Multiple sequence alignment - TraesCS4B01G344600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G344600 chr4B 100.000 2097 0 0 979 3075 638120954 638123050 0.000000e+00 3873.0
1 TraesCS4B01G344600 chr4B 100.000 588 0 0 1 588 638119976 638120563 0.000000e+00 1086.0
2 TraesCS4B01G344600 chr4D 92.426 2139 89 41 987 3075 497206550 497208665 0.000000e+00 2985.0
3 TraesCS4B01G344600 chr4D 88.250 400 17 8 209 588 497206007 497206396 4.680000e-123 451.0
4 TraesCS4B01G344600 chr4D 94.000 50 3 0 2 51 497205947 497205996 3.290000e-10 76.8
5 TraesCS4B01G344600 chr5A 90.973 1274 48 29 979 2194 677159587 677160851 0.000000e+00 1653.0
6 TraesCS4B01G344600 chr5A 94.084 879 42 5 2198 3072 677160938 677161810 0.000000e+00 1327.0
7 TraesCS4B01G344600 chr5A 92.007 563 29 10 35 588 677140041 677140596 0.000000e+00 776.0
8 TraesCS4B01G344600 chr7D 80.060 331 64 2 2710 3039 7173049 7172720 8.520000e-61 244.0
9 TraesCS4B01G344600 chr7D 78.485 330 62 6 2710 3039 7187067 7186747 1.120000e-49 207.0
10 TraesCS4B01G344600 chrUn 78.286 350 72 4 2692 3039 51234521 51234868 3.990000e-54 222.0
11 TraesCS4B01G344600 chrUn 78.852 331 68 2 2710 3039 289094268 289093939 3.990000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G344600 chr4B 638119976 638123050 3074 False 2479.500000 3873 100.000000 1 3075 2 chr4B.!!$F1 3074
1 TraesCS4B01G344600 chr4D 497205947 497208665 2718 False 1170.933333 2985 91.558667 2 3075 3 chr4D.!!$F1 3073
2 TraesCS4B01G344600 chr5A 677159587 677161810 2223 False 1490.000000 1653 92.528500 979 3072 2 chr5A.!!$F2 2093
3 TraesCS4B01G344600 chr5A 677140041 677140596 555 False 776.000000 776 92.007000 35 588 1 chr5A.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 209 0.771755 GTGGGGAGAAGTGGGAAAGT 59.228 55.0 0.0 0.0 0.0 2.66 F
1326 1356 0.391395 CTCCTGCTCTGCTCTGGTTG 60.391 60.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1791 0.040204 AGGTGAAATTGAGCCCCAGG 59.960 55.0 0.00 0.0 0.00 4.45 R
2508 2705 0.538977 AGCTGCAATGGAACTGCACT 60.539 50.0 1.02 0.0 34.61 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.060900 TCTCAAAGCAAGAACTAGTGCAG 58.939 43.478 3.00 0.00 43.42 4.41
70 71 6.852420 ACTACAAGATAACCAGAGCTACAA 57.148 37.500 0.00 0.00 0.00 2.41
72 73 7.324178 ACTACAAGATAACCAGAGCTACAAAG 58.676 38.462 0.00 0.00 0.00 2.77
91 94 9.303537 CTACAAAGCTACTAAATCCTGAAGTAC 57.696 37.037 0.00 0.00 0.00 2.73
116 119 2.128771 AACACAGACCAACAGCACTT 57.871 45.000 0.00 0.00 0.00 3.16
118 121 1.210478 ACACAGACCAACAGCACTTCT 59.790 47.619 0.00 0.00 0.00 2.85
143 146 2.156504 CAGCGACAACTGAAGCTTACAG 59.843 50.000 18.52 18.52 40.25 2.74
159 162 7.617041 AGCTTACAGATTCAACTATTTCACC 57.383 36.000 0.00 0.00 0.00 4.02
164 167 4.946157 CAGATTCAACTATTTCACCTGGCT 59.054 41.667 0.00 0.00 0.00 4.75
169 172 5.734720 TCAACTATTTCACCTGGCTCTAAG 58.265 41.667 0.00 0.00 0.00 2.18
170 173 4.762289 ACTATTTCACCTGGCTCTAAGG 57.238 45.455 0.00 0.00 40.93 2.69
174 182 1.573108 TCACCTGGCTCTAAGGAAGG 58.427 55.000 0.00 0.00 38.27 3.46
182 190 1.740718 GCTCTAAGGAAGGAAGCCACG 60.741 57.143 0.00 0.00 0.00 4.94
184 192 1.275291 TCTAAGGAAGGAAGCCACGTG 59.725 52.381 9.08 9.08 0.00 4.49
198 206 1.460689 ACGTGGGGAGAAGTGGGAA 60.461 57.895 0.00 0.00 0.00 3.97
201 209 0.771755 GTGGGGAGAAGTGGGAAAGT 59.228 55.000 0.00 0.00 0.00 2.66
206 214 1.064825 GAGAAGTGGGAAAGTGGGGA 58.935 55.000 0.00 0.00 0.00 4.81
1033 1060 4.270153 TGACCCTGCCCTCCACCT 62.270 66.667 0.00 0.00 0.00 4.00
1298 1328 1.351017 CACCAATGTCCACCAGGTAGT 59.649 52.381 0.00 0.00 35.89 2.73
1299 1329 1.351017 ACCAATGTCCACCAGGTAGTG 59.649 52.381 0.00 0.00 37.51 2.74
1323 1353 1.678598 CCTCTCCTGCTCTGCTCTGG 61.679 65.000 0.00 0.00 0.00 3.86
1325 1355 0.543883 TCTCCTGCTCTGCTCTGGTT 60.544 55.000 0.00 0.00 0.00 3.67
1326 1356 0.391395 CTCCTGCTCTGCTCTGGTTG 60.391 60.000 0.00 0.00 0.00 3.77
1327 1357 1.123861 TCCTGCTCTGCTCTGGTTGT 61.124 55.000 0.00 0.00 0.00 3.32
1328 1358 0.954449 CCTGCTCTGCTCTGGTTGTG 60.954 60.000 0.00 0.00 0.00 3.33
1329 1359 1.575576 CTGCTCTGCTCTGGTTGTGC 61.576 60.000 0.00 0.00 35.88 4.57
1330 1360 2.331132 GCTCTGCTCTGGTTGTGCC 61.331 63.158 0.00 0.00 34.56 5.01
1331 1361 1.374190 CTCTGCTCTGGTTGTGCCT 59.626 57.895 0.00 0.00 38.35 4.75
1347 1407 0.960364 GCCTCCATTTCTTGCGTGGA 60.960 55.000 0.00 0.00 39.61 4.02
1358 1418 2.749076 TCTTGCGTGGATTCTTGATTGG 59.251 45.455 0.00 0.00 0.00 3.16
1362 1422 2.487762 GCGTGGATTCTTGATTGGTTGA 59.512 45.455 0.00 0.00 0.00 3.18
1365 1425 5.335127 CGTGGATTCTTGATTGGTTGATTC 58.665 41.667 0.00 0.00 0.00 2.52
1368 1428 7.031975 GTGGATTCTTGATTGGTTGATTCTTC 58.968 38.462 0.00 0.00 0.00 2.87
1393 1453 1.377725 CTGGTAGGTGCCCAAGCTG 60.378 63.158 0.00 0.00 40.80 4.24
1599 1659 4.120244 GGTGAGCCCTCTCTGTCA 57.880 61.111 0.00 0.00 40.03 3.58
1600 1660 1.594310 GGTGAGCCCTCTCTGTCAC 59.406 63.158 0.00 0.00 40.03 3.67
1601 1661 1.214062 GTGAGCCCTCTCTGTCACG 59.786 63.158 0.00 0.00 40.03 4.35
1603 1663 3.363844 GAGCCCTCTCTGTCACGCC 62.364 68.421 0.00 0.00 36.42 5.68
1604 1664 3.386237 GCCCTCTCTGTCACGCCT 61.386 66.667 0.00 0.00 0.00 5.52
1605 1665 2.575993 CCCTCTCTGTCACGCCTG 59.424 66.667 0.00 0.00 0.00 4.85
1609 1669 2.152297 CTCTCTGTCACGCCTGCACT 62.152 60.000 0.00 0.00 0.00 4.40
1610 1670 1.301244 CTCTGTCACGCCTGCACTT 60.301 57.895 0.00 0.00 0.00 3.16
1627 1698 3.548587 CACTTTGAAATGCACACGAGAG 58.451 45.455 0.00 0.00 0.00 3.20
1631 1702 2.407090 TGAAATGCACACGAGAGACAG 58.593 47.619 0.00 0.00 0.00 3.51
1632 1703 2.035832 TGAAATGCACACGAGAGACAGA 59.964 45.455 0.00 0.00 0.00 3.41
1633 1704 3.257393 GAAATGCACACGAGAGACAGAT 58.743 45.455 0.00 0.00 0.00 2.90
1634 1705 3.325293 AATGCACACGAGAGACAGATT 57.675 42.857 0.00 0.00 0.00 2.40
1635 1706 2.070262 TGCACACGAGAGACAGATTG 57.930 50.000 0.00 0.00 0.00 2.67
1636 1707 1.337167 TGCACACGAGAGACAGATTGG 60.337 52.381 0.00 0.00 0.00 3.16
1637 1708 1.337260 GCACACGAGAGACAGATTGGT 60.337 52.381 0.00 0.00 0.00 3.67
1639 1710 3.502920 CACACGAGAGACAGATTGGTAC 58.497 50.000 0.00 0.00 0.00 3.34
1642 1716 4.395542 ACACGAGAGACAGATTGGTACTAC 59.604 45.833 0.00 0.00 0.00 2.73
1696 1770 7.492669 GCATTTCAGTTAAGCTGTAGTATCAGA 59.507 37.037 0.00 0.00 45.23 3.27
1709 1791 7.479897 TGTAGTATCAGAGATAGTTGTCGAC 57.520 40.000 9.11 9.11 0.00 4.20
1710 1792 6.482641 TGTAGTATCAGAGATAGTTGTCGACC 59.517 42.308 14.12 0.00 0.00 4.79
1711 1793 5.686753 AGTATCAGAGATAGTTGTCGACCT 58.313 41.667 14.12 6.32 0.00 3.85
1757 1840 4.636206 GGATGTAGGTGATGTTCAACTTCC 59.364 45.833 0.00 0.00 42.87 3.46
1831 1914 2.742372 CCCAACAGCTTCGACGGG 60.742 66.667 0.00 0.00 0.00 5.28
1930 2013 2.277084 GGTATGGACGTCACCATTGTC 58.723 52.381 18.91 7.39 47.00 3.18
2068 2151 3.651980 GAGCAAGGGCAGGGGAAGG 62.652 68.421 0.00 0.00 44.61 3.46
2100 2202 1.268079 GAGCTTTGTTGCTTCCCACTC 59.732 52.381 0.00 0.00 44.17 3.51
2110 2212 1.200948 GCTTCCCACTCTGTCAATTGC 59.799 52.381 0.00 0.00 0.00 3.56
2186 2295 9.008965 TGTTATTACTTGCTGTTCATGTTGTAT 57.991 29.630 0.00 0.00 35.13 2.29
2231 2423 3.814842 GGAAATTTTTGCTTTGGTCAGGG 59.185 43.478 0.00 0.00 0.00 4.45
2233 2425 5.454045 GGAAATTTTTGCTTTGGTCAGGGTA 60.454 40.000 0.00 0.00 0.00 3.69
2234 2426 5.622346 AATTTTTGCTTTGGTCAGGGTAA 57.378 34.783 0.00 0.00 0.00 2.85
2239 2431 3.838565 TGCTTTGGTCAGGGTAAATTCA 58.161 40.909 0.00 0.00 0.00 2.57
2255 2447 7.549134 GGGTAAATTCATTTTGGGAGTTCATTC 59.451 37.037 0.00 0.00 0.00 2.67
2268 2460 4.171005 GAGTTCATTCCATTGCACACATG 58.829 43.478 0.00 0.00 0.00 3.21
2289 2481 6.366877 ACATGTGTTTATTCTGCAGCATTTTC 59.633 34.615 9.47 0.00 0.00 2.29
2290 2482 5.840715 TGTGTTTATTCTGCAGCATTTTCA 58.159 33.333 9.47 1.65 0.00 2.69
2313 2510 7.892609 TCAAACTGCTTGACTATACTAAGACA 58.107 34.615 0.00 0.00 39.20 3.41
2316 2513 7.228314 ACTGCTTGACTATACTAAGACACAA 57.772 36.000 0.00 0.00 0.00 3.33
2329 2526 9.809096 ATACTAAGACACAAAGTACATCATCTG 57.191 33.333 0.00 0.00 0.00 2.90
2338 2535 6.772716 ACAAAGTACATCATCTGTTTGGTTCT 59.227 34.615 0.00 0.00 39.39 3.01
2355 2552 3.457012 GGTTCTAACCCTGGTGGCTATAA 59.543 47.826 0.02 0.00 43.43 0.98
2359 2556 3.577805 AACCCTGGTGGCTATAACATC 57.422 47.619 0.00 0.00 37.83 3.06
2363 2560 2.376518 CCTGGTGGCTATAACATCCCAT 59.623 50.000 0.00 0.00 0.00 4.00
2364 2561 3.587061 CCTGGTGGCTATAACATCCCATA 59.413 47.826 0.00 0.00 0.00 2.74
2365 2562 4.565652 CCTGGTGGCTATAACATCCCATAC 60.566 50.000 0.00 0.00 0.00 2.39
2366 2563 3.007506 TGGTGGCTATAACATCCCATACG 59.992 47.826 0.00 0.00 0.00 3.06
2370 2567 3.623060 GGCTATAACATCCCATACGCATG 59.377 47.826 0.00 0.00 0.00 4.06
2427 2624 0.030101 CGATGACGAGCTCTTCCTCC 59.970 60.000 16.84 5.80 42.66 4.30
2538 2735 0.893447 ATTGCAGCTTCTTGGCCTTC 59.107 50.000 3.32 0.00 0.00 3.46
2550 2747 4.443266 GCCTTCGGAGCGAGCTGT 62.443 66.667 0.84 0.00 37.14 4.40
2667 2864 1.745489 GTTGATGCCGGTGACCTCC 60.745 63.158 1.90 0.00 0.00 4.30
2826 3023 2.362503 ATCCTGACGGCCGACTCA 60.363 61.111 35.90 24.89 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.538047 TGCTTTGAGAAGGATGTGCC 58.462 50.000 0.00 0.00 33.34 5.01
14 15 2.816087 TCTTGCTTTGAGAAGGATGTGC 59.184 45.455 0.00 0.00 32.96 4.57
45 46 6.864342 TGTAGCTCTGGTTATCTTGTAGTTC 58.136 40.000 0.00 0.00 0.00 3.01
91 94 2.744202 GCTGTTGGTCTGTGTTATCCTG 59.256 50.000 0.00 0.00 0.00 3.86
101 104 1.876156 GGAAGAAGTGCTGTTGGTCTG 59.124 52.381 0.00 0.00 0.00 3.51
102 105 1.202818 GGGAAGAAGTGCTGTTGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
116 119 0.756294 TTCAGTTGTCGCTGGGAAGA 59.244 50.000 0.00 0.00 37.12 2.87
118 121 0.884704 GCTTCAGTTGTCGCTGGGAA 60.885 55.000 0.00 0.00 37.12 3.97
143 146 5.189180 AGAGCCAGGTGAAATAGTTGAATC 58.811 41.667 0.00 0.00 0.00 2.52
159 162 2.323968 GCTTCCTTCCTTAGAGCCAG 57.676 55.000 0.00 0.00 0.00 4.85
164 167 1.275291 CACGTGGCTTCCTTCCTTAGA 59.725 52.381 7.95 0.00 0.00 2.10
169 172 2.359975 CCCACGTGGCTTCCTTCC 60.360 66.667 29.75 0.00 0.00 3.46
170 173 2.359975 CCCCACGTGGCTTCCTTC 60.360 66.667 29.75 0.00 0.00 3.46
174 182 1.376037 CTTCTCCCCACGTGGCTTC 60.376 63.158 29.75 0.00 0.00 3.86
182 190 0.771755 ACTTTCCCACTTCTCCCCAC 59.228 55.000 0.00 0.00 0.00 4.61
184 192 0.038310 CCACTTTCCCACTTCTCCCC 59.962 60.000 0.00 0.00 0.00 4.81
198 206 2.421529 GGTTGCGATTCTATCCCCACTT 60.422 50.000 0.00 0.00 0.00 3.16
201 209 1.507140 AGGTTGCGATTCTATCCCCA 58.493 50.000 0.00 0.00 0.00 4.96
206 214 3.738281 CGAGGACAAGGTTGCGATTCTAT 60.738 47.826 0.00 0.00 0.00 1.98
296 305 4.382291 TGTTTCCACGCTGTTGTTATAGT 58.618 39.130 0.00 0.00 0.00 2.12
357 366 0.250295 TTCTGGAAAGGTCTGTGGCG 60.250 55.000 0.00 0.00 0.00 5.69
408 417 2.472029 GAAGATCTCCTCCTCCACCAA 58.528 52.381 0.00 0.00 0.00 3.67
553 580 2.156051 GAGTTGGTCGGCTCCGTCTT 62.156 60.000 8.28 0.00 40.74 3.01
1323 1353 1.666888 CGCAAGAAATGGAGGCACAAC 60.667 52.381 0.00 0.00 43.02 3.32
1325 1355 0.537143 ACGCAAGAAATGGAGGCACA 60.537 50.000 0.00 0.00 43.62 4.57
1326 1356 0.109597 CACGCAAGAAATGGAGGCAC 60.110 55.000 0.00 0.00 43.62 5.01
1327 1357 1.243342 CCACGCAAGAAATGGAGGCA 61.243 55.000 0.00 0.00 43.62 4.75
1328 1358 0.960364 TCCACGCAAGAAATGGAGGC 60.960 55.000 0.00 0.00 35.37 4.70
1329 1359 1.755179 ATCCACGCAAGAAATGGAGG 58.245 50.000 0.00 0.00 42.42 4.30
1330 1360 3.012518 AGAATCCACGCAAGAAATGGAG 58.987 45.455 0.00 0.00 42.42 3.86
1331 1361 3.071874 AGAATCCACGCAAGAAATGGA 57.928 42.857 0.00 0.00 43.18 3.41
1347 1407 6.094603 CCGAGAAGAATCAACCAATCAAGAAT 59.905 38.462 0.00 0.00 0.00 2.40
1358 1418 3.665190 ACCAGAACCGAGAAGAATCAAC 58.335 45.455 0.00 0.00 0.00 3.18
1362 1422 3.195825 CACCTACCAGAACCGAGAAGAAT 59.804 47.826 0.00 0.00 0.00 2.40
1365 1425 1.404315 GCACCTACCAGAACCGAGAAG 60.404 57.143 0.00 0.00 0.00 2.85
1368 1428 1.218316 GGCACCTACCAGAACCGAG 59.782 63.158 0.00 0.00 0.00 4.63
1393 1453 2.485814 GCAGTTCACCACAATCTTCTCC 59.514 50.000 0.00 0.00 0.00 3.71
1599 1659 0.318955 GCATTTCAAAGTGCAGGCGT 60.319 50.000 5.47 0.00 40.94 5.68
1600 1660 0.318869 TGCATTTCAAAGTGCAGGCG 60.319 50.000 8.62 0.00 45.60 5.52
1601 1661 3.591979 TGCATTTCAAAGTGCAGGC 57.408 47.368 8.62 0.00 45.60 4.85
1605 1665 2.046313 CTCGTGTGCATTTCAAAGTGC 58.954 47.619 3.52 3.52 41.61 4.40
1609 1669 3.202097 TGTCTCTCGTGTGCATTTCAAA 58.798 40.909 0.00 0.00 0.00 2.69
1610 1670 2.802247 CTGTCTCTCGTGTGCATTTCAA 59.198 45.455 0.00 0.00 0.00 2.69
1627 1698 9.167311 AGAAATTTCATGTAGTACCAATCTGTC 57.833 33.333 19.99 0.00 0.00 3.51
1631 1702 9.109393 TGCTAGAAATTTCATGTAGTACCAATC 57.891 33.333 19.99 0.82 0.00 2.67
1632 1703 9.113838 CTGCTAGAAATTTCATGTAGTACCAAT 57.886 33.333 19.99 0.00 0.00 3.16
1633 1704 8.100791 ACTGCTAGAAATTTCATGTAGTACCAA 58.899 33.333 22.36 4.61 30.81 3.67
1634 1705 7.620880 ACTGCTAGAAATTTCATGTAGTACCA 58.379 34.615 22.36 9.94 30.81 3.25
1635 1706 8.494016 AACTGCTAGAAATTTCATGTAGTACC 57.506 34.615 23.24 7.73 31.69 3.34
1662 1736 6.830873 AGCTTAACTGAAATGCAAGATTCT 57.169 33.333 10.42 0.00 0.00 2.40
1696 1770 1.486211 CCCCAGGTCGACAACTATCT 58.514 55.000 18.91 0.38 0.00 1.98
1709 1791 0.040204 AGGTGAAATTGAGCCCCAGG 59.960 55.000 0.00 0.00 0.00 4.45
1710 1792 1.928868 AAGGTGAAATTGAGCCCCAG 58.071 50.000 0.00 0.00 0.00 4.45
1711 1793 1.969923 CAAAGGTGAAATTGAGCCCCA 59.030 47.619 0.00 0.00 0.00 4.96
1757 1840 3.474600 CAAGGTTGATGAGCCTATCCAG 58.525 50.000 0.00 0.00 34.15 3.86
1831 1914 1.794222 GATGGTGTAGTTGCCGTGC 59.206 57.895 0.00 0.00 0.00 5.34
1930 2013 4.308458 TCGGTCTTGGCGGTGGTG 62.308 66.667 0.00 0.00 0.00 4.17
2068 2151 4.706527 CAACAAAGCTCGATCTTCACTTC 58.293 43.478 1.35 0.00 0.00 3.01
2100 2202 2.919229 GCAAAAGGATCGCAATTGACAG 59.081 45.455 10.34 0.00 0.00 3.51
2110 2212 4.701956 ACCAAACTATGCAAAAGGATCG 57.298 40.909 0.00 0.00 0.00 3.69
2148 2257 5.772521 CAAGTAATAACAGGCAGCAAAAGT 58.227 37.500 0.00 0.00 0.00 2.66
2186 2295 4.425180 TTTTGTTCTGTGGCAGTAGGTA 57.575 40.909 0.00 0.00 32.61 3.08
2187 2296 3.290948 TTTTGTTCTGTGGCAGTAGGT 57.709 42.857 0.00 0.00 32.61 3.08
2231 2423 8.093927 TGGAATGAACTCCCAAAATGAATTTAC 58.906 33.333 0.00 0.00 34.22 2.01
2233 2425 7.077050 TGGAATGAACTCCCAAAATGAATTT 57.923 32.000 0.00 0.00 34.22 1.82
2234 2426 6.684897 TGGAATGAACTCCCAAAATGAATT 57.315 33.333 0.00 0.00 34.22 2.17
2239 2431 4.286549 TGCAATGGAATGAACTCCCAAAAT 59.713 37.500 0.00 0.00 34.22 1.82
2268 2460 6.768029 TTGAAAATGCTGCAGAATAAACAC 57.232 33.333 20.43 4.26 0.00 3.32
2271 2463 6.073657 GCAGTTTGAAAATGCTGCAGAATAAA 60.074 34.615 21.34 7.10 46.96 1.40
2289 2481 7.598869 TGTGTCTTAGTATAGTCAAGCAGTTTG 59.401 37.037 0.00 0.00 38.17 2.93
2290 2482 7.667557 TGTGTCTTAGTATAGTCAAGCAGTTT 58.332 34.615 0.00 0.00 0.00 2.66
2313 2510 6.772716 AGAACCAAACAGATGATGTACTTTGT 59.227 34.615 0.00 0.00 43.00 2.83
2316 2513 8.324163 GTTAGAACCAAACAGATGATGTACTT 57.676 34.615 0.00 0.00 43.00 2.24
2338 2535 3.393278 GGATGTTATAGCCACCAGGGTTA 59.607 47.826 0.00 0.00 45.14 2.85
2346 2543 3.000727 GCGTATGGGATGTTATAGCCAC 58.999 50.000 0.00 0.00 36.23 5.01
2355 2552 6.098838 ACTGATATATCATGCGTATGGGATGT 59.901 38.462 15.71 5.70 44.18 3.06
2359 2556 6.040955 ACCTACTGATATATCATGCGTATGGG 59.959 42.308 15.71 13.76 36.02 4.00
2363 2560 8.747538 ATGTACCTACTGATATATCATGCGTA 57.252 34.615 15.71 12.91 36.02 4.42
2364 2561 7.646548 ATGTACCTACTGATATATCATGCGT 57.353 36.000 15.71 12.49 36.02 5.24
2365 2562 8.811378 CAAATGTACCTACTGATATATCATGCG 58.189 37.037 15.71 7.31 36.02 4.73
2366 2563 9.102757 CCAAATGTACCTACTGATATATCATGC 57.897 37.037 15.71 5.31 36.02 4.06
2370 2567 7.620880 TGCCCAAATGTACCTACTGATATATC 58.379 38.462 5.73 5.73 0.00 1.63
2427 2624 2.361610 AAGCCCTGCACATTCCCG 60.362 61.111 0.00 0.00 0.00 5.14
2508 2705 0.538977 AGCTGCAATGGAACTGCACT 60.539 50.000 1.02 0.00 34.61 4.40
2550 2747 1.958715 CATGTCCAACGTCACCGCA 60.959 57.895 0.00 0.00 37.70 5.69
2826 3023 2.297033 GGACAACATTGCCATCAACACT 59.703 45.455 0.00 0.00 34.60 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.