Multiple sequence alignment - TraesCS4B01G346100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G346100 | chr4B | 100.000 | 6608 | 0 | 0 | 1 | 6608 | 639853066 | 639846459 | 0.000000e+00 | 12203.0 |
1 | TraesCS4B01G346100 | chr4B | 92.490 | 253 | 19 | 0 | 971 | 1223 | 154978918 | 154978666 | 4.870000e-96 | 363.0 |
2 | TraesCS4B01G346100 | chr5A | 89.731 | 3827 | 228 | 93 | 679 | 4423 | 678273949 | 678270206 | 0.000000e+00 | 4737.0 |
3 | TraesCS4B01G346100 | chr5A | 90.360 | 1473 | 63 | 33 | 4795 | 6245 | 678269815 | 678268400 | 0.000000e+00 | 1860.0 |
4 | TraesCS4B01G346100 | chr5A | 91.248 | 617 | 36 | 7 | 4 | 608 | 678274949 | 678274339 | 0.000000e+00 | 824.0 |
5 | TraesCS4B01G346100 | chr5A | 86.314 | 548 | 46 | 11 | 971 | 1492 | 649696159 | 649695615 | 2.670000e-158 | 569.0 |
6 | TraesCS4B01G346100 | chr5A | 90.934 | 364 | 32 | 1 | 6245 | 6608 | 678268364 | 678268002 | 7.700000e-134 | 488.0 |
7 | TraesCS4B01G346100 | chr5A | 98.000 | 50 | 1 | 0 | 633 | 682 | 678274024 | 678273975 | 3.280000e-13 | 87.9 |
8 | TraesCS4B01G346100 | chr4D | 89.165 | 3867 | 208 | 74 | 2432 | 6245 | 497947998 | 497944290 | 0.000000e+00 | 4625.0 |
9 | TraesCS4B01G346100 | chr4D | 90.038 | 2339 | 122 | 43 | 4 | 2267 | 497950356 | 497948054 | 0.000000e+00 | 2926.0 |
10 | TraesCS4B01G346100 | chr4D | 94.199 | 362 | 21 | 0 | 6247 | 6608 | 497944248 | 497943887 | 2.690000e-153 | 553.0 |
11 | TraesCS4B01G346100 | chr7A | 90.476 | 525 | 34 | 6 | 979 | 1492 | 652373163 | 652373682 | 0.000000e+00 | 678.0 |
12 | TraesCS4B01G346100 | chr7A | 90.724 | 442 | 31 | 3 | 979 | 1413 | 107669179 | 107668741 | 1.240000e-161 | 580.0 |
13 | TraesCS4B01G346100 | chr3A | 89.955 | 448 | 41 | 3 | 971 | 1414 | 22386993 | 22386546 | 5.750000e-160 | 575.0 |
14 | TraesCS4B01G346100 | chr6B | 85.609 | 542 | 57 | 9 | 973 | 1499 | 608273851 | 608274386 | 3.480000e-152 | 549.0 |
15 | TraesCS4B01G346100 | chrUn | 92.095 | 253 | 20 | 0 | 971 | 1223 | 471169934 | 471170186 | 2.270000e-94 | 357.0 |
16 | TraesCS4B01G346100 | chrUn | 83.430 | 344 | 34 | 12 | 1006 | 1333 | 205346676 | 205346340 | 1.390000e-76 | 298.0 |
17 | TraesCS4B01G346100 | chrUn | 83.140 | 344 | 35 | 13 | 1006 | 1333 | 349933070 | 349933406 | 6.480000e-75 | 292.0 |
18 | TraesCS4B01G346100 | chr5B | 92.754 | 69 | 2 | 2 | 1425 | 1492 | 531180140 | 531180074 | 5.450000e-16 | 97.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G346100 | chr4B | 639846459 | 639853066 | 6607 | True | 12203.000000 | 12203 | 100.0000 | 1 | 6608 | 1 | chr4B.!!$R2 | 6607 |
1 | TraesCS4B01G346100 | chr5A | 678268002 | 678274949 | 6947 | True | 1599.380000 | 4737 | 92.0546 | 4 | 6608 | 5 | chr5A.!!$R2 | 6604 |
2 | TraesCS4B01G346100 | chr5A | 649695615 | 649696159 | 544 | True | 569.000000 | 569 | 86.3140 | 971 | 1492 | 1 | chr5A.!!$R1 | 521 |
3 | TraesCS4B01G346100 | chr4D | 497943887 | 497950356 | 6469 | True | 2701.333333 | 4625 | 91.1340 | 4 | 6608 | 3 | chr4D.!!$R1 | 6604 |
4 | TraesCS4B01G346100 | chr7A | 652373163 | 652373682 | 519 | False | 678.000000 | 678 | 90.4760 | 979 | 1492 | 1 | chr7A.!!$F1 | 513 |
5 | TraesCS4B01G346100 | chr6B | 608273851 | 608274386 | 535 | False | 549.000000 | 549 | 85.6090 | 973 | 1499 | 1 | chr6B.!!$F1 | 526 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
423 | 428 | 0.184933 | TTCTTGGGGTGTGGGTTCTG | 59.815 | 55.0 | 0.00 | 0.00 | 0.00 | 3.02 | F |
2002 | 2394 | 0.177604 | GAGATGCAGGTGAGGGACTG | 59.822 | 60.0 | 0.00 | 0.00 | 41.55 | 3.51 | F |
2199 | 2627 | 0.032017 | ATGTTCGAGCCCTACTCCCT | 60.032 | 55.0 | 0.00 | 0.00 | 43.01 | 4.20 | F |
3232 | 3693 | 0.109342 | CCACCCAACTGAGCTCAACT | 59.891 | 55.0 | 18.85 | 4.52 | 0.00 | 3.16 | F |
4976 | 5564 | 0.827368 | TGCACCGTACCTATCATGCA | 59.173 | 50.0 | 0.00 | 0.00 | 40.57 | 3.96 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2199 | 2627 | 0.463295 | CGGGTGACTCGGTAGCTCTA | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 2.43 | R |
3451 | 3914 | 0.036388 | CATAATAGGGGCGCGACCAT | 60.036 | 55.000 | 35.87 | 31.47 | 42.05 | 3.55 | R |
3725 | 4201 | 0.388134 | TTACGTGAAGCGCTGGAGAC | 60.388 | 55.000 | 12.58 | 4.36 | 46.11 | 3.36 | R |
5058 | 5654 | 1.275291 | CGGGTTGGAGAACAGCTAAGA | 59.725 | 52.381 | 0.00 | 0.00 | 33.27 | 2.10 | R |
6397 | 7073 | 0.252197 | AGTAGGTGGTCGGCAATTCC | 59.748 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
152 | 155 | 8.321353 | TGGATTACACTCTTGATACTGTTTCAT | 58.679 | 33.333 | 1.81 | 0.00 | 0.00 | 2.57 |
183 | 186 | 5.731591 | AGTAATCTTCTTTTACCTCGGTGG | 58.268 | 41.667 | 0.00 | 0.00 | 42.93 | 4.61 |
228 | 231 | 6.790825 | GCTTTCTAGAACGTTGTTTACATCAC | 59.209 | 38.462 | 5.00 | 0.00 | 0.00 | 3.06 |
328 | 331 | 1.742761 | TGCTGGAGTATGCTTCAAGC | 58.257 | 50.000 | 1.04 | 1.04 | 42.82 | 4.01 |
423 | 428 | 0.184933 | TTCTTGGGGTGTGGGTTCTG | 59.815 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
453 | 458 | 7.097017 | TTGGAACACAAGGTAGAGACCACAA | 62.097 | 44.000 | 0.00 | 0.00 | 44.51 | 3.33 |
454 | 459 | 8.330617 | TTGGAACACAAGGTAGAGACCACAAT | 62.331 | 42.308 | 0.00 | 0.00 | 44.51 | 2.71 |
474 | 479 | 0.817013 | ATGGTGCAATTTGGTAGGCG | 59.183 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
551 | 560 | 1.771255 | ACCAGCCTTATCATGACCCTC | 59.229 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
609 | 624 | 3.947834 | CCCAAACTCTCTCTCTCTCTCTC | 59.052 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
610 | 625 | 4.324563 | CCCAAACTCTCTCTCTCTCTCTCT | 60.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
611 | 626 | 4.878397 | CCAAACTCTCTCTCTCTCTCTCTC | 59.122 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
612 | 627 | 5.338708 | CCAAACTCTCTCTCTCTCTCTCTCT | 60.339 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
613 | 628 | 5.606348 | AACTCTCTCTCTCTCTCTCTCTC | 57.394 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
614 | 629 | 4.877773 | ACTCTCTCTCTCTCTCTCTCTCT | 58.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
615 | 630 | 4.892934 | ACTCTCTCTCTCTCTCTCTCTCTC | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
616 | 631 | 5.136068 | TCTCTCTCTCTCTCTCTCTCTCT | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
617 | 632 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
618 | 633 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
629 | 644 | 1.603802 | CTCTCTCTCTCTCATCGTGCC | 59.396 | 57.143 | 0.00 | 0.00 | 0.00 | 5.01 |
710 | 1045 | 2.335712 | GGGCGGGCTCACTTTCTTG | 61.336 | 63.158 | 0.26 | 0.00 | 0.00 | 3.02 |
818 | 1155 | 1.150536 | CTCTCCTCCCTCCTCTCCG | 59.849 | 68.421 | 0.00 | 0.00 | 0.00 | 4.63 |
990 | 1329 | 0.661780 | CGGCGAACAGGAGATCGATC | 60.662 | 60.000 | 17.91 | 17.91 | 41.92 | 3.69 |
1375 | 1720 | 3.066481 | CGCTACCTACCTACCACTTCTTC | 59.934 | 52.174 | 0.00 | 0.00 | 0.00 | 2.87 |
1376 | 1721 | 4.021916 | GCTACCTACCTACCACTTCTTCA | 58.978 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
1624 | 2006 | 7.928873 | TCTACCTACCTGGAAATTTCATTTCT | 58.071 | 34.615 | 19.49 | 0.96 | 46.03 | 2.52 |
1627 | 2009 | 8.525290 | ACCTACCTGGAAATTTCATTTCTATG | 57.475 | 34.615 | 19.49 | 4.55 | 46.03 | 2.23 |
1632 | 2014 | 8.960591 | ACCTGGAAATTTCATTTCTATGTACAG | 58.039 | 33.333 | 19.49 | 11.72 | 46.03 | 2.74 |
1657 | 2039 | 9.271921 | AGCATCCATGTCTGTATTATATTCCTA | 57.728 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
1716 | 2098 | 2.704596 | AGTGCTATCATCAGGTCATGCT | 59.295 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
1720 | 2102 | 4.951715 | TGCTATCATCAGGTCATGCTTTTT | 59.048 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
1728 | 2110 | 4.280425 | TCAGGTCATGCTTTTTGTGCAATA | 59.720 | 37.500 | 0.00 | 0.00 | 44.01 | 1.90 |
1848 | 2236 | 3.059597 | CACGTCGAAAATCTCAAAGCTGT | 60.060 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
1958 | 2350 | 8.466798 | ACATAAACAAACTTTATGATACCCTGC | 58.533 | 33.333 | 16.18 | 0.00 | 42.15 | 4.85 |
1959 | 2351 | 6.909550 | AAACAAACTTTATGATACCCTGCA | 57.090 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
1960 | 2352 | 7.480760 | AAACAAACTTTATGATACCCTGCAT | 57.519 | 32.000 | 0.00 | 0.00 | 0.00 | 3.96 |
1961 | 2353 | 8.588290 | AAACAAACTTTATGATACCCTGCATA | 57.412 | 30.769 | 0.00 | 0.00 | 0.00 | 3.14 |
1962 | 2354 | 8.766994 | AACAAACTTTATGATACCCTGCATAT | 57.233 | 30.769 | 0.00 | 0.00 | 0.00 | 1.78 |
1963 | 2355 | 8.169977 | ACAAACTTTATGATACCCTGCATATG | 57.830 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
1964 | 2356 | 7.779798 | ACAAACTTTATGATACCCTGCATATGT | 59.220 | 33.333 | 4.29 | 0.00 | 0.00 | 2.29 |
1965 | 2357 | 9.283768 | CAAACTTTATGATACCCTGCATATGTA | 57.716 | 33.333 | 4.29 | 0.00 | 0.00 | 2.29 |
2000 | 2392 | 0.980231 | AGGAGATGCAGGTGAGGGAC | 60.980 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2002 | 2394 | 0.177604 | GAGATGCAGGTGAGGGACTG | 59.822 | 60.000 | 0.00 | 0.00 | 41.55 | 3.51 |
2003 | 2395 | 1.222936 | GATGCAGGTGAGGGACTGG | 59.777 | 63.158 | 0.00 | 0.00 | 41.55 | 4.00 |
2004 | 2396 | 2.262774 | GATGCAGGTGAGGGACTGGG | 62.263 | 65.000 | 0.00 | 0.00 | 41.55 | 4.45 |
2051 | 2473 | 3.726144 | GGAGAAGCCCAGCAGCCT | 61.726 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
2072 | 2498 | 0.524414 | GCCGACGCCCTAACAAATTT | 59.476 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2073 | 2499 | 1.731098 | GCCGACGCCCTAACAAATTTG | 60.731 | 52.381 | 16.67 | 16.67 | 0.00 | 2.32 |
2084 | 2510 | 6.813649 | GCCCTAACAAATTTGAAATTCCTCTC | 59.186 | 38.462 | 24.64 | 0.80 | 0.00 | 3.20 |
2086 | 2512 | 7.039082 | CCCTAACAAATTTGAAATTCCTCTCCA | 60.039 | 37.037 | 24.64 | 0.00 | 0.00 | 3.86 |
2093 | 2519 | 3.624777 | TGAAATTCCTCTCCATTGAGCC | 58.375 | 45.455 | 0.00 | 0.00 | 38.58 | 4.70 |
2094 | 2520 | 2.338577 | AATTCCTCTCCATTGAGCCG | 57.661 | 50.000 | 0.00 | 0.00 | 38.58 | 5.52 |
2096 | 2522 | 0.826715 | TTCCTCTCCATTGAGCCGAG | 59.173 | 55.000 | 0.00 | 0.00 | 38.58 | 4.63 |
2098 | 2524 | 0.179089 | CCTCTCCATTGAGCCGAGTG | 60.179 | 60.000 | 0.00 | 0.00 | 38.58 | 3.51 |
2099 | 2525 | 0.820226 | CTCTCCATTGAGCCGAGTGA | 59.180 | 55.000 | 0.00 | 0.00 | 38.58 | 3.41 |
2111 | 2539 | 4.870426 | TGAGCCGAGTGATTTTTCAGATAC | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2120 | 2548 | 6.660521 | AGTGATTTTTCAGATACAGAATGGCA | 59.339 | 34.615 | 0.00 | 0.00 | 43.62 | 4.92 |
2170 | 2598 | 8.109634 | AGGTAAAGTTAACAAGATGGACATCAT | 58.890 | 33.333 | 14.16 | 0.00 | 40.22 | 2.45 |
2176 | 2604 | 7.667219 | AGTTAACAAGATGGACATCATTGAAGT | 59.333 | 33.333 | 20.76 | 0.00 | 40.22 | 3.01 |
2199 | 2627 | 0.032017 | ATGTTCGAGCCCTACTCCCT | 60.032 | 55.000 | 0.00 | 0.00 | 43.01 | 4.20 |
2201 | 2629 | 1.320507 | GTTCGAGCCCTACTCCCTAG | 58.679 | 60.000 | 0.00 | 0.00 | 43.01 | 3.02 |
2222 | 2650 | 1.028868 | GCTACCGAGTCACCCGTAGT | 61.029 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2249 | 2677 | 2.699321 | GGTTCTACCCGCCTAATCTTCT | 59.301 | 50.000 | 0.00 | 0.00 | 30.04 | 2.85 |
2252 | 2680 | 3.638860 | TCTACCCGCCTAATCTTCTTCA | 58.361 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2257 | 2685 | 1.300481 | GCCTAATCTTCTTCACCGCC | 58.700 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2276 | 2719 | 2.119655 | CCTCCCCGTCTACCGTCAG | 61.120 | 68.421 | 0.00 | 0.00 | 33.66 | 3.51 |
2278 | 2721 | 3.066190 | CCCCGTCTACCGTCAGCA | 61.066 | 66.667 | 0.00 | 0.00 | 33.66 | 4.41 |
2289 | 2732 | 2.108168 | ACCGTCAGCAAGCCTCTTATA | 58.892 | 47.619 | 0.00 | 0.00 | 0.00 | 0.98 |
2296 | 2739 | 4.410228 | TCAGCAAGCCTCTTATACCTCATT | 59.590 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2332 | 2775 | 4.386761 | CCTCCTCCATGAACCACCAATTAT | 60.387 | 45.833 | 0.00 | 0.00 | 0.00 | 1.28 |
2336 | 2779 | 5.658190 | CCTCCATGAACCACCAATTATCTTT | 59.342 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2346 | 2789 | 6.194967 | CCACCAATTATCTTTTCCTAACCCT | 58.805 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2373 | 2816 | 7.715266 | TCAGATGATCCATTCTAATCTCGAT | 57.285 | 36.000 | 0.00 | 0.00 | 0.00 | 3.59 |
2374 | 2817 | 7.770201 | TCAGATGATCCATTCTAATCTCGATC | 58.230 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
2376 | 2819 | 5.316327 | TGATCCATTCTAATCTCGATCGG | 57.684 | 43.478 | 16.41 | 6.26 | 30.92 | 4.18 |
2377 | 2820 | 4.767409 | TGATCCATTCTAATCTCGATCGGT | 59.233 | 41.667 | 16.41 | 0.00 | 30.92 | 4.69 |
2378 | 2821 | 4.505313 | TCCATTCTAATCTCGATCGGTG | 57.495 | 45.455 | 16.41 | 8.93 | 0.00 | 4.94 |
2379 | 2822 | 3.889538 | TCCATTCTAATCTCGATCGGTGT | 59.110 | 43.478 | 16.41 | 1.02 | 0.00 | 4.16 |
2380 | 2823 | 4.341235 | TCCATTCTAATCTCGATCGGTGTT | 59.659 | 41.667 | 16.41 | 9.79 | 0.00 | 3.32 |
2381 | 2824 | 4.681942 | CCATTCTAATCTCGATCGGTGTTC | 59.318 | 45.833 | 16.41 | 0.00 | 0.00 | 3.18 |
2396 | 2839 | 2.234414 | GGTGTTCATACCCGTCCAACTA | 59.766 | 50.000 | 0.00 | 0.00 | 34.56 | 2.24 |
2426 | 2869 | 2.357517 | GGTGGTGCCAGTCTCACG | 60.358 | 66.667 | 0.00 | 0.00 | 37.17 | 4.35 |
2443 | 2886 | 2.908796 | GTCAAGATCCCCCGTCCC | 59.091 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
2458 | 2901 | 1.229853 | TCCCACTTCTTCCTCCCCC | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
2470 | 2913 | 2.016096 | TCCTCCCCCTTCTTTCTCCTA | 58.984 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
2474 | 2917 | 4.140663 | CCTCCCCCTTCTTTCTCCTATCTA | 60.141 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2482 | 2925 | 7.728083 | CCCTTCTTTCTCCTATCTAGAGAATCA | 59.272 | 40.741 | 0.00 | 0.00 | 46.77 | 2.57 |
2487 | 2930 | 8.472007 | TTTCTCCTATCTAGAGAATCACTTCC | 57.528 | 38.462 | 0.00 | 0.00 | 46.77 | 3.46 |
2502 | 2945 | 1.152271 | ACTTCCTCCTCCTCCTTCCAA | 59.848 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
2503 | 2946 | 1.836802 | CTTCCTCCTCCTCCTTCCAAG | 59.163 | 57.143 | 0.00 | 0.00 | 0.00 | 3.61 |
2507 | 2950 | 0.475632 | TCCTCCTCCTTCCAAGCCAA | 60.476 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2508 | 2951 | 0.322906 | CCTCCTCCTTCCAAGCCAAC | 60.323 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2509 | 2952 | 0.401738 | CTCCTCCTTCCAAGCCAACA | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2510 | 2953 | 0.401738 | TCCTCCTTCCAAGCCAACAG | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2511 | 2954 | 0.111253 | CCTCCTTCCAAGCCAACAGT | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2512 | 2955 | 1.242076 | CTCCTTCCAAGCCAACAGTG | 58.758 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2513 | 2956 | 0.843309 | TCCTTCCAAGCCAACAGTGA | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2514 | 2957 | 1.202806 | TCCTTCCAAGCCAACAGTGAG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2524 | 2967 | 4.029520 | AGCCAACAGTGAGTCTCTATGAT | 58.970 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
2544 | 2987 | 3.517296 | TCAGGGAGCAAAATTACACCA | 57.483 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
2549 | 2992 | 6.152661 | TCAGGGAGCAAAATTACACCAAATAG | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2550 | 2993 | 6.152661 | CAGGGAGCAAAATTACACCAAATAGA | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
2578 | 3021 | 7.758820 | TTTATAAGAGGATAACCAAGGGTCA | 57.241 | 36.000 | 0.00 | 0.00 | 33.12 | 4.02 |
2579 | 3022 | 7.947782 | TTATAAGAGGATAACCAAGGGTCAT | 57.052 | 36.000 | 0.00 | 0.00 | 33.12 | 3.06 |
2580 | 3023 | 4.510167 | AAGAGGATAACCAAGGGTCATG | 57.490 | 45.455 | 0.00 | 0.00 | 33.12 | 3.07 |
2591 | 3035 | 2.505407 | CAAGGGTCATGGTATCTGTGGA | 59.495 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2603 | 3047 | 9.605275 | CATGGTATCTGTGGATAATATTGGTAG | 57.395 | 37.037 | 0.00 | 0.00 | 36.35 | 3.18 |
2697 | 3141 | 6.347696 | ACAATGTGAAATTTTCTCTTGGCAA | 58.652 | 32.000 | 10.33 | 0.00 | 0.00 | 4.52 |
2703 | 3147 | 1.604604 | TTTTCTCTTGGCAACCCTCG | 58.395 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2708 | 3152 | 1.377725 | CTTGGCAACCCTCGCTCAT | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
2717 | 3161 | 2.484928 | CCTCGCTCATGCTCCTCGA | 61.485 | 63.158 | 0.00 | 0.00 | 36.97 | 4.04 |
2745 | 3189 | 6.775629 | GGTAAGAAGGGGCAATATTGTTCATA | 59.224 | 38.462 | 16.61 | 7.20 | 0.00 | 2.15 |
2747 | 3191 | 7.530426 | AAGAAGGGGCAATATTGTTCATATC | 57.470 | 36.000 | 16.61 | 8.68 | 0.00 | 1.63 |
2748 | 3192 | 6.613699 | AGAAGGGGCAATATTGTTCATATCA | 58.386 | 36.000 | 16.61 | 0.00 | 0.00 | 2.15 |
2753 | 3197 | 9.378504 | AGGGGCAATATTGTTCATATCATTTAA | 57.621 | 29.630 | 16.61 | 0.00 | 0.00 | 1.52 |
2773 | 3217 | 7.696992 | TTTAAACATAATCCCAAGTGAGGTC | 57.303 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2833 | 3278 | 8.395633 | CGAAATAACCGGTTTCTTGAAATATCT | 58.604 | 33.333 | 27.64 | 0.00 | 34.28 | 1.98 |
2864 | 3309 | 7.466746 | TTCAGGGGAAAAACAGATATCTTTG | 57.533 | 36.000 | 1.33 | 0.00 | 0.00 | 2.77 |
2927 | 3374 | 5.828299 | TGTTGAATTCGAGGAAAGTTTGT | 57.172 | 34.783 | 0.04 | 0.00 | 0.00 | 2.83 |
2935 | 3382 | 3.064271 | TCGAGGAAAGTTTGTCAAAACCG | 59.936 | 43.478 | 0.00 | 0.00 | 45.75 | 4.44 |
2962 | 3414 | 5.722021 | TTCTGGCTGGTATTTTTCTTTCC | 57.278 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
3023 | 3476 | 3.019564 | GGAATGGAAACCCTGATCACAG | 58.980 | 50.000 | 0.00 | 0.00 | 43.12 | 3.66 |
3166 | 3627 | 5.071653 | ACACCCAAATTTAAGCAAGGTGAAT | 59.928 | 36.000 | 18.61 | 3.56 | 44.85 | 2.57 |
3181 | 3642 | 6.092122 | GCAAGGTGAATTTAAAAACTATGGGC | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 5.36 |
3182 | 3643 | 6.926630 | AGGTGAATTTAAAAACTATGGGCA | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
3207 | 3668 | 3.306502 | GGAAATGTACGTTCACTCTCCCA | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 4.37 |
3208 | 3669 | 3.314541 | AATGTACGTTCACTCTCCCAC | 57.685 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
3209 | 3670 | 0.594602 | TGTACGTTCACTCTCCCACG | 59.405 | 55.000 | 0.00 | 0.00 | 38.62 | 4.94 |
3210 | 3671 | 0.109412 | GTACGTTCACTCTCCCACGG | 60.109 | 60.000 | 0.00 | 0.00 | 36.95 | 4.94 |
3211 | 3672 | 0.538057 | TACGTTCACTCTCCCACGGT | 60.538 | 55.000 | 0.00 | 0.00 | 36.95 | 4.83 |
3212 | 3673 | 1.080705 | CGTTCACTCTCCCACGGTC | 60.081 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
3213 | 3674 | 1.292541 | GTTCACTCTCCCACGGTCC | 59.707 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
3214 | 3675 | 1.911766 | TTCACTCTCCCACGGTCCC | 60.912 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
3221 | 3682 | 4.653888 | CCCACGGTCCCACCCAAC | 62.654 | 72.222 | 0.00 | 0.00 | 33.75 | 3.77 |
3232 | 3693 | 0.109342 | CCACCCAACTGAGCTCAACT | 59.891 | 55.000 | 18.85 | 4.52 | 0.00 | 3.16 |
3243 | 3704 | 7.256119 | CCAACTGAGCTCAACTATATACTCCAT | 60.256 | 40.741 | 18.85 | 0.00 | 0.00 | 3.41 |
3260 | 3721 | 1.327460 | CCATATTTGCACCGTGTCTCG | 59.673 | 52.381 | 0.00 | 0.00 | 39.52 | 4.04 |
3261 | 3722 | 2.267426 | CATATTTGCACCGTGTCTCGA | 58.733 | 47.619 | 0.00 | 0.00 | 42.86 | 4.04 |
3262 | 3723 | 2.665649 | TATTTGCACCGTGTCTCGAT | 57.334 | 45.000 | 0.00 | 0.00 | 42.86 | 3.59 |
3263 | 3724 | 1.808411 | ATTTGCACCGTGTCTCGATT | 58.192 | 45.000 | 0.00 | 0.00 | 42.86 | 3.34 |
3321 | 3782 | 7.990917 | TGAGCAAACACAAAACTGAAGTAATA | 58.009 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
3380 | 3841 | 4.956700 | TCTTGTCTAACTAGCTGCCTATGT | 59.043 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3384 | 3845 | 5.046591 | TGTCTAACTAGCTGCCTATGTGTTT | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3451 | 3914 | 3.523157 | ACATGACATGACCATACCCTTCA | 59.477 | 43.478 | 22.19 | 0.00 | 0.00 | 3.02 |
3516 | 3992 | 3.561310 | CACTAGCTCTTTTGACAAGTGCA | 59.439 | 43.478 | 7.94 | 0.00 | 38.73 | 4.57 |
3582 | 4058 | 1.060937 | GCGCTGAAATGGCTGTACG | 59.939 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
3646 | 4122 | 8.610035 | GTTTGACAAAGTTTTGCTAGTACTACT | 58.390 | 33.333 | 0.00 | 0.00 | 41.79 | 2.57 |
3647 | 4123 | 9.820725 | TTTGACAAAGTTTTGCTAGTACTACTA | 57.179 | 29.630 | 0.00 | 0.00 | 41.79 | 1.82 |
3648 | 4124 | 8.807667 | TGACAAAGTTTTGCTAGTACTACTAC | 57.192 | 34.615 | 0.00 | 0.00 | 41.79 | 2.73 |
3649 | 4125 | 7.869429 | TGACAAAGTTTTGCTAGTACTACTACC | 59.131 | 37.037 | 0.00 | 0.00 | 41.79 | 3.18 |
3650 | 4126 | 7.960262 | ACAAAGTTTTGCTAGTACTACTACCT | 58.040 | 34.615 | 0.00 | 0.00 | 41.79 | 3.08 |
3696 | 4172 | 4.342092 | GCTCAGGTTTTGCCACCATATATT | 59.658 | 41.667 | 0.09 | 0.00 | 39.62 | 1.28 |
3697 | 4173 | 5.534654 | GCTCAGGTTTTGCCACCATATATTA | 59.465 | 40.000 | 0.09 | 0.00 | 39.62 | 0.98 |
3725 | 4201 | 2.478831 | GGCTCTATCTTGCTTCTTCCG | 58.521 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3819 | 4299 | 7.918562 | GTCTCTACTCCACTTGATTAATCTGTC | 59.081 | 40.741 | 16.24 | 0.00 | 0.00 | 3.51 |
3835 | 4319 | 8.515695 | TTAATCTGTCGATGAGTAGTTTCCTA | 57.484 | 34.615 | 0.00 | 0.00 | 0.00 | 2.94 |
3842 | 4326 | 4.517453 | CGATGAGTAGTTTCCTAGCTAGCT | 59.483 | 45.833 | 23.12 | 23.12 | 0.00 | 3.32 |
3843 | 4327 | 5.701750 | CGATGAGTAGTTTCCTAGCTAGCTA | 59.298 | 44.000 | 22.85 | 22.85 | 0.00 | 3.32 |
3844 | 4328 | 6.128391 | CGATGAGTAGTTTCCTAGCTAGCTAG | 60.128 | 46.154 | 35.39 | 35.39 | 44.07 | 3.42 |
4100 | 4584 | 6.876257 | CCCCTTAATTAGCTATAGTTGCTCAG | 59.124 | 42.308 | 0.84 | 0.00 | 41.46 | 3.35 |
4423 | 4908 | 9.185192 | CTCAAAATTGAACTCAAACAGGTATTC | 57.815 | 33.333 | 0.00 | 0.00 | 39.55 | 1.75 |
4428 | 4924 | 6.558771 | TGAACTCAAACAGGTATTCATGTG | 57.441 | 37.500 | 0.00 | 0.00 | 38.61 | 3.21 |
4436 | 4932 | 6.743575 | AACAGGTATTCATGTGCTAGAAAC | 57.256 | 37.500 | 0.00 | 0.00 | 38.61 | 2.78 |
4447 | 4943 | 4.199310 | TGTGCTAGAAACTGAGTTTGCTT | 58.801 | 39.130 | 16.25 | 3.65 | 35.77 | 3.91 |
4449 | 4945 | 4.513318 | GTGCTAGAAACTGAGTTTGCTTCT | 59.487 | 41.667 | 16.25 | 8.80 | 35.77 | 2.85 |
4450 | 4946 | 5.008118 | GTGCTAGAAACTGAGTTTGCTTCTT | 59.992 | 40.000 | 16.25 | 0.00 | 35.77 | 2.52 |
4451 | 4947 | 5.237344 | TGCTAGAAACTGAGTTTGCTTCTTC | 59.763 | 40.000 | 16.25 | 0.00 | 35.77 | 2.87 |
4452 | 4948 | 5.468409 | GCTAGAAACTGAGTTTGCTTCTTCT | 59.532 | 40.000 | 16.25 | 6.97 | 35.77 | 2.85 |
4453 | 4949 | 6.017523 | GCTAGAAACTGAGTTTGCTTCTTCTT | 60.018 | 38.462 | 16.25 | 0.00 | 35.77 | 2.52 |
4454 | 4950 | 6.370433 | AGAAACTGAGTTTGCTTCTTCTTC | 57.630 | 37.500 | 16.25 | 0.00 | 35.77 | 2.87 |
4455 | 4951 | 6.118852 | AGAAACTGAGTTTGCTTCTTCTTCT | 58.881 | 36.000 | 16.25 | 0.00 | 35.77 | 2.85 |
4456 | 4952 | 6.601217 | AGAAACTGAGTTTGCTTCTTCTTCTT | 59.399 | 34.615 | 16.25 | 0.00 | 35.77 | 2.52 |
4457 | 4953 | 6.765915 | AACTGAGTTTGCTTCTTCTTCTTT | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
4458 | 4954 | 6.765915 | ACTGAGTTTGCTTCTTCTTCTTTT | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
4459 | 4955 | 7.163001 | ACTGAGTTTGCTTCTTCTTCTTTTT | 57.837 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4488 | 4984 | 7.316687 | GTGAAACTTAGTTTGCCGTAAAATC | 57.683 | 36.000 | 15.57 | 0.00 | 35.77 | 2.17 |
4491 | 4987 | 8.500773 | TGAAACTTAGTTTGCCGTAAAATCTAG | 58.499 | 33.333 | 15.57 | 0.00 | 35.77 | 2.43 |
4495 | 4991 | 5.485662 | AGTTTGCCGTAAAATCTAGATGC | 57.514 | 39.130 | 5.86 | 4.78 | 0.00 | 3.91 |
4510 | 5006 | 5.716979 | TCTAGATGCTATTACCACCTTCCT | 58.283 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
4517 | 5013 | 9.740710 | GATGCTATTACCACCTTCCTAAAATAT | 57.259 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
4544 | 5123 | 9.698309 | ATCAAGTATGTGCTAGTACAATACATC | 57.302 | 33.333 | 17.90 | 5.32 | 34.22 | 3.06 |
4603 | 5182 | 7.579589 | TGTGCAAAATTATTTGGATTTCTCG | 57.420 | 32.000 | 0.00 | 0.00 | 46.53 | 4.04 |
4612 | 5191 | 8.792830 | ATTATTTGGATTTCTCGAGTGAAGAA | 57.207 | 30.769 | 13.13 | 0.00 | 0.00 | 2.52 |
4616 | 5196 | 6.486253 | TGGATTTCTCGAGTGAAGAATTTG | 57.514 | 37.500 | 13.13 | 0.00 | 0.00 | 2.32 |
4620 | 5200 | 7.862873 | GGATTTCTCGAGTGAAGAATTTGTTTT | 59.137 | 33.333 | 13.13 | 0.00 | 0.00 | 2.43 |
4635 | 5215 | 9.539194 | AGAATTTGTTTTCTCAAGGGAAGATAT | 57.461 | 29.630 | 0.00 | 0.00 | 29.99 | 1.63 |
4750 | 5330 | 4.136796 | TGAACTGGAGACCATGTCAAAAG | 58.863 | 43.478 | 0.00 | 0.00 | 34.60 | 2.27 |
4754 | 5334 | 3.674997 | TGGAGACCATGTCAAAAGCTAC | 58.325 | 45.455 | 0.00 | 0.00 | 34.60 | 3.58 |
4760 | 5340 | 6.653020 | AGACCATGTCAAAAGCTACATCATA | 58.347 | 36.000 | 0.00 | 0.00 | 34.12 | 2.15 |
4761 | 5341 | 7.112122 | AGACCATGTCAAAAGCTACATCATAA | 58.888 | 34.615 | 0.00 | 0.00 | 34.12 | 1.90 |
4792 | 5379 | 2.097825 | GAGTGCCATGGAAGCTTGATT | 58.902 | 47.619 | 18.40 | 0.00 | 0.00 | 2.57 |
4793 | 5380 | 1.822990 | AGTGCCATGGAAGCTTGATTG | 59.177 | 47.619 | 18.40 | 0.00 | 0.00 | 2.67 |
4806 | 5393 | 7.611467 | TGGAAGCTTGATTGTATCAGTGTTAAT | 59.389 | 33.333 | 2.10 | 0.00 | 40.94 | 1.40 |
4810 | 5397 | 9.236006 | AGCTTGATTGTATCAGTGTTAATTTCT | 57.764 | 29.630 | 0.00 | 0.00 | 40.94 | 2.52 |
4974 | 5562 | 2.100749 | TGAGTGCACCGTACCTATCATG | 59.899 | 50.000 | 14.63 | 0.00 | 0.00 | 3.07 |
4975 | 5563 | 1.202533 | AGTGCACCGTACCTATCATGC | 60.203 | 52.381 | 14.63 | 0.00 | 0.00 | 4.06 |
4976 | 5564 | 0.827368 | TGCACCGTACCTATCATGCA | 59.173 | 50.000 | 0.00 | 0.00 | 40.57 | 3.96 |
4977 | 5565 | 1.416030 | TGCACCGTACCTATCATGCAT | 59.584 | 47.619 | 0.00 | 0.00 | 38.11 | 3.96 |
5018 | 5614 | 2.881539 | TAGCCATCCACTGCTGCTGC | 62.882 | 60.000 | 8.89 | 8.89 | 38.52 | 5.25 |
5019 | 5615 | 2.045242 | CCATCCACTGCTGCTGCT | 60.045 | 61.111 | 17.00 | 0.00 | 40.48 | 4.24 |
5020 | 5616 | 2.407428 | CCATCCACTGCTGCTGCTG | 61.407 | 63.158 | 18.66 | 18.66 | 42.70 | 4.41 |
5021 | 5617 | 2.750637 | ATCCACTGCTGCTGCTGC | 60.751 | 61.111 | 22.51 | 22.51 | 41.07 | 5.25 |
5022 | 5618 | 3.269521 | ATCCACTGCTGCTGCTGCT | 62.270 | 57.895 | 27.67 | 9.87 | 41.07 | 4.24 |
5023 | 5619 | 3.738246 | CCACTGCTGCTGCTGCTG | 61.738 | 66.667 | 27.75 | 27.75 | 41.07 | 4.41 |
5032 | 5628 | 2.125065 | CTGCTGCTGCTGCTAGCT | 60.125 | 61.111 | 27.67 | 0.00 | 42.97 | 3.32 |
5033 | 5629 | 1.143401 | CTGCTGCTGCTGCTAGCTA | 59.857 | 57.895 | 27.67 | 17.98 | 42.97 | 3.32 |
5034 | 5630 | 0.876777 | CTGCTGCTGCTGCTAGCTAG | 60.877 | 60.000 | 27.67 | 16.84 | 42.97 | 3.42 |
5058 | 5654 | 1.134907 | GCTAAGCAGTTGCCATGCATT | 60.135 | 47.619 | 0.00 | 2.62 | 46.31 | 3.56 |
5076 | 5672 | 3.127721 | GCATTCTTAGCTGTTCTCCAACC | 59.872 | 47.826 | 0.00 | 0.00 | 0.00 | 3.77 |
5077 | 5673 | 3.418684 | TTCTTAGCTGTTCTCCAACCC | 57.581 | 47.619 | 0.00 | 0.00 | 0.00 | 4.11 |
5120 | 5721 | 3.144506 | ACTTGTTCCATCAGACAGCTTG | 58.855 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
5121 | 5722 | 1.527034 | TGTTCCATCAGACAGCTTGC | 58.473 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
5122 | 5723 | 1.202794 | TGTTCCATCAGACAGCTTGCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
5123 | 5724 | 2.089980 | GTTCCATCAGACAGCTTGCAT | 58.910 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
5124 | 5725 | 2.490903 | GTTCCATCAGACAGCTTGCATT | 59.509 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
5220 | 5826 | 6.587226 | TCTCAATTGCATGATGTTTACTTTGC | 59.413 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
5225 | 5831 | 4.448395 | TGCATGATGTTTACTTTGCTTTGC | 59.552 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
5321 | 5932 | 1.936547 | GAAGACGATAAGGCCAAGCTG | 59.063 | 52.381 | 5.01 | 0.00 | 0.00 | 4.24 |
5451 | 6062 | 5.587043 | CGTAAAAGGTGAGCCAACCAATATA | 59.413 | 40.000 | 8.06 | 0.00 | 43.20 | 0.86 |
5452 | 6063 | 6.262273 | CGTAAAAGGTGAGCCAACCAATATAT | 59.738 | 38.462 | 8.06 | 0.00 | 43.20 | 0.86 |
5453 | 6064 | 7.442969 | CGTAAAAGGTGAGCCAACCAATATATA | 59.557 | 37.037 | 8.06 | 0.00 | 43.20 | 0.86 |
5454 | 6065 | 9.297037 | GTAAAAGGTGAGCCAACCAATATATAT | 57.703 | 33.333 | 8.06 | 0.00 | 43.20 | 0.86 |
5455 | 6066 | 8.409358 | AAAAGGTGAGCCAACCAATATATATC | 57.591 | 34.615 | 8.06 | 0.00 | 43.20 | 1.63 |
5456 | 6067 | 6.702449 | AGGTGAGCCAACCAATATATATCA | 57.298 | 37.500 | 8.06 | 0.00 | 43.20 | 2.15 |
5458 | 6069 | 5.648092 | GGTGAGCCAACCAATATATATCACC | 59.352 | 44.000 | 9.47 | 9.47 | 45.09 | 4.02 |
5462 | 6080 | 7.037370 | TGAGCCAACCAATATATATCACCATCT | 60.037 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
5464 | 6082 | 8.835734 | AGCCAACCAATATATATCACCATCTAA | 58.164 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
5476 | 6094 | 3.863424 | TCACCATCTAAATTCGTTCGCTC | 59.137 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
5529 | 6148 | 1.269257 | TGATCCATCAGTTAGAGCGCG | 60.269 | 52.381 | 0.00 | 0.00 | 32.11 | 6.86 |
5531 | 6150 | 0.382158 | TCCATCAGTTAGAGCGCGAG | 59.618 | 55.000 | 12.10 | 0.00 | 0.00 | 5.03 |
5610 | 6229 | 3.055167 | TGATGTGTATGTGCAGGTAGCTT | 60.055 | 43.478 | 0.00 | 0.00 | 45.94 | 3.74 |
5611 | 6230 | 4.161377 | TGATGTGTATGTGCAGGTAGCTTA | 59.839 | 41.667 | 0.00 | 0.00 | 45.94 | 3.09 |
5612 | 6231 | 4.123497 | TGTGTATGTGCAGGTAGCTTAG | 57.877 | 45.455 | 0.00 | 0.00 | 45.94 | 2.18 |
5613 | 6232 | 3.118775 | TGTGTATGTGCAGGTAGCTTAGG | 60.119 | 47.826 | 0.00 | 0.00 | 45.94 | 2.69 |
5614 | 6233 | 3.104512 | TGTATGTGCAGGTAGCTTAGGT | 58.895 | 45.455 | 0.00 | 0.00 | 45.94 | 3.08 |
5615 | 6234 | 2.698855 | ATGTGCAGGTAGCTTAGGTG | 57.301 | 50.000 | 0.00 | 0.00 | 45.94 | 4.00 |
5616 | 6235 | 0.613260 | TGTGCAGGTAGCTTAGGTGG | 59.387 | 55.000 | 0.00 | 0.00 | 45.94 | 4.61 |
5617 | 6236 | 0.107654 | GTGCAGGTAGCTTAGGTGGG | 60.108 | 60.000 | 0.00 | 0.00 | 45.94 | 4.61 |
5620 | 6239 | 0.466124 | CAGGTAGCTTAGGTGGGAGC | 59.534 | 60.000 | 0.00 | 0.00 | 39.17 | 4.70 |
5625 | 6244 | 1.002134 | GCTTAGGTGGGAGCTGCAA | 60.002 | 57.895 | 7.79 | 0.00 | 36.01 | 4.08 |
5627 | 6246 | 1.909700 | CTTAGGTGGGAGCTGCAAAA | 58.090 | 50.000 | 7.79 | 0.00 | 0.00 | 2.44 |
5628 | 6247 | 1.815003 | CTTAGGTGGGAGCTGCAAAAG | 59.185 | 52.381 | 7.79 | 0.00 | 0.00 | 2.27 |
5653 | 6272 | 9.942850 | AGTGCAAAGTATATACATGCATATACA | 57.057 | 29.630 | 31.66 | 16.44 | 45.86 | 2.29 |
5817 | 6438 | 1.511887 | CTGGCATACGCGTTGCAAC | 60.512 | 57.895 | 31.98 | 19.89 | 41.95 | 4.17 |
5833 | 6455 | 4.690184 | TGCAACTGTTGAGCTGATATTG | 57.310 | 40.909 | 23.81 | 0.00 | 0.00 | 1.90 |
5887 | 6516 | 4.274602 | TGTTGTGGGTGAACGTACATAT | 57.725 | 40.909 | 0.00 | 0.00 | 0.00 | 1.78 |
5890 | 6519 | 4.274602 | TGTGGGTGAACGTACATATGTT | 57.725 | 40.909 | 14.77 | 0.00 | 38.08 | 2.71 |
5897 | 6526 | 6.311723 | GGTGAACGTACATATGTTTCCAAAG | 58.688 | 40.000 | 14.77 | 0.21 | 35.69 | 2.77 |
5916 | 6545 | 6.040054 | TCCAAAGATTCATTCCTGTGCATATG | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
5918 | 6547 | 7.013559 | CCAAAGATTCATTCCTGTGCATATGTA | 59.986 | 37.037 | 4.29 | 0.00 | 0.00 | 2.29 |
5920 | 6549 | 7.683437 | AGATTCATTCCTGTGCATATGTATG | 57.317 | 36.000 | 4.29 | 0.00 | 36.78 | 2.39 |
5930 | 6559 | 9.822185 | TCCTGTGCATATGTATGTATATTGATC | 57.178 | 33.333 | 4.29 | 0.00 | 36.11 | 2.92 |
5931 | 6560 | 9.603921 | CCTGTGCATATGTATGTATATTGATCA | 57.396 | 33.333 | 4.29 | 0.00 | 36.11 | 2.92 |
5956 | 6585 | 2.104530 | GCCTTCTACGGCGTCTCC | 59.895 | 66.667 | 19.21 | 0.00 | 40.79 | 3.71 |
5972 | 6601 | 4.787598 | CGTCTCCAATGACCAAAGAAAAG | 58.212 | 43.478 | 0.00 | 0.00 | 33.70 | 2.27 |
6008 | 6637 | 6.978080 | CCTCTGCTTTTATCAAGTCTCTCTAC | 59.022 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
6018 | 6647 | 4.095036 | TCAAGTCTCTCTACGTATGTGCTG | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 4.41 |
6019 | 6648 | 3.611970 | AGTCTCTCTACGTATGTGCTGT | 58.388 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
6020 | 6649 | 3.623960 | AGTCTCTCTACGTATGTGCTGTC | 59.376 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
6108 | 6742 | 2.288013 | CGTACGCGTCTTGATGCAT | 58.712 | 52.632 | 18.63 | 0.00 | 0.00 | 3.96 |
6140 | 6774 | 0.250901 | CTAGTGCTGTGTGGGCCTTT | 60.251 | 55.000 | 4.53 | 0.00 | 0.00 | 3.11 |
6274 | 6950 | 7.668469 | ACATATATGTTGTGCATCCTCATCATT | 59.332 | 33.333 | 12.75 | 0.00 | 37.90 | 2.57 |
6310 | 6986 | 4.840772 | GCGCAGATTATAGTTATGCAAACG | 59.159 | 41.667 | 0.30 | 0.00 | 36.70 | 3.60 |
6348 | 7024 | 0.470645 | AGAGCCAAAAGCCAAAGCCT | 60.471 | 50.000 | 0.00 | 0.00 | 45.47 | 4.58 |
6557 | 7233 | 1.798223 | CGGAATGCGAAGAGTTCACAA | 59.202 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
6585 | 7261 | 2.834549 | CACCCAGAGGAACTACAGATGT | 59.165 | 50.000 | 0.00 | 0.00 | 41.55 | 3.06 |
6601 | 7277 | 5.114780 | ACAGATGTGATGCAGTTCATAGTC | 58.885 | 41.667 | 0.00 | 0.00 | 35.05 | 2.59 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 6.073440 | GGAGTAAACACTGATGACGCTTTTAA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
1 | 2 | 5.407387 | GGAGTAAACACTGATGACGCTTTTA | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2 | 3 | 4.213482 | GGAGTAAACACTGATGACGCTTTT | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
97 | 100 | 6.364945 | ACAGCTTAACTTTGACTTTGAGAC | 57.635 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
176 | 179 | 6.537301 | TGCAGTAAAAATATCTAACCACCGAG | 59.463 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
177 | 180 | 6.408035 | TGCAGTAAAAATATCTAACCACCGA | 58.592 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
178 | 181 | 6.671614 | TGCAGTAAAAATATCTAACCACCG | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 4.94 |
186 | 189 | 9.618890 | TCTAGAAAGCATGCAGTAAAAATATCT | 57.381 | 29.630 | 21.98 | 7.48 | 0.00 | 1.98 |
189 | 192 | 8.175069 | CGTTCTAGAAAGCATGCAGTAAAAATA | 58.825 | 33.333 | 21.98 | 0.78 | 0.00 | 1.40 |
423 | 428 | 3.777556 | CTTGTGTTCCAAGGGGGC | 58.222 | 61.111 | 0.00 | 0.00 | 45.70 | 5.80 |
453 | 458 | 2.622942 | CGCCTACCAAATTGCACCATAT | 59.377 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
454 | 459 | 2.020720 | CGCCTACCAAATTGCACCATA | 58.979 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
474 | 479 | 4.526650 | TGAGGGTTTGGAATAAAGAAAGGC | 59.473 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
551 | 560 | 0.253677 | AGGAGGGTAGGGGAAAAGGG | 60.254 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
609 | 624 | 1.603802 | GGCACGATGAGAGAGAGAGAG | 59.396 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
610 | 625 | 1.065126 | TGGCACGATGAGAGAGAGAGA | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
611 | 626 | 1.387539 | TGGCACGATGAGAGAGAGAG | 58.612 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
612 | 627 | 2.064434 | ATGGCACGATGAGAGAGAGA | 57.936 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
613 | 628 | 3.998099 | TTATGGCACGATGAGAGAGAG | 57.002 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
614 | 629 | 5.316987 | TCTATTATGGCACGATGAGAGAGA | 58.683 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
615 | 630 | 5.182950 | ACTCTATTATGGCACGATGAGAGAG | 59.817 | 44.000 | 17.26 | 10.44 | 34.86 | 3.20 |
616 | 631 | 5.073428 | ACTCTATTATGGCACGATGAGAGA | 58.927 | 41.667 | 17.26 | 0.36 | 34.58 | 3.10 |
617 | 632 | 5.384063 | ACTCTATTATGGCACGATGAGAG | 57.616 | 43.478 | 11.55 | 11.55 | 36.18 | 3.20 |
618 | 633 | 8.575649 | TTATACTCTATTATGGCACGATGAGA | 57.424 | 34.615 | 11.46 | 1.87 | 0.00 | 3.27 |
884 | 1222 | 1.000060 | TGGCGTCGGGTATGTATAAGC | 60.000 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
885 | 1223 | 2.608752 | GGTGGCGTCGGGTATGTATAAG | 60.609 | 54.545 | 0.00 | 0.00 | 0.00 | 1.73 |
886 | 1224 | 1.340889 | GGTGGCGTCGGGTATGTATAA | 59.659 | 52.381 | 0.00 | 0.00 | 0.00 | 0.98 |
990 | 1329 | 4.303603 | CCTTGCATGCGCCGATCG | 62.304 | 66.667 | 14.09 | 8.51 | 42.12 | 3.69 |
1375 | 1720 | 3.333189 | CGACGCGATCCATGGCTG | 61.333 | 66.667 | 15.93 | 0.00 | 0.00 | 4.85 |
1376 | 1721 | 3.838271 | ACGACGCGATCCATGGCT | 61.838 | 61.111 | 15.93 | 0.00 | 0.00 | 4.75 |
1624 | 2006 | 6.670695 | ATACAGACATGGATGCTGTACATA | 57.329 | 37.500 | 18.14 | 6.52 | 43.31 | 2.29 |
1627 | 2009 | 9.658799 | AATATAATACAGACATGGATGCTGTAC | 57.341 | 33.333 | 18.14 | 0.00 | 43.31 | 2.90 |
1657 | 2039 | 6.451064 | AAAGTGAAACAGAAACGGAAAGAT | 57.549 | 33.333 | 0.00 | 0.00 | 41.43 | 2.40 |
1720 | 2102 | 7.822161 | AGCAAAGGATGTATAATATTGCACA | 57.178 | 32.000 | 9.83 | 2.46 | 42.95 | 4.57 |
1736 | 2118 | 7.817418 | AATTCACTAACTAACAAGCAAAGGA | 57.183 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1767 | 2149 | 5.760253 | ACCTTTGAGACATGACAACAACTAG | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1848 | 2236 | 6.884836 | GGAAGTCTTAGAAGGAAAGGCATAAA | 59.115 | 38.462 | 0.00 | 0.00 | 30.83 | 1.40 |
1932 | 2324 | 8.466798 | GCAGGGTATCATAAAGTTTGTTTATGT | 58.533 | 33.333 | 14.21 | 7.26 | 41.03 | 2.29 |
1933 | 2325 | 8.465999 | TGCAGGGTATCATAAAGTTTGTTTATG | 58.534 | 33.333 | 10.09 | 10.09 | 41.38 | 1.90 |
1934 | 2326 | 8.588290 | TGCAGGGTATCATAAAGTTTGTTTAT | 57.412 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
1935 | 2327 | 8.588290 | ATGCAGGGTATCATAAAGTTTGTTTA | 57.412 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
1936 | 2328 | 6.909550 | TGCAGGGTATCATAAAGTTTGTTT | 57.090 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1937 | 2329 | 8.632679 | CATATGCAGGGTATCATAAAGTTTGTT | 58.367 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1938 | 2330 | 7.779798 | ACATATGCAGGGTATCATAAAGTTTGT | 59.220 | 33.333 | 1.58 | 0.00 | 0.00 | 2.83 |
1939 | 2331 | 8.169977 | ACATATGCAGGGTATCATAAAGTTTG | 57.830 | 34.615 | 1.58 | 0.00 | 0.00 | 2.93 |
1946 | 2338 | 9.660544 | AGTGATATACATATGCAGGGTATCATA | 57.339 | 33.333 | 1.58 | 0.00 | 31.96 | 2.15 |
1947 | 2339 | 8.558713 | AGTGATATACATATGCAGGGTATCAT | 57.441 | 34.615 | 1.58 | 4.82 | 31.96 | 2.45 |
1948 | 2340 | 7.978099 | AGTGATATACATATGCAGGGTATCA | 57.022 | 36.000 | 1.58 | 7.19 | 0.00 | 2.15 |
1949 | 2341 | 9.920133 | CATAGTGATATACATATGCAGGGTATC | 57.080 | 37.037 | 1.58 | 4.90 | 0.00 | 2.24 |
1950 | 2342 | 9.660544 | TCATAGTGATATACATATGCAGGGTAT | 57.339 | 33.333 | 1.58 | 11.10 | 0.00 | 2.73 |
1951 | 2343 | 9.487442 | TTCATAGTGATATACATATGCAGGGTA | 57.513 | 33.333 | 1.58 | 0.00 | 0.00 | 3.69 |
1952 | 2344 | 7.978099 | TCATAGTGATATACATATGCAGGGT | 57.022 | 36.000 | 1.58 | 0.00 | 0.00 | 4.34 |
1953 | 2345 | 9.842775 | ATTTCATAGTGATATACATATGCAGGG | 57.157 | 33.333 | 1.58 | 0.00 | 0.00 | 4.45 |
1965 | 2357 | 9.887629 | CTGCATCTCCTTATTTCATAGTGATAT | 57.112 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
1984 | 2376 | 1.270414 | CCAGTCCCTCACCTGCATCT | 61.270 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1985 | 2377 | 1.222936 | CCAGTCCCTCACCTGCATC | 59.777 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
1986 | 2378 | 2.304056 | CCCAGTCCCTCACCTGCAT | 61.304 | 63.158 | 0.00 | 0.00 | 0.00 | 3.96 |
2004 | 2396 | 1.547372 | TCCGTCTTACTAGGGTGCAAC | 59.453 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
2057 | 2479 | 5.011635 | AGGAATTTCAAATTTGTTAGGGCGT | 59.988 | 36.000 | 17.47 | 4.17 | 0.00 | 5.68 |
2058 | 2480 | 5.478407 | AGGAATTTCAAATTTGTTAGGGCG | 58.522 | 37.500 | 17.47 | 0.00 | 0.00 | 6.13 |
2059 | 2481 | 6.701340 | AGAGGAATTTCAAATTTGTTAGGGC | 58.299 | 36.000 | 17.47 | 4.96 | 0.00 | 5.19 |
2072 | 2498 | 3.624777 | GGCTCAATGGAGAGGAATTTCA | 58.375 | 45.455 | 0.00 | 0.00 | 44.26 | 2.69 |
2073 | 2499 | 2.615912 | CGGCTCAATGGAGAGGAATTTC | 59.384 | 50.000 | 0.00 | 0.00 | 44.26 | 2.17 |
2084 | 2510 | 3.191162 | TGAAAAATCACTCGGCTCAATGG | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2086 | 2512 | 4.326826 | TCTGAAAAATCACTCGGCTCAAT | 58.673 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2093 | 2519 | 7.404985 | CCATTCTGTATCTGAAAAATCACTCG | 58.595 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
2094 | 2520 | 7.148188 | TGCCATTCTGTATCTGAAAAATCACTC | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2096 | 2522 | 6.749118 | GTGCCATTCTGTATCTGAAAAATCAC | 59.251 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2098 | 2524 | 6.855836 | TGTGCCATTCTGTATCTGAAAAATC | 58.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2099 | 2525 | 6.839124 | TGTGCCATTCTGTATCTGAAAAAT | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2132 | 2560 | 6.821665 | TGTTAACTTTACCTAGCATGCCTAAG | 59.178 | 38.462 | 15.66 | 9.68 | 0.00 | 2.18 |
2170 | 2598 | 3.197766 | AGGGCTCGAACATCATACTTCAA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2176 | 2604 | 2.891580 | GGAGTAGGGCTCGAACATCATA | 59.108 | 50.000 | 0.00 | 0.00 | 45.03 | 2.15 |
2199 | 2627 | 0.463295 | CGGGTGACTCGGTAGCTCTA | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2201 | 2629 | 0.745845 | TACGGGTGACTCGGTAGCTC | 60.746 | 60.000 | 10.58 | 0.00 | 0.00 | 4.09 |
2231 | 2659 | 3.383825 | GTGAAGAAGATTAGGCGGGTAGA | 59.616 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2272 | 2713 | 3.133003 | TGAGGTATAAGAGGCTTGCTGAC | 59.867 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
2276 | 2719 | 4.276926 | CCAAATGAGGTATAAGAGGCTTGC | 59.723 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
2278 | 2721 | 4.464947 | GCCAAATGAGGTATAAGAGGCTT | 58.535 | 43.478 | 0.00 | 0.00 | 36.72 | 4.35 |
2289 | 2732 | 4.623863 | AGGATTTAATGGCCAAATGAGGT | 58.376 | 39.130 | 10.96 | 0.00 | 0.00 | 3.85 |
2296 | 2739 | 2.584965 | TGGAGGAGGATTTAATGGCCAA | 59.415 | 45.455 | 10.96 | 0.00 | 0.00 | 4.52 |
2332 | 2775 | 5.726308 | TCATCTGATCAGGGTTAGGAAAAGA | 59.274 | 40.000 | 22.42 | 0.00 | 0.00 | 2.52 |
2376 | 2819 | 2.467566 | AGTTGGACGGGTATGAACAC | 57.532 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2377 | 2820 | 2.234414 | GGTAGTTGGACGGGTATGAACA | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2378 | 2821 | 2.736400 | CGGTAGTTGGACGGGTATGAAC | 60.736 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
2379 | 2822 | 1.477700 | CGGTAGTTGGACGGGTATGAA | 59.522 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
2380 | 2823 | 1.105457 | CGGTAGTTGGACGGGTATGA | 58.895 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2381 | 2824 | 1.105457 | TCGGTAGTTGGACGGGTATG | 58.895 | 55.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2411 | 2854 | 1.681486 | TTGACGTGAGACTGGCACCA | 61.681 | 55.000 | 0.00 | 0.00 | 32.74 | 4.17 |
2412 | 2855 | 0.946221 | CTTGACGTGAGACTGGCACC | 60.946 | 60.000 | 0.00 | 0.00 | 32.74 | 5.01 |
2422 | 2865 | 1.601419 | GACGGGGGATCTTGACGTGA | 61.601 | 60.000 | 0.00 | 0.00 | 37.96 | 4.35 |
2426 | 2869 | 1.993391 | TGGGACGGGGGATCTTGAC | 60.993 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
2443 | 2886 | 1.662686 | AGAAGGGGGAGGAAGAAGTG | 58.337 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2470 | 2913 | 5.136048 | AGGAGGAGGAAGTGATTCTCTAGAT | 59.864 | 44.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2474 | 2917 | 3.629796 | GGAGGAGGAGGAAGTGATTCTCT | 60.630 | 52.174 | 0.00 | 0.00 | 0.00 | 3.10 |
2482 | 2925 | 0.793617 | TGGAAGGAGGAGGAGGAAGT | 59.206 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2487 | 2930 | 0.911525 | TGGCTTGGAAGGAGGAGGAG | 60.912 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2502 | 2945 | 3.435275 | TCATAGAGACTCACTGTTGGCT | 58.565 | 45.455 | 5.02 | 0.00 | 0.00 | 4.75 |
2503 | 2946 | 3.876274 | TCATAGAGACTCACTGTTGGC | 57.124 | 47.619 | 5.02 | 0.00 | 0.00 | 4.52 |
2507 | 2950 | 4.079500 | TCCCTGATCATAGAGACTCACTGT | 60.080 | 45.833 | 5.02 | 0.00 | 0.00 | 3.55 |
2508 | 2951 | 4.468713 | TCCCTGATCATAGAGACTCACTG | 58.531 | 47.826 | 5.02 | 1.70 | 0.00 | 3.66 |
2509 | 2952 | 4.728772 | CTCCCTGATCATAGAGACTCACT | 58.271 | 47.826 | 14.19 | 0.00 | 0.00 | 3.41 |
2510 | 2953 | 3.255642 | GCTCCCTGATCATAGAGACTCAC | 59.744 | 52.174 | 20.73 | 4.43 | 0.00 | 3.51 |
2511 | 2954 | 3.117360 | TGCTCCCTGATCATAGAGACTCA | 60.117 | 47.826 | 20.73 | 10.07 | 0.00 | 3.41 |
2512 | 2955 | 3.495331 | TGCTCCCTGATCATAGAGACTC | 58.505 | 50.000 | 20.73 | 0.00 | 0.00 | 3.36 |
2513 | 2956 | 3.609256 | TGCTCCCTGATCATAGAGACT | 57.391 | 47.619 | 20.73 | 0.00 | 0.00 | 3.24 |
2514 | 2957 | 4.679373 | TTTGCTCCCTGATCATAGAGAC | 57.321 | 45.455 | 20.73 | 13.99 | 0.00 | 3.36 |
2524 | 2967 | 3.517296 | TGGTGTAATTTTGCTCCCTGA | 57.483 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
2566 | 3009 | 4.080582 | CACAGATACCATGACCCTTGGTTA | 60.081 | 45.833 | 9.35 | 0.00 | 45.19 | 2.85 |
2576 | 3019 | 8.218423 | ACCAATATTATCCACAGATACCATGA | 57.782 | 34.615 | 0.00 | 0.00 | 34.63 | 3.07 |
2577 | 3020 | 9.605275 | CTACCAATATTATCCACAGATACCATG | 57.395 | 37.037 | 0.00 | 0.00 | 34.63 | 3.66 |
2578 | 3021 | 9.560860 | TCTACCAATATTATCCACAGATACCAT | 57.439 | 33.333 | 0.00 | 0.00 | 34.63 | 3.55 |
2579 | 3022 | 8.966155 | TCTACCAATATTATCCACAGATACCA | 57.034 | 34.615 | 0.00 | 0.00 | 34.63 | 3.25 |
2580 | 3023 | 9.823647 | CATCTACCAATATTATCCACAGATACC | 57.176 | 37.037 | 0.00 | 0.00 | 34.63 | 2.73 |
2645 | 3089 | 6.480763 | TGAAGCCTTCCATGTTATAAGTTCA | 58.519 | 36.000 | 1.21 | 0.00 | 0.00 | 3.18 |
2646 | 3090 | 6.599638 | ACTGAAGCCTTCCATGTTATAAGTTC | 59.400 | 38.462 | 1.21 | 0.00 | 0.00 | 3.01 |
2664 | 3108 | 8.579682 | AGAAAATTTCACATTGTTACTGAAGC | 57.420 | 30.769 | 8.55 | 0.00 | 0.00 | 3.86 |
2717 | 3161 | 6.530601 | ACAATATTGCCCCTTCTTACCTAT | 57.469 | 37.500 | 15.48 | 0.00 | 0.00 | 2.57 |
2745 | 3189 | 8.917088 | CCTCACTTGGGATTATGTTTAAATGAT | 58.083 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
2747 | 3191 | 8.066612 | ACCTCACTTGGGATTATGTTTAAATG | 57.933 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2748 | 3192 | 8.116026 | AGACCTCACTTGGGATTATGTTTAAAT | 58.884 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2753 | 3197 | 5.520748 | AAGACCTCACTTGGGATTATGTT | 57.479 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
2835 | 3280 | 9.104713 | AGATATCTGTTTTTCCCCTGAATTTTT | 57.895 | 29.630 | 3.89 | 0.00 | 0.00 | 1.94 |
2839 | 3284 | 7.364144 | GCAAAGATATCTGTTTTTCCCCTGAAT | 60.364 | 37.037 | 5.86 | 0.00 | 0.00 | 2.57 |
2840 | 3285 | 6.071391 | GCAAAGATATCTGTTTTTCCCCTGAA | 60.071 | 38.462 | 5.86 | 0.00 | 0.00 | 3.02 |
2853 | 3298 | 4.724074 | TGCTTTTGGGCAAAGATATCTG | 57.276 | 40.909 | 5.86 | 0.00 | 44.40 | 2.90 |
2854 | 3299 | 5.945144 | AATGCTTTTGGGCAAAGATATCT | 57.055 | 34.783 | 0.00 | 0.00 | 44.40 | 1.98 |
2856 | 3301 | 6.052405 | TCAAATGCTTTTGGGCAAAGATAT | 57.948 | 33.333 | 21.07 | 0.00 | 44.40 | 1.63 |
2858 | 3303 | 4.354893 | TCAAATGCTTTTGGGCAAAGAT | 57.645 | 36.364 | 21.07 | 0.00 | 44.40 | 2.40 |
2859 | 3304 | 3.834489 | TCAAATGCTTTTGGGCAAAGA | 57.166 | 38.095 | 21.07 | 1.68 | 44.40 | 2.52 |
2860 | 3305 | 4.897025 | TTTCAAATGCTTTTGGGCAAAG | 57.103 | 36.364 | 21.07 | 0.00 | 45.68 | 2.77 |
2864 | 3309 | 6.271566 | TGAAAATTTTCAAATGCTTTTGGGC | 58.728 | 32.000 | 27.22 | 0.38 | 43.62 | 5.36 |
2899 | 3346 | 7.930513 | ACTTTCCTCGAATTCAACAAAATTC | 57.069 | 32.000 | 6.22 | 0.00 | 40.63 | 2.17 |
2902 | 3349 | 7.093992 | ACAAACTTTCCTCGAATTCAACAAAA | 58.906 | 30.769 | 6.22 | 0.31 | 0.00 | 2.44 |
2927 | 3374 | 3.254657 | CCAGCCAGAATTTACGGTTTTGA | 59.745 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2935 | 3382 | 9.140286 | GAAAGAAAAATACCAGCCAGAATTTAC | 57.860 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3023 | 3476 | 2.060383 | GGAGCAAAATGGAGGGCCC | 61.060 | 63.158 | 16.46 | 16.46 | 0.00 | 5.80 |
3095 | 3548 | 5.552870 | ACACAGTTTCTCCTACATGTTCT | 57.447 | 39.130 | 2.30 | 0.00 | 0.00 | 3.01 |
3166 | 3627 | 6.732896 | TTTCCACTGCCCATAGTTTTTAAA | 57.267 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
3181 | 3642 | 4.307432 | AGAGTGAACGTACATTTCCACTG | 58.693 | 43.478 | 1.28 | 0.00 | 0.00 | 3.66 |
3182 | 3643 | 4.557205 | GAGAGTGAACGTACATTTCCACT | 58.443 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
3207 | 3668 | 2.446994 | TCAGTTGGGTGGGACCGT | 60.447 | 61.111 | 0.00 | 0.00 | 39.83 | 4.83 |
3208 | 3669 | 2.347490 | CTCAGTTGGGTGGGACCG | 59.653 | 66.667 | 0.00 | 0.00 | 39.83 | 4.79 |
3209 | 3670 | 2.034221 | GCTCAGTTGGGTGGGACC | 59.966 | 66.667 | 0.00 | 0.00 | 37.60 | 4.46 |
3210 | 3671 | 1.003233 | GAGCTCAGTTGGGTGGGAC | 60.003 | 63.158 | 9.40 | 0.00 | 0.00 | 4.46 |
3211 | 3672 | 1.059584 | TTGAGCTCAGTTGGGTGGGA | 61.060 | 55.000 | 17.43 | 0.00 | 0.00 | 4.37 |
3212 | 3673 | 0.890996 | GTTGAGCTCAGTTGGGTGGG | 60.891 | 60.000 | 17.43 | 0.00 | 0.00 | 4.61 |
3213 | 3674 | 0.109342 | AGTTGAGCTCAGTTGGGTGG | 59.891 | 55.000 | 17.43 | 0.00 | 0.00 | 4.61 |
3214 | 3675 | 2.839486 | TAGTTGAGCTCAGTTGGGTG | 57.161 | 50.000 | 17.43 | 0.00 | 0.00 | 4.61 |
3232 | 3693 | 6.999950 | ACACGGTGCAAATATGGAGTATATA | 58.000 | 36.000 | 8.30 | 0.00 | 31.68 | 0.86 |
3243 | 3704 | 2.665649 | ATCGAGACACGGTGCAAATA | 57.334 | 45.000 | 8.30 | 0.00 | 42.82 | 1.40 |
3321 | 3782 | 5.499139 | TCGACAGTCTTTTGAGCAAAAAT | 57.501 | 34.783 | 9.39 | 0.00 | 39.49 | 1.82 |
3380 | 3841 | 8.946085 | GGATCATGTGATACTCAAGTAAAAACA | 58.054 | 33.333 | 0.00 | 0.74 | 34.37 | 2.83 |
3384 | 3845 | 7.125659 | TCCAGGATCATGTGATACTCAAGTAAA | 59.874 | 37.037 | 6.62 | 0.00 | 41.82 | 2.01 |
3451 | 3914 | 0.036388 | CATAATAGGGGCGCGACCAT | 60.036 | 55.000 | 35.87 | 31.47 | 42.05 | 3.55 |
3543 | 4019 | 4.388165 | CGCATATCTTTCTCCATGCTACTG | 59.612 | 45.833 | 4.15 | 0.00 | 41.25 | 2.74 |
3544 | 4020 | 4.564041 | CGCATATCTTTCTCCATGCTACT | 58.436 | 43.478 | 4.15 | 0.00 | 41.25 | 2.57 |
3545 | 4021 | 3.124297 | GCGCATATCTTTCTCCATGCTAC | 59.876 | 47.826 | 0.30 | 0.00 | 41.25 | 3.58 |
3646 | 4122 | 8.671028 | GTGACTTGAGTTAGAAACAAAAAGGTA | 58.329 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
3647 | 4123 | 7.535997 | GTGACTTGAGTTAGAAACAAAAAGGT | 58.464 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
3648 | 4124 | 6.687105 | CGTGACTTGAGTTAGAAACAAAAAGG | 59.313 | 38.462 | 0.00 | 0.00 | 0.00 | 3.11 |
3649 | 4125 | 6.194692 | GCGTGACTTGAGTTAGAAACAAAAAG | 59.805 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
3650 | 4126 | 6.025280 | GCGTGACTTGAGTTAGAAACAAAAA | 58.975 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3696 | 4172 | 3.829026 | AGCAAGATAGAGCCGACATGATA | 59.171 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
3697 | 4173 | 2.632028 | AGCAAGATAGAGCCGACATGAT | 59.368 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
3725 | 4201 | 0.388134 | TTACGTGAAGCGCTGGAGAC | 60.388 | 55.000 | 12.58 | 4.36 | 46.11 | 3.36 |
3781 | 4261 | 3.464907 | GAGTAGAGACACATGCATGCAT | 58.535 | 45.455 | 27.46 | 27.46 | 37.08 | 3.96 |
3782 | 4262 | 2.419159 | GGAGTAGAGACACATGCATGCA | 60.419 | 50.000 | 26.53 | 25.04 | 0.00 | 3.96 |
3783 | 4263 | 2.208431 | GGAGTAGAGACACATGCATGC | 58.792 | 52.381 | 26.53 | 11.82 | 0.00 | 4.06 |
3784 | 4264 | 3.118847 | AGTGGAGTAGAGACACATGCATG | 60.119 | 47.826 | 25.09 | 25.09 | 37.58 | 4.06 |
3785 | 4265 | 3.102972 | AGTGGAGTAGAGACACATGCAT | 58.897 | 45.455 | 0.00 | 0.00 | 37.58 | 3.96 |
3819 | 4299 | 4.517453 | AGCTAGCTAGGAAACTACTCATCG | 59.483 | 45.833 | 17.69 | 0.00 | 43.67 | 3.84 |
3972 | 4456 | 6.494893 | ACATGAAGCACGAAAGCTAATTAA | 57.505 | 33.333 | 0.00 | 0.00 | 45.89 | 1.40 |
3973 | 4457 | 6.238103 | GCTACATGAAGCACGAAAGCTAATTA | 60.238 | 38.462 | 0.00 | 0.00 | 45.89 | 1.40 |
3974 | 4458 | 5.447818 | GCTACATGAAGCACGAAAGCTAATT | 60.448 | 40.000 | 0.00 | 0.00 | 45.89 | 1.40 |
3975 | 4459 | 4.034510 | GCTACATGAAGCACGAAAGCTAAT | 59.965 | 41.667 | 0.00 | 0.00 | 45.89 | 1.73 |
4162 | 4647 | 3.686016 | TGAAACTCAGATAGGGCAAACC | 58.314 | 45.455 | 0.00 | 0.00 | 40.67 | 3.27 |
4423 | 4908 | 4.214971 | AGCAAACTCAGTTTCTAGCACATG | 59.785 | 41.667 | 12.28 | 0.00 | 33.10 | 3.21 |
4428 | 4924 | 5.468409 | AGAAGAAGCAAACTCAGTTTCTAGC | 59.532 | 40.000 | 0.00 | 1.11 | 35.84 | 3.42 |
4456 | 4952 | 7.813627 | ACGGCAAACTAAGTTTCACTTTAAAAA | 59.186 | 29.630 | 0.00 | 0.00 | 39.51 | 1.94 |
4457 | 4953 | 7.314393 | ACGGCAAACTAAGTTTCACTTTAAAA | 58.686 | 30.769 | 0.00 | 0.00 | 39.51 | 1.52 |
4458 | 4954 | 6.854778 | ACGGCAAACTAAGTTTCACTTTAAA | 58.145 | 32.000 | 0.00 | 0.00 | 39.51 | 1.52 |
4459 | 4955 | 6.439675 | ACGGCAAACTAAGTTTCACTTTAA | 57.560 | 33.333 | 0.00 | 0.00 | 39.51 | 1.52 |
4460 | 4956 | 7.551035 | TTACGGCAAACTAAGTTTCACTTTA | 57.449 | 32.000 | 0.00 | 0.00 | 39.51 | 1.85 |
4461 | 4957 | 4.976224 | ACGGCAAACTAAGTTTCACTTT | 57.024 | 36.364 | 0.00 | 0.00 | 39.51 | 2.66 |
4462 | 4958 | 6.439675 | TTTACGGCAAACTAAGTTTCACTT | 57.560 | 33.333 | 0.00 | 0.00 | 41.97 | 3.16 |
4463 | 4959 | 6.439675 | TTTTACGGCAAACTAAGTTTCACT | 57.560 | 33.333 | 0.00 | 0.00 | 33.10 | 3.41 |
4464 | 4960 | 7.136772 | AGATTTTACGGCAAACTAAGTTTCAC | 58.863 | 34.615 | 0.00 | 0.00 | 33.10 | 3.18 |
4465 | 4961 | 7.266922 | AGATTTTACGGCAAACTAAGTTTCA | 57.733 | 32.000 | 0.00 | 0.00 | 33.10 | 2.69 |
4466 | 4962 | 8.715088 | TCTAGATTTTACGGCAAACTAAGTTTC | 58.285 | 33.333 | 0.00 | 0.00 | 33.10 | 2.78 |
4467 | 4963 | 8.611654 | TCTAGATTTTACGGCAAACTAAGTTT | 57.388 | 30.769 | 0.00 | 0.00 | 36.05 | 2.66 |
4468 | 4964 | 8.665685 | CATCTAGATTTTACGGCAAACTAAGTT | 58.334 | 33.333 | 1.33 | 0.00 | 0.00 | 2.66 |
4469 | 4965 | 7.201617 | GCATCTAGATTTTACGGCAAACTAAGT | 60.202 | 37.037 | 1.33 | 0.00 | 0.00 | 2.24 |
4470 | 4966 | 7.011482 | AGCATCTAGATTTTACGGCAAACTAAG | 59.989 | 37.037 | 1.33 | 0.00 | 0.00 | 2.18 |
4471 | 4967 | 6.821665 | AGCATCTAGATTTTACGGCAAACTAA | 59.178 | 34.615 | 1.33 | 0.00 | 0.00 | 2.24 |
4472 | 4968 | 6.346096 | AGCATCTAGATTTTACGGCAAACTA | 58.654 | 36.000 | 1.33 | 0.00 | 0.00 | 2.24 |
4473 | 4969 | 5.186198 | AGCATCTAGATTTTACGGCAAACT | 58.814 | 37.500 | 1.33 | 0.00 | 0.00 | 2.66 |
4474 | 4970 | 5.485662 | AGCATCTAGATTTTACGGCAAAC | 57.514 | 39.130 | 1.33 | 0.00 | 0.00 | 2.93 |
4475 | 4971 | 7.801716 | AATAGCATCTAGATTTTACGGCAAA | 57.198 | 32.000 | 1.33 | 0.00 | 0.00 | 3.68 |
4476 | 4972 | 7.386848 | GGTAATAGCATCTAGATTTTACGGCAA | 59.613 | 37.037 | 1.33 | 0.00 | 0.00 | 4.52 |
4477 | 4973 | 6.872020 | GGTAATAGCATCTAGATTTTACGGCA | 59.128 | 38.462 | 1.33 | 0.00 | 0.00 | 5.69 |
4478 | 4974 | 6.872020 | TGGTAATAGCATCTAGATTTTACGGC | 59.128 | 38.462 | 1.33 | 2.31 | 0.00 | 5.68 |
4479 | 4975 | 7.331193 | GGTGGTAATAGCATCTAGATTTTACGG | 59.669 | 40.741 | 1.33 | 0.00 | 0.00 | 4.02 |
4480 | 4976 | 8.088981 | AGGTGGTAATAGCATCTAGATTTTACG | 58.911 | 37.037 | 3.06 | 0.00 | 34.92 | 3.18 |
4481 | 4977 | 9.780186 | AAGGTGGTAATAGCATCTAGATTTTAC | 57.220 | 33.333 | 5.60 | 8.78 | 35.77 | 2.01 |
4482 | 4978 | 9.998106 | GAAGGTGGTAATAGCATCTAGATTTTA | 57.002 | 33.333 | 5.60 | 0.00 | 35.77 | 1.52 |
4488 | 4984 | 7.540474 | TTAGGAAGGTGGTAATAGCATCTAG | 57.460 | 40.000 | 5.60 | 0.00 | 35.77 | 2.43 |
4491 | 4987 | 9.740710 | ATATTTTAGGAAGGTGGTAATAGCATC | 57.259 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
4521 | 5017 | 8.018537 | TGGATGTATTGTACTAGCACATACTT | 57.981 | 34.615 | 14.07 | 1.46 | 32.66 | 2.24 |
4529 | 5108 | 9.884465 | GAAAATGATTGGATGTATTGTACTAGC | 57.116 | 33.333 | 0.00 | 0.00 | 0.00 | 3.42 |
4544 | 5123 | 9.289303 | CGTCAATTAGTAAAGGAAAATGATTGG | 57.711 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
4565 | 5144 | 4.837896 | TTTGCACATATCCAAACGTCAA | 57.162 | 36.364 | 0.00 | 0.00 | 0.00 | 3.18 |
4566 | 5145 | 4.837896 | TTTTGCACATATCCAAACGTCA | 57.162 | 36.364 | 0.00 | 0.00 | 31.30 | 4.35 |
4603 | 5182 | 6.920210 | CCCTTGAGAAAACAAATTCTTCACTC | 59.080 | 38.462 | 0.00 | 0.00 | 39.70 | 3.51 |
4612 | 5191 | 8.534496 | CCAATATCTTCCCTTGAGAAAACAAAT | 58.466 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
4616 | 5196 | 5.418840 | TGCCAATATCTTCCCTTGAGAAAAC | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4620 | 5200 | 4.413189 | TGATGCCAATATCTTCCCTTGAGA | 59.587 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
4635 | 5215 | 7.804843 | ATTTTCAAGACAAATTTGATGCCAA | 57.195 | 28.000 | 24.64 | 14.06 | 34.76 | 4.52 |
4713 | 5293 | 9.436957 | GTCTCCAGTTCATAATTTTCACTCTTA | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
4714 | 5294 | 7.391833 | GGTCTCCAGTTCATAATTTTCACTCTT | 59.608 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
4715 | 5295 | 6.881602 | GGTCTCCAGTTCATAATTTTCACTCT | 59.118 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
4716 | 5296 | 6.655003 | TGGTCTCCAGTTCATAATTTTCACTC | 59.345 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
4717 | 5297 | 6.542821 | TGGTCTCCAGTTCATAATTTTCACT | 58.457 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4730 | 5310 | 2.887152 | GCTTTTGACATGGTCTCCAGTT | 59.113 | 45.455 | 0.00 | 0.00 | 36.75 | 3.16 |
4737 | 5317 | 5.824904 | ATGATGTAGCTTTTGACATGGTC | 57.175 | 39.130 | 4.58 | 0.00 | 36.42 | 4.02 |
4750 | 5330 | 6.488006 | ACTCCCAATGTTCATTATGATGTAGC | 59.512 | 38.462 | 0.00 | 0.00 | 34.77 | 3.58 |
4754 | 5334 | 5.508489 | GGCACTCCCAATGTTCATTATGATG | 60.508 | 44.000 | 0.00 | 0.00 | 34.46 | 3.07 |
4760 | 5340 | 2.307496 | TGGCACTCCCAATGTTCATT | 57.693 | 45.000 | 0.00 | 0.00 | 41.82 | 2.57 |
4792 | 5379 | 8.845227 | TGCAAAGAAGAAATTAACACTGATACA | 58.155 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
4793 | 5380 | 9.334693 | CTGCAAAGAAGAAATTAACACTGATAC | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4806 | 5393 | 4.466015 | ACTTGAAACCCTGCAAAGAAGAAA | 59.534 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
4810 | 5397 | 3.360867 | TGACTTGAAACCCTGCAAAGAA | 58.639 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
4812 | 5399 | 3.491447 | CCTTGACTTGAAACCCTGCAAAG | 60.491 | 47.826 | 0.00 | 0.00 | 0.00 | 2.77 |
4813 | 5400 | 2.430332 | CCTTGACTTGAAACCCTGCAAA | 59.570 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
5058 | 5654 | 1.275291 | CGGGTTGGAGAACAGCTAAGA | 59.725 | 52.381 | 0.00 | 0.00 | 33.27 | 2.10 |
5076 | 5672 | 5.365403 | TTTGGTGTAAGCTTAATCAACGG | 57.635 | 39.130 | 7.99 | 0.00 | 33.76 | 4.44 |
5077 | 5673 | 6.435428 | AGTTTTGGTGTAAGCTTAATCAACG | 58.565 | 36.000 | 7.99 | 0.00 | 33.76 | 4.10 |
5247 | 5858 | 7.979537 | ACGCAACTATTATTGACTTACTCATGA | 59.020 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
5321 | 5932 | 0.957888 | GCAGGCCAGTCTCTTCAACC | 60.958 | 60.000 | 5.01 | 0.00 | 0.00 | 3.77 |
5451 | 6062 | 6.223852 | AGCGAACGAATTTAGATGGTGATAT | 58.776 | 36.000 | 0.00 | 0.00 | 0.00 | 1.63 |
5452 | 6063 | 5.597806 | AGCGAACGAATTTAGATGGTGATA | 58.402 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
5453 | 6064 | 4.442706 | AGCGAACGAATTTAGATGGTGAT | 58.557 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
5454 | 6065 | 3.857052 | AGCGAACGAATTTAGATGGTGA | 58.143 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
5455 | 6066 | 3.001330 | GGAGCGAACGAATTTAGATGGTG | 59.999 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
5456 | 6067 | 3.195661 | GGAGCGAACGAATTTAGATGGT | 58.804 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
5458 | 6069 | 2.218759 | CCGGAGCGAACGAATTTAGATG | 59.781 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5462 | 6080 | 2.466846 | GATCCGGAGCGAACGAATTTA | 58.533 | 47.619 | 11.34 | 0.00 | 0.00 | 1.40 |
5464 | 6082 | 0.870307 | CGATCCGGAGCGAACGAATT | 60.870 | 55.000 | 37.30 | 0.09 | 43.75 | 2.17 |
5484 | 6103 | 7.802251 | CAGAAGTTGAGTTGATTGAGAAATCAC | 59.198 | 37.037 | 0.73 | 0.00 | 38.76 | 3.06 |
5568 | 6187 | 8.610896 | CACATCAAAGCCAAAAACAAAGATAAA | 58.389 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5569 | 6188 | 7.768120 | ACACATCAAAGCCAAAAACAAAGATAA | 59.232 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
5570 | 6189 | 7.271511 | ACACATCAAAGCCAAAAACAAAGATA | 58.728 | 30.769 | 0.00 | 0.00 | 0.00 | 1.98 |
5571 | 6190 | 6.114767 | ACACATCAAAGCCAAAAACAAAGAT | 58.885 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5572 | 6191 | 5.486526 | ACACATCAAAGCCAAAAACAAAGA | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5573 | 6192 | 5.799681 | ACACATCAAAGCCAAAAACAAAG | 57.200 | 34.783 | 0.00 | 0.00 | 0.00 | 2.77 |
5576 | 6195 | 5.752472 | CACATACACATCAAAGCCAAAAACA | 59.248 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5592 | 6211 | 3.118738 | ACCTAAGCTACCTGCACATACAC | 60.119 | 47.826 | 0.00 | 0.00 | 45.94 | 2.90 |
5610 | 6229 | 0.771127 | ACTTTTGCAGCTCCCACCTA | 59.229 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
5611 | 6230 | 0.825010 | CACTTTTGCAGCTCCCACCT | 60.825 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5612 | 6231 | 1.662044 | CACTTTTGCAGCTCCCACC | 59.338 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
5627 | 6246 | 9.942850 | TGTATATGCATGTATATACTTTGCACT | 57.057 | 29.630 | 34.43 | 24.36 | 43.39 | 4.40 |
5652 | 6271 | 4.923871 | GTGTGATTAGGCGTCAGGTATATG | 59.076 | 45.833 | 0.00 | 0.00 | 0.00 | 1.78 |
5653 | 6272 | 4.321008 | CGTGTGATTAGGCGTCAGGTATAT | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 0.86 |
5699 | 6320 | 7.492020 | CCAGATCTTCTTATTTCTCTGTGTCTG | 59.508 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
5703 | 6324 | 8.961294 | AATCCAGATCTTCTTATTTCTCTGTG | 57.039 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
5705 | 6326 | 9.610705 | TTGAATCCAGATCTTCTTATTTCTCTG | 57.389 | 33.333 | 0.00 | 0.00 | 0.00 | 3.35 |
5817 | 6438 | 8.877808 | TTGAGTATACAATATCAGCTCAACAG | 57.122 | 34.615 | 5.50 | 0.00 | 36.82 | 3.16 |
5887 | 6516 | 5.509501 | GCACAGGAATGAATCTTTGGAAACA | 60.510 | 40.000 | 0.00 | 0.00 | 39.83 | 2.83 |
5890 | 6519 | 4.151121 | TGCACAGGAATGAATCTTTGGAA | 58.849 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
5897 | 6526 | 7.444629 | ACATACATATGCACAGGAATGAATC | 57.555 | 36.000 | 1.58 | 0.00 | 37.19 | 2.52 |
5930 | 6559 | 1.597742 | CCGTAGAAGGCCATGGAATG | 58.402 | 55.000 | 18.40 | 0.00 | 46.21 | 2.67 |
5956 | 6585 | 5.166398 | GCATCTCCTTTTCTTTGGTCATTG | 58.834 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
5972 | 6601 | 2.894387 | GCAGAGGTGCGCATCTCC | 60.894 | 66.667 | 39.80 | 25.57 | 39.36 | 3.71 |
6008 | 6637 | 2.385315 | CTATGGACGACAGCACATACG | 58.615 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
6018 | 6647 | 4.024387 | TGAAACAAAACAGCTATGGACGAC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
6019 | 6648 | 4.130857 | TGAAACAAAACAGCTATGGACGA | 58.869 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
6020 | 6649 | 4.481930 | TGAAACAAAACAGCTATGGACG | 57.518 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
6108 | 6742 | 2.166459 | CAGCACTAGAGATTCCGTTCCA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6140 | 6774 | 9.357161 | AGTTTGGTGTACCTAATTTGATACAAA | 57.643 | 29.630 | 0.00 | 0.00 | 33.61 | 2.83 |
6274 | 6950 | 1.227645 | CTGCGCCATAGCTGCCTAA | 60.228 | 57.895 | 4.18 | 0.00 | 37.61 | 2.69 |
6288 | 6964 | 5.050363 | ACCGTTTGCATAACTATAATCTGCG | 60.050 | 40.000 | 9.17 | 0.00 | 35.63 | 5.18 |
6310 | 6986 | 0.326927 | TTGCACCAGTAAGGCCTACC | 59.673 | 55.000 | 5.16 | 0.00 | 43.14 | 3.18 |
6348 | 7024 | 5.163131 | GGCTTTACCCTGATATTTGACCCTA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6397 | 7073 | 0.252197 | AGTAGGTGGTCGGCAATTCC | 59.748 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6557 | 7233 | 6.043938 | TCTGTAGTTCCTCTGGGTGTTAAAAT | 59.956 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
6585 | 7261 | 2.495669 | TGGTCGACTATGAACTGCATCA | 59.504 | 45.455 | 16.46 | 0.00 | 38.44 | 3.07 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.