Multiple sequence alignment - TraesCS4B01G345600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G345600 chr4B 100.000 5645 0 0 1 5645 639127296 639121652 0.000000e+00 10425
1 TraesCS4B01G345600 chr4B 96.610 59 2 0 3968 4026 18092030 18091972 1.290000e-16 99
2 TraesCS4B01G345600 chr4D 89.936 5763 268 122 3 5645 497899489 497893919 0.000000e+00 7142
3 TraesCS4B01G345600 chr4D 98.361 61 1 0 3968 4028 9443894 9443834 2.150000e-19 108
4 TraesCS4B01G345600 chr4D 92.105 76 6 0 3961 4036 450331546 450331471 2.150000e-19 108
5 TraesCS4B01G345600 chr5A 89.409 2266 124 42 682 2908 678206216 678204028 0.000000e+00 2748
6 TraesCS4B01G345600 chr5A 86.117 2197 103 89 3144 5253 678203571 678201490 0.000000e+00 2182
7 TraesCS4B01G345600 chr5A 91.130 575 21 23 5 559 678207035 678206471 0.000000e+00 752
8 TraesCS4B01G345600 chr5A 97.297 74 2 0 559 632 678206296 678206223 5.940000e-25 126
9 TraesCS4B01G345600 chr2D 89.820 334 33 1 5312 5645 354750330 354750662 1.450000e-115 427
10 TraesCS4B01G345600 chr2D 79.370 349 57 14 5304 5645 585937552 585937892 1.220000e-56 231
11 TraesCS4B01G345600 chr2A 80.636 346 54 12 5307 5645 769783174 769782835 7.260000e-64 255
12 TraesCS4B01G345600 chr1A 79.290 338 62 7 5313 5645 286016202 286015868 4.400000e-56 230
13 TraesCS4B01G345600 chr7D 79.394 330 56 11 5321 5645 453186848 453186526 7.360000e-54 222
14 TraesCS4B01G345600 chr5D 79.056 339 57 12 5314 5645 116029766 116030097 2.650000e-53 220
15 TraesCS4B01G345600 chr5D 78.824 340 57 14 5313 5645 156572709 156573040 1.230000e-51 215
16 TraesCS4B01G345600 chr1D 79.056 339 58 11 5314 5645 83942038 83942370 2.650000e-53 220
17 TraesCS4B01G345600 chr1D 94.118 68 4 0 1736 1803 46117619 46117552 2.780000e-18 104
18 TraesCS4B01G345600 chr4A 94.118 68 4 0 3961 4028 594004218 594004285 2.780000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G345600 chr4B 639121652 639127296 5644 True 10425 10425 100.00000 1 5645 1 chr4B.!!$R2 5644
1 TraesCS4B01G345600 chr4D 497893919 497899489 5570 True 7142 7142 89.93600 3 5645 1 chr4D.!!$R3 5642
2 TraesCS4B01G345600 chr5A 678201490 678207035 5545 True 1452 2748 90.98825 5 5253 4 chr5A.!!$R1 5248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 868 0.385751 TAGCTAGCTCCGTGTGATGC 59.614 55.0 23.26 0.0 0.00 3.91 F
1770 2025 0.321919 TCATCCAAGCACAGCTCCAC 60.322 55.0 0.00 0.0 38.25 4.02 F
2011 2283 0.536006 ATTCCCTTGCCTCGCATAGC 60.536 55.0 0.00 0.0 38.76 2.97 F
3798 4355 0.175760 CACTAGCTACCCGTGTGCAT 59.824 55.0 0.00 0.0 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 2064 0.038021 TGCCACTGCCTGCTAATTGA 59.962 50.0 0.00 0.0 36.33 2.57 R
3697 4252 0.596577 GCTCGGATACCTGCACGATA 59.403 55.0 0.00 0.0 34.60 2.92 R
3928 4487 0.040870 CGCGCAACACACCATTTACA 60.041 50.0 8.75 0.0 0.00 2.41 R
5060 5663 0.035458 CCCCTAGACAATCATCCGGC 59.965 60.0 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 57 2.237392 CTCCAAAACCTGGTAGCTAGCT 59.763 50.000 23.12 23.12 46.51 3.32
51 58 3.446968 TCCAAAACCTGGTAGCTAGCTA 58.553 45.455 20.67 20.67 46.51 3.32
52 59 3.451178 TCCAAAACCTGGTAGCTAGCTAG 59.549 47.826 24.78 16.84 46.51 3.42
53 60 3.989934 CCAAAACCTGGTAGCTAGCTAGC 60.990 52.174 36.03 36.03 43.97 3.42
78 85 4.622313 CGTACGTTTCCACACTAGCAAATA 59.378 41.667 7.22 0.00 0.00 1.40
79 86 5.443693 CGTACGTTTCCACACTAGCAAATAC 60.444 44.000 7.22 0.00 0.00 1.89
381 400 4.766891 TGCTTTTTCCCGATGAGATCTTTT 59.233 37.500 0.00 0.00 0.00 2.27
443 462 1.589716 ATCCGCTGCTGGCTTTTCAC 61.590 55.000 0.00 0.00 39.13 3.18
488 509 1.719600 GCGAGATTCTTGCTGTGACT 58.280 50.000 17.19 0.00 37.84 3.41
489 510 1.392853 GCGAGATTCTTGCTGTGACTG 59.607 52.381 17.19 0.00 37.84 3.51
490 511 2.928301 GCGAGATTCTTGCTGTGACTGA 60.928 50.000 17.19 0.00 37.84 3.41
491 512 2.922387 CGAGATTCTTGCTGTGACTGAG 59.078 50.000 0.00 0.00 0.00 3.35
493 514 2.636893 AGATTCTTGCTGTGACTGAGGT 59.363 45.455 0.00 0.00 0.00 3.85
495 516 1.413118 TCTTGCTGTGACTGAGGTGA 58.587 50.000 0.00 0.00 0.00 4.02
496 517 1.342496 TCTTGCTGTGACTGAGGTGAG 59.658 52.381 0.00 0.00 0.00 3.51
497 518 0.394192 TTGCTGTGACTGAGGTGAGG 59.606 55.000 0.00 0.00 0.00 3.86
566 762 5.888161 GTCTTGGATAGTTGGATTGGATTGT 59.112 40.000 0.00 0.00 0.00 2.71
591 787 2.729156 GCTACCTGCAACGCATCTTTTC 60.729 50.000 0.00 0.00 42.31 2.29
672 868 0.385751 TAGCTAGCTCCGTGTGATGC 59.614 55.000 23.26 0.00 0.00 3.91
680 876 0.388006 TCCGTGTGATGCGTGTAGTG 60.388 55.000 0.00 0.00 0.00 2.74
683 879 1.401800 CGTGTGATGCGTGTAGTGGTA 60.402 52.381 0.00 0.00 0.00 3.25
684 880 2.259618 GTGTGATGCGTGTAGTGGTAG 58.740 52.381 0.00 0.00 0.00 3.18
685 881 1.890489 TGTGATGCGTGTAGTGGTAGT 59.110 47.619 0.00 0.00 0.00 2.73
686 882 3.083293 TGTGATGCGTGTAGTGGTAGTA 58.917 45.455 0.00 0.00 0.00 1.82
687 883 3.128068 TGTGATGCGTGTAGTGGTAGTAG 59.872 47.826 0.00 0.00 0.00 2.57
688 884 3.128242 GTGATGCGTGTAGTGGTAGTAGT 59.872 47.826 0.00 0.00 0.00 2.73
689 885 3.128068 TGATGCGTGTAGTGGTAGTAGTG 59.872 47.826 0.00 0.00 0.00 2.74
690 886 2.781923 TGCGTGTAGTGGTAGTAGTGA 58.218 47.619 0.00 0.00 0.00 3.41
691 887 2.745821 TGCGTGTAGTGGTAGTAGTGAG 59.254 50.000 0.00 0.00 0.00 3.51
692 888 2.477525 GCGTGTAGTGGTAGTAGTGAGC 60.478 54.545 0.00 0.00 0.00 4.26
699 895 5.331876 AGTGGTAGTAGTGAGCATTTCTC 57.668 43.478 0.00 0.00 42.23 2.87
741 937 3.065925 GCCTTGTTGATTAGCTAGCTTGG 59.934 47.826 24.88 11.69 0.00 3.61
779 975 2.540101 GGAGTGACTAATCAATTCGCGG 59.460 50.000 6.13 0.00 36.31 6.46
819 1016 1.345089 TGGAAAGATTTGGTCGTCCGA 59.655 47.619 0.00 0.00 38.22 4.55
820 1017 2.000447 GGAAAGATTTGGTCGTCCGAG 59.000 52.381 0.00 0.00 36.30 4.63
821 1018 1.393883 GAAAGATTTGGTCGTCCGAGC 59.606 52.381 11.63 11.63 42.37 5.03
822 1019 0.608640 AAGATTTGGTCGTCCGAGCT 59.391 50.000 18.24 0.00 42.49 4.09
823 1020 1.471119 AGATTTGGTCGTCCGAGCTA 58.529 50.000 18.24 9.37 42.49 3.32
824 1021 2.032620 AGATTTGGTCGTCCGAGCTAT 58.967 47.619 18.24 12.02 42.49 2.97
825 1022 3.220110 AGATTTGGTCGTCCGAGCTATA 58.780 45.455 18.24 5.74 42.49 1.31
826 1023 3.827302 AGATTTGGTCGTCCGAGCTATAT 59.173 43.478 18.24 9.63 42.49 0.86
827 1024 3.364889 TTTGGTCGTCCGAGCTATATG 57.635 47.619 18.24 0.00 42.49 1.78
828 1025 1.977056 TGGTCGTCCGAGCTATATGT 58.023 50.000 18.24 0.00 42.49 2.29
829 1026 3.130280 TGGTCGTCCGAGCTATATGTA 57.870 47.619 18.24 0.00 42.49 2.29
830 1027 2.810274 TGGTCGTCCGAGCTATATGTAC 59.190 50.000 18.24 0.00 42.49 2.90
831 1028 3.072944 GGTCGTCCGAGCTATATGTACT 58.927 50.000 11.30 0.00 39.31 2.73
832 1029 4.248859 GGTCGTCCGAGCTATATGTACTA 58.751 47.826 11.30 0.00 39.31 1.82
833 1030 4.874966 GGTCGTCCGAGCTATATGTACTAT 59.125 45.833 11.30 0.00 39.31 2.12
834 1031 5.006552 GGTCGTCCGAGCTATATGTACTATC 59.993 48.000 11.30 0.00 39.31 2.08
835 1032 5.811613 GTCGTCCGAGCTATATGTACTATCT 59.188 44.000 0.00 0.00 0.00 1.98
836 1033 6.019640 GTCGTCCGAGCTATATGTACTATCTC 60.020 46.154 0.00 0.00 0.00 2.75
837 1034 6.044046 CGTCCGAGCTATATGTACTATCTCT 58.956 44.000 0.00 0.00 0.00 3.10
877 1093 3.502191 AGTGAGCTCATCTCTTTCGAC 57.498 47.619 21.47 2.37 42.38 4.20
885 1101 3.653344 TCATCTCTTTCGACTGGTGTTG 58.347 45.455 0.00 0.00 0.00 3.33
910 1126 3.115554 CCCTTTTGTCTCGTTTGCTTTG 58.884 45.455 0.00 0.00 0.00 2.77
936 1152 1.269726 GCTGATTGGTTTGGTGGTGTG 60.270 52.381 0.00 0.00 0.00 3.82
951 1167 2.361757 TGGTGTGATTTGCTTCAGTTGG 59.638 45.455 0.00 0.00 0.00 3.77
955 1174 4.217118 GTGTGATTTGCTTCAGTTGGATCT 59.783 41.667 0.00 0.00 0.00 2.75
987 1206 3.708563 CCTTTTGGTGGTGTGTAAGTG 57.291 47.619 0.00 0.00 34.07 3.16
988 1207 3.020984 CCTTTTGGTGGTGTGTAAGTGT 58.979 45.455 0.00 0.00 34.07 3.55
1223 1442 4.148825 AGGAGACGGCCACGATGC 62.149 66.667 2.24 0.00 44.60 3.91
1291 1510 4.479993 ATCACCAGCCGAGCCAGC 62.480 66.667 0.00 0.00 0.00 4.85
1551 1779 4.467084 CCCGTGGACATCACCCCG 62.467 72.222 0.00 0.00 43.23 5.73
1770 2025 0.321919 TCATCCAAGCACAGCTCCAC 60.322 55.000 0.00 0.00 38.25 4.02
1807 2064 6.428385 GCAGTTGCTTGATTGATTACTACT 57.572 37.500 0.00 0.00 38.21 2.57
1808 2065 6.481984 GCAGTTGCTTGATTGATTACTACTC 58.518 40.000 0.00 0.00 38.21 2.59
1824 2081 2.119801 ACTCAATTAGCAGGCAGTGG 57.880 50.000 0.00 0.00 0.00 4.00
1875 2137 4.526438 AAGGGAATCTGGGATTGGTTAG 57.474 45.455 0.00 0.00 0.00 2.34
1888 2150 0.688487 TGGTTAGGGGAAAGGTCGTG 59.312 55.000 0.00 0.00 0.00 4.35
1891 2153 1.901833 GTTAGGGGAAAGGTCGTGGTA 59.098 52.381 0.00 0.00 0.00 3.25
1905 2167 2.362369 TGGTAGCAGGAGCAGGAGC 61.362 63.158 0.00 0.00 45.49 4.70
1906 2168 2.362369 GGTAGCAGGAGCAGGAGCA 61.362 63.158 0.00 0.00 45.49 4.26
1907 2169 1.143620 GTAGCAGGAGCAGGAGCAG 59.856 63.158 0.00 0.00 45.49 4.24
1908 2170 2.062777 TAGCAGGAGCAGGAGCAGG 61.063 63.158 0.00 0.00 45.49 4.85
1909 2171 2.520657 TAGCAGGAGCAGGAGCAGGA 62.521 60.000 0.00 0.00 45.49 3.86
1910 2172 2.901813 CAGGAGCAGGAGCAGGAG 59.098 66.667 0.00 0.00 45.49 3.69
1965 2237 1.072965 CTAGGGCAGCTATTCTTGGGG 59.927 57.143 0.00 0.00 0.00 4.96
1967 2239 1.228510 GGCAGCTATTCTTGGGGCT 59.771 57.895 0.00 0.00 35.23 5.19
2008 2280 1.071385 CTCTATTCCCTTGCCTCGCAT 59.929 52.381 0.00 0.00 38.76 4.73
2009 2281 2.300152 CTCTATTCCCTTGCCTCGCATA 59.700 50.000 0.00 0.00 38.76 3.14
2010 2282 2.300152 TCTATTCCCTTGCCTCGCATAG 59.700 50.000 0.00 0.00 38.76 2.23
2011 2283 0.536006 ATTCCCTTGCCTCGCATAGC 60.536 55.000 0.00 0.00 38.76 2.97
2018 2290 2.578714 GCCTCGCATAGCTAGCCCT 61.579 63.158 12.13 0.00 0.00 5.19
2038 2310 3.011821 CCTGGTCCCCTGCTAGATAGATA 59.988 52.174 0.00 0.00 0.00 1.98
2039 2311 4.277476 CTGGTCCCCTGCTAGATAGATAG 58.723 52.174 0.00 0.00 0.00 2.08
2040 2312 3.923425 TGGTCCCCTGCTAGATAGATAGA 59.077 47.826 0.00 0.00 0.00 1.98
2041 2313 4.546195 TGGTCCCCTGCTAGATAGATAGAT 59.454 45.833 0.00 0.00 0.00 1.98
2042 2314 5.736616 TGGTCCCCTGCTAGATAGATAGATA 59.263 44.000 0.00 0.00 0.00 1.98
2043 2315 6.126332 TGGTCCCCTGCTAGATAGATAGATAG 60.126 46.154 0.00 0.00 0.00 2.08
2044 2316 5.768164 GTCCCCTGCTAGATAGATAGATAGC 59.232 48.000 0.00 0.00 40.81 2.97
2045 2317 5.076873 CCCCTGCTAGATAGATAGATAGCC 58.923 50.000 0.00 0.00 39.90 3.93
2046 2318 5.076873 CCCTGCTAGATAGATAGATAGCCC 58.923 50.000 0.00 0.00 39.90 5.19
2112 2386 4.666253 CACCCACACCCTGCCTGG 62.666 72.222 0.00 0.00 0.00 4.45
2172 2446 3.218470 GCAGTGCAGCACCACCAA 61.218 61.111 22.41 0.00 36.38 3.67
2211 2485 4.628333 CGGAGAATTCAATGCAAGCATTTT 59.372 37.500 16.98 9.78 43.32 1.82
2319 2597 1.299850 CTCGACCGCACAAGTCACA 60.300 57.895 0.00 0.00 33.70 3.58
2324 2602 1.889105 CCGCACAAGTCACAGCACT 60.889 57.895 0.00 0.00 0.00 4.40
2327 2605 1.277739 CACAAGTCACAGCACTGCG 59.722 57.895 0.00 0.00 0.00 5.18
2328 2606 1.889105 ACAAGTCACAGCACTGCGG 60.889 57.895 0.00 0.00 0.00 5.69
2372 2650 6.007076 TCTAATTCACTGTTACATTGCCCAA 58.993 36.000 0.00 0.00 0.00 4.12
2374 2652 3.222173 TCACTGTTACATTGCCCAACT 57.778 42.857 0.00 0.00 0.00 3.16
2375 2653 3.561143 TCACTGTTACATTGCCCAACTT 58.439 40.909 0.00 0.00 0.00 2.66
2376 2654 3.317711 TCACTGTTACATTGCCCAACTTG 59.682 43.478 0.00 0.00 0.00 3.16
2377 2655 3.068024 CACTGTTACATTGCCCAACTTGT 59.932 43.478 0.00 0.00 0.00 3.16
2378 2656 4.277174 CACTGTTACATTGCCCAACTTGTA 59.723 41.667 0.00 0.00 0.00 2.41
2388 2666 7.450323 ACATTGCCCAACTTGTACTAATTAACT 59.550 33.333 0.00 0.00 0.00 2.24
2424 2703 3.241995 GGTCAATCGATCGCACAAGTTAC 60.242 47.826 11.09 0.42 0.00 2.50
2439 2718 2.581547 TTACCCGCACCGGCAGTTA 61.582 57.895 0.00 0.00 46.86 2.24
2440 2719 2.510064 TTACCCGCACCGGCAGTTAG 62.510 60.000 0.00 0.00 46.86 2.34
2447 2726 1.196127 GCACCGGCAGTTAGTTGTTAC 59.804 52.381 0.00 0.00 40.72 2.50
2448 2727 2.762745 CACCGGCAGTTAGTTGTTACT 58.237 47.619 0.00 0.00 38.44 2.24
2449 2728 2.478894 CACCGGCAGTTAGTTGTTACTG 59.521 50.000 0.00 0.00 43.58 2.74
2474 2753 5.106712 CCGTGTAATTCACTGTTACATTGCT 60.107 40.000 0.00 0.00 42.18 3.91
2518 2797 0.700564 ATGAGTGGTTGCAGGTGGAT 59.299 50.000 0.00 0.00 0.00 3.41
2815 3094 1.673337 CGGCGGCATGATGATGGAT 60.673 57.895 10.53 0.00 0.00 3.41
2917 3196 2.220653 ACCCGTAAGTAGCAGTACCA 57.779 50.000 0.00 0.00 0.00 3.25
2919 3198 1.135721 CCCGTAAGTAGCAGTACCACC 59.864 57.143 0.00 0.00 0.00 4.61
2931 3263 3.007182 GCAGTACCACCAACCAGTACTTA 59.993 47.826 0.00 0.00 43.11 2.24
3095 3518 9.039870 TGTACATTGAGCAAAGTTAAATTTTGG 57.960 29.630 12.86 0.24 36.33 3.28
3129 3552 4.878397 GGACTAGCTAGCACATTGAATTGT 59.122 41.667 20.91 0.03 0.00 2.71
3133 3556 5.240713 AGCTAGCACATTGAATTGTTAGC 57.759 39.130 18.83 18.60 46.95 3.09
3149 3653 9.827411 GAATTGTTAGCCAGTTAGTTTTCTTAG 57.173 33.333 0.00 0.00 0.00 2.18
3166 3670 9.880064 GTTTTCTTAGTGGAGTTTTCTTCATAC 57.120 33.333 0.00 0.00 37.79 2.39
3267 3778 1.621814 GCATATTGGCCAATGGATGCT 59.378 47.619 37.19 20.31 38.64 3.79
3268 3779 2.827322 GCATATTGGCCAATGGATGCTA 59.173 45.455 37.19 22.34 38.64 3.49
3269 3780 3.367703 GCATATTGGCCAATGGATGCTAC 60.368 47.826 37.19 21.51 38.64 3.58
3270 3781 2.457813 ATTGGCCAATGGATGCTACA 57.542 45.000 30.17 0.00 0.00 2.74
3319 3832 1.667236 CCAGTGTCATGTGTGTGTGT 58.333 50.000 0.00 0.00 0.00 3.72
3320 3833 1.331447 CCAGTGTCATGTGTGTGTGTG 59.669 52.381 0.00 0.00 0.00 3.82
3321 3834 2.009051 CAGTGTCATGTGTGTGTGTGT 58.991 47.619 0.00 0.00 0.00 3.72
3322 3835 2.009051 AGTGTCATGTGTGTGTGTGTG 58.991 47.619 0.00 0.00 0.00 3.82
3323 3836 1.737236 GTGTCATGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
3324 3837 1.736681 TGTCATGTGTGTGTGTGTGTG 59.263 47.619 0.00 0.00 0.00 3.82
3458 3978 4.625742 GCTAGCTCGTGAGTGATTTTGTAA 59.374 41.667 7.70 0.00 0.00 2.41
3516 4040 0.761802 ATGGCTAGCTAGGTGGCTTC 59.238 55.000 26.40 13.62 42.97 3.86
3523 4047 4.261909 GCTAGCTAGGTGGCTTCGTTAATA 60.262 45.833 21.52 0.00 42.97 0.98
3524 4048 4.957684 AGCTAGGTGGCTTCGTTAATAT 57.042 40.909 0.00 0.00 39.86 1.28
3525 4049 6.349944 GCTAGCTAGGTGGCTTCGTTAATATA 60.350 42.308 21.52 0.00 42.97 0.86
3526 4050 6.415206 AGCTAGGTGGCTTCGTTAATATAA 57.585 37.500 0.00 0.00 39.86 0.98
3527 4051 7.005709 AGCTAGGTGGCTTCGTTAATATAAT 57.994 36.000 0.00 0.00 39.86 1.28
3529 4053 6.872020 GCTAGGTGGCTTCGTTAATATAATCA 59.128 38.462 0.00 0.00 0.00 2.57
3530 4054 7.549488 GCTAGGTGGCTTCGTTAATATAATCAT 59.451 37.037 0.00 0.00 0.00 2.45
3531 4055 7.672983 AGGTGGCTTCGTTAATATAATCATG 57.327 36.000 0.00 0.00 0.00 3.07
3554 4106 9.182214 CATGGCTAGCTGGATATGTAAATTAAT 57.818 33.333 15.72 0.00 0.00 1.40
3562 4114 9.077885 GCTGGATATGTAAATTAATCAGGGAAA 57.922 33.333 0.00 0.00 0.00 3.13
3597 4149 5.048083 TGGACAAAGCATAAACATCAGTTCC 60.048 40.000 0.00 0.00 36.84 3.62
3600 4152 6.815089 ACAAAGCATAAACATCAGTTCCAAA 58.185 32.000 0.00 0.00 36.84 3.28
3605 4157 5.739161 GCATAAACATCAGTTCCAAACGATC 59.261 40.000 0.00 0.00 36.84 3.69
3606 4158 4.404507 AAACATCAGTTCCAAACGATCG 57.595 40.909 14.88 14.88 36.84 3.69
3607 4159 3.313012 ACATCAGTTCCAAACGATCGA 57.687 42.857 24.34 0.00 36.23 3.59
3608 4160 3.861840 ACATCAGTTCCAAACGATCGAT 58.138 40.909 24.34 7.21 36.23 3.59
3609 4161 4.253685 ACATCAGTTCCAAACGATCGATT 58.746 39.130 24.34 14.30 36.23 3.34
3610 4162 5.416083 ACATCAGTTCCAAACGATCGATTA 58.584 37.500 24.34 0.00 36.23 1.75
3611 4163 5.520288 ACATCAGTTCCAAACGATCGATTAG 59.480 40.000 24.34 9.87 36.23 1.73
3612 4164 3.863424 TCAGTTCCAAACGATCGATTAGC 59.137 43.478 24.34 4.36 36.23 3.09
3613 4165 3.616821 CAGTTCCAAACGATCGATTAGCA 59.383 43.478 24.34 0.00 36.23 3.49
3614 4166 3.617263 AGTTCCAAACGATCGATTAGCAC 59.383 43.478 24.34 10.14 36.23 4.40
3615 4167 3.520290 TCCAAACGATCGATTAGCACT 57.480 42.857 24.34 0.00 0.00 4.40
3616 4168 3.186909 TCCAAACGATCGATTAGCACTG 58.813 45.455 24.34 3.72 0.00 3.66
3618 4170 3.804325 CCAAACGATCGATTAGCACTGAT 59.196 43.478 24.34 0.00 0.00 2.90
3621 4173 6.346120 CCAAACGATCGATTAGCACTGATTAG 60.346 42.308 24.34 0.00 0.00 1.73
3623 4175 5.453648 ACGATCGATTAGCACTGATTAGTC 58.546 41.667 24.34 0.00 34.07 2.59
3626 4178 7.041303 ACGATCGATTAGCACTGATTAGTCTAA 60.041 37.037 24.34 10.02 34.07 2.10
3627 4179 7.269511 CGATCGATTAGCACTGATTAGTCTAAC 59.730 40.741 10.26 0.00 34.07 2.34
3634 4186 6.269315 AGCACTGATTAGTCTAACTGATTCG 58.731 40.000 0.00 0.00 34.07 3.34
3637 4189 7.463383 GCACTGATTAGTCTAACTGATTCGTTG 60.463 40.741 0.00 0.00 34.07 4.10
3639 4191 8.088981 ACTGATTAGTCTAACTGATTCGTTGTT 58.911 33.333 0.00 0.00 28.79 2.83
3682 4237 6.141211 GCGTAATATTTTGTGCTCATGTGATG 59.859 38.462 0.00 0.00 0.00 3.07
3685 4240 4.877378 ATTTTGTGCTCATGTGATGGTT 57.123 36.364 0.00 0.00 0.00 3.67
3686 4241 4.669206 TTTTGTGCTCATGTGATGGTTT 57.331 36.364 0.00 0.00 0.00 3.27
3688 4243 2.161855 TGTGCTCATGTGATGGTTTCC 58.838 47.619 0.00 0.00 0.00 3.13
3691 4246 3.194116 GTGCTCATGTGATGGTTTCCAAT 59.806 43.478 0.00 0.00 36.95 3.16
3692 4247 3.193903 TGCTCATGTGATGGTTTCCAATG 59.806 43.478 0.00 0.00 36.95 2.82
3693 4248 3.194116 GCTCATGTGATGGTTTCCAATGT 59.806 43.478 0.00 0.00 36.95 2.71
3694 4249 4.398988 GCTCATGTGATGGTTTCCAATGTA 59.601 41.667 0.00 0.00 36.95 2.29
3695 4250 5.068198 GCTCATGTGATGGTTTCCAATGTAT 59.932 40.000 0.00 0.00 36.95 2.29
3696 4251 6.453926 TCATGTGATGGTTTCCAATGTATG 57.546 37.500 0.00 0.00 36.95 2.39
3697 4252 5.951148 TCATGTGATGGTTTCCAATGTATGT 59.049 36.000 0.00 0.00 36.95 2.29
3698 4253 7.115414 TCATGTGATGGTTTCCAATGTATGTA 58.885 34.615 0.00 0.00 36.95 2.29
3699 4254 7.779326 TCATGTGATGGTTTCCAATGTATGTAT 59.221 33.333 0.00 0.00 36.95 2.29
3700 4255 7.566760 TGTGATGGTTTCCAATGTATGTATC 57.433 36.000 0.00 0.00 36.95 2.24
3701 4256 6.259829 TGTGATGGTTTCCAATGTATGTATCG 59.740 38.462 0.00 0.00 36.95 2.92
3776 4333 1.303561 ACGGAGCCAGGTACGTACA 60.304 57.895 26.02 0.00 37.85 2.90
3782 4339 0.316204 GCCAGGTACGTACACACACT 59.684 55.000 26.02 11.36 0.00 3.55
3794 4351 0.601558 CACACACTAGCTACCCGTGT 59.398 55.000 10.58 10.58 42.14 4.49
3797 4354 1.183030 ACACTAGCTACCCGTGTGCA 61.183 55.000 14.51 0.00 40.11 4.57
3798 4355 0.175760 CACTAGCTACCCGTGTGCAT 59.824 55.000 0.00 0.00 0.00 3.96
3801 4358 2.622903 TAGCTACCCGTGTGCATCGC 62.623 60.000 8.40 0.16 0.00 4.58
3806 4363 4.428922 CCGTGTGCATCGCGTGTG 62.429 66.667 5.77 8.00 46.91 3.82
3807 4364 4.428922 CGTGTGCATCGCGTGTGG 62.429 66.667 5.77 0.00 43.87 4.17
3809 4366 4.617520 TGTGCATCGCGTGTGGGT 62.618 61.111 5.77 0.00 0.00 4.51
3810 4367 4.088762 GTGCATCGCGTGTGGGTG 62.089 66.667 5.77 0.00 0.00 4.61
3811 4368 4.617520 TGCATCGCGTGTGGGTGT 62.618 61.111 5.77 0.00 0.00 4.16
3812 4369 4.088762 GCATCGCGTGTGGGTGTG 62.089 66.667 5.77 0.00 0.00 3.82
3813 4370 3.422303 CATCGCGTGTGGGTGTGG 61.422 66.667 5.77 0.00 0.00 4.17
3815 4372 3.469863 ATCGCGTGTGGGTGTGGTT 62.470 57.895 5.77 0.00 0.00 3.67
3816 4373 2.102109 ATCGCGTGTGGGTGTGGTTA 62.102 55.000 5.77 0.00 0.00 2.85
3817 4374 1.888172 CGCGTGTGGGTGTGGTTAA 60.888 57.895 0.00 0.00 0.00 2.01
3818 4375 1.231958 CGCGTGTGGGTGTGGTTAAT 61.232 55.000 0.00 0.00 0.00 1.40
3819 4376 0.239879 GCGTGTGGGTGTGGTTAATG 59.760 55.000 0.00 0.00 0.00 1.90
3846 4405 1.133025 CTTGAATCGGTTGCCATGTCC 59.867 52.381 0.00 0.00 0.00 4.02
3898 4457 3.438434 GGACAGAGATTCTTGGTTCTTGC 59.562 47.826 0.00 0.00 0.00 4.01
3902 4461 6.299141 ACAGAGATTCTTGGTTCTTGCTTAA 58.701 36.000 0.00 0.00 0.00 1.85
3928 4487 2.739932 GCACCTCTCGCTACAATGACAT 60.740 50.000 0.00 0.00 0.00 3.06
3929 4488 2.862536 CACCTCTCGCTACAATGACATG 59.137 50.000 0.00 0.00 0.00 3.21
3930 4489 2.497675 ACCTCTCGCTACAATGACATGT 59.502 45.455 0.00 0.00 37.32 3.21
3931 4490 3.699538 ACCTCTCGCTACAATGACATGTA 59.300 43.478 0.00 0.00 34.75 2.29
3932 4491 4.159693 ACCTCTCGCTACAATGACATGTAA 59.840 41.667 0.00 0.00 35.48 2.41
3933 4492 5.109210 CCTCTCGCTACAATGACATGTAAA 58.891 41.667 0.00 0.00 35.48 2.01
3934 4493 5.755375 CCTCTCGCTACAATGACATGTAAAT 59.245 40.000 0.00 0.00 35.48 1.40
3935 4494 6.292542 CCTCTCGCTACAATGACATGTAAATG 60.293 42.308 0.00 0.00 35.48 2.32
3936 4495 5.523552 TCTCGCTACAATGACATGTAAATGG 59.476 40.000 0.00 0.00 35.48 3.16
3937 4496 5.182487 TCGCTACAATGACATGTAAATGGT 58.818 37.500 0.00 2.16 35.48 3.55
3938 4497 5.064579 TCGCTACAATGACATGTAAATGGTG 59.935 40.000 0.00 0.00 35.48 4.17
3939 4498 5.163764 CGCTACAATGACATGTAAATGGTGT 60.164 40.000 0.00 1.33 35.48 4.16
3940 4499 6.029607 GCTACAATGACATGTAAATGGTGTG 58.970 40.000 0.00 0.00 35.48 3.82
3941 4500 6.349280 GCTACAATGACATGTAAATGGTGTGT 60.349 38.462 0.00 0.29 35.48 3.72
4255 4817 2.666862 TCAACATCGCCGGCGTTT 60.667 55.556 44.16 31.83 40.74 3.60
4270 4832 2.817834 TTTCCGCGCGAATGGAGG 60.818 61.111 34.63 13.06 35.26 4.30
4308 4870 2.430367 GGCCACCACCTCGACTTT 59.570 61.111 0.00 0.00 0.00 2.66
4320 4882 1.727022 CGACTTTGACGCGTACGGT 60.727 57.895 13.97 13.08 46.04 4.83
4344 4906 3.878667 GGCCAGGGAGGATTCGGG 61.879 72.222 0.00 0.00 41.22 5.14
4592 5154 4.994471 CGTGCAGGACCAGCAGCA 62.994 66.667 12.49 4.32 43.63 4.41
4705 5282 4.227134 CCATCCACGGCGAGGAGG 62.227 72.222 28.69 27.87 38.83 4.30
4706 5283 4.899239 CATCCACGGCGAGGAGGC 62.899 72.222 28.69 0.00 38.83 4.70
4756 5340 1.080538 GAGGGGTGGACCTGTACCT 59.919 63.158 0.00 0.00 42.10 3.08
4758 5342 2.669240 GGGTGGACCTGTACCTGC 59.331 66.667 0.00 0.00 37.15 4.85
4759 5343 2.221299 GGGTGGACCTGTACCTGCA 61.221 63.158 0.00 0.00 37.15 4.41
4760 5344 1.003718 GGTGGACCTGTACCTGCAC 60.004 63.158 0.00 0.00 34.11 4.57
4761 5345 1.374252 GTGGACCTGTACCTGCACG 60.374 63.158 0.00 0.00 0.00 5.34
4763 5347 2.342279 GACCTGTACCTGCACGCA 59.658 61.111 0.00 0.00 0.00 5.24
4764 5348 2.027625 GACCTGTACCTGCACGCAC 61.028 63.158 0.00 0.00 0.00 5.34
4767 5351 4.293648 TGTACCTGCACGCACGCT 62.294 61.111 0.00 0.00 0.00 5.07
4837 5429 1.134936 TGTTGCCTGATACGTACGCAT 60.135 47.619 16.72 8.21 0.00 4.73
4841 5433 1.666311 GCCTGATACGTACGCATCTCC 60.666 57.143 24.79 12.06 0.00 3.71
4842 5434 1.880675 CCTGATACGTACGCATCTCCT 59.119 52.381 24.79 3.98 0.00 3.69
4844 5436 2.548480 CTGATACGTACGCATCTCCTCA 59.452 50.000 24.79 8.87 0.00 3.86
4845 5437 3.146847 TGATACGTACGCATCTCCTCAT 58.853 45.455 24.79 1.88 0.00 2.90
4846 5438 3.058224 TGATACGTACGCATCTCCTCATG 60.058 47.826 24.79 0.00 0.00 3.07
4847 5439 1.103803 ACGTACGCATCTCCTCATGT 58.896 50.000 16.72 0.00 0.00 3.21
4848 5440 1.476891 ACGTACGCATCTCCTCATGTT 59.523 47.619 16.72 0.00 0.00 2.71
4850 5442 2.205074 GTACGCATCTCCTCATGTTGG 58.795 52.381 0.00 0.00 0.00 3.77
4853 5445 0.745845 GCATCTCCTCATGTTGGCGT 60.746 55.000 0.00 0.00 0.00 5.68
4854 5446 1.012086 CATCTCCTCATGTTGGCGTG 58.988 55.000 0.00 0.00 0.00 5.34
4906 5509 1.077787 CTGCCTGCCGGAATGGTAA 60.078 57.895 5.05 0.00 41.21 2.85
4930 5533 7.308782 AGTTGCACATTAATTAGAGTACTGC 57.691 36.000 0.00 0.00 0.00 4.40
4932 5535 5.416083 TGCACATTAATTAGAGTACTGCGT 58.584 37.500 0.00 0.00 0.00 5.24
4934 5537 7.036829 TGCACATTAATTAGAGTACTGCGTAA 58.963 34.615 0.00 0.00 0.00 3.18
4945 5548 4.421952 TGCGTAACAGAACGTGCA 57.578 50.000 0.00 0.00 44.64 4.57
4946 5549 1.928653 TGCGTAACAGAACGTGCAC 59.071 52.632 6.82 6.82 44.64 4.57
4947 5550 1.203313 GCGTAACAGAACGTGCACC 59.797 57.895 12.15 0.00 44.64 5.01
4948 5551 1.492319 GCGTAACAGAACGTGCACCA 61.492 55.000 12.15 0.00 44.64 4.17
4949 5552 0.506932 CGTAACAGAACGTGCACCAG 59.493 55.000 12.15 0.00 38.07 4.00
4950 5553 0.234884 GTAACAGAACGTGCACCAGC 59.765 55.000 12.15 0.00 42.57 4.85
4961 5564 2.046023 CACCAGCAGGGCGATGAA 60.046 61.111 0.00 0.00 42.05 2.57
4982 5585 4.133796 GTACGTAGCCGGCCGGTT 62.134 66.667 42.53 39.46 38.78 4.44
4983 5586 4.132441 TACGTAGCCGGCCGGTTG 62.132 66.667 42.53 30.28 38.78 3.77
4986 5589 4.151582 GTAGCCGGCCGGTTGCTA 62.152 66.667 42.53 32.93 40.92 3.49
4987 5590 4.151582 TAGCCGGCCGGTTGCTAC 62.152 66.667 42.53 26.10 40.92 3.58
4990 5593 4.077184 CCGGCCGGTTGCTACTGA 62.077 66.667 36.64 0.00 40.92 3.41
4991 5594 2.186903 CGGCCGGTTGCTACTGAT 59.813 61.111 20.10 0.00 40.92 2.90
4992 5595 1.883084 CGGCCGGTTGCTACTGATC 60.883 63.158 20.10 0.29 40.92 2.92
4993 5596 1.883084 GGCCGGTTGCTACTGATCG 60.883 63.158 8.82 0.00 40.92 3.69
4994 5597 1.153628 GCCGGTTGCTACTGATCGT 60.154 57.895 8.82 0.00 36.87 3.73
4995 5598 0.101759 GCCGGTTGCTACTGATCGTA 59.898 55.000 8.82 0.00 36.87 3.43
5018 5621 2.250939 CGTGCAGTTTGGAAGCGGA 61.251 57.895 0.00 0.00 0.00 5.54
5019 5622 1.576421 GTGCAGTTTGGAAGCGGAG 59.424 57.895 0.00 0.00 0.00 4.63
5060 5663 3.626680 ATGTATCGATCGGCCGGCG 62.627 63.158 27.83 27.69 0.00 6.46
5109 5713 7.171678 GGAGATTCGCAGCTTATTATTTGTAGT 59.828 37.037 0.00 0.00 0.00 2.73
5249 5853 7.573968 ACTCATGCGATCATATATAGCTACA 57.426 36.000 0.00 0.00 0.00 2.74
5277 5881 2.884639 AGAGTGTGCGTTTGGCTTTAAT 59.115 40.909 0.00 0.00 44.05 1.40
5287 5891 6.144724 TGCGTTTGGCTTTAATATTTGTTCAC 59.855 34.615 0.00 0.00 44.05 3.18
5315 5920 8.700439 AAGAGTGTACTTATATCTTCCCTCTC 57.300 38.462 0.00 0.00 0.00 3.20
5318 5923 7.288560 AGTGTACTTATATCTTCCCTCTCGAA 58.711 38.462 0.00 0.00 0.00 3.71
5323 5928 7.747690 ACTTATATCTTCCCTCTCGAACTAGA 58.252 38.462 0.00 0.00 0.00 2.43
5328 5933 5.078256 TCTTCCCTCTCGAACTAGACTTTT 58.922 41.667 0.00 0.00 0.00 2.27
5335 5940 1.607251 CGAACTAGACTTTTGCCCCGT 60.607 52.381 0.00 0.00 0.00 5.28
5373 5978 2.843730 ACATCCATACAGCCAAGTACCA 59.156 45.455 0.00 0.00 0.00 3.25
5374 5979 3.265737 ACATCCATACAGCCAAGTACCAA 59.734 43.478 0.00 0.00 0.00 3.67
5375 5980 4.079787 ACATCCATACAGCCAAGTACCAAT 60.080 41.667 0.00 0.00 0.00 3.16
5376 5981 4.150897 TCCATACAGCCAAGTACCAATC 57.849 45.455 0.00 0.00 0.00 2.67
5377 5982 3.780294 TCCATACAGCCAAGTACCAATCT 59.220 43.478 0.00 0.00 0.00 2.40
5378 5983 4.130118 CCATACAGCCAAGTACCAATCTC 58.870 47.826 0.00 0.00 0.00 2.75
5393 5998 7.868415 AGTACCAATCTCGATAGCAAATAAGAC 59.132 37.037 0.00 0.00 0.00 3.01
5420 6025 2.028936 CCACAACACAATCACGCCA 58.971 52.632 0.00 0.00 0.00 5.69
5423 6028 2.118683 CACAACACAATCACGCCAAAG 58.881 47.619 0.00 0.00 0.00 2.77
5431 6036 4.207019 CACAATCACGCCAAAGAAAGAAAC 59.793 41.667 0.00 0.00 0.00 2.78
5438 6043 4.862574 ACGCCAAAGAAAGAAACAAGAAAC 59.137 37.500 0.00 0.00 0.00 2.78
5471 6076 1.544759 CCGGGTGGCAAACTAAGAAGT 60.545 52.381 0.00 0.00 37.65 3.01
5479 6084 3.363128 GGCAAACTAAGAAGTCGTCGTAC 59.637 47.826 0.00 0.00 33.75 3.67
5526 6131 1.617947 GGAGAGCGTCCATGGGAAGT 61.618 60.000 13.02 0.00 46.10 3.01
5603 6208 4.676924 GGCAAGAAATTTGAAGAACGAGTG 59.323 41.667 0.00 0.00 0.00 3.51
5615 6220 1.333619 GAACGAGTGAAAAGCTTGCCA 59.666 47.619 0.00 0.00 0.00 4.92
5617 6222 0.662619 CGAGTGAAAAGCTTGCCACA 59.337 50.000 24.46 11.03 32.35 4.17
5625 6230 3.439857 AAAGCTTGCCACAGGAAGATA 57.560 42.857 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 57 1.337703 AGTGTGGAAACGTACGTGCTA 59.662 47.619 23.57 12.41 0.00 3.49
51 58 0.103572 AGTGTGGAAACGTACGTGCT 59.896 50.000 23.57 12.55 0.00 4.40
52 59 1.717645 CTAGTGTGGAAACGTACGTGC 59.282 52.381 23.57 16.71 0.00 5.34
53 60 1.717645 GCTAGTGTGGAAACGTACGTG 59.282 52.381 23.57 6.17 0.00 4.49
64 71 6.017934 GGATGTATGTGTATTTGCTAGTGTGG 60.018 42.308 0.00 0.00 0.00 4.17
78 85 9.857656 ATCTCAAAAATATCTGGATGTATGTGT 57.142 29.630 0.00 0.00 0.00 3.72
122 129 2.362397 TCTCTCTCTCTCTCTCTCTCGC 59.638 54.545 0.00 0.00 0.00 5.03
204 221 2.391389 CCGTCAAGCTTTCGCCTCC 61.391 63.158 13.30 0.00 36.60 4.30
381 400 2.635915 TCTTAAAGAAGCCAACCGGAGA 59.364 45.455 9.46 0.00 32.21 3.71
415 434 4.883354 GCAGCGGATTGGGGAGGG 62.883 72.222 0.00 0.00 0.00 4.30
460 479 2.660236 GCAAGAATCTCGCTTTGCTTTG 59.340 45.455 1.16 0.00 0.00 2.77
461 480 2.555757 AGCAAGAATCTCGCTTTGCTTT 59.444 40.909 4.86 0.00 30.87 3.51
462 481 2.095364 CAGCAAGAATCTCGCTTTGCTT 60.095 45.455 7.75 0.00 32.48 3.91
482 503 2.108425 AGACTACCTCACCTCAGTCACA 59.892 50.000 3.67 0.00 39.90 3.58
483 504 2.490115 CAGACTACCTCACCTCAGTCAC 59.510 54.545 3.67 0.00 39.90 3.67
484 505 2.555448 CCAGACTACCTCACCTCAGTCA 60.555 54.545 3.67 0.00 39.90 3.41
485 506 2.096248 CCAGACTACCTCACCTCAGTC 58.904 57.143 0.00 0.00 38.13 3.51
486 507 1.429687 ACCAGACTACCTCACCTCAGT 59.570 52.381 0.00 0.00 0.00 3.41
488 509 2.648304 ACTACCAGACTACCTCACCTCA 59.352 50.000 0.00 0.00 0.00 3.86
489 510 3.018149 CACTACCAGACTACCTCACCTC 58.982 54.545 0.00 0.00 0.00 3.85
490 511 2.379226 ACACTACCAGACTACCTCACCT 59.621 50.000 0.00 0.00 0.00 4.00
491 512 2.492484 CACACTACCAGACTACCTCACC 59.508 54.545 0.00 0.00 0.00 4.02
493 514 3.801307 TCACACTACCAGACTACCTCA 57.199 47.619 0.00 0.00 0.00 3.86
495 516 4.223032 CCAAATCACACTACCAGACTACCT 59.777 45.833 0.00 0.00 0.00 3.08
496 517 4.020485 ACCAAATCACACTACCAGACTACC 60.020 45.833 0.00 0.00 0.00 3.18
497 518 5.148651 ACCAAATCACACTACCAGACTAC 57.851 43.478 0.00 0.00 0.00 2.73
591 787 1.801178 GAGGAAAGCAACGAGGTCAAG 59.199 52.381 0.00 0.00 0.00 3.02
652 848 1.601663 GCATCACACGGAGCTAGCTAG 60.602 57.143 19.38 16.84 0.00 3.42
653 849 0.385751 GCATCACACGGAGCTAGCTA 59.614 55.000 19.38 0.00 0.00 3.32
654 850 1.142748 GCATCACACGGAGCTAGCT 59.857 57.895 19.45 19.45 0.00 3.32
663 859 0.666274 ACCACTACACGCATCACACG 60.666 55.000 0.00 0.00 0.00 4.49
664 860 2.259618 CTACCACTACACGCATCACAC 58.740 52.381 0.00 0.00 0.00 3.82
672 868 2.745821 TGCTCACTACTACCACTACACG 59.254 50.000 0.00 0.00 0.00 4.49
680 876 4.402793 TGAGGAGAAATGCTCACTACTACC 59.597 45.833 0.00 0.00 45.81 3.18
683 879 4.093011 ACTGAGGAGAAATGCTCACTACT 58.907 43.478 0.00 0.00 45.81 2.57
684 880 4.429108 GACTGAGGAGAAATGCTCACTAC 58.571 47.826 0.00 0.00 45.81 2.73
685 881 3.449018 GGACTGAGGAGAAATGCTCACTA 59.551 47.826 0.00 0.00 45.81 2.74
686 882 2.235898 GGACTGAGGAGAAATGCTCACT 59.764 50.000 0.00 0.00 45.81 3.41
687 883 2.235898 AGGACTGAGGAGAAATGCTCAC 59.764 50.000 0.00 0.00 45.81 3.51
688 884 2.544721 AGGACTGAGGAGAAATGCTCA 58.455 47.619 0.00 0.00 45.81 4.26
689 885 3.492482 GCTAGGACTGAGGAGAAATGCTC 60.492 52.174 0.00 0.00 43.17 4.26
690 886 2.433970 GCTAGGACTGAGGAGAAATGCT 59.566 50.000 0.00 0.00 0.00 3.79
691 887 2.433970 AGCTAGGACTGAGGAGAAATGC 59.566 50.000 0.00 0.00 0.00 3.56
692 888 5.596361 TCTTAGCTAGGACTGAGGAGAAATG 59.404 44.000 0.59 0.00 0.00 2.32
741 937 3.057876 CACTCCTATCGCCACTGATCTAC 60.058 52.174 0.00 0.00 0.00 2.59
779 975 0.459411 GAGAAGAAGAGCAGACGGCC 60.459 60.000 0.00 0.00 46.50 6.13
788 985 6.237154 ACCAAATCTTTCCAGAGAAGAAGAG 58.763 40.000 0.00 0.00 36.77 2.85
793 990 4.319177 ACGACCAAATCTTTCCAGAGAAG 58.681 43.478 0.00 0.00 32.35 2.85
877 1093 0.249573 CAAAAGGGCAGCAACACCAG 60.250 55.000 0.00 0.00 0.00 4.00
885 1101 0.668535 AAACGAGACAAAAGGGCAGC 59.331 50.000 0.00 0.00 0.00 5.25
910 1126 0.529378 CCAAACCAATCAGCAGAGCC 59.471 55.000 0.00 0.00 0.00 4.70
936 1152 4.880696 AGCTAGATCCAACTGAAGCAAATC 59.119 41.667 0.00 0.00 32.42 2.17
951 1167 1.501582 AAGGTCCACCCAGCTAGATC 58.498 55.000 0.00 0.00 36.42 2.75
955 1174 0.404040 CCAAAAGGTCCACCCAGCTA 59.596 55.000 0.00 0.00 36.42 3.32
983 1202 1.831736 CCATCCTCCCGAGTTACACTT 59.168 52.381 0.00 0.00 0.00 3.16
984 1203 1.486211 CCATCCTCCCGAGTTACACT 58.514 55.000 0.00 0.00 0.00 3.55
985 1204 0.179081 GCCATCCTCCCGAGTTACAC 60.179 60.000 0.00 0.00 0.00 2.90
986 1205 1.672854 CGCCATCCTCCCGAGTTACA 61.673 60.000 0.00 0.00 0.00 2.41
987 1206 1.067582 CGCCATCCTCCCGAGTTAC 59.932 63.158 0.00 0.00 0.00 2.50
988 1207 2.792947 GCGCCATCCTCCCGAGTTA 61.793 63.158 0.00 0.00 0.00 2.24
1182 1401 2.809174 TCGCAGTGAACATCCGCG 60.809 61.111 0.00 0.00 46.92 6.46
1223 1442 1.372087 GAAGAAGCGCATGGTGGAGG 61.372 60.000 11.47 0.00 0.00 4.30
1300 1519 2.280797 GCACAGCGACAGGGACAA 60.281 61.111 0.00 0.00 0.00 3.18
1770 2025 3.052082 CTGCTTGTGGTGGAGCCG 61.052 66.667 0.00 0.00 41.21 5.52
1805 2062 1.952367 GCCACTGCCTGCTAATTGAGT 60.952 52.381 0.00 0.00 0.00 3.41
1806 2063 0.737219 GCCACTGCCTGCTAATTGAG 59.263 55.000 0.00 0.00 0.00 3.02
1807 2064 0.038021 TGCCACTGCCTGCTAATTGA 59.962 50.000 0.00 0.00 36.33 2.57
1808 2065 0.171903 GTGCCACTGCCTGCTAATTG 59.828 55.000 0.00 0.00 36.33 2.32
1875 2137 1.078637 GCTACCACGACCTTTCCCC 60.079 63.158 0.00 0.00 0.00 4.81
1888 2150 2.308968 CTGCTCCTGCTCCTGCTACC 62.309 65.000 0.00 0.00 40.48 3.18
1891 2153 3.400928 CCTGCTCCTGCTCCTGCT 61.401 66.667 0.00 0.00 40.48 4.24
1905 2167 1.747355 GCAACCATGATGGAACTCCTG 59.253 52.381 20.11 6.31 40.96 3.86
1906 2168 1.341383 GGCAACCATGATGGAACTCCT 60.341 52.381 20.11 0.00 40.96 3.69
1907 2169 1.106285 GGCAACCATGATGGAACTCC 58.894 55.000 20.11 9.48 40.96 3.85
1908 2170 0.734889 CGGCAACCATGATGGAACTC 59.265 55.000 20.11 4.00 40.96 3.01
1909 2171 0.680921 CCGGCAACCATGATGGAACT 60.681 55.000 20.11 0.00 40.96 3.01
1910 2172 0.679640 TCCGGCAACCATGATGGAAC 60.680 55.000 20.11 6.53 40.96 3.62
1965 2237 2.391389 CCGAAAGCGAAGGGTGAGC 61.391 63.158 0.00 0.00 40.82 4.26
1967 2239 0.107081 TTTCCGAAAGCGAAGGGTGA 59.893 50.000 0.00 0.00 40.82 4.02
2080 2352 2.352032 GGTGTGGGAGAGACGAGGG 61.352 68.421 0.00 0.00 0.00 4.30
2090 2364 3.174987 CAGGGTGTGGGTGTGGGA 61.175 66.667 0.00 0.00 0.00 4.37
2112 2386 2.125391 TCGCAGAGTCATGGCAGC 60.125 61.111 0.00 0.00 0.00 5.25
2154 2428 2.989173 ATTGGTGGTGCTGCACTGCT 62.989 55.000 29.54 8.51 34.40 4.24
2172 2446 0.988145 TCCGAGGGAGATGGGCAAAT 60.988 55.000 0.00 0.00 0.00 2.32
2306 2584 1.889105 AGTGCTGTGACTTGTGCGG 60.889 57.895 0.00 0.00 0.00 5.69
2327 2605 1.159285 GGTAACGGTTAACTGCCACC 58.841 55.000 14.52 16.39 0.00 4.61
2328 2606 1.159285 GGGTAACGGTTAACTGCCAC 58.841 55.000 14.52 11.62 37.60 5.01
2388 2666 6.993786 TCGATTGACCAATGCAGTAAATTA 57.006 33.333 0.00 0.00 0.00 1.40
2405 2683 2.030457 GGGTAACTTGTGCGATCGATTG 59.970 50.000 21.57 8.40 0.00 2.67
2408 2686 0.457166 CGGGTAACTTGTGCGATCGA 60.457 55.000 21.57 0.59 0.00 3.59
2409 2687 1.995991 CGGGTAACTTGTGCGATCG 59.004 57.895 11.69 11.69 0.00 3.69
2439 2718 4.212636 GTGAATTACACGGCAGTAACAACT 59.787 41.667 2.15 0.00 39.78 3.16
2440 2719 4.460505 GTGAATTACACGGCAGTAACAAC 58.539 43.478 2.15 0.00 39.78 3.32
2474 2753 7.701539 ACACCAATGCAGTAAATTAAGATGA 57.298 32.000 0.00 0.00 0.00 2.92
2518 2797 3.890527 GTACCTCCTGTACCTCCGA 57.109 57.895 0.00 0.00 43.41 4.55
2596 2875 3.830192 ACCGCCGTGTATCCCGAC 61.830 66.667 0.00 0.00 0.00 4.79
2779 3058 1.577328 CGTTCTGGTGCATCGCCTTT 61.577 55.000 0.00 0.00 34.70 3.11
2866 3145 2.688666 AAGAGCCATGCCCGGAGA 60.689 61.111 0.73 0.00 0.00 3.71
2917 3196 7.069877 TGTAAAGATGTAAGTACTGGTTGGT 57.930 36.000 0.00 0.00 0.00 3.67
2919 3198 7.414098 GGCATGTAAAGATGTAAGTACTGGTTG 60.414 40.741 0.00 0.00 0.00 3.77
2953 3285 4.880120 AGCTGATGACATAACTGTTGGATG 59.120 41.667 2.69 2.60 35.14 3.51
3095 3518 6.039493 TGTGCTAGCTAGTCCTTAACACTATC 59.961 42.308 21.62 0.89 0.00 2.08
3129 3552 7.069877 TCCACTAAGAAAACTAACTGGCTAA 57.930 36.000 0.00 0.00 0.00 3.09
3133 3556 7.803279 AAACTCCACTAAGAAAACTAACTGG 57.197 36.000 0.00 0.00 0.00 4.00
3149 3653 6.635030 AACCTTGTATGAAGAAAACTCCAC 57.365 37.500 0.00 0.00 0.00 4.02
3268 3779 8.994429 GCTTGACAGCTTGAGTATATATATGT 57.006 34.615 5.44 0.00 43.51 2.29
3319 3832 3.242511 CGTAAGGATCGATCGTACACACA 60.243 47.826 25.45 0.00 0.00 3.72
3320 3833 3.286576 CGTAAGGATCGATCGTACACAC 58.713 50.000 25.45 17.90 0.00 3.82
3321 3834 3.597377 CGTAAGGATCGATCGTACACA 57.403 47.619 25.45 11.00 0.00 3.72
3458 3978 1.433053 TTTGTGCTTACGTGCGTGCT 61.433 50.000 7.55 0.00 35.36 4.40
3516 4040 7.041721 TCCAGCTAGCCATGATTATATTAACG 58.958 38.462 12.13 0.00 0.00 3.18
3523 4047 6.572182 ACATATCCAGCTAGCCATGATTAT 57.428 37.500 12.13 2.54 0.00 1.28
3524 4048 7.494922 TTACATATCCAGCTAGCCATGATTA 57.505 36.000 12.13 0.25 0.00 1.75
3525 4049 4.923516 ACATATCCAGCTAGCCATGATT 57.076 40.909 12.13 0.00 0.00 2.57
3526 4050 6.378661 TTTACATATCCAGCTAGCCATGAT 57.621 37.500 12.13 13.12 0.00 2.45
3527 4051 5.823861 TTTACATATCCAGCTAGCCATGA 57.176 39.130 12.13 5.98 0.00 3.07
3529 4053 9.401058 GATTAATTTACATATCCAGCTAGCCAT 57.599 33.333 12.13 3.81 0.00 4.40
3530 4054 8.382405 TGATTAATTTACATATCCAGCTAGCCA 58.618 33.333 12.13 0.00 0.00 4.75
3531 4055 8.792830 TGATTAATTTACATATCCAGCTAGCC 57.207 34.615 12.13 0.00 0.00 3.93
3554 4106 3.117701 TCCACTCAAACACATTTCCCTGA 60.118 43.478 0.00 0.00 0.00 3.86
3562 4114 3.023119 TGCTTTGTCCACTCAAACACAT 58.977 40.909 0.00 0.00 34.30 3.21
3597 4149 5.395325 AATCAGTGCTAATCGATCGTTTG 57.605 39.130 19.17 12.60 0.00 2.93
3600 4152 5.239744 AGACTAATCAGTGCTAATCGATCGT 59.760 40.000 15.94 0.00 34.21 3.73
3605 4157 7.418408 TCAGTTAGACTAATCAGTGCTAATCG 58.582 38.462 0.00 0.00 34.21 3.34
3606 4158 9.757227 AATCAGTTAGACTAATCAGTGCTAATC 57.243 33.333 0.00 0.00 34.21 1.75
3607 4159 9.757227 GAATCAGTTAGACTAATCAGTGCTAAT 57.243 33.333 0.00 0.00 34.21 1.73
3608 4160 7.915923 CGAATCAGTTAGACTAATCAGTGCTAA 59.084 37.037 0.00 0.00 34.21 3.09
3609 4161 7.067129 ACGAATCAGTTAGACTAATCAGTGCTA 59.933 37.037 0.00 0.00 34.21 3.49
3610 4162 6.127591 ACGAATCAGTTAGACTAATCAGTGCT 60.128 38.462 0.00 0.00 34.21 4.40
3611 4163 6.037098 ACGAATCAGTTAGACTAATCAGTGC 58.963 40.000 0.00 0.00 34.21 4.40
3612 4164 7.542477 ACAACGAATCAGTTAGACTAATCAGTG 59.458 37.037 0.00 0.00 31.60 3.66
3613 4165 7.603651 ACAACGAATCAGTTAGACTAATCAGT 58.396 34.615 0.00 0.00 33.16 3.41
3614 4166 8.467402 AACAACGAATCAGTTAGACTAATCAG 57.533 34.615 0.00 0.00 32.35 2.90
3615 4167 8.827177 AAACAACGAATCAGTTAGACTAATCA 57.173 30.769 0.00 0.00 32.35 2.57
3618 4170 9.100554 TGAAAAACAACGAATCAGTTAGACTAA 57.899 29.630 0.00 0.00 32.35 2.24
3621 4173 9.530129 CTATGAAAAACAACGAATCAGTTAGAC 57.470 33.333 0.00 0.00 32.35 2.59
3623 4175 7.214449 CGCTATGAAAAACAACGAATCAGTTAG 59.786 37.037 0.00 0.00 32.35 2.34
3626 4178 5.382303 CGCTATGAAAAACAACGAATCAGT 58.618 37.500 0.00 0.00 0.00 3.41
3627 4179 4.260656 GCGCTATGAAAAACAACGAATCAG 59.739 41.667 0.00 0.00 0.00 2.90
3634 4186 3.623066 GCATGCGCTATGAAAAACAAC 57.377 42.857 19.56 0.89 39.21 3.32
3657 4212 5.568482 TCACATGAGCACAAAATATTACGC 58.432 37.500 0.00 0.00 0.00 4.42
3663 4218 5.981088 AACCATCACATGAGCACAAAATA 57.019 34.783 0.00 0.00 0.00 1.40
3682 4237 4.334203 TGCACGATACATACATTGGAAACC 59.666 41.667 0.00 0.00 0.00 3.27
3685 4240 4.126437 CCTGCACGATACATACATTGGAA 58.874 43.478 0.00 0.00 0.00 3.53
3686 4241 3.133901 ACCTGCACGATACATACATTGGA 59.866 43.478 0.00 0.00 0.00 3.53
3688 4243 5.348724 GGATACCTGCACGATACATACATTG 59.651 44.000 0.00 0.00 0.00 2.82
3691 4246 3.057806 CGGATACCTGCACGATACATACA 60.058 47.826 0.00 0.00 0.00 2.29
3692 4247 3.189910 TCGGATACCTGCACGATACATAC 59.810 47.826 0.00 0.00 0.00 2.39
3693 4248 3.414269 TCGGATACCTGCACGATACATA 58.586 45.455 0.00 0.00 0.00 2.29
3694 4249 2.229062 CTCGGATACCTGCACGATACAT 59.771 50.000 0.00 0.00 34.60 2.29
3695 4250 1.607148 CTCGGATACCTGCACGATACA 59.393 52.381 0.00 0.00 34.60 2.29
3696 4251 1.666311 GCTCGGATACCTGCACGATAC 60.666 57.143 0.00 0.00 34.60 2.24
3697 4252 0.596577 GCTCGGATACCTGCACGATA 59.403 55.000 0.00 0.00 34.60 2.92
3698 4253 1.364171 GCTCGGATACCTGCACGAT 59.636 57.895 0.00 0.00 34.60 3.73
3699 4254 2.805546 GCTCGGATACCTGCACGA 59.194 61.111 0.00 0.00 0.00 4.35
3700 4255 2.655364 CGCTCGGATACCTGCACG 60.655 66.667 0.00 0.00 0.00 5.34
3701 4256 1.589196 GTCGCTCGGATACCTGCAC 60.589 63.158 0.00 0.00 0.00 4.57
3776 4333 3.047039 ACACGGGTAGCTAGTGTGT 57.953 52.632 20.00 15.30 45.99 3.72
3782 4339 1.435925 CGATGCACACGGGTAGCTA 59.564 57.895 12.34 0.00 0.00 3.32
3794 4351 4.617520 ACACCCACACGCGATGCA 62.618 61.111 15.93 0.00 0.00 3.96
3797 4354 2.102109 TAACCACACCCACACGCGAT 62.102 55.000 15.93 0.00 0.00 4.58
3798 4355 2.307611 TTAACCACACCCACACGCGA 62.308 55.000 15.93 0.00 0.00 5.87
3801 4358 0.878416 CCATTAACCACACCCACACG 59.122 55.000 0.00 0.00 0.00 4.49
3805 4362 1.495148 TGTGACCATTAACCACACCCA 59.505 47.619 0.00 0.00 36.07 4.51
3806 4363 2.279935 TGTGACCATTAACCACACCC 57.720 50.000 0.00 0.00 36.07 4.61
3809 4366 4.157849 TCAAGTGTGACCATTAACCACA 57.842 40.909 0.00 0.00 38.34 4.17
3810 4367 5.616866 CGATTCAAGTGTGACCATTAACCAC 60.617 44.000 0.00 0.00 31.90 4.16
3811 4368 4.454161 CGATTCAAGTGTGACCATTAACCA 59.546 41.667 0.00 0.00 31.90 3.67
3812 4369 4.142687 CCGATTCAAGTGTGACCATTAACC 60.143 45.833 0.00 0.00 31.90 2.85
3813 4370 4.454504 ACCGATTCAAGTGTGACCATTAAC 59.545 41.667 0.00 0.00 31.90 2.01
3815 4372 4.280436 ACCGATTCAAGTGTGACCATTA 57.720 40.909 0.00 0.00 31.90 1.90
3816 4373 3.140325 ACCGATTCAAGTGTGACCATT 57.860 42.857 0.00 0.00 31.90 3.16
3817 4374 2.813754 CAACCGATTCAAGTGTGACCAT 59.186 45.455 0.00 0.00 31.90 3.55
3818 4375 2.217750 CAACCGATTCAAGTGTGACCA 58.782 47.619 0.00 0.00 31.90 4.02
3819 4376 1.069227 GCAACCGATTCAAGTGTGACC 60.069 52.381 0.00 0.00 31.90 4.02
3898 4457 2.417719 AGCGAGAGGTGCAAGTTTAAG 58.582 47.619 0.00 0.00 42.35 1.85
3902 4461 3.516578 GTAGCGAGAGGTGCAAGTT 57.483 52.632 0.00 0.00 43.85 2.66
3928 4487 0.040870 CGCGCAACACACCATTTACA 60.041 50.000 8.75 0.00 0.00 2.41
3929 4488 1.334288 GCGCGCAACACACCATTTAC 61.334 55.000 29.10 0.00 0.00 2.01
3930 4489 1.081774 GCGCGCAACACACCATTTA 60.082 52.632 29.10 0.00 0.00 1.40
3931 4490 2.354539 GCGCGCAACACACCATTT 60.355 55.556 29.10 0.00 0.00 2.32
3932 4491 4.681643 CGCGCGCAACACACCATT 62.682 61.111 32.61 0.00 0.00 3.16
3959 4518 0.465460 GAACCAGTTGGACACCTGCA 60.465 55.000 4.92 0.00 38.94 4.41
3960 4519 0.465460 TGAACCAGTTGGACACCTGC 60.465 55.000 4.92 0.00 38.94 4.85
3961 4520 2.154462 GATGAACCAGTTGGACACCTG 58.846 52.381 4.92 0.00 38.94 4.00
3962 4521 1.774254 TGATGAACCAGTTGGACACCT 59.226 47.619 4.92 0.00 38.94 4.00
4059 4618 2.035237 TAGGGTTTATCAGGCCGCCG 62.035 60.000 3.05 0.00 0.00 6.46
4203 4765 4.953868 CCGGCGTCGTGTCCAACA 62.954 66.667 9.28 0.00 33.95 3.33
4263 4825 3.682292 GACGCCGAAGCCCTCCATT 62.682 63.158 0.00 0.00 34.57 3.16
4270 4832 3.195698 GTCCATGACGCCGAAGCC 61.196 66.667 0.00 0.00 34.57 4.35
4292 4854 1.070786 TCAAAGTCGAGGTGGTGGC 59.929 57.895 0.00 0.00 0.00 5.01
4590 5152 2.822399 CTCATCCCCCGGTAGTGC 59.178 66.667 0.00 0.00 0.00 4.40
4591 5153 2.822399 GCTCATCCCCCGGTAGTG 59.178 66.667 0.00 0.00 0.00 2.74
4592 5154 2.838225 CGCTCATCCCCCGGTAGT 60.838 66.667 0.00 0.00 0.00 2.73
4614 5176 0.951040 GGTCACGGAGCAGGTGAAAG 60.951 60.000 6.14 0.00 45.20 2.62
4676 5253 0.179156 GTGGATGGCATTCGTGCAAG 60.179 55.000 0.00 0.00 34.50 4.01
4739 5316 1.229529 CAGGTACAGGTCCACCCCT 60.230 63.158 0.00 0.00 35.25 4.79
4771 5362 1.652329 GCAATGTCGCGTATGCAGC 60.652 57.895 18.06 9.11 42.97 5.25
4778 5369 2.332654 GGGGAAAGCAATGTCGCGT 61.333 57.895 5.77 0.00 36.85 6.01
4837 5429 0.037326 GTCACGCCAACATGAGGAGA 60.037 55.000 16.48 7.17 0.00 3.71
4841 5433 0.713883 GTACGTCACGCCAACATGAG 59.286 55.000 0.00 0.00 0.00 2.90
4842 5434 1.004785 CGTACGTCACGCCAACATGA 61.005 55.000 7.22 0.00 45.03 3.07
4844 5436 3.850923 CGTACGTCACGCCAACAT 58.149 55.556 7.22 0.00 45.03 2.71
4853 5445 2.257371 GACTGCAGCCGTACGTCA 59.743 61.111 15.27 5.64 0.00 4.35
4854 5446 2.506438 GGACTGCAGCCGTACGTC 60.506 66.667 15.27 0.00 0.00 4.34
4892 5495 0.451783 GCAACTTACCATTCCGGCAG 59.548 55.000 0.00 0.00 39.03 4.85
4893 5496 0.250945 TGCAACTTACCATTCCGGCA 60.251 50.000 0.00 0.00 39.03 5.69
4894 5497 0.170339 GTGCAACTTACCATTCCGGC 59.830 55.000 0.00 0.00 39.03 6.13
4895 5498 1.529226 TGTGCAACTTACCATTCCGG 58.471 50.000 0.00 0.00 38.04 5.14
4906 5509 6.036083 CGCAGTACTCTAATTAATGTGCAACT 59.964 38.462 0.00 0.00 38.04 3.16
4930 5533 0.506932 CTGGTGCACGTTCTGTTACG 59.493 55.000 11.45 0.00 46.52 3.18
4932 5535 0.179070 TGCTGGTGCACGTTCTGTTA 60.179 50.000 11.45 0.00 45.31 2.41
4934 5537 1.889105 CTGCTGGTGCACGTTCTGT 60.889 57.895 11.45 0.00 45.31 3.41
4943 5546 4.783621 TCATCGCCCTGCTGGTGC 62.784 66.667 9.00 10.43 44.80 5.01
4944 5547 0.179048 TATTCATCGCCCTGCTGGTG 60.179 55.000 9.00 4.50 46.66 4.17
4945 5548 0.179045 GTATTCATCGCCCTGCTGGT 60.179 55.000 9.00 0.00 36.04 4.00
4946 5549 1.224069 CGTATTCATCGCCCTGCTGG 61.224 60.000 1.89 1.89 37.09 4.85
4947 5550 0.530650 ACGTATTCATCGCCCTGCTG 60.531 55.000 0.00 0.00 0.00 4.41
4948 5551 1.037493 TACGTATTCATCGCCCTGCT 58.963 50.000 0.00 0.00 0.00 4.24
4949 5552 1.137513 GTACGTATTCATCGCCCTGC 58.862 55.000 0.00 0.00 0.00 4.85
4950 5553 1.268896 ACGTACGTATTCATCGCCCTG 60.269 52.381 21.41 0.00 0.00 4.45
4951 5554 1.027357 ACGTACGTATTCATCGCCCT 58.973 50.000 21.41 0.00 0.00 5.19
4957 5560 1.335324 GCCGGCTACGTACGTATTCAT 60.335 52.381 26.98 3.72 38.78 2.57
4961 5564 2.896801 CGGCCGGCTACGTACGTAT 61.897 63.158 26.98 6.08 38.78 3.06
4993 5596 1.769733 TCCAAACTGCACGTACGTAC 58.230 50.000 22.34 16.78 0.00 3.67
4994 5597 2.396601 CTTCCAAACTGCACGTACGTA 58.603 47.619 22.34 5.54 0.00 3.57
4995 5598 1.214367 CTTCCAAACTGCACGTACGT 58.786 50.000 16.72 16.72 0.00 3.57
5002 5605 2.260869 GCTCCGCTTCCAAACTGCA 61.261 57.895 0.00 0.00 0.00 4.41
5004 5607 2.680913 CCGCTCCGCTTCCAAACTG 61.681 63.158 0.00 0.00 0.00 3.16
5060 5663 0.035458 CCCCTAGACAATCATCCGGC 59.965 60.000 0.00 0.00 0.00 6.13
5061 5664 1.344763 GTCCCCTAGACAATCATCCGG 59.655 57.143 0.00 0.00 45.55 5.14
5088 5692 6.532302 TCGAACTACAAATAATAAGCTGCGAA 59.468 34.615 0.00 0.00 0.00 4.70
5109 5713 5.651576 TCATCCACCAATTTGATCAATCGAA 59.348 36.000 9.40 0.00 34.85 3.71
5249 5853 3.067106 CCAAACGCACACTCTTCAGTAT 58.933 45.455 0.00 0.00 0.00 2.12
5287 5891 9.535878 GAGGGAAGATATAAGTACACTCTTTTG 57.464 37.037 0.00 0.00 0.00 2.44
5292 5896 6.935771 TCGAGAGGGAAGATATAAGTACACTC 59.064 42.308 0.00 0.00 0.00 3.51
5302 5907 6.195600 AGTCTAGTTCGAGAGGGAAGATAT 57.804 41.667 0.00 0.00 0.00 1.63
5315 5920 1.076332 CGGGGCAAAAGTCTAGTTCG 58.924 55.000 0.00 0.00 0.00 3.95
5318 5923 2.651382 AAACGGGGCAAAAGTCTAGT 57.349 45.000 0.00 0.00 0.00 2.57
5323 5928 7.629866 GCTTTATCTATAAAACGGGGCAAAAGT 60.630 37.037 0.00 0.00 32.39 2.66
5328 5933 4.783055 TGCTTTATCTATAAAACGGGGCA 58.217 39.130 3.53 3.53 32.39 5.36
5363 5968 3.060602 GCTATCGAGATTGGTACTTGGC 58.939 50.000 0.00 0.00 0.00 4.52
5373 5978 4.686554 GCCGTCTTATTTGCTATCGAGATT 59.313 41.667 0.00 0.00 0.00 2.40
5374 5979 4.021894 AGCCGTCTTATTTGCTATCGAGAT 60.022 41.667 0.00 0.00 30.97 2.75
5375 5980 3.318275 AGCCGTCTTATTTGCTATCGAGA 59.682 43.478 0.00 0.00 30.97 4.04
5376 5981 3.426859 CAGCCGTCTTATTTGCTATCGAG 59.573 47.826 0.00 0.00 31.69 4.04
5377 5982 3.381045 CAGCCGTCTTATTTGCTATCGA 58.619 45.455 0.00 0.00 31.69 3.59
5378 5983 2.476619 CCAGCCGTCTTATTTGCTATCG 59.523 50.000 0.00 0.00 31.69 2.92
5407 6012 2.948979 TCTTTCTTTGGCGTGATTGTGT 59.051 40.909 0.00 0.00 0.00 3.72
5423 6028 8.335356 GGCCTTTTTATGTTTCTTGTTTCTTTC 58.665 33.333 0.00 0.00 0.00 2.62
5431 6036 3.987220 CGGTGGCCTTTTTATGTTTCTTG 59.013 43.478 3.32 0.00 0.00 3.02
5438 6043 0.530288 CACCCGGTGGCCTTTTTATG 59.470 55.000 9.99 0.00 33.59 1.90
5460 6065 3.365364 CCCGTACGACGACTTCTTAGTTT 60.365 47.826 18.76 0.00 46.05 2.66
5471 6076 3.326889 CTTTCCGCCCGTACGACGA 62.327 63.158 25.50 12.90 46.05 4.20
5511 6116 1.488705 TTGGACTTCCCATGGACGCT 61.489 55.000 15.22 0.00 46.10 5.07
5521 6126 1.737008 GCGACCGACTTGGACTTCC 60.737 63.158 0.00 0.00 42.00 3.46
5526 6131 4.047059 GACCGCGACCGACTTGGA 62.047 66.667 8.23 0.00 42.00 3.53
5603 6208 1.956477 TCTTCCTGTGGCAAGCTTTTC 59.044 47.619 0.00 0.00 0.00 2.29
5615 6220 4.161565 TGGTGATTAAGCGTATCTTCCTGT 59.838 41.667 0.00 0.00 36.25 4.00
5617 6222 5.552870 ATGGTGATTAAGCGTATCTTCCT 57.447 39.130 0.00 0.00 36.25 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.