 45.833 9.78 0.00 36.50 1.40
59 60 3.305881 GCGGCGGGACTATCTAGTTTTAT 60.306 47.826 9.78 0.00 36.50 1.40
60 61 2.035066 GCGGCGGGACTATCTAGTTTTA 59.965 50.000 9.78 0.00 36.50 1.52
61 62 1.202498 GCGGCGGGACTATCTAGTTTT 60.202 52.381 9.78 0.00 36.50 2.43
62 63 0.388294 GCGGCGGGACTATCTAGTTT 59.612 55.000 9.78 0.00 36.50 2.66
63 64 1.461911 GGCGGCGGGACTATCTAGTT 61.462 60.000 9.78 0.00 36.50 2.24
64 65 1.902432 GGCGGCGGGACTATCTAGT 60.902 63.158 9.78 0.00 39.71 2.57
65 66 2.963371 GGCGGCGGGACTATCTAG 59.037 66.667 9.78 0.00 0.00 2.43
66 67 2.981909 CGGCGGCGGGACTATCTA 60.982 66.667 25.36 0.00 0.00 1.98
83 84 1.404748 GAAGAGTACTACGGCCTCACC 59.595 57.143 0.00 0.00 0.00 4.02
84 85 2.089980 TGAAGAGTACTACGGCCTCAC 58.910 52.381 0.00 0.00 0.00 3.51
85 86 2.290768 ACTGAAGAGTACTACGGCCTCA 60.291 50.000 0.00 0.00 0.00 3.86
86 87 2.367486 ACTGAAGAGTACTACGGCCTC 58.633 52.381 0.00 0.00 0.00 4.70
87 88 2.510928 ACTGAAGAGTACTACGGCCT 57.489 50.000 0.00 0.00 0.00 5.19
88 89 2.033174 GCTACTGAAGAGTACTACGGCC 59.967 54.545 0.00 0.00 33.21 6.13
89 90 2.033174 GGCTACTGAAGAGTACTACGGC 59.967 54.545 0.00 0.00 33.21 5.68
90 91 2.287373 CGGCTACTGAAGAGTACTACGG 59.713 54.545 0.00 0.00 33.21 4.02
91 92 2.286301 GCGGCTACTGAAGAGTACTACG 60.286 54.545 0.00 0.00 33.21 3.51
92 93 2.033174 GGCGGCTACTGAAGAGTACTAC 59.967 54.545 0.00 0.00 33.21 2.73
93 94 2.295885 GGCGGCTACTGAAGAGTACTA 58.704 52.381 0.00 0.00 33.21 1.82
94 95 1.104630 GGCGGCTACTGAAGAGTACT 58.895 55.000 0.00 0.00 33.21 2.73
95 96 0.248539 CGGCGGCTACTGAAGAGTAC 60.249 60.000 7.61 0.00 33.21 2.73
96 97 0.679002 ACGGCGGCTACTGAAGAGTA 60.679 55.000 13.24 0.00 33.21 2.59
97 98 1.935327 GACGGCGGCTACTGAAGAGT 61.935 60.000 13.24 0.00 36.07 3.24
98 99 1.226717 GACGGCGGCTACTGAAGAG 60.227 63.158 13.24 0.00 0.00 2.85
99 100 1.320344 ATGACGGCGGCTACTGAAGA 61.320 55.000 16.45 0.00 0.00 2.87
100 101 0.384309 TATGACGGCGGCTACTGAAG 59.616 55.000 16.45 0.00 0.00 3.02
101 102 0.101759 GTATGACGGCGGCTACTGAA 59.898 55.000 16.45 0.00 0.00 3.02
102 103 0.750546 AGTATGACGGCGGCTACTGA 60.751 55.000 16.45 0.00 0.00 3.41
103 104 0.317938 GAGTATGACGGCGGCTACTG 60.318 60.000 23.26 0.00 0.00 2.74
104 105 1.783031 CGAGTATGACGGCGGCTACT 61.783 60.000 16.45 18.65 0.00 2.57
105 106 1.370172 CGAGTATGACGGCGGCTAC 60.370 63.158 16.45 13.99 0.00 3.58
106 107 2.549198 CCGAGTATGACGGCGGCTA 61.549 63.158 16.45 0.00 43.74 3.93
107 108 3.900892 CCGAGTATGACGGCGGCT 61.901 66.667 16.45 1.39 43.74 5.52
141 142 1.269102 CCACCATACGTCGACCTCATC 60.269 57.143 10.58 0.00 0.00 2.92
142 143 0.744874 CCACCATACGTCGACCTCAT 59.255 55.000 10.58 0.00 0.00 2.90
143 144 0.609957 ACCACCATACGTCGACCTCA 60.610 55.000 10.58 0.00 0.00 3.86
144 145 1.332997 CTACCACCATACGTCGACCTC 59.667 57.143 10.58 0.00 0.00 3.85
145 146 1.386533 CTACCACCATACGTCGACCT 58.613 55.000 10.58 0.34 0.00 3.85
146 147 0.248784 GCTACCACCATACGTCGACC 60.249 60.000 10.58 0.00 0.00 4.79
147 148 0.737219 AGCTACCACCATACGTCGAC 59.263 55.000 5.18 5.18 0.00 4.20
148 149 0.736636 CAGCTACCACCATACGTCGA 59.263 55.000 0.00 0.00 0.00 4.20
149 150 0.870307 GCAGCTACCACCATACGTCG 60.870 60.000 0.00 0.00 0.00 5.12
150 151 0.529992 GGCAGCTACCACCATACGTC 60.530 60.000 0.00 0.00 0.00 4.34
151 152 1.261938 TGGCAGCTACCACCATACGT 61.262 55.000 0.00 0.00 33.75 3.57
152 153 0.530650 CTGGCAGCTACCACCATACG 60.531 60.000 0.00 0.00 35.33 3.06
153 154 0.830648 TCTGGCAGCTACCACCATAC 59.169 55.000 10.34 0.00 35.33 2.39
154 155 1.123077 CTCTGGCAGCTACCACCATA 58.877 55.000 10.34 0.00 35.33 2.74
155 156 1.630126 CCTCTGGCAGCTACCACCAT 61.630 60.000 10.34 0.00 35.33 3.55
156 157 2.293318 CCTCTGGCAGCTACCACCA 61.293 63.158 10.34 0.00 35.33 4.17
157 158 2.294078 ACCTCTGGCAGCTACCACC 61.294 63.158 10.34 0.00 35.33 4.61
158 159 1.078848 CACCTCTGGCAGCTACCAC 60.079 63.158 10.34 0.00 35.33 4.16
159 160 2.293318 CCACCTCTGGCAGCTACCA 61.293 63.158 10.34 5.32 38.29 3.25
160 161 2.586792 CCACCTCTGGCAGCTACC 59.413 66.667 10.34 0.00 0.00 3.18
161 162 2.586792 CCCACCTCTGGCAGCTAC 59.413 66.667 10.34 0.00 36.00 3.58
199 200 3.984193 ATCTGTTGCAGGCGCCTCC 62.984 63.158 30.29 21.18 37.32 4.30
200 201 2.437359 ATCTGTTGCAGGCGCCTC 60.437 61.111 30.29 21.68 37.32 4.70
201 202 2.749044 CATCTGTTGCAGGCGCCT 60.749 61.111 27.08 27.08 37.32 5.52
210 211 2.780643 CGAGCACGGCATCTGTTG 59.219 61.111 0.00 0.00 35.72 3.33
211 212 3.121030 GCGAGCACGGCATCTGTT 61.121 61.111 5.52 0.00 40.15 3.16
221 222 1.301677 CCTTCTTCCTTGGCGAGCAC 61.302 60.000 0.00 0.00 0.00 4.40
228 229 2.335712 GCGTGGCCTTCTTCCTTGG 61.336 63.158 3.32 0.00 0.00 3.61
229 230 2.335712 GGCGTGGCCTTCTTCCTTG 61.336 63.158 3.32 0.00 46.69 3.61
341 342 3.936772 TTTGGTGAGATGCCCGCCC 62.937 63.158 0.00 0.00 33.41 6.13
361 362 2.295349 CTGAACTCAATGGTGCTGCTTT 59.705 45.455 0.00 0.00 0.00 3.51
370 371 0.622665 AGGGCCTCTGAACTCAATGG 59.377 55.000 0.00 0.00 0.00 3.16
372 373 1.280421 GACAGGGCCTCTGAACTCAAT 59.720 52.381 23.24 3.72 46.18 2.57
399 400 1.003839 GGACAGCGGACAATGGACA 60.004 57.895 0.00 0.00 0.00 4.02
406 407 1.523154 GGCAAAATGGACAGCGGACA 61.523 55.000 0.00 0.00 0.00 4.02
410 412 1.154225 GTCGGCAAAATGGACAGCG 60.154 57.895 0.00 0.00 0.00 5.18
414 416 0.676736 TTTGGGTCGGCAAAATGGAC 59.323 50.000 0.00 0.00 0.00 4.02
418 420 1.267533 GTACGTTTGGGTCGGCAAAAT 59.732 47.619 0.00 0.00 0.00 1.82
425 427 2.007881 CGTTTTGTACGTTTGGGTCG 57.992 50.000 0.00 0.00 45.14 4.79
450 452 3.253432 AGACCCAAATCTTGTTCGCTTTC 59.747 43.478 0.00 0.00 0.00 2.62
474 476 1.132029 CTGCGCATGCTCATATCGC 59.868 57.895 12.24 10.29 43.34 4.58
477 479 1.971481 TTTCCTGCGCATGCTCATAT 58.029 45.000 12.24 0.00 43.34 1.78
478 480 1.672363 CTTTTCCTGCGCATGCTCATA 59.328 47.619 12.24 2.32 43.34 2.15
479 481 0.454600 CTTTTCCTGCGCATGCTCAT 59.545 50.000 12.24 0.00 43.34 2.90
480 482 1.878070 CTTTTCCTGCGCATGCTCA 59.122 52.632 12.24 13.72 43.34 4.26
481 483 1.515736 GCTTTTCCTGCGCATGCTC 60.516 57.895 12.24 8.73 43.34 4.26
482 484 1.808531 TTGCTTTTCCTGCGCATGCT 61.809 50.000 12.24 0.00 43.34 3.79
483 485 0.945265 TTTGCTTTTCCTGCGCATGC 60.945 50.000 12.24 7.91 43.20 4.06
484 486 1.458064 CTTTTGCTTTTCCTGCGCATG 59.542 47.619 12.24 8.91 33.15 4.06
485 487 1.787012 CTTTTGCTTTTCCTGCGCAT 58.213 45.000 12.24 0.00 33.15 4.73
486 488 0.875474 GCTTTTGCTTTTCCTGCGCA 60.875 50.000 10.98 10.98 43.35 6.09
487 489 1.855338 GCTTTTGCTTTTCCTGCGC 59.145 52.632 0.00 0.00 43.35 6.09
499 501 5.065218 GTGGAGGTCATATGTACAGCTTTTG 59.935 44.000 0.33 0.00 0.00 2.44
515 532 2.223294 CGTATCTGAACGAGTGGAGGTC 60.223 54.545 0.00 0.00 45.68 3.85
516 533 1.743958 CGTATCTGAACGAGTGGAGGT 59.256 52.381 0.00 0.00 45.68 3.85
543 563 3.246619 GCTCTTTGTCTCCAACGAGTAG 58.753 50.000 9.68 0.00 44.57 2.57
545 565 1.603172 CGCTCTTTGTCTCCAACGAGT 60.603 52.381 9.68 0.00 44.57 4.18
572 592 1.574702 GGTCGAAAAAGGGCAGACCG 61.575 60.000 0.00 0.00 46.96 4.79
645 680 1.504359 TTAAGGCGGAAACTGACACG 58.496 50.000 0.00 0.00 0.00 4.49
648 683 4.534168 GACTTTTTAAGGCGGAAACTGAC 58.466 43.478 0.00 0.00 0.00 3.51
661 696 5.123502 TGTTGTTGTAGTGGCGACTTTTTAA 59.876 36.000 6.71 0.00 33.21 1.52
662 697 4.634883 TGTTGTTGTAGTGGCGACTTTTTA 59.365 37.500 6.71 0.00 33.21 1.52
700 736 6.702282 CCGTTTTTGTTCTCTTCTCTCTTACT 59.298 38.462 0.00 0.00 0.00 2.24
701 737 6.479331 ACCGTTTTTGTTCTCTTCTCTCTTAC 59.521 38.462 0.00 0.00 0.00 2.34
848 887 0.970427 CGGGGTGCTATTTTTGGGCT 60.970 55.000 0.00 0.00 0.00 5.19
901 951 1.586564 GATGGCGTCGTTCCTCTCG 60.587 63.158 0.00 0.00 0.00 4.04
904 954 0.669318 TGTTGATGGCGTCGTTCCTC 60.669 55.000 1.67 0.00 0.00 3.71
905 955 0.670546 CTGTTGATGGCGTCGTTCCT 60.671 55.000 1.67 0.00 0.00 3.36
906 956 1.787847 CTGTTGATGGCGTCGTTCC 59.212 57.895 1.67 0.00 0.00 3.62
907 957 1.132640 GCTGTTGATGGCGTCGTTC 59.867 57.895 1.67 0.00 0.00 3.95
1588 1670 1.228552 GGAAGCAAGCAAGGGACCA 60.229 57.895 0.00 0.00 0.00 4.02
1590 1672 0.678048 ATCGGAAGCAAGCAAGGGAC 60.678 55.000 0.00 0.00 0.00 4.46
1591 1673 0.038166 AATCGGAAGCAAGCAAGGGA 59.962 50.000 0.00 0.00 0.00 4.20
1592 1674 0.890683 AAATCGGAAGCAAGCAAGGG 59.109 50.000 0.00 0.00 0.00 3.95
1593 1675 1.541147 TGAAATCGGAAGCAAGCAAGG 59.459 47.619 0.00 0.00 0.00 3.61
1657 1745 1.078848 CTTTGGCGACCAGAGAGGG 60.079 63.158 9.79 0.00 43.89 4.30
1701 1789 6.334202 AGATTCTCTCTTTGTTAGTTAGGCG 58.666 40.000 0.00 0.00 0.00 5.52
1704 1792 7.486551 CCGTGAGATTCTCTCTTTGTTAGTTAG 59.513 40.741 14.54 0.00 43.73 2.34
1705 1793 7.313646 CCGTGAGATTCTCTCTTTGTTAGTTA 58.686 38.462 14.54 0.00 43.73 2.24
1706 1794 6.159988 CCGTGAGATTCTCTCTTTGTTAGTT 58.840 40.000 14.54 0.00 43.73 2.24
1707 1795 5.336849 CCCGTGAGATTCTCTCTTTGTTAGT 60.337 44.000 14.54 0.00 43.73 2.24
1708 1796 5.105716 TCCCGTGAGATTCTCTCTTTGTTAG 60.106 44.000 14.54 0.00 43.73 2.34
1709 1797 4.770531 TCCCGTGAGATTCTCTCTTTGTTA 59.229 41.667 14.54 0.00 43.73 2.41
1710 1798 3.578716 TCCCGTGAGATTCTCTCTTTGTT 59.421 43.478 14.54 0.00 43.73 2.83
1974 2065 3.426568 GAGCTTGGTGACCTGCGC 61.427 66.667 2.11 0.00 0.00 6.09
2163 2254 4.996062 ATTGAAGCTTTCGGCAAAAATG 57.004 36.364 0.00 0.00 44.79 2.32
2200 2291 3.753272 ACAATGCAAGGCTTACTACTGTG 59.247 43.478 0.00 0.00 0.00 3.66
2335 2438 8.871629 TTTCTAGCAGAAATTGGTATAACCAA 57.128 30.769 13.55 13.55 45.55 3.67
2353 2456 5.444218 CGTATTGGTCGTGACTTTTTCTAGC 60.444 44.000 0.00 0.00 0.00 3.42
2363 2470 2.660236 GACTTGACGTATTGGTCGTGAC 59.340 50.000 0.00 0.00 41.64 3.67
2367 2474 2.661675 CACTGACTTGACGTATTGGTCG 59.338 50.000 0.00 0.00 39.83 4.79
2412 2519 6.297582 TCTACAAAACTTTATCGTTTCCCCA 58.702 36.000 0.00 0.00 36.16 4.96
2413 2520 6.806388 TCTACAAAACTTTATCGTTTCCCC 57.194 37.500 0.00 0.00 36.16 4.81
2477 2584 4.542697 ACCAACCGAAATATGGGCTAATT 58.457 39.130 0.00 0.00 38.58 1.40
2478 2585 4.178956 ACCAACCGAAATATGGGCTAAT 57.821 40.909 0.00 0.00 38.58 1.73
2616 2742 3.379688 GGCTTTCCATGGTTCTCATTCTC 59.620 47.826 12.58 0.00 32.92 2.87
2697 2823 7.818446 AGATCATGATGAAGGATGTTCTTATCG 59.182 37.037 14.30 0.00 28.46 2.92
2700 2826 7.448420 GGAGATCATGATGAAGGATGTTCTTA 58.552 38.462 14.30 0.00 31.63 2.10
2806 3479 4.989279 TTACGGAGGGAGTACATAACAC 57.011 45.455 0.00 0.00 0.00 3.32
2817 3490 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2818 3491 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2819 3492 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2820 3493 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2821 3494 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2822 3495 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2834 3507 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2835 3508 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2836 3509 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2837 3510 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2851 3524 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2852 3525 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2854 3527 9.733219 GTATAAGAGCGTTTAGATCACTACTTT 57.267 33.333 0.00 0.00 37.82 2.66
2855 3528 9.122779 AGTATAAGAGCGTTTAGATCACTACTT 57.877 33.333 0.00 0.00 37.82 2.24
2856 3529 8.680039 AGTATAAGAGCGTTTAGATCACTACT 57.320 34.615 0.00 0.00 37.82 2.57
2857 3530 9.733219 AAAGTATAAGAGCGTTTAGATCACTAC 57.267 33.333 0.00 0.00 37.82 2.73
2859 3532 9.953697 CTAAAGTATAAGAGCGTTTAGATCACT 57.046 33.333 0.00 0.00 37.82 3.41
2860 3533 9.733219 ACTAAAGTATAAGAGCGTTTAGATCAC 57.267 33.333 7.05 0.00 37.82 3.06
2861 3534 9.731819 CACTAAAGTATAAGAGCGTTTAGATCA 57.268 33.333 7.05 0.00 37.82 2.92
2862 3535 9.947669 TCACTAAAGTATAAGAGCGTTTAGATC 57.052 33.333 7.05 0.00 35.28 2.75
2864 3537 9.947669 GATCACTAAAGTATAAGAGCGTTTAGA 57.052 33.333 7.05 0.00 35.28 2.10
2865 3538 9.953697 AGATCACTAAAGTATAAGAGCGTTTAG 57.046 33.333 0.00 0.00 36.95 1.85
2869 3542 9.733219 GTTTAGATCACTAAAGTATAAGAGCGT 57.267 33.333 0.00 0.00 45.42 5.07
2870 3543 8.893884 CGTTTAGATCACTAAAGTATAAGAGCG 58.106 37.037 0.00 0.00 45.42 5.03
2871 3544 8.692615 GCGTTTAGATCACTAAAGTATAAGAGC 58.307 37.037 0.00 0.00 45.42 4.09
2872 3545 9.953697 AGCGTTTAGATCACTAAAGTATAAGAG 57.046 33.333 0.00 0.00 45.42 2.85
2873 3546 9.947669 GAGCGTTTAGATCACTAAAGTATAAGA 57.052 33.333 0.00 0.00 45.42 2.10
2874 3547 9.731819 TGAGCGTTTAGATCACTAAAGTATAAG 57.268 33.333 0.00 0.00 45.42 1.73
2887 3560 8.215132 CCGTAAAGAAATATGAGCGTTTAGATC 58.785 37.037 0.00 0.00 35.45 2.75
2888 3561 7.924412 TCCGTAAAGAAATATGAGCGTTTAGAT 59.076 33.333 0.00 0.00 0.00 1.98
2889 3562 7.259882 TCCGTAAAGAAATATGAGCGTTTAGA 58.740 34.615 0.00 0.00 0.00 2.10
2890 3563 7.306632 CCTCCGTAAAGAAATATGAGCGTTTAG 60.307 40.741 0.00 0.00 0.00 1.85
2891 3564 6.477688 CCTCCGTAAAGAAATATGAGCGTTTA 59.522 38.462 0.00 0.00 0.00 2.01
2892 3565 5.293569 CCTCCGTAAAGAAATATGAGCGTTT 59.706 40.000 0.00 0.00 0.00 3.60
2893 3566 4.809426 CCTCCGTAAAGAAATATGAGCGTT 59.191 41.667 0.00 0.00 0.00 4.84
2894 3567 4.369182 CCTCCGTAAAGAAATATGAGCGT 58.631 43.478 0.00 0.00 0.00 5.07
2895 3568 3.741344 CCCTCCGTAAAGAAATATGAGCG 59.259 47.826 0.00 0.00 0.00 5.03
2896 3569 4.957296 TCCCTCCGTAAAGAAATATGAGC 58.043 43.478 0.00 0.00 0.00 4.26
2897 3570 6.163135 ACTCCCTCCGTAAAGAAATATGAG 57.837 41.667 0.00 0.00 0.00 2.90
2898 3571 6.608405 TGTACTCCCTCCGTAAAGAAATATGA 59.392 38.462 0.00 0.00 0.00 2.15
2899 3572 6.812998 TGTACTCCCTCCGTAAAGAAATATG 58.187 40.000 0.00 0.00 0.00 1.78
2900 3573 7.289317 TGATGTACTCCCTCCGTAAAGAAATAT 59.711 37.037 0.00 0.00 0.00 1.28
2901 3574 6.608405 TGATGTACTCCCTCCGTAAAGAAATA 59.392 38.462 0.00 0.00 0.00 1.40
2902 3575 5.424252 TGATGTACTCCCTCCGTAAAGAAAT 59.576 40.000 0.00 0.00 0.00 2.17
2903 3576 4.773674 TGATGTACTCCCTCCGTAAAGAAA 59.226 41.667 0.00 0.00 0.00 2.52
2904 3577 4.346730 TGATGTACTCCCTCCGTAAAGAA 58.653 43.478 0.00 0.00 0.00 2.52
2905 3578 3.972133 TGATGTACTCCCTCCGTAAAGA 58.028 45.455 0.00 0.00 0.00 2.52
2906 3579 4.939052 ATGATGTACTCCCTCCGTAAAG 57.061 45.455 0.00 0.00 0.00 1.85
2907 3580 5.657745 TGTAATGATGTACTCCCTCCGTAAA 59.342 40.000 0.00 0.00 0.00 2.01
2908 3581 5.202765 TGTAATGATGTACTCCCTCCGTAA 58.797 41.667 0.00 0.00 0.00 3.18
2909 3582 4.795469 TGTAATGATGTACTCCCTCCGTA 58.205 43.478 0.00 0.00 0.00 4.02
2910 3583 3.638860 TGTAATGATGTACTCCCTCCGT 58.361 45.455 0.00 0.00 0.00 4.69
2911 3584 4.665833 TTGTAATGATGTACTCCCTCCG 57.334 45.455 0.00 0.00 0.00 4.63
2912 3585 6.426646 AGATTGTAATGATGTACTCCCTCC 57.573 41.667 0.00 0.00 0.00 4.30
2913 3586 8.738645 AAAAGATTGTAATGATGTACTCCCTC 57.261 34.615 0.00 0.00 0.00 4.30
2914 3587 9.614792 GTAAAAGATTGTAATGATGTACTCCCT 57.385 33.333 0.00 0.00 0.00 4.20
2915 3588 8.837389 GGTAAAAGATTGTAATGATGTACTCCC 58.163 37.037 0.00 0.00 0.00 4.30
2916 3589 8.548721 CGGTAAAAGATTGTAATGATGTACTCC 58.451 37.037 0.00 0.00 0.00 3.85
2917 3590 8.548721 CCGGTAAAAGATTGTAATGATGTACTC 58.451 37.037 0.00 0.00 0.00 2.59
2918 3591 8.044908 ACCGGTAAAAGATTGTAATGATGTACT 58.955 33.333 4.49 0.00 0.00 2.73
2919 3592 8.205131 ACCGGTAAAAGATTGTAATGATGTAC 57.795 34.615 4.49 0.00 0.00 2.90
2920 3593 8.262227 AGACCGGTAAAAGATTGTAATGATGTA 58.738 33.333 7.34 0.00 0.00 2.29
2921 3594 7.065803 CAGACCGGTAAAAGATTGTAATGATGT 59.934 37.037 7.34 0.00 0.00 3.06
2922 3595 7.065803 ACAGACCGGTAAAAGATTGTAATGATG 59.934 37.037 7.34 0.00 0.00 3.07
2973 3646 4.970860 TTTGGAATTGCAAAATGGAGGA 57.029 36.364 21.12 0.00 0.00 3.71
3035 3708 0.550914 AAGACCACTTGAGCCCACAA 59.449 50.000 0.00 0.00 34.80 3.33
3135 3808 6.191657 AGATCTTGAATACCATGTGCCATA 57.808 37.500 0.00 0.00 0.00 2.74
3153 3826 5.106237 GCATGAGCAAAAGAAGACAAGATCT 60.106 40.000 0.00 0.00 41.58 2.75
3159 3832 6.579666 AAATAGCATGAGCAAAAGAAGACA 57.420 33.333 0.00 0.00 45.49 3.41
3198 3871 7.984050 TGAATGTTGATTCCAAACAAAAAGCTA 59.016 29.630 0.00 0.00 37.74 3.32
3239 3912 4.678044 GCTGCTGTGTGCTCAGTATACTTA 60.678 45.833 1.56 0.00 43.37 2.24
3341 4014 6.579666 GTGTATTTGTGGTCGTATTCCAAAAC 59.420 38.462 0.00 0.00 36.68 2.43
3510 4188 5.359194 TCCAAGAGTTATCTGGCTTAAGG 57.641 43.478 4.29 0.00 35.37 2.69
3519 4197 6.655425 GTGCTAAAAGGTTCCAAGAGTTATCT 59.345 38.462 0.00 0.00 37.39 1.98
3600 4278 5.068460 GCTCAGCCAGTCTAGATCTTTTCTA 59.932 44.000 0.00 0.00 35.79 2.10
3692 4370 5.813157 GTGCTTTCTAGAAGGATGGAACTAC 59.187 44.000 18.10 0.00 0.00 2.73
3776 4454 7.095229 TGTCTACAGCTACAAAAACATAGCAAG 60.095 37.037 6.08 1.17 45.22 4.01
3830 4509 3.070734 ACATGATATCTGTGCAGGTCTCC 59.929 47.826 0.00 0.00 0.00 3.71
3895 4574 9.890629 TGTAAAGATCAGCATGTTTAACTCTAT 57.109 29.630 0.00 0.00 37.40 1.98
3913 4594 9.836864 TTTAGCATCATCAGTACATGTAAAGAT 57.163 29.630 7.25 10.85 0.00 2.40
4040 4721 3.505680 TGTGGCATACCTTTGACATTGTC 59.494 43.478 9.93 9.93 36.90 3.18
4043 4724 3.056607 GCTTGTGGCATACCTTTGACATT 60.057 43.478 0.00 0.00 36.90 2.71
4069 4750 7.368059 CAGTATGGTATAATTGAGCTACACGA 58.632 38.462 0.00 0.00 0.00 4.35
4070 4751 6.089551 GCAGTATGGTATAATTGAGCTACACG 59.910 42.308 0.00 0.00 35.86 4.49
4071 4752 6.369065 GGCAGTATGGTATAATTGAGCTACAC 59.631 42.308 0.00 0.00 35.86 2.90
4081 4762 6.841601 ACAATGACAGGCAGTATGGTATAAT 58.158 36.000 0.00 0.00 35.86 1.28
4095 4776 5.920273 GGACACAATTAACAACAATGACAGG 59.080 40.000 0.00 0.00 0.00 4.00
4098 4779 7.867403 AGAATGGACACAATTAACAACAATGAC 59.133 33.333 0.00 0.00 0.00 3.06
4107 4789 9.994432 CAAATAGAGAGAATGGACACAATTAAC 57.006 33.333 0.00 0.00 0.00 2.01
4145 4829 6.305272 ACTCTGAATGTATGTCCTGTCAAT 57.695 37.500 0.00 0.00 0.00 2.57
4257 4943 4.080582 TGGACACCTCAAACAGAAGAAGAA 60.081 41.667 0.00 0.00 0.00 2.52
4259 4945 3.808728 TGGACACCTCAAACAGAAGAAG 58.191 45.455 0.00 0.00 0.00 2.85
4317 5006 5.287170 ACAATTGTCTGTTGATGTCGATG 57.713 39.130 4.92 0.00 0.00 3.84
4407 5096 9.807921 AGGAAAACCATACTTTCAAGATTAAGA 57.192 29.630 0.00 0.00 34.99 2.10
4411 5100 7.725844 AGACAGGAAAACCATACTTTCAAGATT 59.274 33.333 0.00 0.00 34.99 2.40
4421 5111 9.406828 GAATTTGTTTAGACAGGAAAACCATAC 57.593 33.333 0.00 0.00 37.04 2.39
4441 5131 5.818720 GATGCCGCCTGAAGTGGAATTTG 62.819 52.174 0.00 0.00 45.34 2.32
4442 5132 3.782775 GATGCCGCCTGAAGTGGAATTT 61.783 50.000 0.00 0.00 45.34 1.82
4461 5151 2.140839 AGGAAGACGGTTAGACGGAT 57.859 50.000 0.00 0.00 38.39 4.18
4463 5153 2.738013 AAAGGAAGACGGTTAGACGG 57.262 50.000 0.00 0.00 38.39 4.79
4465 5155 3.995048 CAGGAAAAGGAAGACGGTTAGAC 59.005 47.826 0.00 0.00 0.00 2.59
4472 5163 6.395629 TCTGTATAACAGGAAAAGGAAGACG 58.604 40.000 7.18 0.00 45.94 4.18
4498 5192 1.103803 TGCTACTTAGGCTGTCGGAG 58.896 55.000 0.00 0.00 0.00 4.63
4508 5202 3.165058 TGTCGCTCCAATGCTACTTAG 57.835 47.619 0.00 0.00 31.15 2.18
4534 5228 1.030457 ACCGGATGTAGCTCCTAACG 58.970 55.000 9.46 0.00 32.77 3.18
4572 5266 2.993899 ACCTTACAAGCTCGACGAAATG 59.006 45.455 0.00 0.86 0.00 2.32
4573 5267 3.314541 ACCTTACAAGCTCGACGAAAT 57.685 42.857 0.00 0.00 0.00 2.17
4574 5268 2.806608 ACCTTACAAGCTCGACGAAA 57.193 45.000 0.00 0.00 0.00 3.46
4591 5285 4.290155 CATCAATACTTGCCGCAATAACC 58.710 43.478 6.19 0.00 0.00 2.85
4703 5397 1.798735 CAAGCCAGCCAGTCAATCG 59.201 57.895 0.00 0.00 0.00 3.34
4763 5457 4.113354 CCTTCGCTCCTACAACAATAGAC 58.887 47.826 0.00 0.00 0.00 2.59
4801 5495 2.178890 GCTGCCCATGCTTCTCTCG 61.179 63.158 0.00 0.00 38.71 4.04
4802 5496 1.823041 GGCTGCCCATGCTTCTCTC 60.823 63.158 7.66 0.00 38.71 3.20
4873 5609 3.746492 AGTAAGTCAATGCGAAGGAACAC 59.254 43.478 0.00 0.00 0.00 3.32
4882 5618 3.242543 GGCTTCATGAGTAAGTCAATGCG 60.243 47.826 0.00 0.00 39.19 4.73
4883 5619 3.065925 GGGCTTCATGAGTAAGTCAATGC 59.934 47.826 0.00 0.00 39.19 3.56
4923 5659 1.792367 GAATTTGCGGCCAAAGAACAC 59.208 47.619 2.24 0.00 43.60 3.32
4932 5668 2.438868 AACAAGAAGAATTTGCGGCC 57.561 45.000 0.00 0.00 0.00 6.13
4935 5671 6.918022 AGTTCCTAAAACAAGAAGAATTTGCG 59.082 34.615 0.00 0.00 0.00 4.85
4937 5673 8.197439 ACCAGTTCCTAAAACAAGAAGAATTTG 58.803 33.333 0.00 0.00 0.00 2.32
4962 5698 7.429340 CACGCCAAAATATTTCTCATCAGTAAC 59.571 37.037 0.10 0.00 0.00 2.50
4963 5699 7.120579 ACACGCCAAAATATTTCTCATCAGTAA 59.879 33.333 0.10 0.00 0.00 2.24
4964 5700 6.597672 ACACGCCAAAATATTTCTCATCAGTA 59.402 34.615 0.10 0.00 0.00 2.74
4965 5701 5.415701 ACACGCCAAAATATTTCTCATCAGT 59.584 36.000 0.10 0.00 0.00 3.41
4966 5702 5.883661 ACACGCCAAAATATTTCTCATCAG 58.116 37.500 0.10 0.00 0.00 2.90
4967 5703 5.447144 CGACACGCCAAAATATTTCTCATCA 60.447 40.000 0.10 0.00 0.00 3.07
4968 5704 4.963953 CGACACGCCAAAATATTTCTCATC 59.036 41.667 0.10 0.00 0.00 2.92
4969 5705 4.394920 ACGACACGCCAAAATATTTCTCAT 59.605 37.500 0.10 0.00 0.00 2.90
4970 5706 3.749088 ACGACACGCCAAAATATTTCTCA 59.251 39.130 0.10 0.00 0.00 3.27
4971 5707 4.336532 ACGACACGCCAAAATATTTCTC 57.663 40.909 0.10 0.00 0.00 2.87
4978 5714 1.673920 ACAGAAACGACACGCCAAAAT 59.326 42.857 0.00 0.00 0.00 1.82
4980 5716 1.593933 GTACAGAAACGACACGCCAAA 59.406 47.619 0.00 0.00 0.00 3.28
4994 5731 6.850752 TGAATATCACCAGTCAAGTACAGA 57.149 37.500 0.00 0.00 0.00 3.41
4998 5735 5.189736 AGGCTTGAATATCACCAGTCAAGTA 59.810 40.000 12.97 0.00 46.90 2.24
5008 5745 3.118261 TCCTCCACAGGCTTGAATATCAC 60.118 47.826 1.40 0.00 40.12 3.06
5015 5752 1.704628 TGAATTCCTCCACAGGCTTGA 59.295 47.619 1.40 0.00 40.12 3.02
5040 5839 0.179026 CCATCAGAGGACATGGCCAG 60.179 60.000 22.78 9.56 33.37 4.85
5060 5859 8.734386 AGAATGGTAATTTTGACTCACTGAATC 58.266 33.333 0.00 0.00 0.00 2.52
5063 5862 7.439157 CAGAATGGTAATTTTGACTCACTGA 57.561 36.000 0.00 0.00 31.11 3.41
5083 5882 1.818060 CATGCGGATTTTCACCCAGAA 59.182 47.619 0.00 0.00 0.00 3.02
5099 5898 2.857592 AAATCCGCTGATCAACATGC 57.142 45.000 0.00 0.00 0.00 4.06
5131 5930 0.178932 AGTGACTGCCACCACTAGGA 60.179 55.000 0.00 0.00 46.87 2.94
5171 5970 2.544903 CGTCCAACCAAAACCAATCACC 60.545 50.000 0.00 0.00 0.00 4.02
5243 6044 3.292492 AACCGGATAACCCCATCTTTC 57.708 47.619 9.46 0.00 0.00 2.62
5381 6192 1.945394 CCATGGAGCATCACTGTTAGC 59.055 52.381 5.56 0.00 36.25 3.09
5393 6204 1.410153 CCTTTACAATGGCCATGGAGC 59.590 52.381 27.65 0.00 0.00 4.70
5408 6219 4.646040 CCAATCATGCACCATCTTCCTTTA 59.354 41.667 0.00 0.00 0.00 1.85
5410 6221 3.028850 CCAATCATGCACCATCTTCCTT 58.971 45.455 0.00 0.00 0.00 3.36
5423 6234 4.778579 ACTTCTCCAGTGATCCAATCATG 58.221 43.478 0.00 0.00 42.04 3.07
5439 6250 1.222113 GGCCCCTGTGCTACTTCTC 59.778 63.158 0.00 0.00 0.00 2.87
5440 6251 2.660064 CGGCCCCTGTGCTACTTCT 61.660 63.158 0.00 0.00 0.00 2.85
5455 6266 1.470112 GCTCAGAGTAGGACTTTCGGC 60.470 57.143 0.00 0.00 0.00 5.54
5457 6268 2.223157 CGAGCTCAGAGTAGGACTTTCG 60.223 54.545 15.40 0.00 0.00 3.46
5458 6269 3.011119 TCGAGCTCAGAGTAGGACTTTC 58.989 50.000 15.40 0.00 0.00 2.62
5523 6334 9.573133 ACGAATCATGATTCCTTAATGTTTTTC 57.427 29.630 32.73 12.68 43.14 2.29
5524 6335 9.357652 CACGAATCATGATTCCTTAATGTTTTT 57.642 29.630 32.73 5.60 43.14 1.94
5529 6340 6.866010 TCCACGAATCATGATTCCTTAATG 57.134 37.500 32.73 23.00 43.14 1.90
5530 6341 7.056635 ACTTCCACGAATCATGATTCCTTAAT 58.943 34.615 32.73 16.52 43.14 1.40
5531 6342 6.414732 ACTTCCACGAATCATGATTCCTTAA 58.585 36.000 32.73 22.65 43.14 1.85
5532 6343 5.989477 ACTTCCACGAATCATGATTCCTTA 58.011 37.500 32.73 18.42 43.14 2.69
5533 6344 4.848357 ACTTCCACGAATCATGATTCCTT 58.152 39.130 32.73 21.73 43.14 3.36
5534 6345 4.494091 ACTTCCACGAATCATGATTCCT 57.506 40.909 32.73 23.07 43.14 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.