Multiple sequence alignment - TraesCS4B01G344000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G344000 chr4B 100.000 2899 0 0 1 2899 637620778 637623676 0.000000e+00 5354.0
1 TraesCS4B01G344000 chr4B 81.746 126 19 4 1146 1269 601792349 601792472 5.110000e-18 102.0
2 TraesCS4B01G344000 chr4D 90.976 2050 79 57 424 2406 497125444 497127454 0.000000e+00 2663.0
3 TraesCS4B01G344000 chr4D 85.714 119 9 2 2789 2899 497128319 497128437 5.070000e-23 119.0
4 TraesCS4B01G344000 chr4D 91.549 71 2 3 2494 2563 497127471 497127538 8.550000e-16 95.3
5 TraesCS4B01G344000 chr5A 88.854 2216 109 68 424 2561 676886281 676888436 0.000000e+00 2597.0
6 TraesCS4B01G344000 chr5A 87.742 155 9 3 2631 2775 676889469 676889623 3.840000e-39 172.0
7 TraesCS4B01G344000 chr5B 98.864 264 3 0 1 264 508060925 508061188 3.380000e-129 472.0
8 TraesCS4B01G344000 chr7B 98.855 262 3 0 1 262 648422907 648423168 4.370000e-128 468.0
9 TraesCS4B01G344000 chr7B 98.473 262 4 0 1 262 60246389 60246128 2.040000e-126 462.0
10 TraesCS4B01G344000 chr2B 98.855 262 3 0 1 262 791018714 791018975 4.370000e-128 468.0
11 TraesCS4B01G344000 chr2B 98.113 265 5 0 1 265 113439939 113439675 2.040000e-126 462.0
12 TraesCS4B01G344000 chr2B 87.500 96 10 2 1422 1516 545366056 545365962 3.050000e-20 110.0
13 TraesCS4B01G344000 chrUn 98.473 262 4 0 1 262 396449695 396449434 2.040000e-126 462.0
14 TraesCS4B01G344000 chrUn 98.473 262 4 0 1 262 396464274 396464535 2.040000e-126 462.0
15 TraesCS4B01G344000 chr6A 98.473 262 4 0 1 262 562293239 562293500 2.040000e-126 462.0
16 TraesCS4B01G344000 chr6A 96.774 93 1 2 336 428 158080395 158080485 1.390000e-33 154.0
17 TraesCS4B01G344000 chr6A 95.833 96 2 2 336 429 172113266 172113171 1.390000e-33 154.0
18 TraesCS4B01G344000 chr6A 82.517 143 23 2 1125 1266 421463946 421464087 1.090000e-24 124.0
19 TraesCS4B01G344000 chr6A 81.343 134 23 2 1134 1266 421226195 421226327 1.100000e-19 108.0
20 TraesCS4B01G344000 chr6A 87.234 94 10 2 1422 1514 428426488 428426580 3.950000e-19 106.0
21 TraesCS4B01G344000 chr3B 97.070 273 7 1 1 273 46078719 46078990 2.630000e-125 459.0
22 TraesCS4B01G344000 chr1A 97.753 89 2 0 336 424 575557271 575557359 1.390000e-33 154.0
23 TraesCS4B01G344000 chr1A 96.591 88 3 0 336 423 551438017 551437930 2.330000e-31 147.0
24 TraesCS4B01G344000 chr5D 95.789 95 3 1 336 430 361646218 361646125 5.000000e-33 152.0
25 TraesCS4B01G344000 chr5D 87.500 80 10 0 1421 1500 200501539 200501618 3.080000e-15 93.5
26 TraesCS4B01G344000 chr3A 94.118 102 3 2 324 425 21405979 21406077 5.000000e-33 152.0
27 TraesCS4B01G344000 chr3A 77.824 239 37 13 1039 1269 60297525 60297755 1.810000e-27 134.0
28 TraesCS4B01G344000 chr2A 91.150 113 7 3 320 431 554133076 554133186 1.800000e-32 150.0
29 TraesCS4B01G344000 chr2A 88.542 96 9 2 1422 1516 607841870 607841776 6.560000e-22 115.0
30 TraesCS4B01G344000 chr1D 96.667 90 3 0 336 425 200825983 200826072 1.800000e-32 150.0
31 TraesCS4B01G344000 chr1B 93.939 99 5 1 335 433 196463143 196463240 6.470000e-32 148.0
32 TraesCS4B01G344000 chr3D 81.818 165 18 8 1111 1269 48070740 48070898 8.430000e-26 128.0
33 TraesCS4B01G344000 chr2D 90.625 96 7 2 1422 1516 466723987 466723893 3.030000e-25 126.0
34 TraesCS4B01G344000 chr6D 82.836 134 21 2 1134 1266 296993425 296993293 5.070000e-23 119.0
35 TraesCS4B01G344000 chr6D 82.836 134 21 2 1134 1266 298207150 298207018 5.070000e-23 119.0
36 TraesCS4B01G344000 chr6D 80.597 134 24 2 1134 1266 297489773 297489641 5.110000e-18 102.0
37 TraesCS4B01G344000 chr6D 86.170 94 11 2 1422 1514 292737751 292737659 1.840000e-17 100.0
38 TraesCS4B01G344000 chr6B 86.022 93 13 0 1422 1514 457216778 457216686 1.840000e-17 100.0
39 TraesCS4B01G344000 chr4A 80.952 126 20 4 1146 1269 683967458 683967581 2.380000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G344000 chr4B 637620778 637623676 2898 False 5354.0 5354 100.000 1 2899 1 chr4B.!!$F2 2898
1 TraesCS4B01G344000 chr4D 497125444 497128437 2993 False 959.1 2663 89.413 424 2899 3 chr4D.!!$F1 2475
2 TraesCS4B01G344000 chr5A 676886281 676889623 3342 False 1384.5 2597 88.298 424 2775 2 chr5A.!!$F1 2351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.036858 GGCATATCTCCGGAGAAGCC 60.037 60.0 38.05 38.05 41.36 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2110 0.471022 TGATATCCCAGCGGCCAGTA 60.471 55.0 2.24 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.044305 AGCTCTGACGCCGTTTGC 61.044 61.111 0.00 0.00 0.00 3.68
18 19 4.090057 GCTCTGACGCCGTTTGCC 62.090 66.667 0.00 0.00 36.24 4.52
19 20 2.664851 CTCTGACGCCGTTTGCCA 60.665 61.111 0.00 0.00 36.24 4.92
20 21 2.664851 TCTGACGCCGTTTGCCAG 60.665 61.111 0.00 0.00 36.24 4.85
21 22 3.726517 CTGACGCCGTTTGCCAGG 61.727 66.667 0.00 0.00 36.24 4.45
45 46 4.849310 CCGGGCCCCACGTGTATG 62.849 72.222 18.66 3.27 0.00 2.39
49 50 4.460683 GCCCCACGTGTATGCCGA 62.461 66.667 15.65 0.00 0.00 5.54
50 51 2.510691 CCCCACGTGTATGCCGAC 60.511 66.667 15.65 0.00 0.00 4.79
51 52 2.883730 CCCACGTGTATGCCGACG 60.884 66.667 15.65 0.00 41.41 5.12
52 53 2.883730 CCACGTGTATGCCGACGG 60.884 66.667 15.65 10.29 39.94 4.79
70 71 2.570181 CCTTCGTAAGCCGACGGT 59.430 61.111 16.73 0.00 46.77 4.83
71 72 1.802636 CCTTCGTAAGCCGACGGTA 59.197 57.895 16.73 0.00 46.77 4.02
72 73 0.248377 CCTTCGTAAGCCGACGGTAG 60.248 60.000 16.73 2.98 46.77 3.18
73 74 2.793946 TCGTAAGCCGACGGTAGC 59.206 61.111 16.73 0.46 41.60 3.58
74 75 1.746615 TCGTAAGCCGACGGTAGCT 60.747 57.895 16.73 3.22 41.60 3.32
75 76 1.585521 CGTAAGCCGACGGTAGCTG 60.586 63.158 16.73 0.00 39.87 4.24
76 77 1.509923 GTAAGCCGACGGTAGCTGT 59.490 57.895 16.73 0.98 39.87 4.40
77 78 0.525029 GTAAGCCGACGGTAGCTGTC 60.525 60.000 16.73 0.00 39.87 3.51
91 92 1.337821 GCTGTCGGCGTATATGTAGC 58.662 55.000 6.85 4.08 0.00 3.58
92 93 1.068472 GCTGTCGGCGTATATGTAGCT 60.068 52.381 6.85 0.00 0.00 3.32
93 94 2.161012 GCTGTCGGCGTATATGTAGCTA 59.839 50.000 6.85 0.00 0.00 3.32
94 95 3.728268 GCTGTCGGCGTATATGTAGCTAG 60.728 52.174 6.85 0.00 0.00 3.42
95 96 2.745821 TGTCGGCGTATATGTAGCTAGG 59.254 50.000 6.85 0.00 0.00 3.02
96 97 1.741706 TCGGCGTATATGTAGCTAGGC 59.258 52.381 6.85 0.00 0.00 3.93
97 98 1.202268 CGGCGTATATGTAGCTAGGCC 60.202 57.143 0.00 0.00 42.62 5.19
98 99 1.202268 GGCGTATATGTAGCTAGGCCG 60.202 57.143 0.00 0.00 38.63 6.13
99 100 1.741706 GCGTATATGTAGCTAGGCCGA 59.258 52.381 0.00 0.00 0.00 5.54
100 101 2.477525 GCGTATATGTAGCTAGGCCGAC 60.478 54.545 0.00 0.00 0.00 4.79
101 102 2.222976 CGTATATGTAGCTAGGCCGACG 60.223 54.545 0.00 0.00 0.00 5.12
102 103 1.174783 ATATGTAGCTAGGCCGACGG 58.825 55.000 10.29 10.29 0.00 4.79
113 114 1.299089 GCCGACGGCCATTTTATGC 60.299 57.895 28.74 0.00 44.06 3.14
114 115 1.358759 CCGACGGCCATTTTATGCC 59.641 57.895 2.24 0.00 44.41 4.40
119 120 1.358759 GGCCATTTTATGCCGACGG 59.641 57.895 10.29 10.29 38.00 4.79
120 121 1.358759 GCCATTTTATGCCGACGGG 59.641 57.895 17.22 0.00 0.00 5.28
121 122 1.381165 GCCATTTTATGCCGACGGGT 61.381 55.000 17.22 0.00 34.97 5.28
122 123 0.380378 CCATTTTATGCCGACGGGTG 59.620 55.000 17.22 0.00 34.97 4.61
123 124 0.248458 CATTTTATGCCGACGGGTGC 60.248 55.000 17.22 1.31 34.97 5.01
124 125 1.381165 ATTTTATGCCGACGGGTGCC 61.381 55.000 17.22 0.00 34.97 5.01
139 140 4.327885 GCCGTCGGCTTATCTCTG 57.672 61.111 28.98 0.00 46.69 3.35
140 141 1.951631 GCCGTCGGCTTATCTCTGC 60.952 63.158 28.98 0.00 46.69 4.26
141 142 1.658717 CCGTCGGCTTATCTCTGCG 60.659 63.158 0.00 0.00 0.00 5.18
142 143 1.064296 CGTCGGCTTATCTCTGCGT 59.936 57.895 0.00 0.00 0.00 5.24
143 144 0.306840 CGTCGGCTTATCTCTGCGTA 59.693 55.000 0.00 0.00 0.00 4.42
144 145 1.660614 CGTCGGCTTATCTCTGCGTAG 60.661 57.143 0.00 0.00 0.00 3.51
162 163 2.812178 CCCGACGGCCTTTGTACG 60.812 66.667 8.86 0.00 0.00 3.67
163 164 3.484547 CCGACGGCCTTTGTACGC 61.485 66.667 0.00 0.00 0.00 4.42
164 165 3.484547 CGACGGCCTTTGTACGCC 61.485 66.667 0.00 0.00 42.05 5.68
169 170 3.484547 GCCTTTGTACGCCGACGG 61.485 66.667 10.29 10.29 46.04 4.79
170 171 3.484547 CCTTTGTACGCCGACGGC 61.485 66.667 29.10 29.10 46.75 5.68
180 181 4.760047 CCGACGGCCAGAACCAGG 62.760 72.222 2.24 0.00 0.00 4.45
181 182 4.003788 CGACGGCCAGAACCAGGT 62.004 66.667 2.24 0.00 0.00 4.00
182 183 2.430367 GACGGCCAGAACCAGGTT 59.570 61.111 3.79 3.79 0.00 3.50
183 184 1.966451 GACGGCCAGAACCAGGTTG 60.966 63.158 10.47 0.00 0.00 3.77
184 185 2.113139 CGGCCAGAACCAGGTTGT 59.887 61.111 10.47 1.75 0.00 3.32
185 186 1.966451 CGGCCAGAACCAGGTTGTC 60.966 63.158 10.47 0.00 0.00 3.18
186 187 1.966451 GGCCAGAACCAGGTTGTCG 60.966 63.158 10.47 0.00 0.00 4.35
187 188 1.966451 GCCAGAACCAGGTTGTCGG 60.966 63.158 10.47 11.12 0.00 4.79
188 189 1.966451 CCAGAACCAGGTTGTCGGC 60.966 63.158 10.47 0.00 0.00 5.54
189 190 1.227823 CAGAACCAGGTTGTCGGCA 60.228 57.895 10.47 0.00 0.00 5.69
190 191 0.606401 CAGAACCAGGTTGTCGGCAT 60.606 55.000 10.47 0.00 0.00 4.40
191 192 0.981183 AGAACCAGGTTGTCGGCATA 59.019 50.000 10.47 0.00 0.00 3.14
192 193 1.559682 AGAACCAGGTTGTCGGCATAT 59.440 47.619 10.47 0.00 0.00 1.78
193 194 1.940613 GAACCAGGTTGTCGGCATATC 59.059 52.381 10.47 0.00 0.00 1.63
194 195 1.204146 ACCAGGTTGTCGGCATATCT 58.796 50.000 0.00 0.00 0.00 1.98
195 196 1.139058 ACCAGGTTGTCGGCATATCTC 59.861 52.381 0.00 0.00 0.00 2.75
196 197 1.541233 CCAGGTTGTCGGCATATCTCC 60.541 57.143 0.00 0.00 0.00 3.71
198 199 0.600255 GGTTGTCGGCATATCTCCGG 60.600 60.000 11.70 0.00 46.43 5.14
199 200 0.387929 GTTGTCGGCATATCTCCGGA 59.612 55.000 2.93 2.93 46.43 5.14
200 201 0.673985 TTGTCGGCATATCTCCGGAG 59.326 55.000 26.32 26.32 46.43 4.63
201 202 0.179001 TGTCGGCATATCTCCGGAGA 60.179 55.000 35.29 35.29 46.43 3.71
202 203 0.959553 GTCGGCATATCTCCGGAGAA 59.040 55.000 36.58 24.83 46.43 2.87
203 204 1.068194 GTCGGCATATCTCCGGAGAAG 60.068 57.143 36.58 27.71 46.43 2.85
204 205 0.389166 CGGCATATCTCCGGAGAAGC 60.389 60.000 36.58 34.01 42.99 3.86
205 206 0.036858 GGCATATCTCCGGAGAAGCC 60.037 60.000 38.05 38.05 41.36 4.35
231 232 3.177600 CCGTCGGCATTGTTCTGG 58.822 61.111 0.00 0.00 0.00 3.86
232 233 2.480555 CGTCGGCATTGTTCTGGC 59.519 61.111 0.00 0.00 38.28 4.85
233 234 2.877691 GTCGGCATTGTTCTGGCC 59.122 61.111 0.00 0.00 44.27 5.36
236 237 2.877691 GGCATTGTTCTGGCCGTC 59.122 61.111 0.00 0.00 38.04 4.79
237 238 2.480555 GCATTGTTCTGGCCGTCG 59.519 61.111 0.00 0.00 0.00 5.12
238 239 3.039202 GCATTGTTCTGGCCGTCGG 62.039 63.158 6.99 6.99 0.00 4.79
239 240 2.046314 ATTGTTCTGGCCGTCGGG 60.046 61.111 14.38 0.00 0.00 5.14
240 241 3.622060 ATTGTTCTGGCCGTCGGGG 62.622 63.158 14.38 0.00 39.58 5.73
242 243 3.384532 GTTCTGGCCGTCGGGGTA 61.385 66.667 14.38 0.00 38.44 3.69
243 244 2.364579 TTCTGGCCGTCGGGGTAT 60.365 61.111 14.38 0.00 38.44 2.73
244 245 2.727392 TTCTGGCCGTCGGGGTATG 61.727 63.158 14.38 0.00 38.44 2.39
245 246 4.235762 CTGGCCGTCGGGGTATGG 62.236 72.222 14.38 0.00 38.44 2.74
256 257 2.192175 GGTATGGCCCTGTTCCGG 59.808 66.667 0.00 0.00 0.00 5.14
257 258 2.676265 GGTATGGCCCTGTTCCGGT 61.676 63.158 0.00 0.00 0.00 5.28
258 259 1.339644 GGTATGGCCCTGTTCCGGTA 61.340 60.000 0.00 0.00 0.00 4.02
259 260 0.106149 GTATGGCCCTGTTCCGGTAG 59.894 60.000 0.00 0.00 0.00 3.18
260 261 0.325860 TATGGCCCTGTTCCGGTAGT 60.326 55.000 0.00 0.00 0.00 2.73
261 262 1.910580 ATGGCCCTGTTCCGGTAGTG 61.911 60.000 0.00 0.00 0.00 2.74
262 263 2.288025 GGCCCTGTTCCGGTAGTGA 61.288 63.158 0.00 0.00 0.00 3.41
263 264 1.675219 GCCCTGTTCCGGTAGTGAA 59.325 57.895 0.00 0.00 0.00 3.18
264 265 0.252197 GCCCTGTTCCGGTAGTGAAT 59.748 55.000 0.00 0.00 0.00 2.57
265 266 1.483415 GCCCTGTTCCGGTAGTGAATA 59.517 52.381 0.00 0.00 0.00 1.75
266 267 2.740904 GCCCTGTTCCGGTAGTGAATAC 60.741 54.545 0.00 0.00 0.00 1.89
267 268 2.480759 CCCTGTTCCGGTAGTGAATACG 60.481 54.545 0.00 0.00 34.99 3.06
268 269 2.165030 CCTGTTCCGGTAGTGAATACGT 59.835 50.000 0.00 0.00 34.99 3.57
269 270 3.176708 CTGTTCCGGTAGTGAATACGTG 58.823 50.000 0.00 0.00 34.99 4.49
270 271 2.557924 TGTTCCGGTAGTGAATACGTGT 59.442 45.455 0.00 0.00 34.99 4.49
271 272 3.005684 TGTTCCGGTAGTGAATACGTGTT 59.994 43.478 0.00 0.00 34.99 3.32
272 273 3.220507 TCCGGTAGTGAATACGTGTTG 57.779 47.619 0.91 0.00 34.99 3.33
273 274 2.557924 TCCGGTAGTGAATACGTGTTGT 59.442 45.455 0.91 0.00 34.99 3.32
274 275 2.664568 CCGGTAGTGAATACGTGTTGTG 59.335 50.000 0.91 0.00 34.99 3.33
275 276 2.664568 CGGTAGTGAATACGTGTTGTGG 59.335 50.000 0.91 0.00 34.99 4.17
276 277 2.997986 GGTAGTGAATACGTGTTGTGGG 59.002 50.000 0.91 0.00 34.99 4.61
277 278 3.306225 GGTAGTGAATACGTGTTGTGGGA 60.306 47.826 0.91 0.00 34.99 4.37
278 279 2.762745 AGTGAATACGTGTTGTGGGAC 58.237 47.619 0.91 0.00 0.00 4.46
279 280 1.802365 GTGAATACGTGTTGTGGGACC 59.198 52.381 0.91 0.00 0.00 4.46
280 281 1.695242 TGAATACGTGTTGTGGGACCT 59.305 47.619 0.91 0.00 0.00 3.85
281 282 2.073816 GAATACGTGTTGTGGGACCTG 58.926 52.381 0.91 0.00 0.00 4.00
282 283 0.321298 ATACGTGTTGTGGGACCTGC 60.321 55.000 0.00 0.00 0.00 4.85
283 284 1.404479 TACGTGTTGTGGGACCTGCT 61.404 55.000 0.00 0.00 0.00 4.24
284 285 2.253758 CGTGTTGTGGGACCTGCTG 61.254 63.158 0.00 0.00 0.00 4.41
285 286 1.898574 GTGTTGTGGGACCTGCTGG 60.899 63.158 8.29 8.29 39.83 4.85
295 296 4.379243 CCTGCTGGTCGGCGACTT 62.379 66.667 35.42 0.00 32.47 3.01
296 297 3.114616 CTGCTGGTCGGCGACTTG 61.115 66.667 35.42 27.67 32.47 3.16
297 298 3.865929 CTGCTGGTCGGCGACTTGT 62.866 63.158 35.42 0.00 32.47 3.16
298 299 2.260434 GCTGGTCGGCGACTTGTA 59.740 61.111 35.42 19.79 32.47 2.41
299 300 2.092882 GCTGGTCGGCGACTTGTAC 61.093 63.158 35.42 20.92 32.47 2.90
300 301 1.287815 CTGGTCGGCGACTTGTACA 59.712 57.895 35.42 24.01 32.47 2.90
301 302 0.319211 CTGGTCGGCGACTTGTACAA 60.319 55.000 35.42 8.28 32.47 2.41
302 303 0.104487 TGGTCGGCGACTTGTACAAA 59.896 50.000 35.42 11.48 32.47 2.83
303 304 1.219646 GGTCGGCGACTTGTACAAAA 58.780 50.000 35.42 0.00 32.47 2.44
304 305 1.193874 GGTCGGCGACTTGTACAAAAG 59.806 52.381 35.42 1.05 32.47 2.27
305 306 0.863144 TCGGCGACTTGTACAAAAGC 59.137 50.000 4.99 14.04 0.00 3.51
306 307 0.584396 CGGCGACTTGTACAAAAGCA 59.416 50.000 22.54 0.00 0.00 3.91
307 308 1.003331 CGGCGACTTGTACAAAAGCAA 60.003 47.619 22.54 0.00 0.00 3.91
308 309 2.650608 GGCGACTTGTACAAAAGCAAG 58.349 47.619 22.54 9.40 45.33 4.01
315 316 5.751243 CTTGTACAAAAGCAAGTACTGGT 57.249 39.130 10.03 0.00 40.84 4.00
316 317 5.744666 TTGTACAAAAGCAAGTACTGGTC 57.255 39.130 5.64 0.00 40.84 4.02
317 318 4.771903 TGTACAAAAGCAAGTACTGGTCA 58.228 39.130 0.00 0.00 40.84 4.02
318 319 5.186942 TGTACAAAAGCAAGTACTGGTCAA 58.813 37.500 0.00 0.00 40.84 3.18
319 320 5.648526 TGTACAAAAGCAAGTACTGGTCAAA 59.351 36.000 0.00 0.00 40.84 2.69
320 321 5.852282 ACAAAAGCAAGTACTGGTCAAAT 57.148 34.783 0.00 0.00 33.58 2.32
321 322 6.952773 ACAAAAGCAAGTACTGGTCAAATA 57.047 33.333 0.00 0.00 33.58 1.40
322 323 6.735130 ACAAAAGCAAGTACTGGTCAAATAC 58.265 36.000 0.00 0.00 33.58 1.89
339 340 9.800433 GGTCAAATACCTCTAAGTAGTTTACTC 57.200 37.037 0.00 0.00 45.75 2.59
340 341 9.800433 GTCAAATACCTCTAAGTAGTTTACTCC 57.200 37.037 0.00 0.00 38.26 3.85
341 342 8.975295 TCAAATACCTCTAAGTAGTTTACTCCC 58.025 37.037 0.00 0.00 38.26 4.30
342 343 8.979534 CAAATACCTCTAAGTAGTTTACTCCCT 58.020 37.037 0.00 0.00 38.26 4.20
343 344 8.765488 AATACCTCTAAGTAGTTTACTCCCTC 57.235 38.462 0.00 0.00 38.26 4.30
344 345 5.517924 ACCTCTAAGTAGTTTACTCCCTCC 58.482 45.833 0.00 0.00 38.26 4.30
345 346 4.579753 CCTCTAAGTAGTTTACTCCCTCCG 59.420 50.000 0.00 0.00 38.26 4.63
346 347 5.184892 TCTAAGTAGTTTACTCCCTCCGT 57.815 43.478 0.00 0.00 38.26 4.69
347 348 6.313519 TCTAAGTAGTTTACTCCCTCCGTA 57.686 41.667 0.00 0.00 38.26 4.02
348 349 6.721318 TCTAAGTAGTTTACTCCCTCCGTAA 58.279 40.000 0.00 0.00 38.26 3.18
349 350 7.175104 TCTAAGTAGTTTACTCCCTCCGTAAA 58.825 38.462 0.00 0.00 38.26 2.01
360 361 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
361 362 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
362 363 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
363 364 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
364 365 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
365 366 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
366 367 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
444 445 3.118905 ACTTGAGAAGAAGACCAGCAC 57.881 47.619 0.00 0.00 0.00 4.40
476 477 5.067273 TCCATTTGAAAATACAGTGGACGT 58.933 37.500 0.00 0.00 34.19 4.34
477 478 6.231951 TCCATTTGAAAATACAGTGGACGTA 58.768 36.000 0.00 0.00 34.19 3.57
478 479 6.148150 TCCATTTGAAAATACAGTGGACGTAC 59.852 38.462 0.00 0.00 34.19 3.67
479 480 5.579384 TTTGAAAATACAGTGGACGTACG 57.421 39.130 15.01 15.01 0.00 3.67
484 490 2.900122 TACAGTGGACGTACGCTTAC 57.100 50.000 12.19 11.47 0.00 2.34
529 535 0.673956 TACACGCGCAAAAGGGCATA 60.674 50.000 5.73 0.00 0.00 3.14
544 550 3.910627 AGGGCATAAGATCGATAACCCTT 59.089 43.478 11.55 0.00 44.07 3.95
672 692 3.684788 CACCACACAACATTCTAGTAGCC 59.315 47.826 0.00 0.00 0.00 3.93
674 694 3.935203 CCACACAACATTCTAGTAGCCAG 59.065 47.826 0.00 0.00 0.00 4.85
675 695 4.563580 CCACACAACATTCTAGTAGCCAGT 60.564 45.833 0.00 0.00 0.00 4.00
697 719 3.745723 GGGGGAGCTTTTTGTCAGA 57.254 52.632 0.00 0.00 0.00 3.27
698 720 1.995376 GGGGGAGCTTTTTGTCAGAA 58.005 50.000 0.00 0.00 0.00 3.02
699 721 1.889170 GGGGGAGCTTTTTGTCAGAAG 59.111 52.381 0.00 0.00 0.00 2.85
700 722 1.270826 GGGGAGCTTTTTGTCAGAAGC 59.729 52.381 12.62 12.62 46.57 3.86
704 726 2.322371 GCTTTTTGTCAGAAGCGGAG 57.678 50.000 7.11 0.00 38.89 4.63
707 729 2.631160 TTTTGTCAGAAGCGGAGGAA 57.369 45.000 0.00 0.00 0.00 3.36
808 847 1.306141 TCAACCGGAGATGGAGCCT 60.306 57.895 9.46 0.00 0.00 4.58
811 850 4.247380 CCGGAGATGGAGCCTGGC 62.247 72.222 11.65 11.65 0.00 4.85
896 937 1.978454 AGCCAGCAAGCTCATAATCC 58.022 50.000 0.00 0.00 39.48 3.01
897 938 0.957362 GCCAGCAAGCTCATAATCCC 59.043 55.000 0.00 0.00 0.00 3.85
898 939 1.751733 GCCAGCAAGCTCATAATCCCA 60.752 52.381 0.00 0.00 0.00 4.37
899 940 1.952296 CCAGCAAGCTCATAATCCCAC 59.048 52.381 0.00 0.00 0.00 4.61
900 941 2.422519 CCAGCAAGCTCATAATCCCACT 60.423 50.000 0.00 0.00 0.00 4.00
901 942 2.617308 CAGCAAGCTCATAATCCCACTG 59.383 50.000 0.00 0.00 0.00 3.66
902 943 1.336125 GCAAGCTCATAATCCCACTGC 59.664 52.381 0.00 0.00 0.00 4.40
903 944 2.928334 CAAGCTCATAATCCCACTGCT 58.072 47.619 0.00 0.00 0.00 4.24
929 970 2.091541 CGTAGCCACACCCATCAAATT 58.908 47.619 0.00 0.00 0.00 1.82
930 971 3.275143 CGTAGCCACACCCATCAAATTA 58.725 45.455 0.00 0.00 0.00 1.40
931 972 3.692101 CGTAGCCACACCCATCAAATTAA 59.308 43.478 0.00 0.00 0.00 1.40
932 973 4.338118 CGTAGCCACACCCATCAAATTAAT 59.662 41.667 0.00 0.00 0.00 1.40
964 1005 8.973835 AATCGTAGTAGCTAAATTAGATCAGC 57.026 34.615 3.88 0.00 0.00 4.26
965 1006 7.506328 TCGTAGTAGCTAAATTAGATCAGCA 57.494 36.000 3.88 0.00 36.47 4.41
970 1011 8.430801 AGTAGCTAAATTAGATCAGCAAGTTG 57.569 34.615 3.88 0.00 36.47 3.16
976 1038 9.383519 CTAAATTAGATCAGCAAGTTGGAGTAA 57.616 33.333 4.75 0.00 0.00 2.24
984 1047 9.092876 GATCAGCAAGTTGGAGTAATATATAGC 57.907 37.037 4.75 0.00 0.00 2.97
985 1048 7.962441 TCAGCAAGTTGGAGTAATATATAGCA 58.038 34.615 4.75 0.00 0.00 3.49
992 1055 7.181125 AGTTGGAGTAATATATAGCAAGGGAGG 59.819 40.741 0.00 0.00 0.00 4.30
993 1056 5.964477 TGGAGTAATATATAGCAAGGGAGGG 59.036 44.000 0.00 0.00 0.00 4.30
994 1057 5.163290 GGAGTAATATATAGCAAGGGAGGGC 60.163 48.000 0.00 0.00 0.00 5.19
995 1058 3.914426 AATATATAGCAAGGGAGGGCG 57.086 47.619 0.00 0.00 34.54 6.13
996 1059 0.902531 TATATAGCAAGGGAGGGCGC 59.097 55.000 0.00 0.00 34.54 6.53
997 1060 2.172483 ATATAGCAAGGGAGGGCGCG 62.172 60.000 0.00 0.00 34.54 6.86
1290 1357 0.299895 CACGCACGCTTCATCTCATC 59.700 55.000 0.00 0.00 0.00 2.92
1292 1359 1.405463 ACGCACGCTTCATCTCATCTA 59.595 47.619 0.00 0.00 0.00 1.98
1294 1361 2.407696 CGCACGCTTCATCTCATCTATG 59.592 50.000 0.00 0.00 0.00 2.23
1339 1424 2.419297 GCAAGTGGCTGTAGTAGATGCT 60.419 50.000 0.00 0.00 40.25 3.79
1357 1442 2.817844 TGCTCACGTACTGTATGACTGT 59.182 45.455 13.69 0.00 34.59 3.55
1643 1735 2.485124 GCAGATGCAGCTACAGGAGAAT 60.485 50.000 3.06 0.00 41.59 2.40
1680 1772 4.794199 AGCAGGCGATGATGATGG 57.206 55.556 0.00 0.00 0.00 3.51
1681 1773 1.600076 AGCAGGCGATGATGATGGC 60.600 57.895 0.00 0.00 32.73 4.40
1722 1814 4.082523 ACCAGGCCGTGATCACCG 62.083 66.667 20.03 14.58 0.00 4.94
2010 2110 5.823045 GCCTGCAGGTTAATTTCAGTACTAT 59.177 40.000 32.81 0.00 37.57 2.12
2011 2111 6.990349 GCCTGCAGGTTAATTTCAGTACTATA 59.010 38.462 32.81 0.00 37.57 1.31
2056 2156 2.094442 GCGGTGATAGCTAGGAAGGATC 60.094 54.545 0.00 0.00 0.00 3.36
2057 2157 3.157881 CGGTGATAGCTAGGAAGGATCA 58.842 50.000 0.00 0.00 0.00 2.92
2058 2158 3.766591 CGGTGATAGCTAGGAAGGATCAT 59.233 47.826 0.00 0.00 0.00 2.45
2059 2159 4.381398 CGGTGATAGCTAGGAAGGATCATG 60.381 50.000 0.00 0.00 0.00 3.07
2111 2211 6.459298 CCAATAGTTCTTCTTCATGCATGTCC 60.459 42.308 25.43 6.58 0.00 4.02
2127 2227 2.674954 TGTCCCGTGTACATGTTTACG 58.325 47.619 20.91 20.91 36.39 3.18
2128 2228 2.035704 TGTCCCGTGTACATGTTTACGT 59.964 45.455 23.85 0.00 34.96 3.57
2184 2293 3.395210 CAGGTGCACTGTACCAACA 57.605 52.632 17.98 0.00 42.42 3.33
2191 2300 3.058914 GTGCACTGTACCAACATCTTCAC 60.059 47.826 10.32 0.00 34.37 3.18
2266 2386 2.440539 TTTGGTCTCGCTTCTCAGTC 57.559 50.000 0.00 0.00 0.00 3.51
2267 2387 1.328279 TTGGTCTCGCTTCTCAGTCA 58.672 50.000 0.00 0.00 0.00 3.41
2268 2388 0.884514 TGGTCTCGCTTCTCAGTCAG 59.115 55.000 0.00 0.00 0.00 3.51
2269 2389 0.885196 GGTCTCGCTTCTCAGTCAGT 59.115 55.000 0.00 0.00 0.00 3.41
2293 2413 6.361748 GTCAATCAAGCACATTTTCTTCAGTC 59.638 38.462 0.00 0.00 0.00 3.51
2294 2414 4.472691 TCAAGCACATTTTCTTCAGTCG 57.527 40.909 0.00 0.00 0.00 4.18
2327 2447 1.832912 CAGCAGATCCCTACCCACC 59.167 63.158 0.00 0.00 0.00 4.61
2350 2470 4.440880 TGGCAATATTTTATGCACCTTGC 58.559 39.130 0.00 0.00 44.32 4.01
2404 2526 5.414454 GCACACCTATCTTCACAATTGGTTA 59.586 40.000 10.83 0.00 31.14 2.85
2408 2530 7.888021 ACACCTATCTTCACAATTGGTTATCAA 59.112 33.333 10.83 0.00 40.01 2.57
2435 2557 6.530181 CGTACACATAGTTACTCAATGCTTGA 59.470 38.462 0.00 0.00 38.17 3.02
2442 2564 2.936919 ACTCAATGCTTGACAGTGGA 57.063 45.000 0.00 0.00 44.47 4.02
2443 2565 3.430042 ACTCAATGCTTGACAGTGGAT 57.570 42.857 0.00 0.00 44.47 3.41
2444 2566 3.759581 ACTCAATGCTTGACAGTGGATT 58.240 40.909 0.00 0.00 44.47 3.01
2445 2567 4.147321 ACTCAATGCTTGACAGTGGATTT 58.853 39.130 0.00 0.00 44.47 2.17
2446 2568 5.316167 ACTCAATGCTTGACAGTGGATTTA 58.684 37.500 0.00 0.00 44.47 1.40
2447 2569 5.948162 ACTCAATGCTTGACAGTGGATTTAT 59.052 36.000 0.00 0.00 44.47 1.40
2448 2570 6.094603 ACTCAATGCTTGACAGTGGATTTATC 59.905 38.462 0.00 0.00 44.47 1.75
2481 2603 2.093306 TATTATGATCCAAGCGGCCG 57.907 50.000 24.05 24.05 0.00 6.13
2500 2622 4.142249 GGCCGTATGCTTAATGTTTTCCTT 60.142 41.667 0.00 0.00 40.92 3.36
2555 2677 6.925610 GTTGCTCAACTCACCATATATGAA 57.074 37.500 14.54 0.00 38.25 2.57
2556 2678 7.502120 GTTGCTCAACTCACCATATATGAAT 57.498 36.000 14.54 0.00 38.25 2.57
2557 2679 7.934457 GTTGCTCAACTCACCATATATGAATT 58.066 34.615 14.54 0.00 38.25 2.17
2558 2680 7.734924 TGCTCAACTCACCATATATGAATTC 57.265 36.000 14.54 0.00 0.00 2.17
2559 2681 7.281841 TGCTCAACTCACCATATATGAATTCA 58.718 34.615 14.54 11.26 0.00 2.57
2560 2682 7.443272 TGCTCAACTCACCATATATGAATTCAG 59.557 37.037 14.54 1.46 0.00 3.02
2576 3168 3.710326 TTCAGTTGCGATACGAGCTAT 57.290 42.857 0.00 0.00 35.28 2.97
2585 3663 5.103687 TGCGATACGAGCTATTTGTTGTAA 58.896 37.500 0.00 0.00 35.28 2.41
2594 3672 4.218417 AGCTATTTGTTGTAAGGGTTGCTG 59.782 41.667 0.00 0.00 0.00 4.41
2610 3688 1.067060 TGCTGTTGCGATACGAGCTAT 59.933 47.619 0.00 0.00 43.34 2.97
2612 3690 2.540101 GCTGTTGCGATACGAGCTATTT 59.460 45.455 0.00 0.00 35.28 1.40
2613 3691 3.602491 GCTGTTGCGATACGAGCTATTTG 60.602 47.826 0.00 0.00 35.28 2.32
2615 3693 3.120792 GTTGCGATACGAGCTATTTGGA 58.879 45.455 0.00 0.00 35.28 3.53
2617 3695 3.381045 TGCGATACGAGCTATTTGGAAG 58.619 45.455 0.00 0.00 35.28 3.46
2618 3696 3.181479 TGCGATACGAGCTATTTGGAAGT 60.181 43.478 0.00 0.00 35.28 3.01
2619 3697 3.182572 GCGATACGAGCTATTTGGAAGTG 59.817 47.826 0.00 0.00 0.00 3.16
2621 3699 2.472695 ACGAGCTATTTGGAAGTGCA 57.527 45.000 0.00 0.00 0.00 4.57
2624 3702 3.002791 CGAGCTATTTGGAAGTGCAGAA 58.997 45.455 0.00 0.00 0.00 3.02
2625 3703 3.436704 CGAGCTATTTGGAAGTGCAGAAA 59.563 43.478 0.00 0.00 0.00 2.52
2626 3704 4.670221 CGAGCTATTTGGAAGTGCAGAAAC 60.670 45.833 0.00 0.00 0.00 2.78
2652 3785 4.189231 GCTTGCTTTCGTATCTTCCCTTA 58.811 43.478 0.00 0.00 0.00 2.69
2679 3812 7.614192 TGATCCTACTAGTGTACTTGATCAACA 59.386 37.037 3.38 0.00 34.16 3.33
2680 3813 7.154435 TCCTACTAGTGTACTTGATCAACAC 57.846 40.000 17.67 17.67 43.02 3.32
2681 3814 6.717997 TCCTACTAGTGTACTTGATCAACACA 59.282 38.462 24.13 18.35 44.68 3.72
2682 3815 7.231925 TCCTACTAGTGTACTTGATCAACACAA 59.768 37.037 24.13 9.52 44.68 3.33
2683 3816 7.542477 CCTACTAGTGTACTTGATCAACACAAG 59.458 40.741 24.13 17.52 44.68 3.16
2688 3821 7.220030 AGTGTACTTGATCAACACAAGATTCT 58.780 34.615 24.13 12.72 44.68 2.40
2690 3823 7.800380 GTGTACTTGATCAACACAAGATTCTTG 59.200 37.037 22.00 22.00 44.92 3.02
2691 3824 6.323203 ACTTGATCAACACAAGATTCTTGG 57.677 37.500 25.94 18.06 44.92 3.61
2693 3826 5.947228 TGATCAACACAAGATTCTTGGTC 57.053 39.130 25.94 15.12 0.00 4.02
2695 3828 5.471116 TGATCAACACAAGATTCTTGGTCTG 59.529 40.000 25.94 18.51 0.00 3.51
2696 3829 4.136796 TCAACACAAGATTCTTGGTCTGG 58.863 43.478 25.94 13.60 0.00 3.86
2697 3830 2.508526 ACACAAGATTCTTGGTCTGGC 58.491 47.619 25.94 0.00 0.00 4.85
2701 3844 3.760684 ACAAGATTCTTGGTCTGGCATTC 59.239 43.478 25.94 0.00 0.00 2.67
2721 3864 2.695147 TCAGAGAAGAGGAATATGCGCA 59.305 45.455 14.96 14.96 0.00 6.09
2748 3891 5.849604 GCAAGTTAAACTAGTAAAACTGCCG 59.150 40.000 18.50 13.04 32.69 5.69
2821 3964 5.810525 ACGCTGCTGTATTATCAATTTCAC 58.189 37.500 0.00 0.00 0.00 3.18
2824 3967 5.904080 GCTGCTGTATTATCAATTTCACGAC 59.096 40.000 0.00 0.00 0.00 4.34
2825 3968 6.031549 TGCTGTATTATCAATTTCACGACG 57.968 37.500 0.00 0.00 0.00 5.12
2829 3972 7.850982 GCTGTATTATCAATTTCACGACGAATT 59.149 33.333 0.00 0.00 32.32 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.044305 GCAAACGGCGTCAGAGCT 61.044 61.111 15.17 0.00 37.29 4.09
1 2 4.090057 GGCAAACGGCGTCAGAGC 62.090 66.667 15.17 14.84 46.16 4.09
2 3 2.664851 TGGCAAACGGCGTCAGAG 60.665 61.111 15.17 4.71 46.16 3.35
3 4 2.664851 CTGGCAAACGGCGTCAGA 60.665 61.111 15.17 0.00 46.16 3.27
4 5 3.726517 CCTGGCAAACGGCGTCAG 61.727 66.667 15.17 16.17 46.16 3.51
28 29 4.849310 CATACACGTGGGGCCCGG 62.849 72.222 21.57 15.28 0.00 5.73
32 33 4.460683 TCGGCATACACGTGGGGC 62.461 66.667 21.57 18.79 0.00 5.80
33 34 2.510691 GTCGGCATACACGTGGGG 60.511 66.667 21.57 9.70 0.00 4.96
34 35 2.883730 CGTCGGCATACACGTGGG 60.884 66.667 21.57 10.08 0.00 4.61
35 36 2.883730 CCGTCGGCATACACGTGG 60.884 66.667 21.57 2.89 34.06 4.94
57 58 1.585521 CAGCTACCGTCGGCTTACG 60.586 63.158 12.28 4.67 46.11 3.18
58 59 0.525029 GACAGCTACCGTCGGCTTAC 60.525 60.000 12.28 0.00 36.59 2.34
59 60 1.805254 GACAGCTACCGTCGGCTTA 59.195 57.895 12.28 0.00 36.59 3.09
60 61 2.572284 GACAGCTACCGTCGGCTT 59.428 61.111 12.28 0.00 36.59 4.35
65 66 2.056481 ATACGCCGACAGCTACCGTC 62.056 60.000 0.00 0.00 40.39 4.79
66 67 0.815213 TATACGCCGACAGCTACCGT 60.815 55.000 0.00 4.40 40.39 4.83
67 68 0.520404 ATATACGCCGACAGCTACCG 59.480 55.000 0.00 0.00 40.39 4.02
68 69 1.268899 ACATATACGCCGACAGCTACC 59.731 52.381 0.00 0.00 40.39 3.18
69 70 2.701073 ACATATACGCCGACAGCTAC 57.299 50.000 0.00 0.00 40.39 3.58
70 71 2.161012 GCTACATATACGCCGACAGCTA 59.839 50.000 0.00 0.00 40.39 3.32
71 72 1.068472 GCTACATATACGCCGACAGCT 60.068 52.381 0.00 0.00 40.39 4.24
72 73 1.068472 AGCTACATATACGCCGACAGC 60.068 52.381 0.00 0.00 38.52 4.40
73 74 2.991434 AGCTACATATACGCCGACAG 57.009 50.000 0.00 0.00 0.00 3.51
74 75 2.745821 CCTAGCTACATATACGCCGACA 59.254 50.000 0.00 0.00 0.00 4.35
75 76 2.477525 GCCTAGCTACATATACGCCGAC 60.478 54.545 0.00 0.00 0.00 4.79
76 77 1.741706 GCCTAGCTACATATACGCCGA 59.258 52.381 0.00 0.00 0.00 5.54
77 78 1.202268 GGCCTAGCTACATATACGCCG 60.202 57.143 0.00 0.00 0.00 6.46
78 79 1.202268 CGGCCTAGCTACATATACGCC 60.202 57.143 0.00 0.00 0.00 5.68
79 80 1.741706 TCGGCCTAGCTACATATACGC 59.258 52.381 0.00 0.00 0.00 4.42
80 81 2.222976 CGTCGGCCTAGCTACATATACG 60.223 54.545 0.00 0.00 0.00 3.06
81 82 2.097142 CCGTCGGCCTAGCTACATATAC 59.903 54.545 0.00 0.00 0.00 1.47
82 83 2.362736 CCGTCGGCCTAGCTACATATA 58.637 52.381 0.00 0.00 0.00 0.86
83 84 1.174783 CCGTCGGCCTAGCTACATAT 58.825 55.000 0.00 0.00 0.00 1.78
84 85 1.521450 GCCGTCGGCCTAGCTACATA 61.521 60.000 26.23 0.00 44.06 2.29
85 86 2.857744 GCCGTCGGCCTAGCTACAT 61.858 63.158 26.23 0.00 44.06 2.29
86 87 3.524606 GCCGTCGGCCTAGCTACA 61.525 66.667 26.23 0.00 44.06 2.74
103 104 0.380378 CACCCGTCGGCATAAAATGG 59.620 55.000 5.50 0.00 0.00 3.16
104 105 0.248458 GCACCCGTCGGCATAAAATG 60.248 55.000 5.50 0.00 0.00 2.32
105 106 1.381165 GGCACCCGTCGGCATAAAAT 61.381 55.000 5.50 0.00 0.00 1.82
106 107 2.041686 GGCACCCGTCGGCATAAAA 61.042 57.895 5.50 0.00 0.00 1.52
107 108 2.437002 GGCACCCGTCGGCATAAA 60.437 61.111 5.50 0.00 0.00 1.40
108 109 4.823419 CGGCACCCGTCGGCATAA 62.823 66.667 5.50 0.00 42.73 1.90
123 124 1.658717 CGCAGAGATAAGCCGACGG 60.659 63.158 10.29 10.29 0.00 4.79
124 125 0.306840 TACGCAGAGATAAGCCGACG 59.693 55.000 0.00 0.00 0.00 5.12
125 126 1.926827 GCTACGCAGAGATAAGCCGAC 60.927 57.143 0.00 0.00 0.00 4.79
126 127 0.311165 GCTACGCAGAGATAAGCCGA 59.689 55.000 0.00 0.00 0.00 5.54
127 128 0.664767 GGCTACGCAGAGATAAGCCG 60.665 60.000 0.00 0.00 42.98 5.52
128 129 3.202923 GGCTACGCAGAGATAAGCC 57.797 57.895 0.00 0.00 45.37 4.35
129 130 0.664767 CGGGCTACGCAGAGATAAGC 60.665 60.000 0.00 0.00 34.82 3.09
130 131 0.952280 TCGGGCTACGCAGAGATAAG 59.048 55.000 0.00 0.00 43.86 1.73
131 132 0.666913 GTCGGGCTACGCAGAGATAA 59.333 55.000 0.00 0.00 43.86 1.75
132 133 1.504647 CGTCGGGCTACGCAGAGATA 61.505 60.000 0.37 0.00 43.86 1.98
133 134 2.835705 CGTCGGGCTACGCAGAGAT 61.836 63.158 0.37 0.00 43.86 2.75
134 135 3.506096 CGTCGGGCTACGCAGAGA 61.506 66.667 0.37 0.00 43.86 3.10
135 136 4.554363 CCGTCGGGCTACGCAGAG 62.554 72.222 2.34 0.00 43.86 3.35
145 146 2.812178 CGTACAAAGGCCGTCGGG 60.812 66.667 14.38 0.00 0.00 5.14
146 147 3.484547 GCGTACAAAGGCCGTCGG 61.485 66.667 6.99 6.99 0.00 4.79
147 148 3.484547 GGCGTACAAAGGCCGTCG 61.485 66.667 0.00 0.00 45.99 5.12
152 153 3.484547 CCGTCGGCGTACAAAGGC 61.485 66.667 9.28 0.00 36.15 4.35
153 154 3.484547 GCCGTCGGCGTACAAAGG 61.485 66.667 22.50 0.00 39.62 3.11
163 164 4.760047 CCTGGTTCTGGCCGTCGG 62.760 72.222 6.99 6.99 0.00 4.79
164 165 3.530910 AACCTGGTTCTGGCCGTCG 62.531 63.158 6.18 0.00 0.00 5.12
165 166 1.966451 CAACCTGGTTCTGGCCGTC 60.966 63.158 9.62 0.00 0.00 4.79
166 167 2.113139 CAACCTGGTTCTGGCCGT 59.887 61.111 9.62 0.00 0.00 5.68
167 168 1.966451 GACAACCTGGTTCTGGCCG 60.966 63.158 9.62 0.00 0.00 6.13
168 169 1.966451 CGACAACCTGGTTCTGGCC 60.966 63.158 9.62 0.00 0.00 5.36
169 170 1.966451 CCGACAACCTGGTTCTGGC 60.966 63.158 9.62 1.05 0.00 4.85
170 171 1.966451 GCCGACAACCTGGTTCTGG 60.966 63.158 9.62 12.39 0.00 3.86
171 172 0.606401 ATGCCGACAACCTGGTTCTG 60.606 55.000 9.62 2.70 0.00 3.02
172 173 0.981183 TATGCCGACAACCTGGTTCT 59.019 50.000 9.62 0.00 0.00 3.01
173 174 1.940613 GATATGCCGACAACCTGGTTC 59.059 52.381 9.62 0.00 0.00 3.62
174 175 1.559682 AGATATGCCGACAACCTGGTT 59.440 47.619 6.18 6.18 0.00 3.67
175 176 1.139058 GAGATATGCCGACAACCTGGT 59.861 52.381 0.00 0.00 0.00 4.00
176 177 1.541233 GGAGATATGCCGACAACCTGG 60.541 57.143 0.00 0.00 0.00 4.45
177 178 1.871080 GGAGATATGCCGACAACCTG 58.129 55.000 0.00 0.00 0.00 4.00
186 187 0.036858 GGCTTCTCCGGAGATATGCC 60.037 60.000 35.99 35.99 39.52 4.40
187 188 3.523806 GGCTTCTCCGGAGATATGC 57.476 57.895 33.97 31.73 37.29 3.14
214 215 3.039202 GCCAGAACAATGCCGACGG 62.039 63.158 10.29 10.29 0.00 4.79
215 216 2.480555 GCCAGAACAATGCCGACG 59.519 61.111 0.00 0.00 0.00 5.12
216 217 2.877691 GGCCAGAACAATGCCGAC 59.122 61.111 0.00 0.00 35.08 4.79
219 220 2.877691 GACGGCCAGAACAATGCC 59.122 61.111 2.24 0.00 41.85 4.40
220 221 2.480555 CGACGGCCAGAACAATGC 59.519 61.111 2.24 0.00 0.00 3.56
221 222 2.398554 CCCGACGGCCAGAACAATG 61.399 63.158 8.86 0.00 0.00 2.82
222 223 2.046314 CCCGACGGCCAGAACAAT 60.046 61.111 8.86 0.00 0.00 2.71
223 224 4.323477 CCCCGACGGCCAGAACAA 62.323 66.667 8.86 0.00 0.00 2.83
225 226 2.728435 ATACCCCGACGGCCAGAAC 61.728 63.158 8.86 0.00 33.26 3.01
226 227 2.364579 ATACCCCGACGGCCAGAA 60.365 61.111 8.86 0.00 33.26 3.02
227 228 3.151710 CATACCCCGACGGCCAGA 61.152 66.667 8.86 0.00 33.26 3.86
228 229 4.235762 CCATACCCCGACGGCCAG 62.236 72.222 8.86 1.45 33.26 4.85
239 240 1.339644 TACCGGAACAGGGCCATACC 61.340 60.000 9.46 0.73 35.02 2.73
240 241 0.106149 CTACCGGAACAGGGCCATAC 59.894 60.000 9.46 0.00 35.02 2.39
241 242 0.325860 ACTACCGGAACAGGGCCATA 60.326 55.000 9.46 0.00 35.02 2.74
242 243 1.615424 ACTACCGGAACAGGGCCAT 60.615 57.895 9.46 0.00 35.02 4.40
243 244 2.203877 ACTACCGGAACAGGGCCA 60.204 61.111 9.46 0.00 35.02 5.36
244 245 1.833787 TTCACTACCGGAACAGGGCC 61.834 60.000 9.46 0.00 35.02 5.80
245 246 0.252197 ATTCACTACCGGAACAGGGC 59.748 55.000 9.46 0.00 35.02 5.19
246 247 2.480759 CGTATTCACTACCGGAACAGGG 60.481 54.545 9.46 2.97 35.02 4.45
247 248 2.165030 ACGTATTCACTACCGGAACAGG 59.835 50.000 9.46 0.00 37.30 4.00
248 249 3.176708 CACGTATTCACTACCGGAACAG 58.823 50.000 9.46 4.49 0.00 3.16
249 250 2.557924 ACACGTATTCACTACCGGAACA 59.442 45.455 9.46 0.00 0.00 3.18
250 251 3.221964 ACACGTATTCACTACCGGAAC 57.778 47.619 9.46 0.00 0.00 3.62
251 252 3.005684 ACAACACGTATTCACTACCGGAA 59.994 43.478 9.46 0.00 0.00 4.30
252 253 2.557924 ACAACACGTATTCACTACCGGA 59.442 45.455 9.46 0.00 0.00 5.14
253 254 2.664568 CACAACACGTATTCACTACCGG 59.335 50.000 0.00 0.00 0.00 5.28
254 255 2.664568 CCACAACACGTATTCACTACCG 59.335 50.000 0.00 0.00 0.00 4.02
255 256 2.997986 CCCACAACACGTATTCACTACC 59.002 50.000 0.00 0.00 0.00 3.18
256 257 3.676646 GTCCCACAACACGTATTCACTAC 59.323 47.826 0.00 0.00 0.00 2.73
257 258 3.306225 GGTCCCACAACACGTATTCACTA 60.306 47.826 0.00 0.00 0.00 2.74
258 259 2.549349 GGTCCCACAACACGTATTCACT 60.549 50.000 0.00 0.00 0.00 3.41
259 260 1.802365 GGTCCCACAACACGTATTCAC 59.198 52.381 0.00 0.00 0.00 3.18
260 261 1.695242 AGGTCCCACAACACGTATTCA 59.305 47.619 0.00 0.00 0.00 2.57
261 262 2.073816 CAGGTCCCACAACACGTATTC 58.926 52.381 0.00 0.00 0.00 1.75
262 263 1.880646 GCAGGTCCCACAACACGTATT 60.881 52.381 0.00 0.00 0.00 1.89
263 264 0.321298 GCAGGTCCCACAACACGTAT 60.321 55.000 0.00 0.00 0.00 3.06
264 265 1.070105 GCAGGTCCCACAACACGTA 59.930 57.895 0.00 0.00 0.00 3.57
265 266 2.203153 GCAGGTCCCACAACACGT 60.203 61.111 0.00 0.00 0.00 4.49
266 267 2.111043 AGCAGGTCCCACAACACG 59.889 61.111 0.00 0.00 0.00 4.49
267 268 1.898574 CCAGCAGGTCCCACAACAC 60.899 63.158 0.00 0.00 0.00 3.32
268 269 2.515398 CCAGCAGGTCCCACAACA 59.485 61.111 0.00 0.00 0.00 3.33
278 279 4.379243 AAGTCGCCGACCAGCAGG 62.379 66.667 14.60 0.00 42.21 4.85
279 280 2.486636 TACAAGTCGCCGACCAGCAG 62.487 60.000 14.60 2.15 32.18 4.24
280 281 2.566570 TACAAGTCGCCGACCAGCA 61.567 57.895 14.60 0.00 32.18 4.41
281 282 2.092882 GTACAAGTCGCCGACCAGC 61.093 63.158 14.60 0.00 32.18 4.85
282 283 0.319211 TTGTACAAGTCGCCGACCAG 60.319 55.000 14.60 9.31 32.18 4.00
283 284 0.104487 TTTGTACAAGTCGCCGACCA 59.896 50.000 14.60 0.88 32.18 4.02
284 285 1.193874 CTTTTGTACAAGTCGCCGACC 59.806 52.381 14.60 0.00 32.18 4.79
285 286 1.398071 GCTTTTGTACAAGTCGCCGAC 60.398 52.381 9.71 9.71 0.00 4.79
286 287 0.863144 GCTTTTGTACAAGTCGCCGA 59.137 50.000 8.56 0.00 0.00 5.54
287 288 0.584396 TGCTTTTGTACAAGTCGCCG 59.416 50.000 8.56 0.00 0.00 6.46
288 289 2.650608 CTTGCTTTTGTACAAGTCGCC 58.349 47.619 8.56 0.00 38.75 5.54
293 294 5.295787 TGACCAGTACTTGCTTTTGTACAAG 59.704 40.000 8.56 0.00 46.91 3.16
294 295 5.186942 TGACCAGTACTTGCTTTTGTACAA 58.813 37.500 3.59 3.59 40.84 2.41
295 296 4.771903 TGACCAGTACTTGCTTTTGTACA 58.228 39.130 0.00 0.00 40.84 2.90
296 297 5.744666 TTGACCAGTACTTGCTTTTGTAC 57.255 39.130 0.00 0.00 39.26 2.90
297 298 6.952773 ATTTGACCAGTACTTGCTTTTGTA 57.047 33.333 0.00 0.00 0.00 2.41
298 299 5.852282 ATTTGACCAGTACTTGCTTTTGT 57.148 34.783 0.00 0.00 0.00 2.83
312 313 9.317827 AGTAAACTACTTAGAGGTATTTGACCA 57.682 33.333 0.00 0.00 43.30 4.02
313 314 9.800433 GAGTAAACTACTTAGAGGTATTTGACC 57.200 37.037 0.00 0.00 43.57 4.02
314 315 9.800433 GGAGTAAACTACTTAGAGGTATTTGAC 57.200 37.037 0.00 0.00 39.59 3.18
315 316 8.975295 GGGAGTAAACTACTTAGAGGTATTTGA 58.025 37.037 0.00 0.00 39.59 2.69
316 317 8.979534 AGGGAGTAAACTACTTAGAGGTATTTG 58.020 37.037 0.00 0.00 39.59 2.32
317 318 9.199645 GAGGGAGTAAACTACTTAGAGGTATTT 57.800 37.037 0.00 0.00 39.59 1.40
318 319 7.784073 GGAGGGAGTAAACTACTTAGAGGTATT 59.216 40.741 0.00 0.00 39.59 1.89
319 320 7.296856 GGAGGGAGTAAACTACTTAGAGGTAT 58.703 42.308 0.00 0.00 39.59 2.73
320 321 6.633583 CGGAGGGAGTAAACTACTTAGAGGTA 60.634 46.154 0.00 0.00 39.59 3.08
321 322 5.517924 GGAGGGAGTAAACTACTTAGAGGT 58.482 45.833 0.00 0.00 39.59 3.85
322 323 4.579753 CGGAGGGAGTAAACTACTTAGAGG 59.420 50.000 0.00 0.00 39.59 3.69
323 324 5.192176 ACGGAGGGAGTAAACTACTTAGAG 58.808 45.833 0.00 0.00 39.59 2.43
324 325 5.184892 ACGGAGGGAGTAAACTACTTAGA 57.815 43.478 0.00 0.00 39.59 2.10
325 326 7.396540 TTTACGGAGGGAGTAAACTACTTAG 57.603 40.000 0.00 0.00 39.59 2.18
334 335 9.866655 TCTTATATTAGTTTACGGAGGGAGTAA 57.133 33.333 0.00 0.00 32.84 2.24
335 336 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
336 337 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
337 338 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
338 339 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
339 340 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
340 341 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
403 404 9.750783 TCAAGTATAGTACTTCCTCTGTAAACT 57.249 33.333 0.00 0.00 45.38 2.66
405 406 9.970553 TCTCAAGTATAGTACTTCCTCTGTAAA 57.029 33.333 0.00 0.00 45.38 2.01
406 407 9.970553 TTCTCAAGTATAGTACTTCCTCTGTAA 57.029 33.333 0.00 0.00 45.38 2.41
407 408 9.616156 CTTCTCAAGTATAGTACTTCCTCTGTA 57.384 37.037 0.00 0.00 45.38 2.74
408 409 8.330247 TCTTCTCAAGTATAGTACTTCCTCTGT 58.670 37.037 0.00 0.00 45.38 3.41
409 410 8.740123 TCTTCTCAAGTATAGTACTTCCTCTG 57.260 38.462 0.00 0.00 45.38 3.35
410 411 9.403583 CTTCTTCTCAAGTATAGTACTTCCTCT 57.596 37.037 0.00 0.00 45.38 3.69
411 412 9.398538 TCTTCTTCTCAAGTATAGTACTTCCTC 57.601 37.037 0.00 0.00 45.38 3.71
412 413 9.181061 GTCTTCTTCTCAAGTATAGTACTTCCT 57.819 37.037 0.00 0.00 45.38 3.36
413 414 8.407832 GGTCTTCTTCTCAAGTATAGTACTTCC 58.592 40.741 0.00 0.00 45.38 3.46
414 415 8.958506 TGGTCTTCTTCTCAAGTATAGTACTTC 58.041 37.037 0.00 0.00 45.38 3.01
416 417 7.067737 GCTGGTCTTCTTCTCAAGTATAGTACT 59.932 40.741 0.00 0.00 41.73 2.73
417 418 7.148052 TGCTGGTCTTCTTCTCAAGTATAGTAC 60.148 40.741 0.00 0.00 0.00 2.73
418 419 6.890268 TGCTGGTCTTCTTCTCAAGTATAGTA 59.110 38.462 0.00 0.00 0.00 1.82
419 420 5.717178 TGCTGGTCTTCTTCTCAAGTATAGT 59.283 40.000 0.00 0.00 0.00 2.12
420 421 6.039616 GTGCTGGTCTTCTTCTCAAGTATAG 58.960 44.000 0.00 0.00 0.00 1.31
421 422 5.105310 GGTGCTGGTCTTCTTCTCAAGTATA 60.105 44.000 0.00 0.00 0.00 1.47
422 423 4.323104 GGTGCTGGTCTTCTTCTCAAGTAT 60.323 45.833 0.00 0.00 0.00 2.12
444 445 7.284034 ACTGTATTTTCAAATGGAGATGCTAGG 59.716 37.037 0.00 0.00 0.00 3.02
476 477 6.072008 TGGTGTCAAATACTACTGTAAGCGTA 60.072 38.462 0.00 0.00 37.60 4.42
477 478 5.166398 GGTGTCAAATACTACTGTAAGCGT 58.834 41.667 0.00 0.00 37.60 5.07
478 479 5.061808 GTGGTGTCAAATACTACTGTAAGCG 59.938 44.000 0.00 0.00 37.60 4.68
479 480 5.929992 TGTGGTGTCAAATACTACTGTAAGC 59.070 40.000 0.00 0.00 37.60 3.09
484 490 4.304110 ACGTGTGGTGTCAAATACTACTG 58.696 43.478 0.00 0.00 31.66 2.74
529 535 7.821359 CACATATGATCAAGGGTTATCGATCTT 59.179 37.037 10.38 0.00 36.16 2.40
544 550 7.023171 TGATCAATCATCCCACATATGATCA 57.977 36.000 10.38 10.52 45.44 2.92
604 616 3.964411 AGCATCTTTACCCCACCTTTAC 58.036 45.455 0.00 0.00 0.00 2.01
697 719 7.036220 CGACATATAATATTCTTCCTCCGCTT 58.964 38.462 0.00 0.00 0.00 4.68
698 720 6.377429 TCGACATATAATATTCTTCCTCCGCT 59.623 38.462 0.00 0.00 0.00 5.52
699 721 6.561614 TCGACATATAATATTCTTCCTCCGC 58.438 40.000 0.00 0.00 0.00 5.54
811 850 1.969589 GCCATTTATACGGCCGGGG 60.970 63.158 31.76 18.40 42.82 5.73
891 932 2.039418 ACGCTATCAGCAGTGGGATTA 58.961 47.619 0.00 0.00 42.58 1.75
892 933 0.833287 ACGCTATCAGCAGTGGGATT 59.167 50.000 0.00 0.00 42.58 3.01
894 935 1.032794 CTACGCTATCAGCAGTGGGA 58.967 55.000 0.00 0.00 42.58 4.37
895 936 0.598680 GCTACGCTATCAGCAGTGGG 60.599 60.000 0.00 0.00 42.58 4.61
896 937 0.598680 GGCTACGCTATCAGCAGTGG 60.599 60.000 0.00 1.48 42.58 4.00
897 938 0.103026 TGGCTACGCTATCAGCAGTG 59.897 55.000 0.00 0.00 42.58 3.66
898 939 0.103208 GTGGCTACGCTATCAGCAGT 59.897 55.000 0.00 0.71 42.58 4.40
899 940 0.103026 TGTGGCTACGCTATCAGCAG 59.897 55.000 0.00 0.00 42.58 4.24
900 941 0.179111 GTGTGGCTACGCTATCAGCA 60.179 55.000 6.50 0.00 42.58 4.41
901 942 0.876342 GGTGTGGCTACGCTATCAGC 60.876 60.000 13.75 0.00 37.47 4.26
902 943 0.249489 GGGTGTGGCTACGCTATCAG 60.249 60.000 13.75 0.00 37.47 2.90
903 944 0.973496 TGGGTGTGGCTACGCTATCA 60.973 55.000 13.75 7.21 37.47 2.15
943 984 9.535878 AACTTGCTGATCTAATTTAGCTACTAC 57.464 33.333 0.00 0.00 37.10 2.73
948 989 6.418101 TCCAACTTGCTGATCTAATTTAGCT 58.582 36.000 0.00 0.00 37.10 3.32
958 999 9.092876 GCTATATATTACTCCAACTTGCTGATC 57.907 37.037 0.00 0.00 0.00 2.92
959 1000 8.597167 TGCTATATATTACTCCAACTTGCTGAT 58.403 33.333 0.00 0.00 0.00 2.90
960 1001 7.962441 TGCTATATATTACTCCAACTTGCTGA 58.038 34.615 0.00 0.00 0.00 4.26
961 1002 8.607441 TTGCTATATATTACTCCAACTTGCTG 57.393 34.615 0.00 0.00 0.00 4.41
962 1003 7.880195 CCTTGCTATATATTACTCCAACTTGCT 59.120 37.037 0.00 0.00 0.00 3.91
963 1004 7.119846 CCCTTGCTATATATTACTCCAACTTGC 59.880 40.741 0.00 0.00 0.00 4.01
964 1005 8.375506 TCCCTTGCTATATATTACTCCAACTTG 58.624 37.037 0.00 0.00 0.00 3.16
965 1006 8.506196 TCCCTTGCTATATATTACTCCAACTT 57.494 34.615 0.00 0.00 0.00 2.66
970 1011 5.163290 GCCCTCCCTTGCTATATATTACTCC 60.163 48.000 0.00 0.00 0.00 3.85
976 1038 1.486726 GCGCCCTCCCTTGCTATATAT 59.513 52.381 0.00 0.00 0.00 0.86
984 1047 4.473520 ATGACGCGCCCTCCCTTG 62.474 66.667 5.73 0.00 0.00 3.61
985 1048 4.473520 CATGACGCGCCCTCCCTT 62.474 66.667 5.73 0.00 0.00 3.95
997 1060 1.485838 CTGCTCATCGCGTCCATGAC 61.486 60.000 5.77 4.27 43.27 3.06
998 1061 1.227060 CTGCTCATCGCGTCCATGA 60.227 57.895 5.77 7.44 43.27 3.07
1290 1357 6.755607 TGTAGTAGACTGTACACGTCTCATAG 59.244 42.308 22.88 2.18 41.62 2.23
1292 1359 5.485620 TGTAGTAGACTGTACACGTCTCAT 58.514 41.667 22.88 17.20 41.62 2.90
1294 1361 4.928615 ACTGTAGTAGACTGTACACGTCTC 59.071 45.833 22.88 16.76 41.62 3.36
1339 1424 6.822170 AGAAGATACAGTCATACAGTACGTGA 59.178 38.462 0.00 0.00 0.00 4.35
1357 1442 1.153449 CCGCGCACCCAAGAAGATA 60.153 57.895 8.75 0.00 0.00 1.98
1643 1735 3.480679 CTGCTGCTGGTGGTGGTGA 62.481 63.158 0.00 0.00 0.00 4.02
1669 1761 2.171489 CTGCTGCGCCATCATCATCG 62.171 60.000 4.18 0.00 0.00 3.84
2010 2110 0.471022 TGATATCCCAGCGGCCAGTA 60.471 55.000 2.24 0.00 0.00 2.74
2011 2111 1.130054 ATGATATCCCAGCGGCCAGT 61.130 55.000 2.24 0.00 0.00 4.00
2111 2211 5.845433 GGTAAAAACGTAAACATGTACACGG 59.155 40.000 26.42 14.35 38.67 4.94
2127 2227 3.119137 GGCTCATGGTCATGGGTAAAAAC 60.119 47.826 11.88 0.00 41.32 2.43
2128 2228 3.096092 GGCTCATGGTCATGGGTAAAAA 58.904 45.455 11.88 0.00 41.32 1.94
2182 2285 5.308014 TGTTGACATGCTAAGTGAAGATGT 58.692 37.500 0.00 0.00 0.00 3.06
2184 2293 6.569226 GCTTTGTTGACATGCTAAGTGAAGAT 60.569 38.462 0.00 0.00 0.00 2.40
2191 2300 4.394300 AGCTAGCTTTGTTGACATGCTAAG 59.606 41.667 12.68 11.92 37.61 2.18
2266 2386 6.210796 TGAAGAAAATGTGCTTGATTGACTG 58.789 36.000 0.00 0.00 0.00 3.51
2267 2387 6.040166 ACTGAAGAAAATGTGCTTGATTGACT 59.960 34.615 0.00 0.00 0.00 3.41
2268 2388 6.211515 ACTGAAGAAAATGTGCTTGATTGAC 58.788 36.000 0.00 0.00 0.00 3.18
2269 2389 6.395426 ACTGAAGAAAATGTGCTTGATTGA 57.605 33.333 0.00 0.00 0.00 2.57
2293 2413 0.453950 GCTGCACTGCTTGTTCATCG 60.454 55.000 1.98 0.00 0.00 3.84
2294 2414 0.594602 TGCTGCACTGCTTGTTCATC 59.405 50.000 0.00 0.00 0.00 2.92
2327 2447 4.508861 GCAAGGTGCATAAAATATTGCCAG 59.491 41.667 0.00 0.00 44.26 4.85
2368 2488 1.068921 GGTGTGCGTGGCCATTTTT 59.931 52.632 9.72 0.00 0.00 1.94
2369 2489 0.538516 TAGGTGTGCGTGGCCATTTT 60.539 50.000 9.72 0.00 0.00 1.82
2379 2501 3.181507 CCAATTGTGAAGATAGGTGTGCG 60.182 47.826 4.43 0.00 0.00 5.34
2404 2526 9.249457 CATTGAGTAACTATGTGTACGATTGAT 57.751 33.333 0.00 0.00 0.00 2.57
2408 2530 6.806751 AGCATTGAGTAACTATGTGTACGAT 58.193 36.000 0.00 0.00 34.99 3.73
2481 2603 7.832503 ATGCAAAGGAAAACATTAAGCATAC 57.167 32.000 0.00 0.00 38.29 2.39
2500 2622 3.584406 CTCCTGTCCTCCCATATATGCAA 59.416 47.826 7.24 0.00 0.00 4.08
2551 2673 3.246226 GCTCGTATCGCAACTGAATTCAT 59.754 43.478 8.96 0.00 0.00 2.57
2552 2674 2.603110 GCTCGTATCGCAACTGAATTCA 59.397 45.455 8.12 8.12 0.00 2.57
2553 2675 2.860735 AGCTCGTATCGCAACTGAATTC 59.139 45.455 0.00 0.00 0.00 2.17
2554 2676 2.893637 AGCTCGTATCGCAACTGAATT 58.106 42.857 0.00 0.00 0.00 2.17
2555 2677 2.586258 AGCTCGTATCGCAACTGAAT 57.414 45.000 0.00 0.00 0.00 2.57
2556 2678 3.710326 ATAGCTCGTATCGCAACTGAA 57.290 42.857 0.00 0.00 0.00 3.02
2557 2679 3.710326 AATAGCTCGTATCGCAACTGA 57.290 42.857 0.00 0.00 0.00 3.41
2558 2680 3.551890 ACAAATAGCTCGTATCGCAACTG 59.448 43.478 0.00 0.00 0.00 3.16
2559 2681 3.782046 ACAAATAGCTCGTATCGCAACT 58.218 40.909 0.00 0.00 0.00 3.16
2560 2682 4.201685 ACAACAAATAGCTCGTATCGCAAC 60.202 41.667 0.00 0.00 0.00 4.17
2576 3168 3.677424 GCAACAGCAACCCTTACAACAAA 60.677 43.478 0.00 0.00 0.00 2.83
2585 3663 1.019278 CGTATCGCAACAGCAACCCT 61.019 55.000 0.00 0.00 0.00 4.34
2594 3672 3.120792 TCCAAATAGCTCGTATCGCAAC 58.879 45.455 0.00 0.00 0.00 4.17
2610 3688 3.132646 AGCATTGTTTCTGCACTTCCAAA 59.867 39.130 0.00 0.00 42.15 3.28
2612 3690 2.309613 AGCATTGTTTCTGCACTTCCA 58.690 42.857 0.00 0.00 42.15 3.53
2613 3691 3.054878 CAAGCATTGTTTCTGCACTTCC 58.945 45.455 0.00 0.00 42.34 3.46
2615 3693 3.431207 AAGCAAGCATTGTTTCTGCACTT 60.431 39.130 0.00 0.00 46.89 3.16
2617 3695 2.476821 AAGCAAGCATTGTTTCTGCAC 58.523 42.857 0.00 0.00 46.89 4.57
2618 3696 2.894763 AAGCAAGCATTGTTTCTGCA 57.105 40.000 0.00 0.00 46.89 4.41
2619 3697 2.154389 CGAAAGCAAGCATTGTTTCTGC 59.846 45.455 0.00 0.00 46.89 4.26
2621 3699 3.715628 ACGAAAGCAAGCATTGTTTCT 57.284 38.095 0.00 0.00 46.89 2.52
2652 3785 8.634444 GTTGATCAAGTACACTAGTAGGATCAT 58.366 37.037 8.80 0.00 39.98 2.45
2679 3812 2.957402 TGCCAGACCAAGAATCTTGT 57.043 45.000 20.18 9.51 0.00 3.16
2680 3813 3.760151 TGAATGCCAGACCAAGAATCTTG 59.240 43.478 15.64 15.64 0.00 3.02
2681 3814 4.015084 CTGAATGCCAGACCAAGAATCTT 58.985 43.478 0.00 0.00 45.78 2.40
2682 3815 3.265221 TCTGAATGCCAGACCAAGAATCT 59.735 43.478 0.00 0.00 46.38 2.40
2683 3816 3.614092 TCTGAATGCCAGACCAAGAATC 58.386 45.455 0.00 0.00 46.38 2.52
2688 3821 2.639347 TCTTCTCTGAATGCCAGACCAA 59.361 45.455 0.00 0.00 46.38 3.67
2690 3823 2.419851 CCTCTTCTCTGAATGCCAGACC 60.420 54.545 0.00 0.00 46.38 3.85
2691 3824 2.499289 TCCTCTTCTCTGAATGCCAGAC 59.501 50.000 0.00 0.00 46.38 3.51
2693 3826 3.623906 TTCCTCTTCTCTGAATGCCAG 57.376 47.619 0.00 0.00 44.27 4.85
2695 3828 4.455190 GCATATTCCTCTTCTCTGAATGCC 59.545 45.833 0.00 0.00 31.55 4.40
2696 3829 4.152045 CGCATATTCCTCTTCTCTGAATGC 59.848 45.833 0.00 0.00 31.55 3.56
2697 3830 4.152045 GCGCATATTCCTCTTCTCTGAATG 59.848 45.833 0.30 0.00 31.55 2.67
2701 3844 2.799412 GTGCGCATATTCCTCTTCTCTG 59.201 50.000 15.91 0.00 0.00 3.35
2721 3864 7.415229 GCAGTTTTACTAGTTTAACTTGCAGT 58.585 34.615 21.94 3.61 31.32 4.40
2748 3891 2.046314 TCAGCCGCCACCTAAAGC 60.046 61.111 0.00 0.00 0.00 3.51
2775 3918 3.072184 CCCATATGAGGTTCCTCTTCCTG 59.928 52.174 18.07 12.61 33.83 3.86
2776 3919 3.051032 TCCCATATGAGGTTCCTCTTCCT 60.051 47.826 18.07 5.17 36.70 3.36
2777 3920 3.071747 GTCCCATATGAGGTTCCTCTTCC 59.928 52.174 18.07 0.00 34.42 3.46
2778 3921 3.243907 CGTCCCATATGAGGTTCCTCTTC 60.244 52.174 18.07 1.09 34.42 2.87
2779 3922 2.700897 CGTCCCATATGAGGTTCCTCTT 59.299 50.000 18.07 14.46 34.42 2.85
2780 3923 2.320781 CGTCCCATATGAGGTTCCTCT 58.679 52.381 18.07 7.87 34.42 3.69
2781 3924 1.270358 GCGTCCCATATGAGGTTCCTC 60.270 57.143 11.53 11.53 0.00 3.71
2782 3925 0.759346 GCGTCCCATATGAGGTTCCT 59.241 55.000 3.65 0.00 0.00 3.36
2783 3926 0.759346 AGCGTCCCATATGAGGTTCC 59.241 55.000 3.65 0.00 0.00 3.62
2784 3927 1.871080 CAGCGTCCCATATGAGGTTC 58.129 55.000 3.65 2.20 0.00 3.62
2785 3928 0.179045 GCAGCGTCCCATATGAGGTT 60.179 55.000 3.65 0.00 0.00 3.50
2786 3929 1.050988 AGCAGCGTCCCATATGAGGT 61.051 55.000 3.65 0.00 0.00 3.85
2787 3930 0.602106 CAGCAGCGTCCCATATGAGG 60.602 60.000 3.65 4.07 0.00 3.86
2821 3964 5.283717 CAGAGTTTGCCAATTTAATTCGTCG 59.716 40.000 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.