Multiple sequence alignment - TraesCS4B01G346100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G346100 chr4B 100.000 6608 0 0 1 6608 639853066 639846459 0.000000e+00 12203.0
1 TraesCS4B01G346100 chr4B 92.490 253 19 0 971 1223 154978918 154978666 4.870000e-96 363.0
2 TraesCS4B01G346100 chr5A 89.731 3827 228 93 679 4423 678273949 678270206 0.000000e+00 4737.0
3 TraesCS4B01G346100 chr5A 90.360 1473 63 33 4795 6245 678269815 678268400 0.000000e+00 1860.0
4 TraesCS4B01G346100 chr5A 91.248 617 36 7 4 608 678274949 678274339 0.000000e+00 824.0
5 TraesCS4B01G346100 chr5A 86.314 548 46 11 971 1492 649696159 649695615 2.670000e-158 569.0
6 TraesCS4B01G346100 chr5A 90.934 364 32 1 6245 6608 678268364 678268002 7.700000e-134 488.0
7 TraesCS4B01G346100 chr5A 98.000 50 1 0 633 682 678274024 678273975 3.280000e-13 87.9
8 TraesCS4B01G346100 chr4D 89.165 3867 208 74 2432 6245 497947998 497944290 0.000000e+00 4625.0
9 TraesCS4B01G346100 chr4D 90.038 2339 122 43 4 2267 497950356 497948054 0.000000e+00 2926.0
10 TraesCS4B01G346100 chr4D 94.199 362 21 0 6247 6608 497944248 497943887 2.690000e-153 553.0
11 TraesCS4B01G346100 chr7A 90.476 525 34 6 979 1492 652373163 652373682 0.000000e+00 678.0
12 TraesCS4B01G346100 chr7A 90.724 442 31 3 979 1413 107669179 107668741 1.240000e-161 580.0
13 TraesCS4B01G346100 chr3A 89.955 448 41 3 971 1414 22386993 22386546 5.750000e-160 575.0
14 TraesCS4B01G346100 chr6B 85.609 542 57 9 973 1499 608273851 608274386 3.480000e-152 549.0
15 TraesCS4B01G346100 chrUn 92.095 253 20 0 971 1223 471169934 471170186 2.270000e-94 357.0
16 TraesCS4B01G346100 chrUn 83.430 344 34 12 1006 1333 205346676 205346340 1.390000e-76 298.0
17 TraesCS4B01G346100 chrUn 83.140 344 35 13 1006 1333 349933070 349933406 6.480000e-75 292.0
18 TraesCS4B01G346100 chr5B 92.754 69 2 2 1425 1492 531180140 531180074 5.450000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G346100 chr4B 639846459 639853066 6607 True 12203.000000 12203 100.0000 1 6608 1 chr4B.!!$R2 6607
1 TraesCS4B01G346100 chr5A 678268002 678274949 6947 True 1599.380000 4737 92.0546 4 6608 5 chr5A.!!$R2 6604
2 TraesCS4B01G346100 chr5A 649695615 649696159 544 True 569.000000 569 86.3140 971 1492 1 chr5A.!!$R1 521
3 TraesCS4B01G346100 chr4D 497943887 497950356 6469 True 2701.333333 4625 91.1340 4 6608 3 chr4D.!!$R1 6604
4 TraesCS4B01G346100 chr7A 652373163 652373682 519 False 678.000000 678 90.4760 979 1492 1 chr7A.!!$F1 513
5 TraesCS4B01G346100 chr6B 608273851 608274386 535 False 549.000000 549 85.6090 973 1499 1 chr6B.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 428 0.184933 TTCTTGGGGTGTGGGTTCTG 59.815 55.0 0.00 0.00 0.00 3.02 F
2002 2394 0.177604 GAGATGCAGGTGAGGGACTG 59.822 60.0 0.00 0.00 41.55 3.51 F
2199 2627 0.032017 ATGTTCGAGCCCTACTCCCT 60.032 55.0 0.00 0.00 43.01 4.20 F
3232 3693 0.109342 CCACCCAACTGAGCTCAACT 59.891 55.0 18.85 4.52 0.00 3.16 F
4976 5564 0.827368 TGCACCGTACCTATCATGCA 59.173 50.0 0.00 0.00 40.57 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2627 0.463295 CGGGTGACTCGGTAGCTCTA 60.463 60.000 0.00 0.00 0.00 2.43 R
3451 3914 0.036388 CATAATAGGGGCGCGACCAT 60.036 55.000 35.87 31.47 42.05 3.55 R
3725 4201 0.388134 TTACGTGAAGCGCTGGAGAC 60.388 55.000 12.58 4.36 46.11 3.36 R
5058 5654 1.275291 CGGGTTGGAGAACAGCTAAGA 59.725 52.381 0.00 0.00 33.27 2.10 R
6397 7073 0.252197 AGTAGGTGGTCGGCAATTCC 59.748 55.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 155 8.321353 TGGATTACACTCTTGATACTGTTTCAT 58.679 33.333 1.81 0.00 0.00 2.57
183 186 5.731591 AGTAATCTTCTTTTACCTCGGTGG 58.268 41.667 0.00 0.00 42.93 4.61
228 231 6.790825 GCTTTCTAGAACGTTGTTTACATCAC 59.209 38.462 5.00 0.00 0.00 3.06
328 331 1.742761 TGCTGGAGTATGCTTCAAGC 58.257 50.000 1.04 1.04 42.82 4.01
423 428 0.184933 TTCTTGGGGTGTGGGTTCTG 59.815 55.000 0.00 0.00 0.00 3.02
453 458 7.097017 TTGGAACACAAGGTAGAGACCACAA 62.097 44.000 0.00 0.00 44.51 3.33
454 459 8.330617 TTGGAACACAAGGTAGAGACCACAAT 62.331 42.308 0.00 0.00 44.51 2.71
474 479 0.817013 ATGGTGCAATTTGGTAGGCG 59.183 50.000 0.00 0.00 0.00 5.52
551 560 1.771255 ACCAGCCTTATCATGACCCTC 59.229 52.381 0.00 0.00 0.00 4.30
609 624 3.947834 CCCAAACTCTCTCTCTCTCTCTC 59.052 52.174 0.00 0.00 0.00 3.20
610 625 4.324563 CCCAAACTCTCTCTCTCTCTCTCT 60.325 50.000 0.00 0.00 0.00 3.10
611 626 4.878397 CCAAACTCTCTCTCTCTCTCTCTC 59.122 50.000 0.00 0.00 0.00 3.20
612 627 5.338708 CCAAACTCTCTCTCTCTCTCTCTCT 60.339 48.000 0.00 0.00 0.00 3.10
613 628 5.606348 AACTCTCTCTCTCTCTCTCTCTC 57.394 47.826 0.00 0.00 0.00 3.20
614 629 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
615 630 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
616 631 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
617 632 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
618 633 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
629 644 1.603802 CTCTCTCTCTCTCATCGTGCC 59.396 57.143 0.00 0.00 0.00 5.01
710 1045 2.335712 GGGCGGGCTCACTTTCTTG 61.336 63.158 0.26 0.00 0.00 3.02
818 1155 1.150536 CTCTCCTCCCTCCTCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
990 1329 0.661780 CGGCGAACAGGAGATCGATC 60.662 60.000 17.91 17.91 41.92 3.69
1375 1720 3.066481 CGCTACCTACCTACCACTTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
1376 1721 4.021916 GCTACCTACCTACCACTTCTTCA 58.978 47.826 0.00 0.00 0.00 3.02
1624 2006 7.928873 TCTACCTACCTGGAAATTTCATTTCT 58.071 34.615 19.49 0.96 46.03 2.52
1627 2009 8.525290 ACCTACCTGGAAATTTCATTTCTATG 57.475 34.615 19.49 4.55 46.03 2.23
1632 2014 8.960591 ACCTGGAAATTTCATTTCTATGTACAG 58.039 33.333 19.49 11.72 46.03 2.74
1657 2039 9.271921 AGCATCCATGTCTGTATTATATTCCTA 57.728 33.333 0.00 0.00 0.00 2.94
1716 2098 2.704596 AGTGCTATCATCAGGTCATGCT 59.295 45.455 0.00 0.00 0.00 3.79
1720 2102 4.951715 TGCTATCATCAGGTCATGCTTTTT 59.048 37.500 0.00 0.00 0.00 1.94
1728 2110 4.280425 TCAGGTCATGCTTTTTGTGCAATA 59.720 37.500 0.00 0.00 44.01 1.90
1848 2236 3.059597 CACGTCGAAAATCTCAAAGCTGT 60.060 43.478 0.00 0.00 0.00 4.40
1958 2350 8.466798 ACATAAACAAACTTTATGATACCCTGC 58.533 33.333 16.18 0.00 42.15 4.85
1959 2351 6.909550 AAACAAACTTTATGATACCCTGCA 57.090 33.333 0.00 0.00 0.00 4.41
1960 2352 7.480760 AAACAAACTTTATGATACCCTGCAT 57.519 32.000 0.00 0.00 0.00 3.96
1961 2353 8.588290 AAACAAACTTTATGATACCCTGCATA 57.412 30.769 0.00 0.00 0.00 3.14
1962 2354 8.766994 AACAAACTTTATGATACCCTGCATAT 57.233 30.769 0.00 0.00 0.00 1.78
1963 2355 8.169977 ACAAACTTTATGATACCCTGCATATG 57.830 34.615 0.00 0.00 0.00 1.78
1964 2356 7.779798 ACAAACTTTATGATACCCTGCATATGT 59.220 33.333 4.29 0.00 0.00 2.29
1965 2357 9.283768 CAAACTTTATGATACCCTGCATATGTA 57.716 33.333 4.29 0.00 0.00 2.29
2000 2392 0.980231 AGGAGATGCAGGTGAGGGAC 60.980 60.000 0.00 0.00 0.00 4.46
2002 2394 0.177604 GAGATGCAGGTGAGGGACTG 59.822 60.000 0.00 0.00 41.55 3.51
2003 2395 1.222936 GATGCAGGTGAGGGACTGG 59.777 63.158 0.00 0.00 41.55 4.00
2004 2396 2.262774 GATGCAGGTGAGGGACTGGG 62.263 65.000 0.00 0.00 41.55 4.45
2051 2473 3.726144 GGAGAAGCCCAGCAGCCT 61.726 66.667 0.00 0.00 0.00 4.58
2072 2498 0.524414 GCCGACGCCCTAACAAATTT 59.476 50.000 0.00 0.00 0.00 1.82
2073 2499 1.731098 GCCGACGCCCTAACAAATTTG 60.731 52.381 16.67 16.67 0.00 2.32
2084 2510 6.813649 GCCCTAACAAATTTGAAATTCCTCTC 59.186 38.462 24.64 0.80 0.00 3.20
2086 2512 7.039082 CCCTAACAAATTTGAAATTCCTCTCCA 60.039 37.037 24.64 0.00 0.00 3.86
2093 2519 3.624777 TGAAATTCCTCTCCATTGAGCC 58.375 45.455 0.00 0.00 38.58 4.70
2094 2520 2.338577 AATTCCTCTCCATTGAGCCG 57.661 50.000 0.00 0.00 38.58 5.52
2096 2522 0.826715 TTCCTCTCCATTGAGCCGAG 59.173 55.000 0.00 0.00 38.58 4.63
2098 2524 0.179089 CCTCTCCATTGAGCCGAGTG 60.179 60.000 0.00 0.00 38.58 3.51
2099 2525 0.820226 CTCTCCATTGAGCCGAGTGA 59.180 55.000 0.00 0.00 38.58 3.41
2111 2539 4.870426 TGAGCCGAGTGATTTTTCAGATAC 59.130 41.667 0.00 0.00 0.00 2.24
2120 2548 6.660521 AGTGATTTTTCAGATACAGAATGGCA 59.339 34.615 0.00 0.00 43.62 4.92
2170 2598 8.109634 AGGTAAAGTTAACAAGATGGACATCAT 58.890 33.333 14.16 0.00 40.22 2.45
2176 2604 7.667219 AGTTAACAAGATGGACATCATTGAAGT 59.333 33.333 20.76 0.00 40.22 3.01
2199 2627 0.032017 ATGTTCGAGCCCTACTCCCT 60.032 55.000 0.00 0.00 43.01 4.20
2201 2629 1.320507 GTTCGAGCCCTACTCCCTAG 58.679 60.000 0.00 0.00 43.01 3.02
2222 2650 1.028868 GCTACCGAGTCACCCGTAGT 61.029 60.000 0.00 0.00 0.00 2.73
2249 2677 2.699321 GGTTCTACCCGCCTAATCTTCT 59.301 50.000 0.00 0.00 30.04 2.85
2252 2680 3.638860 TCTACCCGCCTAATCTTCTTCA 58.361 45.455 0.00 0.00 0.00 3.02
2257 2685 1.300481 GCCTAATCTTCTTCACCGCC 58.700 55.000 0.00 0.00 0.00 6.13
2276 2719 2.119655 CCTCCCCGTCTACCGTCAG 61.120 68.421 0.00 0.00 33.66 3.51
2278 2721 3.066190 CCCCGTCTACCGTCAGCA 61.066 66.667 0.00 0.00 33.66 4.41
2289 2732 2.108168 ACCGTCAGCAAGCCTCTTATA 58.892 47.619 0.00 0.00 0.00 0.98
2296 2739 4.410228 TCAGCAAGCCTCTTATACCTCATT 59.590 41.667 0.00 0.00 0.00 2.57
2332 2775 4.386761 CCTCCTCCATGAACCACCAATTAT 60.387 45.833 0.00 0.00 0.00 1.28
2336 2779 5.658190 CCTCCATGAACCACCAATTATCTTT 59.342 40.000 0.00 0.00 0.00 2.52
2346 2789 6.194967 CCACCAATTATCTTTTCCTAACCCT 58.805 40.000 0.00 0.00 0.00 4.34
2373 2816 7.715266 TCAGATGATCCATTCTAATCTCGAT 57.285 36.000 0.00 0.00 0.00 3.59
2374 2817 7.770201 TCAGATGATCCATTCTAATCTCGATC 58.230 38.462 0.00 0.00 0.00 3.69
2376 2819 5.316327 TGATCCATTCTAATCTCGATCGG 57.684 43.478 16.41 6.26 30.92 4.18
2377 2820 4.767409 TGATCCATTCTAATCTCGATCGGT 59.233 41.667 16.41 0.00 30.92 4.69
2378 2821 4.505313 TCCATTCTAATCTCGATCGGTG 57.495 45.455 16.41 8.93 0.00 4.94
2379 2822 3.889538 TCCATTCTAATCTCGATCGGTGT 59.110 43.478 16.41 1.02 0.00 4.16
2380 2823 4.341235 TCCATTCTAATCTCGATCGGTGTT 59.659 41.667 16.41 9.79 0.00 3.32
2381 2824 4.681942 CCATTCTAATCTCGATCGGTGTTC 59.318 45.833 16.41 0.00 0.00 3.18
2396 2839 2.234414 GGTGTTCATACCCGTCCAACTA 59.766 50.000 0.00 0.00 34.56 2.24
2426 2869 2.357517 GGTGGTGCCAGTCTCACG 60.358 66.667 0.00 0.00 37.17 4.35
2443 2886 2.908796 GTCAAGATCCCCCGTCCC 59.091 66.667 0.00 0.00 0.00 4.46
2458 2901 1.229853 TCCCACTTCTTCCTCCCCC 60.230 63.158 0.00 0.00 0.00 5.40
2470 2913 2.016096 TCCTCCCCCTTCTTTCTCCTA 58.984 52.381 0.00 0.00 0.00 2.94
2474 2917 4.140663 CCTCCCCCTTCTTTCTCCTATCTA 60.141 50.000 0.00 0.00 0.00 1.98
2482 2925 7.728083 CCCTTCTTTCTCCTATCTAGAGAATCA 59.272 40.741 0.00 0.00 46.77 2.57
2487 2930 8.472007 TTTCTCCTATCTAGAGAATCACTTCC 57.528 38.462 0.00 0.00 46.77 3.46
2502 2945 1.152271 ACTTCCTCCTCCTCCTTCCAA 59.848 52.381 0.00 0.00 0.00 3.53
2503 2946 1.836802 CTTCCTCCTCCTCCTTCCAAG 59.163 57.143 0.00 0.00 0.00 3.61
2507 2950 0.475632 TCCTCCTCCTTCCAAGCCAA 60.476 55.000 0.00 0.00 0.00 4.52
2508 2951 0.322906 CCTCCTCCTTCCAAGCCAAC 60.323 60.000 0.00 0.00 0.00 3.77
2509 2952 0.401738 CTCCTCCTTCCAAGCCAACA 59.598 55.000 0.00 0.00 0.00 3.33
2510 2953 0.401738 TCCTCCTTCCAAGCCAACAG 59.598 55.000 0.00 0.00 0.00 3.16
2511 2954 0.111253 CCTCCTTCCAAGCCAACAGT 59.889 55.000 0.00 0.00 0.00 3.55
2512 2955 1.242076 CTCCTTCCAAGCCAACAGTG 58.758 55.000 0.00 0.00 0.00 3.66
2513 2956 0.843309 TCCTTCCAAGCCAACAGTGA 59.157 50.000 0.00 0.00 0.00 3.41
2514 2957 1.202806 TCCTTCCAAGCCAACAGTGAG 60.203 52.381 0.00 0.00 0.00 3.51
2524 2967 4.029520 AGCCAACAGTGAGTCTCTATGAT 58.970 43.478 0.00 0.00 0.00 2.45
2544 2987 3.517296 TCAGGGAGCAAAATTACACCA 57.483 42.857 0.00 0.00 0.00 4.17
2549 2992 6.152661 TCAGGGAGCAAAATTACACCAAATAG 59.847 38.462 0.00 0.00 0.00 1.73
2550 2993 6.152661 CAGGGAGCAAAATTACACCAAATAGA 59.847 38.462 0.00 0.00 0.00 1.98
2578 3021 7.758820 TTTATAAGAGGATAACCAAGGGTCA 57.241 36.000 0.00 0.00 33.12 4.02
2579 3022 7.947782 TTATAAGAGGATAACCAAGGGTCAT 57.052 36.000 0.00 0.00 33.12 3.06
2580 3023 4.510167 AAGAGGATAACCAAGGGTCATG 57.490 45.455 0.00 0.00 33.12 3.07
2591 3035 2.505407 CAAGGGTCATGGTATCTGTGGA 59.495 50.000 0.00 0.00 0.00 4.02
2603 3047 9.605275 CATGGTATCTGTGGATAATATTGGTAG 57.395 37.037 0.00 0.00 36.35 3.18
2697 3141 6.347696 ACAATGTGAAATTTTCTCTTGGCAA 58.652 32.000 10.33 0.00 0.00 4.52
2703 3147 1.604604 TTTTCTCTTGGCAACCCTCG 58.395 50.000 0.00 0.00 0.00 4.63
2708 3152 1.377725 CTTGGCAACCCTCGCTCAT 60.378 57.895 0.00 0.00 0.00 2.90
2717 3161 2.484928 CCTCGCTCATGCTCCTCGA 61.485 63.158 0.00 0.00 36.97 4.04
2745 3189 6.775629 GGTAAGAAGGGGCAATATTGTTCATA 59.224 38.462 16.61 7.20 0.00 2.15
2747 3191 7.530426 AAGAAGGGGCAATATTGTTCATATC 57.470 36.000 16.61 8.68 0.00 1.63
2748 3192 6.613699 AGAAGGGGCAATATTGTTCATATCA 58.386 36.000 16.61 0.00 0.00 2.15
2753 3197 9.378504 AGGGGCAATATTGTTCATATCATTTAA 57.621 29.630 16.61 0.00 0.00 1.52
2773 3217 7.696992 TTTAAACATAATCCCAAGTGAGGTC 57.303 36.000 0.00 0.00 0.00 3.85
2833 3278 8.395633 CGAAATAACCGGTTTCTTGAAATATCT 58.604 33.333 27.64 0.00 34.28 1.98
2864 3309 7.466746 TTCAGGGGAAAAACAGATATCTTTG 57.533 36.000 1.33 0.00 0.00 2.77
2927 3374 5.828299 TGTTGAATTCGAGGAAAGTTTGT 57.172 34.783 0.04 0.00 0.00 2.83
2935 3382 3.064271 TCGAGGAAAGTTTGTCAAAACCG 59.936 43.478 0.00 0.00 45.75 4.44
2962 3414 5.722021 TTCTGGCTGGTATTTTTCTTTCC 57.278 39.130 0.00 0.00 0.00 3.13
3023 3476 3.019564 GGAATGGAAACCCTGATCACAG 58.980 50.000 0.00 0.00 43.12 3.66
3166 3627 5.071653 ACACCCAAATTTAAGCAAGGTGAAT 59.928 36.000 18.61 3.56 44.85 2.57
3181 3642 6.092122 GCAAGGTGAATTTAAAAACTATGGGC 59.908 38.462 0.00 0.00 0.00 5.36
3182 3643 6.926630 AGGTGAATTTAAAAACTATGGGCA 57.073 33.333 0.00 0.00 0.00 5.36
3207 3668 3.306502 GGAAATGTACGTTCACTCTCCCA 60.307 47.826 0.00 0.00 0.00 4.37
3208 3669 3.314541 AATGTACGTTCACTCTCCCAC 57.685 47.619 0.00 0.00 0.00 4.61
3209 3670 0.594602 TGTACGTTCACTCTCCCACG 59.405 55.000 0.00 0.00 38.62 4.94
3210 3671 0.109412 GTACGTTCACTCTCCCACGG 60.109 60.000 0.00 0.00 36.95 4.94
3211 3672 0.538057 TACGTTCACTCTCCCACGGT 60.538 55.000 0.00 0.00 36.95 4.83
3212 3673 1.080705 CGTTCACTCTCCCACGGTC 60.081 63.158 0.00 0.00 0.00 4.79
3213 3674 1.292541 GTTCACTCTCCCACGGTCC 59.707 63.158 0.00 0.00 0.00 4.46
3214 3675 1.911766 TTCACTCTCCCACGGTCCC 60.912 63.158 0.00 0.00 0.00 4.46
3221 3682 4.653888 CCCACGGTCCCACCCAAC 62.654 72.222 0.00 0.00 33.75 3.77
3232 3693 0.109342 CCACCCAACTGAGCTCAACT 59.891 55.000 18.85 4.52 0.00 3.16
3243 3704 7.256119 CCAACTGAGCTCAACTATATACTCCAT 60.256 40.741 18.85 0.00 0.00 3.41
3260 3721 1.327460 CCATATTTGCACCGTGTCTCG 59.673 52.381 0.00 0.00 39.52 4.04
3261 3722 2.267426 CATATTTGCACCGTGTCTCGA 58.733 47.619 0.00 0.00 42.86 4.04
3262 3723 2.665649 TATTTGCACCGTGTCTCGAT 57.334 45.000 0.00 0.00 42.86 3.59
3263 3724 1.808411 ATTTGCACCGTGTCTCGATT 58.192 45.000 0.00 0.00 42.86 3.34
3321 3782 7.990917 TGAGCAAACACAAAACTGAAGTAATA 58.009 30.769 0.00 0.00 0.00 0.98
3380 3841 4.956700 TCTTGTCTAACTAGCTGCCTATGT 59.043 41.667 0.00 0.00 0.00 2.29
3384 3845 5.046591 TGTCTAACTAGCTGCCTATGTGTTT 60.047 40.000 0.00 0.00 0.00 2.83
3451 3914 3.523157 ACATGACATGACCATACCCTTCA 59.477 43.478 22.19 0.00 0.00 3.02
3516 3992 3.561310 CACTAGCTCTTTTGACAAGTGCA 59.439 43.478 7.94 0.00 38.73 4.57
3582 4058 1.060937 GCGCTGAAATGGCTGTACG 59.939 57.895 0.00 0.00 0.00 3.67
3646 4122 8.610035 GTTTGACAAAGTTTTGCTAGTACTACT 58.390 33.333 0.00 0.00 41.79 2.57
3647 4123 9.820725 TTTGACAAAGTTTTGCTAGTACTACTA 57.179 29.630 0.00 0.00 41.79 1.82
3648 4124 8.807667 TGACAAAGTTTTGCTAGTACTACTAC 57.192 34.615 0.00 0.00 41.79 2.73
3649 4125 7.869429 TGACAAAGTTTTGCTAGTACTACTACC 59.131 37.037 0.00 0.00 41.79 3.18
3650 4126 7.960262 ACAAAGTTTTGCTAGTACTACTACCT 58.040 34.615 0.00 0.00 41.79 3.08
3696 4172 4.342092 GCTCAGGTTTTGCCACCATATATT 59.658 41.667 0.09 0.00 39.62 1.28
3697 4173 5.534654 GCTCAGGTTTTGCCACCATATATTA 59.465 40.000 0.09 0.00 39.62 0.98
3725 4201 2.478831 GGCTCTATCTTGCTTCTTCCG 58.521 52.381 0.00 0.00 0.00 4.30
3819 4299 7.918562 GTCTCTACTCCACTTGATTAATCTGTC 59.081 40.741 16.24 0.00 0.00 3.51
3835 4319 8.515695 TTAATCTGTCGATGAGTAGTTTCCTA 57.484 34.615 0.00 0.00 0.00 2.94
3842 4326 4.517453 CGATGAGTAGTTTCCTAGCTAGCT 59.483 45.833 23.12 23.12 0.00 3.32
3843 4327 5.701750 CGATGAGTAGTTTCCTAGCTAGCTA 59.298 44.000 22.85 22.85 0.00 3.32
3844 4328 6.128391 CGATGAGTAGTTTCCTAGCTAGCTAG 60.128 46.154 35.39 35.39 44.07 3.42
4100 4584 6.876257 CCCCTTAATTAGCTATAGTTGCTCAG 59.124 42.308 0.84 0.00 41.46 3.35
4423 4908 9.185192 CTCAAAATTGAACTCAAACAGGTATTC 57.815 33.333 0.00 0.00 39.55 1.75
4428 4924 6.558771 TGAACTCAAACAGGTATTCATGTG 57.441 37.500 0.00 0.00 38.61 3.21
4436 4932 6.743575 AACAGGTATTCATGTGCTAGAAAC 57.256 37.500 0.00 0.00 38.61 2.78
4447 4943 4.199310 TGTGCTAGAAACTGAGTTTGCTT 58.801 39.130 16.25 3.65 35.77 3.91
4449 4945 4.513318 GTGCTAGAAACTGAGTTTGCTTCT 59.487 41.667 16.25 8.80 35.77 2.85
4450 4946 5.008118 GTGCTAGAAACTGAGTTTGCTTCTT 59.992 40.000 16.25 0.00 35.77 2.52
4451 4947 5.237344 TGCTAGAAACTGAGTTTGCTTCTTC 59.763 40.000 16.25 0.00 35.77 2.87
4452 4948 5.468409 GCTAGAAACTGAGTTTGCTTCTTCT 59.532 40.000 16.25 6.97 35.77 2.85
4453 4949 6.017523 GCTAGAAACTGAGTTTGCTTCTTCTT 60.018 38.462 16.25 0.00 35.77 2.52
4454 4950 6.370433 AGAAACTGAGTTTGCTTCTTCTTC 57.630 37.500 16.25 0.00 35.77 2.87
4455 4951 6.118852 AGAAACTGAGTTTGCTTCTTCTTCT 58.881 36.000 16.25 0.00 35.77 2.85
4456 4952 6.601217 AGAAACTGAGTTTGCTTCTTCTTCTT 59.399 34.615 16.25 0.00 35.77 2.52
4457 4953 6.765915 AACTGAGTTTGCTTCTTCTTCTTT 57.234 33.333 0.00 0.00 0.00 2.52
4458 4954 6.765915 ACTGAGTTTGCTTCTTCTTCTTTT 57.234 33.333 0.00 0.00 0.00 2.27
4459 4955 7.163001 ACTGAGTTTGCTTCTTCTTCTTTTT 57.837 32.000 0.00 0.00 0.00 1.94
4488 4984 7.316687 GTGAAACTTAGTTTGCCGTAAAATC 57.683 36.000 15.57 0.00 35.77 2.17
4491 4987 8.500773 TGAAACTTAGTTTGCCGTAAAATCTAG 58.499 33.333 15.57 0.00 35.77 2.43
4495 4991 5.485662 AGTTTGCCGTAAAATCTAGATGC 57.514 39.130 5.86 4.78 0.00 3.91
4510 5006 5.716979 TCTAGATGCTATTACCACCTTCCT 58.283 41.667 0.00 0.00 0.00 3.36
4517 5013 9.740710 GATGCTATTACCACCTTCCTAAAATAT 57.259 33.333 0.00 0.00 0.00 1.28
4544 5123 9.698309 ATCAAGTATGTGCTAGTACAATACATC 57.302 33.333 17.90 5.32 34.22 3.06
4603 5182 7.579589 TGTGCAAAATTATTTGGATTTCTCG 57.420 32.000 0.00 0.00 46.53 4.04
4612 5191 8.792830 ATTATTTGGATTTCTCGAGTGAAGAA 57.207 30.769 13.13 0.00 0.00 2.52
4616 5196 6.486253 TGGATTTCTCGAGTGAAGAATTTG 57.514 37.500 13.13 0.00 0.00 2.32
4620 5200 7.862873 GGATTTCTCGAGTGAAGAATTTGTTTT 59.137 33.333 13.13 0.00 0.00 2.43
4635 5215 9.539194 AGAATTTGTTTTCTCAAGGGAAGATAT 57.461 29.630 0.00 0.00 29.99 1.63
4750 5330 4.136796 TGAACTGGAGACCATGTCAAAAG 58.863 43.478 0.00 0.00 34.60 2.27
4754 5334 3.674997 TGGAGACCATGTCAAAAGCTAC 58.325 45.455 0.00 0.00 34.60 3.58
4760 5340 6.653020 AGACCATGTCAAAAGCTACATCATA 58.347 36.000 0.00 0.00 34.12 2.15
4761 5341 7.112122 AGACCATGTCAAAAGCTACATCATAA 58.888 34.615 0.00 0.00 34.12 1.90
4792 5379 2.097825 GAGTGCCATGGAAGCTTGATT 58.902 47.619 18.40 0.00 0.00 2.57
4793 5380 1.822990 AGTGCCATGGAAGCTTGATTG 59.177 47.619 18.40 0.00 0.00 2.67
4806 5393 7.611467 TGGAAGCTTGATTGTATCAGTGTTAAT 59.389 33.333 2.10 0.00 40.94 1.40
4810 5397 9.236006 AGCTTGATTGTATCAGTGTTAATTTCT 57.764 29.630 0.00 0.00 40.94 2.52
4974 5562 2.100749 TGAGTGCACCGTACCTATCATG 59.899 50.000 14.63 0.00 0.00 3.07
4975 5563 1.202533 AGTGCACCGTACCTATCATGC 60.203 52.381 14.63 0.00 0.00 4.06
4976 5564 0.827368 TGCACCGTACCTATCATGCA 59.173 50.000 0.00 0.00 40.57 3.96
4977 5565 1.416030 TGCACCGTACCTATCATGCAT 59.584 47.619 0.00 0.00 38.11 3.96
5018 5614 2.881539 TAGCCATCCACTGCTGCTGC 62.882 60.000 8.89 8.89 38.52 5.25
5019 5615 2.045242 CCATCCACTGCTGCTGCT 60.045 61.111 17.00 0.00 40.48 4.24
5020 5616 2.407428 CCATCCACTGCTGCTGCTG 61.407 63.158 18.66 18.66 42.70 4.41
5021 5617 2.750637 ATCCACTGCTGCTGCTGC 60.751 61.111 22.51 22.51 41.07 5.25
5022 5618 3.269521 ATCCACTGCTGCTGCTGCT 62.270 57.895 27.67 9.87 41.07 4.24
5023 5619 3.738246 CCACTGCTGCTGCTGCTG 61.738 66.667 27.75 27.75 41.07 4.41
5032 5628 2.125065 CTGCTGCTGCTGCTAGCT 60.125 61.111 27.67 0.00 42.97 3.32
5033 5629 1.143401 CTGCTGCTGCTGCTAGCTA 59.857 57.895 27.67 17.98 42.97 3.32
5034 5630 0.876777 CTGCTGCTGCTGCTAGCTAG 60.877 60.000 27.67 16.84 42.97 3.42
5058 5654 1.134907 GCTAAGCAGTTGCCATGCATT 60.135 47.619 0.00 2.62 46.31 3.56
5076 5672 3.127721 GCATTCTTAGCTGTTCTCCAACC 59.872 47.826 0.00 0.00 0.00 3.77
5077 5673 3.418684 TTCTTAGCTGTTCTCCAACCC 57.581 47.619 0.00 0.00 0.00 4.11
5120 5721 3.144506 ACTTGTTCCATCAGACAGCTTG 58.855 45.455 0.00 0.00 0.00 4.01
5121 5722 1.527034 TGTTCCATCAGACAGCTTGC 58.473 50.000 0.00 0.00 0.00 4.01
5122 5723 1.202794 TGTTCCATCAGACAGCTTGCA 60.203 47.619 0.00 0.00 0.00 4.08
5123 5724 2.089980 GTTCCATCAGACAGCTTGCAT 58.910 47.619 0.00 0.00 0.00 3.96
5124 5725 2.490903 GTTCCATCAGACAGCTTGCATT 59.509 45.455 0.00 0.00 0.00 3.56
5220 5826 6.587226 TCTCAATTGCATGATGTTTACTTTGC 59.413 34.615 0.00 0.00 0.00 3.68
5225 5831 4.448395 TGCATGATGTTTACTTTGCTTTGC 59.552 37.500 0.00 0.00 0.00 3.68
5321 5932 1.936547 GAAGACGATAAGGCCAAGCTG 59.063 52.381 5.01 0.00 0.00 4.24
5451 6062 5.587043 CGTAAAAGGTGAGCCAACCAATATA 59.413 40.000 8.06 0.00 43.20 0.86
5452 6063 6.262273 CGTAAAAGGTGAGCCAACCAATATAT 59.738 38.462 8.06 0.00 43.20 0.86
5453 6064 7.442969 CGTAAAAGGTGAGCCAACCAATATATA 59.557 37.037 8.06 0.00 43.20 0.86
5454 6065 9.297037 GTAAAAGGTGAGCCAACCAATATATAT 57.703 33.333 8.06 0.00 43.20 0.86
5455 6066 8.409358 AAAAGGTGAGCCAACCAATATATATC 57.591 34.615 8.06 0.00 43.20 1.63
5456 6067 6.702449 AGGTGAGCCAACCAATATATATCA 57.298 37.500 8.06 0.00 43.20 2.15
5458 6069 5.648092 GGTGAGCCAACCAATATATATCACC 59.352 44.000 9.47 9.47 45.09 4.02
5462 6080 7.037370 TGAGCCAACCAATATATATCACCATCT 60.037 37.037 0.00 0.00 0.00 2.90
5464 6082 8.835734 AGCCAACCAATATATATCACCATCTAA 58.164 33.333 0.00 0.00 0.00 2.10
5476 6094 3.863424 TCACCATCTAAATTCGTTCGCTC 59.137 43.478 0.00 0.00 0.00 5.03
5529 6148 1.269257 TGATCCATCAGTTAGAGCGCG 60.269 52.381 0.00 0.00 32.11 6.86
5531 6150 0.382158 TCCATCAGTTAGAGCGCGAG 59.618 55.000 12.10 0.00 0.00 5.03
5610 6229 3.055167 TGATGTGTATGTGCAGGTAGCTT 60.055 43.478 0.00 0.00 45.94 3.74
5611 6230 4.161377 TGATGTGTATGTGCAGGTAGCTTA 59.839 41.667 0.00 0.00 45.94 3.09
5612 6231 4.123497 TGTGTATGTGCAGGTAGCTTAG 57.877 45.455 0.00 0.00 45.94 2.18
5613 6232 3.118775 TGTGTATGTGCAGGTAGCTTAGG 60.119 47.826 0.00 0.00 45.94 2.69
5614 6233 3.104512 TGTATGTGCAGGTAGCTTAGGT 58.895 45.455 0.00 0.00 45.94 3.08
5615 6234 2.698855 ATGTGCAGGTAGCTTAGGTG 57.301 50.000 0.00 0.00 45.94 4.00
5616 6235 0.613260 TGTGCAGGTAGCTTAGGTGG 59.387 55.000 0.00 0.00 45.94 4.61
5617 6236 0.107654 GTGCAGGTAGCTTAGGTGGG 60.108 60.000 0.00 0.00 45.94 4.61
5620 6239 0.466124 CAGGTAGCTTAGGTGGGAGC 59.534 60.000 0.00 0.00 39.17 4.70
5625 6244 1.002134 GCTTAGGTGGGAGCTGCAA 60.002 57.895 7.79 0.00 36.01 4.08
5627 6246 1.909700 CTTAGGTGGGAGCTGCAAAA 58.090 50.000 7.79 0.00 0.00 2.44
5628 6247 1.815003 CTTAGGTGGGAGCTGCAAAAG 59.185 52.381 7.79 0.00 0.00 2.27
5653 6272 9.942850 AGTGCAAAGTATATACATGCATATACA 57.057 29.630 31.66 16.44 45.86 2.29
5817 6438 1.511887 CTGGCATACGCGTTGCAAC 60.512 57.895 31.98 19.89 41.95 4.17
5833 6455 4.690184 TGCAACTGTTGAGCTGATATTG 57.310 40.909 23.81 0.00 0.00 1.90
5887 6516 4.274602 TGTTGTGGGTGAACGTACATAT 57.725 40.909 0.00 0.00 0.00 1.78
5890 6519 4.274602 TGTGGGTGAACGTACATATGTT 57.725 40.909 14.77 0.00 38.08 2.71
5897 6526 6.311723 GGTGAACGTACATATGTTTCCAAAG 58.688 40.000 14.77 0.21 35.69 2.77
5916 6545 6.040054 TCCAAAGATTCATTCCTGTGCATATG 59.960 38.462 0.00 0.00 0.00 1.78
5918 6547 7.013559 CCAAAGATTCATTCCTGTGCATATGTA 59.986 37.037 4.29 0.00 0.00 2.29
5920 6549 7.683437 AGATTCATTCCTGTGCATATGTATG 57.317 36.000 4.29 0.00 36.78 2.39
5930 6559 9.822185 TCCTGTGCATATGTATGTATATTGATC 57.178 33.333 4.29 0.00 36.11 2.92
5931 6560 9.603921 CCTGTGCATATGTATGTATATTGATCA 57.396 33.333 4.29 0.00 36.11 2.92
5956 6585 2.104530 GCCTTCTACGGCGTCTCC 59.895 66.667 19.21 0.00 40.79 3.71
5972 6601 4.787598 CGTCTCCAATGACCAAAGAAAAG 58.212 43.478 0.00 0.00 33.70 2.27
6008 6637 6.978080 CCTCTGCTTTTATCAAGTCTCTCTAC 59.022 42.308 0.00 0.00 0.00 2.59
6018 6647 4.095036 TCAAGTCTCTCTACGTATGTGCTG 59.905 45.833 0.00 0.00 0.00 4.41
6019 6648 3.611970 AGTCTCTCTACGTATGTGCTGT 58.388 45.455 0.00 0.00 0.00 4.40
6020 6649 3.623960 AGTCTCTCTACGTATGTGCTGTC 59.376 47.826 0.00 0.00 0.00 3.51
6108 6742 2.288013 CGTACGCGTCTTGATGCAT 58.712 52.632 18.63 0.00 0.00 3.96
6140 6774 0.250901 CTAGTGCTGTGTGGGCCTTT 60.251 55.000 4.53 0.00 0.00 3.11
6274 6950 7.668469 ACATATATGTTGTGCATCCTCATCATT 59.332 33.333 12.75 0.00 37.90 2.57
6310 6986 4.840772 GCGCAGATTATAGTTATGCAAACG 59.159 41.667 0.30 0.00 36.70 3.60
6348 7024 0.470645 AGAGCCAAAAGCCAAAGCCT 60.471 50.000 0.00 0.00 45.47 4.58
6557 7233 1.798223 CGGAATGCGAAGAGTTCACAA 59.202 47.619 0.00 0.00 0.00 3.33
6585 7261 2.834549 CACCCAGAGGAACTACAGATGT 59.165 50.000 0.00 0.00 41.55 3.06
6601 7277 5.114780 ACAGATGTGATGCAGTTCATAGTC 58.885 41.667 0.00 0.00 35.05 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.073440 GGAGTAAACACTGATGACGCTTTTAA 60.073 38.462 0.00 0.00 0.00 1.52
1 2 5.407387 GGAGTAAACACTGATGACGCTTTTA 59.593 40.000 0.00 0.00 0.00 1.52
2 3 4.213482 GGAGTAAACACTGATGACGCTTTT 59.787 41.667 0.00 0.00 0.00 2.27
97 100 6.364945 ACAGCTTAACTTTGACTTTGAGAC 57.635 37.500 0.00 0.00 0.00 3.36
176 179 6.537301 TGCAGTAAAAATATCTAACCACCGAG 59.463 38.462 0.00 0.00 0.00 4.63
177 180 6.408035 TGCAGTAAAAATATCTAACCACCGA 58.592 36.000 0.00 0.00 0.00 4.69
178 181 6.671614 TGCAGTAAAAATATCTAACCACCG 57.328 37.500 0.00 0.00 0.00 4.94
186 189 9.618890 TCTAGAAAGCATGCAGTAAAAATATCT 57.381 29.630 21.98 7.48 0.00 1.98
189 192 8.175069 CGTTCTAGAAAGCATGCAGTAAAAATA 58.825 33.333 21.98 0.78 0.00 1.40
423 428 3.777556 CTTGTGTTCCAAGGGGGC 58.222 61.111 0.00 0.00 45.70 5.80
453 458 2.622942 CGCCTACCAAATTGCACCATAT 59.377 45.455 0.00 0.00 0.00 1.78
454 459 2.020720 CGCCTACCAAATTGCACCATA 58.979 47.619 0.00 0.00 0.00 2.74
474 479 4.526650 TGAGGGTTTGGAATAAAGAAAGGC 59.473 41.667 0.00 0.00 0.00 4.35
551 560 0.253677 AGGAGGGTAGGGGAAAAGGG 60.254 60.000 0.00 0.00 0.00 3.95
609 624 1.603802 GGCACGATGAGAGAGAGAGAG 59.396 57.143 0.00 0.00 0.00 3.20
610 625 1.065126 TGGCACGATGAGAGAGAGAGA 60.065 52.381 0.00 0.00 0.00 3.10
611 626 1.387539 TGGCACGATGAGAGAGAGAG 58.612 55.000 0.00 0.00 0.00 3.20
612 627 2.064434 ATGGCACGATGAGAGAGAGA 57.936 50.000 0.00 0.00 0.00 3.10
613 628 3.998099 TTATGGCACGATGAGAGAGAG 57.002 47.619 0.00 0.00 0.00 3.20
614 629 5.316987 TCTATTATGGCACGATGAGAGAGA 58.683 41.667 0.00 0.00 0.00 3.10
615 630 5.182950 ACTCTATTATGGCACGATGAGAGAG 59.817 44.000 17.26 10.44 34.86 3.20
616 631 5.073428 ACTCTATTATGGCACGATGAGAGA 58.927 41.667 17.26 0.36 34.58 3.10
617 632 5.384063 ACTCTATTATGGCACGATGAGAG 57.616 43.478 11.55 11.55 36.18 3.20
618 633 8.575649 TTATACTCTATTATGGCACGATGAGA 57.424 34.615 11.46 1.87 0.00 3.27
884 1222 1.000060 TGGCGTCGGGTATGTATAAGC 60.000 52.381 0.00 0.00 0.00 3.09
885 1223 2.608752 GGTGGCGTCGGGTATGTATAAG 60.609 54.545 0.00 0.00 0.00 1.73
886 1224 1.340889 GGTGGCGTCGGGTATGTATAA 59.659 52.381 0.00 0.00 0.00 0.98
990 1329 4.303603 CCTTGCATGCGCCGATCG 62.304 66.667 14.09 8.51 42.12 3.69
1375 1720 3.333189 CGACGCGATCCATGGCTG 61.333 66.667 15.93 0.00 0.00 4.85
1376 1721 3.838271 ACGACGCGATCCATGGCT 61.838 61.111 15.93 0.00 0.00 4.75
1624 2006 6.670695 ATACAGACATGGATGCTGTACATA 57.329 37.500 18.14 6.52 43.31 2.29
1627 2009 9.658799 AATATAATACAGACATGGATGCTGTAC 57.341 33.333 18.14 0.00 43.31 2.90
1657 2039 6.451064 AAAGTGAAACAGAAACGGAAAGAT 57.549 33.333 0.00 0.00 41.43 2.40
1720 2102 7.822161 AGCAAAGGATGTATAATATTGCACA 57.178 32.000 9.83 2.46 42.95 4.57
1736 2118 7.817418 AATTCACTAACTAACAAGCAAAGGA 57.183 32.000 0.00 0.00 0.00 3.36
1767 2149 5.760253 ACCTTTGAGACATGACAACAACTAG 59.240 40.000 0.00 0.00 0.00 2.57
1848 2236 6.884836 GGAAGTCTTAGAAGGAAAGGCATAAA 59.115 38.462 0.00 0.00 30.83 1.40
1932 2324 8.466798 GCAGGGTATCATAAAGTTTGTTTATGT 58.533 33.333 14.21 7.26 41.03 2.29
1933 2325 8.465999 TGCAGGGTATCATAAAGTTTGTTTATG 58.534 33.333 10.09 10.09 41.38 1.90
1934 2326 8.588290 TGCAGGGTATCATAAAGTTTGTTTAT 57.412 30.769 0.00 0.00 0.00 1.40
1935 2327 8.588290 ATGCAGGGTATCATAAAGTTTGTTTA 57.412 30.769 0.00 0.00 0.00 2.01
1936 2328 6.909550 TGCAGGGTATCATAAAGTTTGTTT 57.090 33.333 0.00 0.00 0.00 2.83
1937 2329 8.632679 CATATGCAGGGTATCATAAAGTTTGTT 58.367 33.333 0.00 0.00 0.00 2.83
1938 2330 7.779798 ACATATGCAGGGTATCATAAAGTTTGT 59.220 33.333 1.58 0.00 0.00 2.83
1939 2331 8.169977 ACATATGCAGGGTATCATAAAGTTTG 57.830 34.615 1.58 0.00 0.00 2.93
1946 2338 9.660544 AGTGATATACATATGCAGGGTATCATA 57.339 33.333 1.58 0.00 31.96 2.15
1947 2339 8.558713 AGTGATATACATATGCAGGGTATCAT 57.441 34.615 1.58 4.82 31.96 2.45
1948 2340 7.978099 AGTGATATACATATGCAGGGTATCA 57.022 36.000 1.58 7.19 0.00 2.15
1949 2341 9.920133 CATAGTGATATACATATGCAGGGTATC 57.080 37.037 1.58 4.90 0.00 2.24
1950 2342 9.660544 TCATAGTGATATACATATGCAGGGTAT 57.339 33.333 1.58 11.10 0.00 2.73
1951 2343 9.487442 TTCATAGTGATATACATATGCAGGGTA 57.513 33.333 1.58 0.00 0.00 3.69
1952 2344 7.978099 TCATAGTGATATACATATGCAGGGT 57.022 36.000 1.58 0.00 0.00 4.34
1953 2345 9.842775 ATTTCATAGTGATATACATATGCAGGG 57.157 33.333 1.58 0.00 0.00 4.45
1965 2357 9.887629 CTGCATCTCCTTATTTCATAGTGATAT 57.112 33.333 0.00 0.00 0.00 1.63
1984 2376 1.270414 CCAGTCCCTCACCTGCATCT 61.270 60.000 0.00 0.00 0.00 2.90
1985 2377 1.222936 CCAGTCCCTCACCTGCATC 59.777 63.158 0.00 0.00 0.00 3.91
1986 2378 2.304056 CCCAGTCCCTCACCTGCAT 61.304 63.158 0.00 0.00 0.00 3.96
2004 2396 1.547372 TCCGTCTTACTAGGGTGCAAC 59.453 52.381 0.00 0.00 0.00 4.17
2057 2479 5.011635 AGGAATTTCAAATTTGTTAGGGCGT 59.988 36.000 17.47 4.17 0.00 5.68
2058 2480 5.478407 AGGAATTTCAAATTTGTTAGGGCG 58.522 37.500 17.47 0.00 0.00 6.13
2059 2481 6.701340 AGAGGAATTTCAAATTTGTTAGGGC 58.299 36.000 17.47 4.96 0.00 5.19
2072 2498 3.624777 GGCTCAATGGAGAGGAATTTCA 58.375 45.455 0.00 0.00 44.26 2.69
2073 2499 2.615912 CGGCTCAATGGAGAGGAATTTC 59.384 50.000 0.00 0.00 44.26 2.17
2084 2510 3.191162 TGAAAAATCACTCGGCTCAATGG 59.809 43.478 0.00 0.00 0.00 3.16
2086 2512 4.326826 TCTGAAAAATCACTCGGCTCAAT 58.673 39.130 0.00 0.00 0.00 2.57
2093 2519 7.404985 CCATTCTGTATCTGAAAAATCACTCG 58.595 38.462 0.00 0.00 0.00 4.18
2094 2520 7.148188 TGCCATTCTGTATCTGAAAAATCACTC 60.148 37.037 0.00 0.00 0.00 3.51
2096 2522 6.749118 GTGCCATTCTGTATCTGAAAAATCAC 59.251 38.462 0.00 0.00 0.00 3.06
2098 2524 6.855836 TGTGCCATTCTGTATCTGAAAAATC 58.144 36.000 0.00 0.00 0.00 2.17
2099 2525 6.839124 TGTGCCATTCTGTATCTGAAAAAT 57.161 33.333 0.00 0.00 0.00 1.82
2132 2560 6.821665 TGTTAACTTTACCTAGCATGCCTAAG 59.178 38.462 15.66 9.68 0.00 2.18
2170 2598 3.197766 AGGGCTCGAACATCATACTTCAA 59.802 43.478 0.00 0.00 0.00 2.69
2176 2604 2.891580 GGAGTAGGGCTCGAACATCATA 59.108 50.000 0.00 0.00 45.03 2.15
2199 2627 0.463295 CGGGTGACTCGGTAGCTCTA 60.463 60.000 0.00 0.00 0.00 2.43
2201 2629 0.745845 TACGGGTGACTCGGTAGCTC 60.746 60.000 10.58 0.00 0.00 4.09
2231 2659 3.383825 GTGAAGAAGATTAGGCGGGTAGA 59.616 47.826 0.00 0.00 0.00 2.59
2272 2713 3.133003 TGAGGTATAAGAGGCTTGCTGAC 59.867 47.826 0.00 0.00 0.00 3.51
2276 2719 4.276926 CCAAATGAGGTATAAGAGGCTTGC 59.723 45.833 0.00 0.00 0.00 4.01
2278 2721 4.464947 GCCAAATGAGGTATAAGAGGCTT 58.535 43.478 0.00 0.00 36.72 4.35
2289 2732 4.623863 AGGATTTAATGGCCAAATGAGGT 58.376 39.130 10.96 0.00 0.00 3.85
2296 2739 2.584965 TGGAGGAGGATTTAATGGCCAA 59.415 45.455 10.96 0.00 0.00 4.52
2332 2775 5.726308 TCATCTGATCAGGGTTAGGAAAAGA 59.274 40.000 22.42 0.00 0.00 2.52
2376 2819 2.467566 AGTTGGACGGGTATGAACAC 57.532 50.000 0.00 0.00 0.00 3.32
2377 2820 2.234414 GGTAGTTGGACGGGTATGAACA 59.766 50.000 0.00 0.00 0.00 3.18
2378 2821 2.736400 CGGTAGTTGGACGGGTATGAAC 60.736 54.545 0.00 0.00 0.00 3.18
2379 2822 1.477700 CGGTAGTTGGACGGGTATGAA 59.522 52.381 0.00 0.00 0.00 2.57
2380 2823 1.105457 CGGTAGTTGGACGGGTATGA 58.895 55.000 0.00 0.00 0.00 2.15
2381 2824 1.105457 TCGGTAGTTGGACGGGTATG 58.895 55.000 0.00 0.00 0.00 2.39
2411 2854 1.681486 TTGACGTGAGACTGGCACCA 61.681 55.000 0.00 0.00 32.74 4.17
2412 2855 0.946221 CTTGACGTGAGACTGGCACC 60.946 60.000 0.00 0.00 32.74 5.01
2422 2865 1.601419 GACGGGGGATCTTGACGTGA 61.601 60.000 0.00 0.00 37.96 4.35
2426 2869 1.993391 TGGGACGGGGGATCTTGAC 60.993 63.158 0.00 0.00 0.00 3.18
2443 2886 1.662686 AGAAGGGGGAGGAAGAAGTG 58.337 55.000 0.00 0.00 0.00 3.16
2470 2913 5.136048 AGGAGGAGGAAGTGATTCTCTAGAT 59.864 44.000 0.00 0.00 0.00 1.98
2474 2917 3.629796 GGAGGAGGAGGAAGTGATTCTCT 60.630 52.174 0.00 0.00 0.00 3.10
2482 2925 0.793617 TGGAAGGAGGAGGAGGAAGT 59.206 55.000 0.00 0.00 0.00 3.01
2487 2930 0.911525 TGGCTTGGAAGGAGGAGGAG 60.912 60.000 0.00 0.00 0.00 3.69
2502 2945 3.435275 TCATAGAGACTCACTGTTGGCT 58.565 45.455 5.02 0.00 0.00 4.75
2503 2946 3.876274 TCATAGAGACTCACTGTTGGC 57.124 47.619 5.02 0.00 0.00 4.52
2507 2950 4.079500 TCCCTGATCATAGAGACTCACTGT 60.080 45.833 5.02 0.00 0.00 3.55
2508 2951 4.468713 TCCCTGATCATAGAGACTCACTG 58.531 47.826 5.02 1.70 0.00 3.66
2509 2952 4.728772 CTCCCTGATCATAGAGACTCACT 58.271 47.826 14.19 0.00 0.00 3.41
2510 2953 3.255642 GCTCCCTGATCATAGAGACTCAC 59.744 52.174 20.73 4.43 0.00 3.51
2511 2954 3.117360 TGCTCCCTGATCATAGAGACTCA 60.117 47.826 20.73 10.07 0.00 3.41
2512 2955 3.495331 TGCTCCCTGATCATAGAGACTC 58.505 50.000 20.73 0.00 0.00 3.36
2513 2956 3.609256 TGCTCCCTGATCATAGAGACT 57.391 47.619 20.73 0.00 0.00 3.24
2514 2957 4.679373 TTTGCTCCCTGATCATAGAGAC 57.321 45.455 20.73 13.99 0.00 3.36
2524 2967 3.517296 TGGTGTAATTTTGCTCCCTGA 57.483 42.857 0.00 0.00 0.00 3.86
2566 3009 4.080582 CACAGATACCATGACCCTTGGTTA 60.081 45.833 9.35 0.00 45.19 2.85
2576 3019 8.218423 ACCAATATTATCCACAGATACCATGA 57.782 34.615 0.00 0.00 34.63 3.07
2577 3020 9.605275 CTACCAATATTATCCACAGATACCATG 57.395 37.037 0.00 0.00 34.63 3.66
2578 3021 9.560860 TCTACCAATATTATCCACAGATACCAT 57.439 33.333 0.00 0.00 34.63 3.55
2579 3022 8.966155 TCTACCAATATTATCCACAGATACCA 57.034 34.615 0.00 0.00 34.63 3.25
2580 3023 9.823647 CATCTACCAATATTATCCACAGATACC 57.176 37.037 0.00 0.00 34.63 2.73
2645 3089 6.480763 TGAAGCCTTCCATGTTATAAGTTCA 58.519 36.000 1.21 0.00 0.00 3.18
2646 3090 6.599638 ACTGAAGCCTTCCATGTTATAAGTTC 59.400 38.462 1.21 0.00 0.00 3.01
2664 3108 8.579682 AGAAAATTTCACATTGTTACTGAAGC 57.420 30.769 8.55 0.00 0.00 3.86
2717 3161 6.530601 ACAATATTGCCCCTTCTTACCTAT 57.469 37.500 15.48 0.00 0.00 2.57
2745 3189 8.917088 CCTCACTTGGGATTATGTTTAAATGAT 58.083 33.333 0.00 0.00 0.00 2.45
2747 3191 8.066612 ACCTCACTTGGGATTATGTTTAAATG 57.933 34.615 0.00 0.00 0.00 2.32
2748 3192 8.116026 AGACCTCACTTGGGATTATGTTTAAAT 58.884 33.333 0.00 0.00 0.00 1.40
2753 3197 5.520748 AAGACCTCACTTGGGATTATGTT 57.479 39.130 0.00 0.00 0.00 2.71
2835 3280 9.104713 AGATATCTGTTTTTCCCCTGAATTTTT 57.895 29.630 3.89 0.00 0.00 1.94
2839 3284 7.364144 GCAAAGATATCTGTTTTTCCCCTGAAT 60.364 37.037 5.86 0.00 0.00 2.57
2840 3285 6.071391 GCAAAGATATCTGTTTTTCCCCTGAA 60.071 38.462 5.86 0.00 0.00 3.02
2853 3298 4.724074 TGCTTTTGGGCAAAGATATCTG 57.276 40.909 5.86 0.00 44.40 2.90
2854 3299 5.945144 AATGCTTTTGGGCAAAGATATCT 57.055 34.783 0.00 0.00 44.40 1.98
2856 3301 6.052405 TCAAATGCTTTTGGGCAAAGATAT 57.948 33.333 21.07 0.00 44.40 1.63
2858 3303 4.354893 TCAAATGCTTTTGGGCAAAGAT 57.645 36.364 21.07 0.00 44.40 2.40
2859 3304 3.834489 TCAAATGCTTTTGGGCAAAGA 57.166 38.095 21.07 1.68 44.40 2.52
2860 3305 4.897025 TTTCAAATGCTTTTGGGCAAAG 57.103 36.364 21.07 0.00 45.68 2.77
2864 3309 6.271566 TGAAAATTTTCAAATGCTTTTGGGC 58.728 32.000 27.22 0.38 43.62 5.36
2899 3346 7.930513 ACTTTCCTCGAATTCAACAAAATTC 57.069 32.000 6.22 0.00 40.63 2.17
2902 3349 7.093992 ACAAACTTTCCTCGAATTCAACAAAA 58.906 30.769 6.22 0.31 0.00 2.44
2927 3374 3.254657 CCAGCCAGAATTTACGGTTTTGA 59.745 43.478 0.00 0.00 0.00 2.69
2935 3382 9.140286 GAAAGAAAAATACCAGCCAGAATTTAC 57.860 33.333 0.00 0.00 0.00 2.01
3023 3476 2.060383 GGAGCAAAATGGAGGGCCC 61.060 63.158 16.46 16.46 0.00 5.80
3095 3548 5.552870 ACACAGTTTCTCCTACATGTTCT 57.447 39.130 2.30 0.00 0.00 3.01
3166 3627 6.732896 TTTCCACTGCCCATAGTTTTTAAA 57.267 33.333 0.00 0.00 0.00 1.52
3181 3642 4.307432 AGAGTGAACGTACATTTCCACTG 58.693 43.478 1.28 0.00 0.00 3.66
3182 3643 4.557205 GAGAGTGAACGTACATTTCCACT 58.443 43.478 0.00 0.00 0.00 4.00
3207 3668 2.446994 TCAGTTGGGTGGGACCGT 60.447 61.111 0.00 0.00 39.83 4.83
3208 3669 2.347490 CTCAGTTGGGTGGGACCG 59.653 66.667 0.00 0.00 39.83 4.79
3209 3670 2.034221 GCTCAGTTGGGTGGGACC 59.966 66.667 0.00 0.00 37.60 4.46
3210 3671 1.003233 GAGCTCAGTTGGGTGGGAC 60.003 63.158 9.40 0.00 0.00 4.46
3211 3672 1.059584 TTGAGCTCAGTTGGGTGGGA 61.060 55.000 17.43 0.00 0.00 4.37
3212 3673 0.890996 GTTGAGCTCAGTTGGGTGGG 60.891 60.000 17.43 0.00 0.00 4.61
3213 3674 0.109342 AGTTGAGCTCAGTTGGGTGG 59.891 55.000 17.43 0.00 0.00 4.61
3214 3675 2.839486 TAGTTGAGCTCAGTTGGGTG 57.161 50.000 17.43 0.00 0.00 4.61
3232 3693 6.999950 ACACGGTGCAAATATGGAGTATATA 58.000 36.000 8.30 0.00 31.68 0.86
3243 3704 2.665649 ATCGAGACACGGTGCAAATA 57.334 45.000 8.30 0.00 42.82 1.40
3321 3782 5.499139 TCGACAGTCTTTTGAGCAAAAAT 57.501 34.783 9.39 0.00 39.49 1.82
3380 3841 8.946085 GGATCATGTGATACTCAAGTAAAAACA 58.054 33.333 0.00 0.74 34.37 2.83
3384 3845 7.125659 TCCAGGATCATGTGATACTCAAGTAAA 59.874 37.037 6.62 0.00 41.82 2.01
3451 3914 0.036388 CATAATAGGGGCGCGACCAT 60.036 55.000 35.87 31.47 42.05 3.55
3543 4019 4.388165 CGCATATCTTTCTCCATGCTACTG 59.612 45.833 4.15 0.00 41.25 2.74
3544 4020 4.564041 CGCATATCTTTCTCCATGCTACT 58.436 43.478 4.15 0.00 41.25 2.57
3545 4021 3.124297 GCGCATATCTTTCTCCATGCTAC 59.876 47.826 0.30 0.00 41.25 3.58
3646 4122 8.671028 GTGACTTGAGTTAGAAACAAAAAGGTA 58.329 33.333 0.00 0.00 0.00 3.08
3647 4123 7.535997 GTGACTTGAGTTAGAAACAAAAAGGT 58.464 34.615 0.00 0.00 0.00 3.50
3648 4124 6.687105 CGTGACTTGAGTTAGAAACAAAAAGG 59.313 38.462 0.00 0.00 0.00 3.11
3649 4125 6.194692 GCGTGACTTGAGTTAGAAACAAAAAG 59.805 38.462 0.00 0.00 0.00 2.27
3650 4126 6.025280 GCGTGACTTGAGTTAGAAACAAAAA 58.975 36.000 0.00 0.00 0.00 1.94
3696 4172 3.829026 AGCAAGATAGAGCCGACATGATA 59.171 43.478 0.00 0.00 0.00 2.15
3697 4173 2.632028 AGCAAGATAGAGCCGACATGAT 59.368 45.455 0.00 0.00 0.00 2.45
3725 4201 0.388134 TTACGTGAAGCGCTGGAGAC 60.388 55.000 12.58 4.36 46.11 3.36
3781 4261 3.464907 GAGTAGAGACACATGCATGCAT 58.535 45.455 27.46 27.46 37.08 3.96
3782 4262 2.419159 GGAGTAGAGACACATGCATGCA 60.419 50.000 26.53 25.04 0.00 3.96
3783 4263 2.208431 GGAGTAGAGACACATGCATGC 58.792 52.381 26.53 11.82 0.00 4.06
3784 4264 3.118847 AGTGGAGTAGAGACACATGCATG 60.119 47.826 25.09 25.09 37.58 4.06
3785 4265 3.102972 AGTGGAGTAGAGACACATGCAT 58.897 45.455 0.00 0.00 37.58 3.96
3819 4299 4.517453 AGCTAGCTAGGAAACTACTCATCG 59.483 45.833 17.69 0.00 43.67 3.84
3972 4456 6.494893 ACATGAAGCACGAAAGCTAATTAA 57.505 33.333 0.00 0.00 45.89 1.40
3973 4457 6.238103 GCTACATGAAGCACGAAAGCTAATTA 60.238 38.462 0.00 0.00 45.89 1.40
3974 4458 5.447818 GCTACATGAAGCACGAAAGCTAATT 60.448 40.000 0.00 0.00 45.89 1.40
3975 4459 4.034510 GCTACATGAAGCACGAAAGCTAAT 59.965 41.667 0.00 0.00 45.89 1.73
4162 4647 3.686016 TGAAACTCAGATAGGGCAAACC 58.314 45.455 0.00 0.00 40.67 3.27
4423 4908 4.214971 AGCAAACTCAGTTTCTAGCACATG 59.785 41.667 12.28 0.00 33.10 3.21
4428 4924 5.468409 AGAAGAAGCAAACTCAGTTTCTAGC 59.532 40.000 0.00 1.11 35.84 3.42
4456 4952 7.813627 ACGGCAAACTAAGTTTCACTTTAAAAA 59.186 29.630 0.00 0.00 39.51 1.94
4457 4953 7.314393 ACGGCAAACTAAGTTTCACTTTAAAA 58.686 30.769 0.00 0.00 39.51 1.52
4458 4954 6.854778 ACGGCAAACTAAGTTTCACTTTAAA 58.145 32.000 0.00 0.00 39.51 1.52
4459 4955 6.439675 ACGGCAAACTAAGTTTCACTTTAA 57.560 33.333 0.00 0.00 39.51 1.52
4460 4956 7.551035 TTACGGCAAACTAAGTTTCACTTTA 57.449 32.000 0.00 0.00 39.51 1.85
4461 4957 4.976224 ACGGCAAACTAAGTTTCACTTT 57.024 36.364 0.00 0.00 39.51 2.66
4462 4958 6.439675 TTTACGGCAAACTAAGTTTCACTT 57.560 33.333 0.00 0.00 41.97 3.16
4463 4959 6.439675 TTTTACGGCAAACTAAGTTTCACT 57.560 33.333 0.00 0.00 33.10 3.41
4464 4960 7.136772 AGATTTTACGGCAAACTAAGTTTCAC 58.863 34.615 0.00 0.00 33.10 3.18
4465 4961 7.266922 AGATTTTACGGCAAACTAAGTTTCA 57.733 32.000 0.00 0.00 33.10 2.69
4466 4962 8.715088 TCTAGATTTTACGGCAAACTAAGTTTC 58.285 33.333 0.00 0.00 33.10 2.78
4467 4963 8.611654 TCTAGATTTTACGGCAAACTAAGTTT 57.388 30.769 0.00 0.00 36.05 2.66
4468 4964 8.665685 CATCTAGATTTTACGGCAAACTAAGTT 58.334 33.333 1.33 0.00 0.00 2.66
4469 4965 7.201617 GCATCTAGATTTTACGGCAAACTAAGT 60.202 37.037 1.33 0.00 0.00 2.24
4470 4966 7.011482 AGCATCTAGATTTTACGGCAAACTAAG 59.989 37.037 1.33 0.00 0.00 2.18
4471 4967 6.821665 AGCATCTAGATTTTACGGCAAACTAA 59.178 34.615 1.33 0.00 0.00 2.24
4472 4968 6.346096 AGCATCTAGATTTTACGGCAAACTA 58.654 36.000 1.33 0.00 0.00 2.24
4473 4969 5.186198 AGCATCTAGATTTTACGGCAAACT 58.814 37.500 1.33 0.00 0.00 2.66
4474 4970 5.485662 AGCATCTAGATTTTACGGCAAAC 57.514 39.130 1.33 0.00 0.00 2.93
4475 4971 7.801716 AATAGCATCTAGATTTTACGGCAAA 57.198 32.000 1.33 0.00 0.00 3.68
4476 4972 7.386848 GGTAATAGCATCTAGATTTTACGGCAA 59.613 37.037 1.33 0.00 0.00 4.52
4477 4973 6.872020 GGTAATAGCATCTAGATTTTACGGCA 59.128 38.462 1.33 0.00 0.00 5.69
4478 4974 6.872020 TGGTAATAGCATCTAGATTTTACGGC 59.128 38.462 1.33 2.31 0.00 5.68
4479 4975 7.331193 GGTGGTAATAGCATCTAGATTTTACGG 59.669 40.741 1.33 0.00 0.00 4.02
4480 4976 8.088981 AGGTGGTAATAGCATCTAGATTTTACG 58.911 37.037 3.06 0.00 34.92 3.18
4481 4977 9.780186 AAGGTGGTAATAGCATCTAGATTTTAC 57.220 33.333 5.60 8.78 35.77 2.01
4482 4978 9.998106 GAAGGTGGTAATAGCATCTAGATTTTA 57.002 33.333 5.60 0.00 35.77 1.52
4488 4984 7.540474 TTAGGAAGGTGGTAATAGCATCTAG 57.460 40.000 5.60 0.00 35.77 2.43
4491 4987 9.740710 ATATTTTAGGAAGGTGGTAATAGCATC 57.259 33.333 0.00 0.00 0.00 3.91
4521 5017 8.018537 TGGATGTATTGTACTAGCACATACTT 57.981 34.615 14.07 1.46 32.66 2.24
4529 5108 9.884465 GAAAATGATTGGATGTATTGTACTAGC 57.116 33.333 0.00 0.00 0.00 3.42
4544 5123 9.289303 CGTCAATTAGTAAAGGAAAATGATTGG 57.711 33.333 0.00 0.00 0.00 3.16
4565 5144 4.837896 TTTGCACATATCCAAACGTCAA 57.162 36.364 0.00 0.00 0.00 3.18
4566 5145 4.837896 TTTTGCACATATCCAAACGTCA 57.162 36.364 0.00 0.00 31.30 4.35
4603 5182 6.920210 CCCTTGAGAAAACAAATTCTTCACTC 59.080 38.462 0.00 0.00 39.70 3.51
4612 5191 8.534496 CCAATATCTTCCCTTGAGAAAACAAAT 58.466 33.333 0.00 0.00 0.00 2.32
4616 5196 5.418840 TGCCAATATCTTCCCTTGAGAAAAC 59.581 40.000 0.00 0.00 0.00 2.43
4620 5200 4.413189 TGATGCCAATATCTTCCCTTGAGA 59.587 41.667 0.00 0.00 0.00 3.27
4635 5215 7.804843 ATTTTCAAGACAAATTTGATGCCAA 57.195 28.000 24.64 14.06 34.76 4.52
4713 5293 9.436957 GTCTCCAGTTCATAATTTTCACTCTTA 57.563 33.333 0.00 0.00 0.00 2.10
4714 5294 7.391833 GGTCTCCAGTTCATAATTTTCACTCTT 59.608 37.037 0.00 0.00 0.00 2.85
4715 5295 6.881602 GGTCTCCAGTTCATAATTTTCACTCT 59.118 38.462 0.00 0.00 0.00 3.24
4716 5296 6.655003 TGGTCTCCAGTTCATAATTTTCACTC 59.345 38.462 0.00 0.00 0.00 3.51
4717 5297 6.542821 TGGTCTCCAGTTCATAATTTTCACT 58.457 36.000 0.00 0.00 0.00 3.41
4730 5310 2.887152 GCTTTTGACATGGTCTCCAGTT 59.113 45.455 0.00 0.00 36.75 3.16
4737 5317 5.824904 ATGATGTAGCTTTTGACATGGTC 57.175 39.130 4.58 0.00 36.42 4.02
4750 5330 6.488006 ACTCCCAATGTTCATTATGATGTAGC 59.512 38.462 0.00 0.00 34.77 3.58
4754 5334 5.508489 GGCACTCCCAATGTTCATTATGATG 60.508 44.000 0.00 0.00 34.46 3.07
4760 5340 2.307496 TGGCACTCCCAATGTTCATT 57.693 45.000 0.00 0.00 41.82 2.57
4792 5379 8.845227 TGCAAAGAAGAAATTAACACTGATACA 58.155 29.630 0.00 0.00 0.00 2.29
4793 5380 9.334693 CTGCAAAGAAGAAATTAACACTGATAC 57.665 33.333 0.00 0.00 0.00 2.24
4806 5393 4.466015 ACTTGAAACCCTGCAAAGAAGAAA 59.534 37.500 0.00 0.00 0.00 2.52
4810 5397 3.360867 TGACTTGAAACCCTGCAAAGAA 58.639 40.909 0.00 0.00 0.00 2.52
4812 5399 3.491447 CCTTGACTTGAAACCCTGCAAAG 60.491 47.826 0.00 0.00 0.00 2.77
4813 5400 2.430332 CCTTGACTTGAAACCCTGCAAA 59.570 45.455 0.00 0.00 0.00 3.68
5058 5654 1.275291 CGGGTTGGAGAACAGCTAAGA 59.725 52.381 0.00 0.00 33.27 2.10
5076 5672 5.365403 TTTGGTGTAAGCTTAATCAACGG 57.635 39.130 7.99 0.00 33.76 4.44
5077 5673 6.435428 AGTTTTGGTGTAAGCTTAATCAACG 58.565 36.000 7.99 0.00 33.76 4.10
5247 5858 7.979537 ACGCAACTATTATTGACTTACTCATGA 59.020 33.333 0.00 0.00 0.00 3.07
5321 5932 0.957888 GCAGGCCAGTCTCTTCAACC 60.958 60.000 5.01 0.00 0.00 3.77
5451 6062 6.223852 AGCGAACGAATTTAGATGGTGATAT 58.776 36.000 0.00 0.00 0.00 1.63
5452 6063 5.597806 AGCGAACGAATTTAGATGGTGATA 58.402 37.500 0.00 0.00 0.00 2.15
5453 6064 4.442706 AGCGAACGAATTTAGATGGTGAT 58.557 39.130 0.00 0.00 0.00 3.06
5454 6065 3.857052 AGCGAACGAATTTAGATGGTGA 58.143 40.909 0.00 0.00 0.00 4.02
5455 6066 3.001330 GGAGCGAACGAATTTAGATGGTG 59.999 47.826 0.00 0.00 0.00 4.17
5456 6067 3.195661 GGAGCGAACGAATTTAGATGGT 58.804 45.455 0.00 0.00 0.00 3.55
5458 6069 2.218759 CCGGAGCGAACGAATTTAGATG 59.781 50.000 0.00 0.00 0.00 2.90
5462 6080 2.466846 GATCCGGAGCGAACGAATTTA 58.533 47.619 11.34 0.00 0.00 1.40
5464 6082 0.870307 CGATCCGGAGCGAACGAATT 60.870 55.000 37.30 0.09 43.75 2.17
5484 6103 7.802251 CAGAAGTTGAGTTGATTGAGAAATCAC 59.198 37.037 0.73 0.00 38.76 3.06
5568 6187 8.610896 CACATCAAAGCCAAAAACAAAGATAAA 58.389 29.630 0.00 0.00 0.00 1.40
5569 6188 7.768120 ACACATCAAAGCCAAAAACAAAGATAA 59.232 29.630 0.00 0.00 0.00 1.75
5570 6189 7.271511 ACACATCAAAGCCAAAAACAAAGATA 58.728 30.769 0.00 0.00 0.00 1.98
5571 6190 6.114767 ACACATCAAAGCCAAAAACAAAGAT 58.885 32.000 0.00 0.00 0.00 2.40
5572 6191 5.486526 ACACATCAAAGCCAAAAACAAAGA 58.513 33.333 0.00 0.00 0.00 2.52
5573 6192 5.799681 ACACATCAAAGCCAAAAACAAAG 57.200 34.783 0.00 0.00 0.00 2.77
5576 6195 5.752472 CACATACACATCAAAGCCAAAAACA 59.248 36.000 0.00 0.00 0.00 2.83
5592 6211 3.118738 ACCTAAGCTACCTGCACATACAC 60.119 47.826 0.00 0.00 45.94 2.90
5610 6229 0.771127 ACTTTTGCAGCTCCCACCTA 59.229 50.000 0.00 0.00 0.00 3.08
5611 6230 0.825010 CACTTTTGCAGCTCCCACCT 60.825 55.000 0.00 0.00 0.00 4.00
5612 6231 1.662044 CACTTTTGCAGCTCCCACC 59.338 57.895 0.00 0.00 0.00 4.61
5627 6246 9.942850 TGTATATGCATGTATATACTTTGCACT 57.057 29.630 34.43 24.36 43.39 4.40
5652 6271 4.923871 GTGTGATTAGGCGTCAGGTATATG 59.076 45.833 0.00 0.00 0.00 1.78
5653 6272 4.321008 CGTGTGATTAGGCGTCAGGTATAT 60.321 45.833 0.00 0.00 0.00 0.86
5699 6320 7.492020 CCAGATCTTCTTATTTCTCTGTGTCTG 59.508 40.741 0.00 0.00 0.00 3.51
5703 6324 8.961294 AATCCAGATCTTCTTATTTCTCTGTG 57.039 34.615 0.00 0.00 0.00 3.66
5705 6326 9.610705 TTGAATCCAGATCTTCTTATTTCTCTG 57.389 33.333 0.00 0.00 0.00 3.35
5817 6438 8.877808 TTGAGTATACAATATCAGCTCAACAG 57.122 34.615 5.50 0.00 36.82 3.16
5887 6516 5.509501 GCACAGGAATGAATCTTTGGAAACA 60.510 40.000 0.00 0.00 39.83 2.83
5890 6519 4.151121 TGCACAGGAATGAATCTTTGGAA 58.849 39.130 0.00 0.00 0.00 3.53
5897 6526 7.444629 ACATACATATGCACAGGAATGAATC 57.555 36.000 1.58 0.00 37.19 2.52
5930 6559 1.597742 CCGTAGAAGGCCATGGAATG 58.402 55.000 18.40 0.00 46.21 2.67
5956 6585 5.166398 GCATCTCCTTTTCTTTGGTCATTG 58.834 41.667 0.00 0.00 0.00 2.82
5972 6601 2.894387 GCAGAGGTGCGCATCTCC 60.894 66.667 39.80 25.57 39.36 3.71
6008 6637 2.385315 CTATGGACGACAGCACATACG 58.615 52.381 0.00 0.00 0.00 3.06
6018 6647 4.024387 TGAAACAAAACAGCTATGGACGAC 60.024 41.667 0.00 0.00 0.00 4.34
6019 6648 4.130857 TGAAACAAAACAGCTATGGACGA 58.869 39.130 0.00 0.00 0.00 4.20
6020 6649 4.481930 TGAAACAAAACAGCTATGGACG 57.518 40.909 0.00 0.00 0.00 4.79
6108 6742 2.166459 CAGCACTAGAGATTCCGTTCCA 59.834 50.000 0.00 0.00 0.00 3.53
6140 6774 9.357161 AGTTTGGTGTACCTAATTTGATACAAA 57.643 29.630 0.00 0.00 33.61 2.83
6274 6950 1.227645 CTGCGCCATAGCTGCCTAA 60.228 57.895 4.18 0.00 37.61 2.69
6288 6964 5.050363 ACCGTTTGCATAACTATAATCTGCG 60.050 40.000 9.17 0.00 35.63 5.18
6310 6986 0.326927 TTGCACCAGTAAGGCCTACC 59.673 55.000 5.16 0.00 43.14 3.18
6348 7024 5.163131 GGCTTTACCCTGATATTTGACCCTA 60.163 44.000 0.00 0.00 0.00 3.53
6397 7073 0.252197 AGTAGGTGGTCGGCAATTCC 59.748 55.000 0.00 0.00 0.00 3.01
6557 7233 6.043938 TCTGTAGTTCCTCTGGGTGTTAAAAT 59.956 38.462 0.00 0.00 0.00 1.82
6585 7261 2.495669 TGGTCGACTATGAACTGCATCA 59.504 45.455 16.46 0.00 38.44 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.