Multiple sequence alignment - TraesCS4B01G343900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G343900 chr4B 100.000 2675 0 0 1 2675 637595698 637598372 0.000000e+00 4940
1 TraesCS4B01G343900 chr7A 95.161 2335 96 10 358 2675 299568843 299571177 0.000000e+00 3670
2 TraesCS4B01G343900 chr1D 95.116 2334 97 6 358 2675 283557063 283559395 0.000000e+00 3663
3 TraesCS4B01G343900 chr1B 94.859 2334 103 10 359 2675 611146109 611148442 0.000000e+00 3629
4 TraesCS4B01G343900 chr1B 93.185 2333 114 18 359 2675 682092121 682089818 0.000000e+00 3386
5 TraesCS4B01G343900 chr2A 94.667 2344 107 11 350 2675 57916528 57914185 0.000000e+00 3620
6 TraesCS4B01G343900 chr2A 94.647 2335 108 10 358 2675 678124287 678121953 0.000000e+00 3603
7 TraesCS4B01G343900 chr2A 94.392 2318 123 5 359 2675 672845011 672847322 0.000000e+00 3554
8 TraesCS4B01G343900 chr3B 94.587 2346 108 12 348 2675 245008819 245011163 0.000000e+00 3611
9 TraesCS4B01G343900 chr3B 95.145 1833 89 0 843 2675 259399586 259397754 0.000000e+00 2892
10 TraesCS4B01G343900 chr3B 89.417 463 33 9 368 814 259400045 259399583 1.070000e-158 569
11 TraesCS4B01G343900 chr4D 94.728 2333 98 6 359 2675 281202809 281200486 0.000000e+00 3603
12 TraesCS4B01G343900 chr4D 95.787 356 15 0 1 356 497123528 497123883 2.310000e-160 575
13 TraesCS4B01G343900 chr6A 92.958 1065 61 3 358 1409 22479095 22480158 0.000000e+00 1539
14 TraesCS4B01G343900 chr5A 91.525 354 20 4 13 356 676882091 676882444 1.860000e-131 479


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G343900 chr4B 637595698 637598372 2674 False 4940.0 4940 100.000 1 2675 1 chr4B.!!$F1 2674
1 TraesCS4B01G343900 chr7A 299568843 299571177 2334 False 3670.0 3670 95.161 358 2675 1 chr7A.!!$F1 2317
2 TraesCS4B01G343900 chr1D 283557063 283559395 2332 False 3663.0 3663 95.116 358 2675 1 chr1D.!!$F1 2317
3 TraesCS4B01G343900 chr1B 611146109 611148442 2333 False 3629.0 3629 94.859 359 2675 1 chr1B.!!$F1 2316
4 TraesCS4B01G343900 chr1B 682089818 682092121 2303 True 3386.0 3386 93.185 359 2675 1 chr1B.!!$R1 2316
5 TraesCS4B01G343900 chr2A 57914185 57916528 2343 True 3620.0 3620 94.667 350 2675 1 chr2A.!!$R1 2325
6 TraesCS4B01G343900 chr2A 678121953 678124287 2334 True 3603.0 3603 94.647 358 2675 1 chr2A.!!$R2 2317
7 TraesCS4B01G343900 chr2A 672845011 672847322 2311 False 3554.0 3554 94.392 359 2675 1 chr2A.!!$F1 2316
8 TraesCS4B01G343900 chr3B 245008819 245011163 2344 False 3611.0 3611 94.587 348 2675 1 chr3B.!!$F1 2327
9 TraesCS4B01G343900 chr3B 259397754 259400045 2291 True 1730.5 2892 92.281 368 2675 2 chr3B.!!$R1 2307
10 TraesCS4B01G343900 chr4D 281200486 281202809 2323 True 3603.0 3603 94.728 359 2675 1 chr4D.!!$R1 2316
11 TraesCS4B01G343900 chr6A 22479095 22480158 1063 False 1539.0 1539 92.958 358 1409 1 chr6A.!!$F1 1051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 694 0.249911 GAGAGGAGGTTGTTGTGCGT 60.25 55.0 0.0 0.0 0.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1861 0.840617 TTCAGTGGGGTTGTGCACTA 59.159 50.0 19.41 7.83 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.806203 TTAATTTTATGCAAATGATCACTCCTG 57.194 29.630 0.00 0.00 35.09 3.86
43 44 5.840243 TTTATGCAAATGATCACTCCTGG 57.160 39.130 0.00 0.00 0.00 4.45
44 45 2.133281 TGCAAATGATCACTCCTGGG 57.867 50.000 0.00 0.00 0.00 4.45
45 46 1.355381 TGCAAATGATCACTCCTGGGT 59.645 47.619 0.00 0.00 0.00 4.51
46 47 2.225091 TGCAAATGATCACTCCTGGGTT 60.225 45.455 0.00 0.00 0.00 4.11
47 48 2.827921 GCAAATGATCACTCCTGGGTTT 59.172 45.455 0.00 0.00 0.00 3.27
48 49 3.259123 GCAAATGATCACTCCTGGGTTTT 59.741 43.478 0.00 0.00 0.00 2.43
49 50 4.813027 CAAATGATCACTCCTGGGTTTTG 58.187 43.478 0.00 0.00 0.00 2.44
50 51 1.909700 TGATCACTCCTGGGTTTTGC 58.090 50.000 0.00 0.00 0.00 3.68
51 52 1.425066 TGATCACTCCTGGGTTTTGCT 59.575 47.619 0.00 0.00 0.00 3.91
52 53 2.158475 TGATCACTCCTGGGTTTTGCTT 60.158 45.455 0.00 0.00 0.00 3.91
53 54 3.073798 TGATCACTCCTGGGTTTTGCTTA 59.926 43.478 0.00 0.00 0.00 3.09
54 55 3.586470 TCACTCCTGGGTTTTGCTTAA 57.414 42.857 0.00 0.00 0.00 1.85
55 56 3.904717 TCACTCCTGGGTTTTGCTTAAA 58.095 40.909 0.00 0.00 0.00 1.52
56 57 3.888930 TCACTCCTGGGTTTTGCTTAAAG 59.111 43.478 0.00 0.00 0.00 1.85
57 58 3.636764 CACTCCTGGGTTTTGCTTAAAGT 59.363 43.478 0.00 0.00 0.00 2.66
58 59 3.636764 ACTCCTGGGTTTTGCTTAAAGTG 59.363 43.478 0.00 0.00 0.00 3.16
59 60 3.636764 CTCCTGGGTTTTGCTTAAAGTGT 59.363 43.478 0.00 0.00 0.00 3.55
60 61 4.027437 TCCTGGGTTTTGCTTAAAGTGTT 58.973 39.130 0.00 0.00 0.00 3.32
61 62 4.468153 TCCTGGGTTTTGCTTAAAGTGTTT 59.532 37.500 0.00 0.00 0.00 2.83
62 63 5.046231 TCCTGGGTTTTGCTTAAAGTGTTTT 60.046 36.000 0.00 0.00 0.00 2.43
63 64 5.064579 CCTGGGTTTTGCTTAAAGTGTTTTG 59.935 40.000 0.00 0.00 0.00 2.44
64 65 5.552178 TGGGTTTTGCTTAAAGTGTTTTGT 58.448 33.333 0.00 0.00 0.00 2.83
65 66 5.409826 TGGGTTTTGCTTAAAGTGTTTTGTG 59.590 36.000 0.00 0.00 0.00 3.33
66 67 5.639931 GGGTTTTGCTTAAAGTGTTTTGTGA 59.360 36.000 0.00 0.00 0.00 3.58
67 68 6.315144 GGGTTTTGCTTAAAGTGTTTTGTGAT 59.685 34.615 0.00 0.00 0.00 3.06
68 69 7.148323 GGGTTTTGCTTAAAGTGTTTTGTGATT 60.148 33.333 0.00 0.00 0.00 2.57
69 70 7.691877 GGTTTTGCTTAAAGTGTTTTGTGATTG 59.308 33.333 0.00 0.00 0.00 2.67
70 71 7.897575 TTTGCTTAAAGTGTTTTGTGATTGT 57.102 28.000 0.00 0.00 0.00 2.71
71 72 6.884096 TGCTTAAAGTGTTTTGTGATTGTG 57.116 33.333 0.00 0.00 0.00 3.33
72 73 5.290643 TGCTTAAAGTGTTTTGTGATTGTGC 59.709 36.000 0.00 0.00 0.00 4.57
73 74 5.290643 GCTTAAAGTGTTTTGTGATTGTGCA 59.709 36.000 0.00 0.00 0.00 4.57
74 75 6.018832 GCTTAAAGTGTTTTGTGATTGTGCAT 60.019 34.615 0.00 0.00 0.00 3.96
75 76 7.465781 GCTTAAAGTGTTTTGTGATTGTGCATT 60.466 33.333 0.00 0.00 0.00 3.56
76 77 6.740411 AAAGTGTTTTGTGATTGTGCATTT 57.260 29.167 0.00 0.00 0.00 2.32
77 78 5.721876 AGTGTTTTGTGATTGTGCATTTG 57.278 34.783 0.00 0.00 0.00 2.32
78 79 5.177326 AGTGTTTTGTGATTGTGCATTTGT 58.823 33.333 0.00 0.00 0.00 2.83
79 80 6.336566 AGTGTTTTGTGATTGTGCATTTGTA 58.663 32.000 0.00 0.00 0.00 2.41
80 81 6.985645 AGTGTTTTGTGATTGTGCATTTGTAT 59.014 30.769 0.00 0.00 0.00 2.29
81 82 7.495279 AGTGTTTTGTGATTGTGCATTTGTATT 59.505 29.630 0.00 0.00 0.00 1.89
82 83 8.759641 GTGTTTTGTGATTGTGCATTTGTATTA 58.240 29.630 0.00 0.00 0.00 0.98
83 84 9.317936 TGTTTTGTGATTGTGCATTTGTATTAA 57.682 25.926 0.00 0.00 0.00 1.40
84 85 9.579610 GTTTTGTGATTGTGCATTTGTATTAAC 57.420 29.630 0.00 0.00 0.00 2.01
85 86 9.539825 TTTTGTGATTGTGCATTTGTATTAACT 57.460 25.926 0.00 0.00 0.00 2.24
86 87 8.741101 TTGTGATTGTGCATTTGTATTAACTC 57.259 30.769 0.00 0.00 0.00 3.01
87 88 7.880105 TGTGATTGTGCATTTGTATTAACTCA 58.120 30.769 0.00 0.00 0.00 3.41
88 89 8.355913 TGTGATTGTGCATTTGTATTAACTCAA 58.644 29.630 0.00 0.00 0.00 3.02
89 90 8.853345 GTGATTGTGCATTTGTATTAACTCAAG 58.147 33.333 0.00 0.00 0.00 3.02
90 91 7.541783 TGATTGTGCATTTGTATTAACTCAAGC 59.458 33.333 0.00 0.00 0.00 4.01
91 92 5.708948 TGTGCATTTGTATTAACTCAAGCC 58.291 37.500 0.00 0.00 0.00 4.35
92 93 5.242615 TGTGCATTTGTATTAACTCAAGCCA 59.757 36.000 0.00 0.00 0.00 4.75
93 94 6.155827 GTGCATTTGTATTAACTCAAGCCAA 58.844 36.000 0.00 0.00 0.00 4.52
94 95 6.308766 GTGCATTTGTATTAACTCAAGCCAAG 59.691 38.462 0.00 0.00 0.00 3.61
95 96 6.015519 TGCATTTGTATTAACTCAAGCCAAGT 60.016 34.615 0.00 0.00 0.00 3.16
96 97 6.868339 GCATTTGTATTAACTCAAGCCAAGTT 59.132 34.615 2.11 2.11 40.06 2.66
97 98 7.062255 GCATTTGTATTAACTCAAGCCAAGTTC 59.938 37.037 0.00 0.00 38.00 3.01
98 99 7.575414 TTTGTATTAACTCAAGCCAAGTTCA 57.425 32.000 0.00 0.00 38.00 3.18
99 100 7.759489 TTGTATTAACTCAAGCCAAGTTCAT 57.241 32.000 0.00 0.00 38.00 2.57
100 101 7.144722 TGTATTAACTCAAGCCAAGTTCATG 57.855 36.000 0.00 0.00 38.00 3.07
101 102 4.503741 TTAACTCAAGCCAAGTTCATGC 57.496 40.909 0.00 0.00 38.00 4.06
102 103 2.283145 ACTCAAGCCAAGTTCATGCT 57.717 45.000 0.00 0.00 36.79 3.79
103 104 2.590821 ACTCAAGCCAAGTTCATGCTT 58.409 42.857 0.00 0.00 45.69 3.91
104 105 2.961062 ACTCAAGCCAAGTTCATGCTTT 59.039 40.909 0.00 0.00 42.37 3.51
105 106 3.385755 ACTCAAGCCAAGTTCATGCTTTT 59.614 39.130 0.00 0.00 42.37 2.27
106 107 4.584325 ACTCAAGCCAAGTTCATGCTTTTA 59.416 37.500 0.00 0.00 42.37 1.52
107 108 5.244626 ACTCAAGCCAAGTTCATGCTTTTAT 59.755 36.000 0.00 0.00 42.37 1.40
108 109 6.100404 TCAAGCCAAGTTCATGCTTTTATT 57.900 33.333 0.00 0.00 42.37 1.40
109 110 6.158598 TCAAGCCAAGTTCATGCTTTTATTC 58.841 36.000 0.00 0.00 42.37 1.75
110 111 5.990120 AGCCAAGTTCATGCTTTTATTCT 57.010 34.783 0.00 0.00 29.17 2.40
111 112 7.176515 TCAAGCCAAGTTCATGCTTTTATTCTA 59.823 33.333 0.00 0.00 42.37 2.10
112 113 6.856895 AGCCAAGTTCATGCTTTTATTCTAC 58.143 36.000 0.00 0.00 29.17 2.59
113 114 6.660949 AGCCAAGTTCATGCTTTTATTCTACT 59.339 34.615 0.00 0.00 29.17 2.57
114 115 6.969473 GCCAAGTTCATGCTTTTATTCTACTC 59.031 38.462 0.00 0.00 0.00 2.59
115 116 7.148171 GCCAAGTTCATGCTTTTATTCTACTCT 60.148 37.037 0.00 0.00 0.00 3.24
116 117 8.734386 CCAAGTTCATGCTTTTATTCTACTCTT 58.266 33.333 0.00 0.00 0.00 2.85
117 118 9.552114 CAAGTTCATGCTTTTATTCTACTCTTG 57.448 33.333 0.00 0.00 0.00 3.02
118 119 8.854614 AGTTCATGCTTTTATTCTACTCTTGT 57.145 30.769 0.00 0.00 0.00 3.16
119 120 8.725148 AGTTCATGCTTTTATTCTACTCTTGTG 58.275 33.333 0.00 0.00 0.00 3.33
120 121 8.507249 GTTCATGCTTTTATTCTACTCTTGTGT 58.493 33.333 0.00 0.00 0.00 3.72
121 122 8.256611 TCATGCTTTTATTCTACTCTTGTGTC 57.743 34.615 0.00 0.00 0.00 3.67
122 123 7.877612 TCATGCTTTTATTCTACTCTTGTGTCA 59.122 33.333 0.00 0.00 0.00 3.58
123 124 7.421530 TGCTTTTATTCTACTCTTGTGTCAC 57.578 36.000 0.00 0.00 0.00 3.67
124 125 7.217200 TGCTTTTATTCTACTCTTGTGTCACT 58.783 34.615 4.27 0.00 0.00 3.41
125 126 7.385205 TGCTTTTATTCTACTCTTGTGTCACTC 59.615 37.037 4.27 0.00 0.00 3.51
126 127 7.148557 GCTTTTATTCTACTCTTGTGTCACTCC 60.149 40.741 4.27 0.00 0.00 3.85
127 128 7.540474 TTTATTCTACTCTTGTGTCACTCCT 57.460 36.000 4.27 0.00 0.00 3.69
128 129 8.645814 TTTATTCTACTCTTGTGTCACTCCTA 57.354 34.615 4.27 0.00 0.00 2.94
129 130 8.824756 TTATTCTACTCTTGTGTCACTCCTAT 57.175 34.615 4.27 0.00 0.00 2.57
130 131 9.916360 TTATTCTACTCTTGTGTCACTCCTATA 57.084 33.333 4.27 0.00 0.00 1.31
131 132 8.824756 ATTCTACTCTTGTGTCACTCCTATAA 57.175 34.615 4.27 0.00 0.00 0.98
132 133 8.824756 TTCTACTCTTGTGTCACTCCTATAAT 57.175 34.615 4.27 0.00 0.00 1.28
133 134 8.453238 TCTACTCTTGTGTCACTCCTATAATC 57.547 38.462 4.27 0.00 0.00 1.75
134 135 6.472686 ACTCTTGTGTCACTCCTATAATCC 57.527 41.667 4.27 0.00 0.00 3.01
135 136 5.958380 ACTCTTGTGTCACTCCTATAATCCA 59.042 40.000 4.27 0.00 0.00 3.41
136 137 6.440647 ACTCTTGTGTCACTCCTATAATCCAA 59.559 38.462 4.27 0.00 0.00 3.53
137 138 7.038302 ACTCTTGTGTCACTCCTATAATCCAAA 60.038 37.037 4.27 0.00 0.00 3.28
138 139 7.331026 TCTTGTGTCACTCCTATAATCCAAAG 58.669 38.462 4.27 0.00 0.00 2.77
139 140 6.867519 TGTGTCACTCCTATAATCCAAAGA 57.132 37.500 4.27 0.00 0.00 2.52
140 141 6.878317 TGTGTCACTCCTATAATCCAAAGAG 58.122 40.000 4.27 0.00 0.00 2.85
141 142 6.667848 TGTGTCACTCCTATAATCCAAAGAGA 59.332 38.462 4.27 0.00 0.00 3.10
142 143 6.981559 GTGTCACTCCTATAATCCAAAGAGAC 59.018 42.308 0.00 0.00 0.00 3.36
143 144 6.098409 TGTCACTCCTATAATCCAAAGAGACC 59.902 42.308 0.00 0.00 0.00 3.85
144 145 6.098409 GTCACTCCTATAATCCAAAGAGACCA 59.902 42.308 0.00 0.00 0.00 4.02
145 146 6.098409 TCACTCCTATAATCCAAAGAGACCAC 59.902 42.308 0.00 0.00 0.00 4.16
146 147 5.069251 ACTCCTATAATCCAAAGAGACCACG 59.931 44.000 0.00 0.00 0.00 4.94
147 148 4.960469 TCCTATAATCCAAAGAGACCACGT 59.040 41.667 0.00 0.00 0.00 4.49
148 149 6.131264 TCCTATAATCCAAAGAGACCACGTA 58.869 40.000 0.00 0.00 0.00 3.57
149 150 6.264744 TCCTATAATCCAAAGAGACCACGTAG 59.735 42.308 0.00 0.00 0.00 3.51
150 151 2.674796 ATCCAAAGAGACCACGTAGC 57.325 50.000 0.00 0.00 0.00 3.58
151 152 1.629043 TCCAAAGAGACCACGTAGCT 58.371 50.000 0.00 0.00 0.00 3.32
152 153 1.968493 TCCAAAGAGACCACGTAGCTT 59.032 47.619 0.00 0.00 0.00 3.74
153 154 2.029290 TCCAAAGAGACCACGTAGCTTC 60.029 50.000 0.00 0.00 0.00 3.86
154 155 2.028930 CCAAAGAGACCACGTAGCTTCT 60.029 50.000 0.00 0.00 0.00 2.85
155 156 3.246619 CAAAGAGACCACGTAGCTTCTC 58.753 50.000 0.00 0.00 35.66 2.87
156 157 2.201921 AGAGACCACGTAGCTTCTCA 57.798 50.000 12.23 0.00 37.54 3.27
157 158 2.729194 AGAGACCACGTAGCTTCTCAT 58.271 47.619 12.23 0.00 37.54 2.90
158 159 3.887352 AGAGACCACGTAGCTTCTCATA 58.113 45.455 12.23 0.00 37.54 2.15
159 160 3.880490 AGAGACCACGTAGCTTCTCATAG 59.120 47.826 12.23 0.00 37.54 2.23
160 161 2.952978 AGACCACGTAGCTTCTCATAGG 59.047 50.000 0.00 0.00 0.00 2.57
161 162 1.409427 ACCACGTAGCTTCTCATAGGC 59.591 52.381 0.00 0.00 0.00 3.93
162 163 1.409064 CCACGTAGCTTCTCATAGGCA 59.591 52.381 0.00 0.00 0.00 4.75
163 164 2.159099 CCACGTAGCTTCTCATAGGCAA 60.159 50.000 0.00 0.00 0.00 4.52
164 165 3.521560 CACGTAGCTTCTCATAGGCAAA 58.478 45.455 0.00 0.00 0.00 3.68
165 166 4.122776 CACGTAGCTTCTCATAGGCAAAT 58.877 43.478 0.00 0.00 0.00 2.32
166 167 5.289595 CACGTAGCTTCTCATAGGCAAATA 58.710 41.667 0.00 0.00 0.00 1.40
167 168 5.753438 CACGTAGCTTCTCATAGGCAAATAA 59.247 40.000 0.00 0.00 0.00 1.40
168 169 5.753921 ACGTAGCTTCTCATAGGCAAATAAC 59.246 40.000 0.00 0.00 0.00 1.89
169 170 5.986135 CGTAGCTTCTCATAGGCAAATAACT 59.014 40.000 0.00 0.00 0.00 2.24
170 171 6.480320 CGTAGCTTCTCATAGGCAAATAACTT 59.520 38.462 0.00 0.00 0.00 2.66
171 172 7.011482 CGTAGCTTCTCATAGGCAAATAACTTT 59.989 37.037 0.00 0.00 0.00 2.66
172 173 9.326413 GTAGCTTCTCATAGGCAAATAACTTTA 57.674 33.333 0.00 0.00 0.00 1.85
173 174 8.443953 AGCTTCTCATAGGCAAATAACTTTAG 57.556 34.615 0.00 0.00 0.00 1.85
174 175 7.500559 AGCTTCTCATAGGCAAATAACTTTAGG 59.499 37.037 0.00 0.00 0.00 2.69
175 176 7.499232 GCTTCTCATAGGCAAATAACTTTAGGA 59.501 37.037 0.00 0.00 0.00 2.94
176 177 9.566432 CTTCTCATAGGCAAATAACTTTAGGAT 57.434 33.333 0.00 0.00 0.00 3.24
177 178 9.561069 TTCTCATAGGCAAATAACTTTAGGATC 57.439 33.333 0.00 0.00 0.00 3.36
178 179 8.713971 TCTCATAGGCAAATAACTTTAGGATCA 58.286 33.333 0.00 0.00 0.00 2.92
179 180 8.908786 TCATAGGCAAATAACTTTAGGATCAG 57.091 34.615 0.00 0.00 0.00 2.90
180 181 7.445402 TCATAGGCAAATAACTTTAGGATCAGC 59.555 37.037 0.00 0.00 0.00 4.26
181 182 5.509498 AGGCAAATAACTTTAGGATCAGCA 58.491 37.500 0.00 0.00 0.00 4.41
182 183 6.131961 AGGCAAATAACTTTAGGATCAGCAT 58.868 36.000 0.00 0.00 0.00 3.79
183 184 7.290061 AGGCAAATAACTTTAGGATCAGCATA 58.710 34.615 0.00 0.00 0.00 3.14
184 185 7.946776 AGGCAAATAACTTTAGGATCAGCATAT 59.053 33.333 0.00 0.00 0.00 1.78
185 186 9.231297 GGCAAATAACTTTAGGATCAGCATATA 57.769 33.333 0.00 0.00 0.00 0.86
191 192 8.854614 AACTTTAGGATCAGCATATATGGTTC 57.145 34.615 14.68 10.74 36.17 3.62
192 193 8.212259 ACTTTAGGATCAGCATATATGGTTCT 57.788 34.615 14.68 11.76 36.17 3.01
193 194 8.317679 ACTTTAGGATCAGCATATATGGTTCTC 58.682 37.037 14.68 13.16 36.17 2.87
194 195 7.797121 TTAGGATCAGCATATATGGTTCTCA 57.203 36.000 14.68 0.54 36.17 3.27
195 196 6.887886 AGGATCAGCATATATGGTTCTCAT 57.112 37.500 14.68 9.23 36.17 2.90
196 197 7.268212 AGGATCAGCATATATGGTTCTCATT 57.732 36.000 14.68 4.84 36.17 2.57
197 198 8.384693 AGGATCAGCATATATGGTTCTCATTA 57.615 34.615 14.68 0.00 36.17 1.90
198 199 8.829746 AGGATCAGCATATATGGTTCTCATTAA 58.170 33.333 14.68 0.00 36.17 1.40
199 200 9.453572 GGATCAGCATATATGGTTCTCATTAAA 57.546 33.333 14.68 0.00 36.17 1.52
225 226 9.760077 ATTATGGTTAAACTTCTCCTATACGTG 57.240 33.333 0.00 0.00 0.00 4.49
226 227 6.839124 TGGTTAAACTTCTCCTATACGTGA 57.161 37.500 0.00 0.00 0.00 4.35
227 228 7.414222 TGGTTAAACTTCTCCTATACGTGAT 57.586 36.000 0.00 0.00 0.00 3.06
228 229 7.486647 TGGTTAAACTTCTCCTATACGTGATC 58.513 38.462 0.00 0.00 0.00 2.92
229 230 7.123098 TGGTTAAACTTCTCCTATACGTGATCA 59.877 37.037 0.00 0.00 0.00 2.92
230 231 8.142551 GGTTAAACTTCTCCTATACGTGATCAT 58.857 37.037 0.00 0.00 0.00 2.45
231 232 9.530633 GTTAAACTTCTCCTATACGTGATCATT 57.469 33.333 0.00 0.00 0.00 2.57
233 234 8.425577 AAACTTCTCCTATACGTGATCATTTG 57.574 34.615 0.00 0.00 0.00 2.32
234 235 6.516718 ACTTCTCCTATACGTGATCATTTGG 58.483 40.000 0.00 0.00 0.00 3.28
235 236 6.323996 ACTTCTCCTATACGTGATCATTTGGA 59.676 38.462 0.00 1.07 0.00 3.53
236 237 6.724893 TCTCCTATACGTGATCATTTGGAA 57.275 37.500 0.00 0.00 0.00 3.53
237 238 6.513180 TCTCCTATACGTGATCATTTGGAAC 58.487 40.000 0.00 0.00 0.00 3.62
238 239 6.097696 TCTCCTATACGTGATCATTTGGAACA 59.902 38.462 0.00 0.00 0.00 3.18
239 240 6.826668 TCCTATACGTGATCATTTGGAACAT 58.173 36.000 0.00 0.00 39.30 2.71
240 241 6.705825 TCCTATACGTGATCATTTGGAACATG 59.294 38.462 0.00 0.00 40.19 3.21
241 242 6.705825 CCTATACGTGATCATTTGGAACATGA 59.294 38.462 0.00 0.00 37.46 3.07
242 243 7.388776 CCTATACGTGATCATTTGGAACATGAT 59.611 37.037 0.00 0.00 42.90 2.45
243 244 5.902613 ACGTGATCATTTGGAACATGATT 57.097 34.783 0.00 0.00 40.75 2.57
244 245 8.675705 ATACGTGATCATTTGGAACATGATTA 57.324 30.769 0.00 0.00 40.75 1.75
245 246 7.019774 ACGTGATCATTTGGAACATGATTAG 57.980 36.000 0.00 0.00 40.75 1.73
246 247 6.599244 ACGTGATCATTTGGAACATGATTAGT 59.401 34.615 0.00 0.00 40.75 2.24
247 248 7.768582 ACGTGATCATTTGGAACATGATTAGTA 59.231 33.333 0.00 0.00 40.75 1.82
248 249 8.777413 CGTGATCATTTGGAACATGATTAGTAT 58.223 33.333 0.00 0.00 40.75 2.12
262 263 9.840427 ACATGATTAGTATTGTTTTTCTTTCCG 57.160 29.630 0.00 0.00 0.00 4.30
263 264 9.840427 CATGATTAGTATTGTTTTTCTTTCCGT 57.160 29.630 0.00 0.00 0.00 4.69
264 265 9.840427 ATGATTAGTATTGTTTTTCTTTCCGTG 57.160 29.630 0.00 0.00 0.00 4.94
265 266 8.293867 TGATTAGTATTGTTTTTCTTTCCGTGG 58.706 33.333 0.00 0.00 0.00 4.94
266 267 5.447624 AGTATTGTTTTTCTTTCCGTGGG 57.552 39.130 0.00 0.00 0.00 4.61
267 268 3.744238 ATTGTTTTTCTTTCCGTGGGG 57.256 42.857 0.00 0.00 0.00 4.96
268 269 2.146920 TGTTTTTCTTTCCGTGGGGT 57.853 45.000 0.00 0.00 33.83 4.95
269 270 2.025898 TGTTTTTCTTTCCGTGGGGTC 58.974 47.619 0.00 0.00 33.83 4.46
270 271 2.025898 GTTTTTCTTTCCGTGGGGTCA 58.974 47.619 0.00 0.00 33.83 4.02
271 272 2.626266 GTTTTTCTTTCCGTGGGGTCAT 59.374 45.455 0.00 0.00 33.83 3.06
272 273 1.904287 TTTCTTTCCGTGGGGTCATG 58.096 50.000 0.00 0.00 33.83 3.07
273 274 0.608035 TTCTTTCCGTGGGGTCATGC 60.608 55.000 0.00 0.00 33.83 4.06
274 275 1.303236 CTTTCCGTGGGGTCATGCA 60.303 57.895 0.00 0.00 33.83 3.96
275 276 0.680921 CTTTCCGTGGGGTCATGCAT 60.681 55.000 0.00 0.00 33.83 3.96
276 277 0.964860 TTTCCGTGGGGTCATGCATG 60.965 55.000 21.07 21.07 33.83 4.06
277 278 3.520862 CCGTGGGGTCATGCATGC 61.521 66.667 22.25 11.82 0.00 4.06
278 279 2.751036 CGTGGGGTCATGCATGCA 60.751 61.111 25.04 25.04 0.00 3.96
279 280 2.887360 GTGGGGTCATGCATGCAC 59.113 61.111 25.37 18.70 0.00 4.57
280 281 1.679977 GTGGGGTCATGCATGCACT 60.680 57.895 25.37 9.74 0.00 4.40
281 282 1.679641 TGGGGTCATGCATGCACTG 60.680 57.895 25.37 20.99 0.00 3.66
282 283 1.679977 GGGGTCATGCATGCACTGT 60.680 57.895 25.37 4.03 0.00 3.55
283 284 1.660560 GGGGTCATGCATGCACTGTC 61.661 60.000 25.37 18.09 0.00 3.51
284 285 0.679002 GGGTCATGCATGCACTGTCT 60.679 55.000 25.37 3.10 0.00 3.41
285 286 1.171308 GGTCATGCATGCACTGTCTT 58.829 50.000 25.37 2.19 0.00 3.01
286 287 1.131883 GGTCATGCATGCACTGTCTTC 59.868 52.381 25.37 9.16 0.00 2.87
287 288 1.808343 GTCATGCATGCACTGTCTTCA 59.192 47.619 25.37 3.71 0.00 3.02
288 289 2.227149 GTCATGCATGCACTGTCTTCAA 59.773 45.455 25.37 3.03 0.00 2.69
289 290 2.227149 TCATGCATGCACTGTCTTCAAC 59.773 45.455 25.37 0.00 0.00 3.18
290 291 1.677942 TGCATGCACTGTCTTCAACA 58.322 45.000 18.46 0.00 36.18 3.33
291 292 2.022934 TGCATGCACTGTCTTCAACAA 58.977 42.857 18.46 0.00 37.45 2.83
292 293 2.033675 TGCATGCACTGTCTTCAACAAG 59.966 45.455 18.46 0.00 37.45 3.16
293 294 2.606308 GCATGCACTGTCTTCAACAAGG 60.606 50.000 14.21 0.00 37.45 3.61
294 295 2.418368 TGCACTGTCTTCAACAAGGT 57.582 45.000 0.00 0.00 37.45 3.50
295 296 2.288666 TGCACTGTCTTCAACAAGGTC 58.711 47.619 0.00 0.00 37.45 3.85
296 297 2.092968 TGCACTGTCTTCAACAAGGTCT 60.093 45.455 0.00 0.00 37.45 3.85
297 298 2.545946 GCACTGTCTTCAACAAGGTCTC 59.454 50.000 0.00 0.00 37.45 3.36
298 299 3.134458 CACTGTCTTCAACAAGGTCTCC 58.866 50.000 0.00 0.00 37.45 3.71
299 300 3.041946 ACTGTCTTCAACAAGGTCTCCT 58.958 45.455 0.00 0.00 37.45 3.69
300 301 3.456277 ACTGTCTTCAACAAGGTCTCCTT 59.544 43.478 0.00 0.00 45.88 3.36
310 311 3.692257 AAGGTCTCCTTGAGTCATGTG 57.308 47.619 0.00 0.00 42.96 3.21
311 312 1.905215 AGGTCTCCTTGAGTCATGTGG 59.095 52.381 0.00 0.00 0.00 4.17
312 313 1.625818 GGTCTCCTTGAGTCATGTGGT 59.374 52.381 0.00 0.00 0.00 4.16
313 314 2.354203 GGTCTCCTTGAGTCATGTGGTC 60.354 54.545 0.00 0.00 0.00 4.02
314 315 1.902508 TCTCCTTGAGTCATGTGGTCC 59.097 52.381 0.00 0.00 0.00 4.46
315 316 1.905215 CTCCTTGAGTCATGTGGTCCT 59.095 52.381 0.00 0.00 0.00 3.85
316 317 3.099905 CTCCTTGAGTCATGTGGTCCTA 58.900 50.000 0.00 0.00 0.00 2.94
317 318 3.099905 TCCTTGAGTCATGTGGTCCTAG 58.900 50.000 0.00 0.00 0.00 3.02
318 319 3.099905 CCTTGAGTCATGTGGTCCTAGA 58.900 50.000 0.00 0.00 0.00 2.43
319 320 3.515502 CCTTGAGTCATGTGGTCCTAGAA 59.484 47.826 0.00 0.00 0.00 2.10
320 321 4.020218 CCTTGAGTCATGTGGTCCTAGAAA 60.020 45.833 0.00 0.00 0.00 2.52
321 322 5.338708 CCTTGAGTCATGTGGTCCTAGAAAT 60.339 44.000 0.00 0.00 0.00 2.17
322 323 5.089970 TGAGTCATGTGGTCCTAGAAATG 57.910 43.478 0.00 0.00 0.00 2.32
323 324 3.873952 GAGTCATGTGGTCCTAGAAATGC 59.126 47.826 0.00 0.00 0.00 3.56
324 325 3.264193 AGTCATGTGGTCCTAGAAATGCA 59.736 43.478 0.00 0.00 0.00 3.96
325 326 4.080129 AGTCATGTGGTCCTAGAAATGCAT 60.080 41.667 0.00 0.00 0.00 3.96
326 327 4.036027 GTCATGTGGTCCTAGAAATGCATG 59.964 45.833 0.00 1.06 35.25 4.06
327 328 3.998913 TGTGGTCCTAGAAATGCATGA 57.001 42.857 0.00 0.00 0.00 3.07
328 329 4.508551 TGTGGTCCTAGAAATGCATGAT 57.491 40.909 0.00 0.00 0.00 2.45
329 330 5.628797 TGTGGTCCTAGAAATGCATGATA 57.371 39.130 0.00 0.00 0.00 2.15
330 331 5.614308 TGTGGTCCTAGAAATGCATGATAG 58.386 41.667 0.00 3.05 0.00 2.08
331 332 4.999950 GTGGTCCTAGAAATGCATGATAGG 59.000 45.833 19.24 19.24 35.36 2.57
332 333 4.042062 TGGTCCTAGAAATGCATGATAGGG 59.958 45.833 22.52 13.88 34.89 3.53
333 334 4.287067 GGTCCTAGAAATGCATGATAGGGA 59.713 45.833 22.52 15.46 34.89 4.20
334 335 5.221925 GGTCCTAGAAATGCATGATAGGGAA 60.222 44.000 22.52 9.43 34.89 3.97
335 336 6.299141 GTCCTAGAAATGCATGATAGGGAAA 58.701 40.000 22.52 8.92 34.89 3.13
336 337 6.772716 GTCCTAGAAATGCATGATAGGGAAAA 59.227 38.462 22.52 8.67 34.89 2.29
337 338 7.000472 TCCTAGAAATGCATGATAGGGAAAAG 59.000 38.462 22.52 5.79 34.89 2.27
338 339 6.774656 CCTAGAAATGCATGATAGGGAAAAGT 59.225 38.462 18.19 0.00 31.24 2.66
339 340 6.461110 AGAAATGCATGATAGGGAAAAGTG 57.539 37.500 0.00 0.00 0.00 3.16
340 341 5.361857 AGAAATGCATGATAGGGAAAAGTGG 59.638 40.000 0.00 0.00 0.00 4.00
341 342 4.524802 ATGCATGATAGGGAAAAGTGGA 57.475 40.909 0.00 0.00 0.00 4.02
342 343 4.314522 TGCATGATAGGGAAAAGTGGAA 57.685 40.909 0.00 0.00 0.00 3.53
343 344 4.671831 TGCATGATAGGGAAAAGTGGAAA 58.328 39.130 0.00 0.00 0.00 3.13
344 345 5.083122 TGCATGATAGGGAAAAGTGGAAAA 58.917 37.500 0.00 0.00 0.00 2.29
345 346 5.047377 TGCATGATAGGGAAAAGTGGAAAAC 60.047 40.000 0.00 0.00 0.00 2.43
346 347 5.047377 GCATGATAGGGAAAAGTGGAAAACA 60.047 40.000 0.00 0.00 0.00 2.83
394 395 1.051812 CCCTAGCCCATCTGTACCTG 58.948 60.000 0.00 0.00 0.00 4.00
465 466 2.778270 TCCTCCTCTATTCCGTGAGAGA 59.222 50.000 0.46 0.00 41.55 3.10
479 480 0.320771 GAGAGACGCCACACACCAAT 60.321 55.000 0.00 0.00 0.00 3.16
692 694 0.249911 GAGAGGAGGTTGTTGTGCGT 60.250 55.000 0.00 0.00 0.00 5.24
777 795 0.555769 AAAAGGAAGGGCAGGTCACA 59.444 50.000 0.00 0.00 0.00 3.58
794 812 1.000274 CACACATCTCACCTCACACGA 60.000 52.381 0.00 0.00 0.00 4.35
797 815 1.686587 ACATCTCACCTCACACGACAA 59.313 47.619 0.00 0.00 0.00 3.18
817 835 0.535102 CAACACTGTCAGGTCCACCC 60.535 60.000 4.53 0.00 36.42 4.61
819 837 2.146724 CACTGTCAGGTCCACCCCA 61.147 63.158 4.53 0.00 36.42 4.96
851 869 1.064825 TTGTCTCCAAGTCCCCTTCC 58.935 55.000 0.00 0.00 0.00 3.46
876 894 0.950836 CGGTTGTTGATTGCTGTGGA 59.049 50.000 0.00 0.00 0.00 4.02
1018 1036 1.841302 AATGGCGGAGGAAGCACTGA 61.841 55.000 0.00 0.00 36.08 3.41
1022 1040 2.932234 CGGAGGAAGCACTGACGGT 61.932 63.158 0.00 0.00 0.00 4.83
1024 1042 0.606604 GGAGGAAGCACTGACGGTTA 59.393 55.000 0.00 0.00 0.00 2.85
1073 1091 2.268920 GAAGATGGTGGCTGCCGA 59.731 61.111 14.98 0.22 0.00 5.54
1218 1236 4.425520 GAGGTAAACTCATCCTCAGAACG 58.574 47.826 5.69 0.00 45.85 3.95
1280 1298 2.039613 CAGAAGACAAGAGGGGAGCTTT 59.960 50.000 0.00 0.00 0.00 3.51
1317 1335 1.065551 GCCACAGACAGTTTGGTGTTC 59.934 52.381 0.00 0.00 32.50 3.18
1327 1345 2.765699 AGTTTGGTGTTCAATTGGCTGT 59.234 40.909 5.42 0.00 34.98 4.40
1362 1380 0.514691 CTTCTGTTGCTGCTTCGGTC 59.485 55.000 0.00 0.00 0.00 4.79
1382 1400 1.784387 AGGACCTCCCTACTGCTGT 59.216 57.895 0.66 0.66 45.48 4.40
1427 1445 4.031611 AGTATGTACTCAGGGAAGGGAAC 58.968 47.826 0.00 0.00 0.00 3.62
1614 1632 1.207329 GTTGAGGATAGGCGTGTCCTT 59.793 52.381 23.38 9.48 44.11 3.36
1666 1684 8.424918 TGTTTGAGAATAGAAGGGCTATCTTAG 58.575 37.037 0.00 0.00 38.88 2.18
1672 1690 6.694445 ATAGAAGGGCTATCTTAGTGCAAT 57.306 37.500 0.00 0.00 34.72 3.56
1678 1696 5.544176 AGGGCTATCTTAGTGCAATAAGCTA 59.456 40.000 25.25 19.64 45.94 3.32
1684 1702 9.319143 CTATCTTAGTGCAATAAGCTAAGTTGT 57.681 33.333 25.25 12.49 45.94 3.32
1685 1703 7.979444 TCTTAGTGCAATAAGCTAAGTTGTT 57.021 32.000 25.25 0.00 45.94 2.83
1700 1718 6.647067 GCTAAGTTGTTGTCACTAAGAGATGT 59.353 38.462 0.00 0.00 0.00 3.06
1843 1861 3.620966 GCTGAAAGGGCATCTCAGTTACT 60.621 47.826 4.25 0.00 39.05 2.24
1859 1877 1.724545 TACTAGTGCACAACCCCACT 58.275 50.000 21.04 0.00 44.02 4.00
1886 1904 2.037772 GAGACAACAAAGGCAGAGGAGA 59.962 50.000 0.00 0.00 0.00 3.71
1997 2015 0.620700 AATCGCTACCAAGGGGAGGT 60.621 55.000 0.00 0.00 43.14 3.85
2068 2086 7.845037 TCATAGTCAAGACATGAGAAATGAGT 58.155 34.615 0.00 2.40 39.19 3.41
2100 2118 3.458189 AGACAAGAGGAACGAACAACAG 58.542 45.455 0.00 0.00 0.00 3.16
2111 2129 0.871057 GAACAACAGGCAGAGACAGC 59.129 55.000 0.00 0.00 0.00 4.40
2165 2184 6.660521 TCTGATGAAGGTAATGAAACTGCATT 59.339 34.615 0.00 0.00 41.15 3.56
2171 2190 6.160576 AGGTAATGAAACTGCATTTGTTGT 57.839 33.333 0.00 0.00 39.15 3.32
2175 2194 5.971895 ATGAAACTGCATTTGTTGTTGTC 57.028 34.783 0.00 0.00 0.00 3.18
2200 2220 1.682087 GGGCTGGTGTAGATTGGGTTC 60.682 57.143 0.00 0.00 0.00 3.62
2204 2224 3.432326 GCTGGTGTAGATTGGGTTCTAGG 60.432 52.174 0.00 0.00 0.00 3.02
2208 2228 2.693591 TGTAGATTGGGTTCTAGGCTCG 59.306 50.000 0.00 0.00 0.00 5.03
2229 2249 2.365582 GGGGCATCGAAACATGTAACT 58.634 47.619 0.00 0.00 0.00 2.24
2230 2250 3.537580 GGGGCATCGAAACATGTAACTA 58.462 45.455 0.00 0.00 0.00 2.24
2266 2286 7.390027 AGAGTTTGAATGCTATCAACAGTACT 58.610 34.615 4.53 5.79 38.95 2.73
2271 2291 5.130975 TGAATGCTATCAACAGTACTCCCAT 59.869 40.000 0.00 0.00 0.00 4.00
2392 2412 0.968405 GCATGTTCCAGCTTTCCCAA 59.032 50.000 0.00 0.00 0.00 4.12
2459 2479 6.039717 TGTGACGTAACTCTTAACAAGTACCT 59.960 38.462 4.30 0.00 0.00 3.08
2460 2480 6.920210 GTGACGTAACTCTTAACAAGTACCTT 59.080 38.462 0.00 0.00 0.00 3.50
2485 2505 5.250543 TGTTTGATTCAGGAGATGGGAACTA 59.749 40.000 0.00 0.00 0.00 2.24
2501 2521 1.314867 CTAGGAGGAGGCTTGGGGA 59.685 63.158 0.00 0.00 0.00 4.81
2577 2597 3.066190 GGCATGGCTCTTGCTGCA 61.066 61.111 12.86 0.00 40.68 4.41
2579 2599 1.515954 GCATGGCTCTTGCTGCAAT 59.484 52.632 16.38 0.00 39.32 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.806203 CAGGAGTGATCATTTGCATAAAATTAA 57.194 29.630 0.00 0.00 36.28 1.40
17 18 8.415553 CCAGGAGTGATCATTTGCATAAAATTA 58.584 33.333 0.00 0.00 36.28 1.40
18 19 7.270047 CCAGGAGTGATCATTTGCATAAAATT 58.730 34.615 0.00 0.00 36.28 1.82
19 20 6.183360 CCCAGGAGTGATCATTTGCATAAAAT 60.183 38.462 0.00 0.00 39.13 1.82
20 21 5.127519 CCCAGGAGTGATCATTTGCATAAAA 59.872 40.000 0.00 0.00 0.00 1.52
21 22 4.646040 CCCAGGAGTGATCATTTGCATAAA 59.354 41.667 0.00 0.00 0.00 1.40
22 23 4.209538 CCCAGGAGTGATCATTTGCATAA 58.790 43.478 0.00 0.00 0.00 1.90
23 24 3.202818 ACCCAGGAGTGATCATTTGCATA 59.797 43.478 0.00 0.00 0.00 3.14
24 25 2.024655 ACCCAGGAGTGATCATTTGCAT 60.025 45.455 0.00 0.00 0.00 3.96
25 26 1.355381 ACCCAGGAGTGATCATTTGCA 59.645 47.619 0.00 0.00 0.00 4.08
26 27 2.134789 ACCCAGGAGTGATCATTTGC 57.865 50.000 0.00 0.00 0.00 3.68
27 28 4.813027 CAAAACCCAGGAGTGATCATTTG 58.187 43.478 0.00 0.00 0.00 2.32
28 29 3.259123 GCAAAACCCAGGAGTGATCATTT 59.741 43.478 0.00 0.00 0.00 2.32
29 30 2.827921 GCAAAACCCAGGAGTGATCATT 59.172 45.455 0.00 0.00 0.00 2.57
30 31 2.042162 AGCAAAACCCAGGAGTGATCAT 59.958 45.455 0.00 0.00 0.00 2.45
31 32 1.425066 AGCAAAACCCAGGAGTGATCA 59.575 47.619 0.00 0.00 0.00 2.92
32 33 2.206576 AGCAAAACCCAGGAGTGATC 57.793 50.000 0.00 0.00 0.00 2.92
33 34 2.683211 AAGCAAAACCCAGGAGTGAT 57.317 45.000 0.00 0.00 0.00 3.06
34 35 3.586470 TTAAGCAAAACCCAGGAGTGA 57.414 42.857 0.00 0.00 0.00 3.41
35 36 3.636764 ACTTTAAGCAAAACCCAGGAGTG 59.363 43.478 0.00 0.00 0.00 3.51
36 37 3.636764 CACTTTAAGCAAAACCCAGGAGT 59.363 43.478 0.00 0.00 0.00 3.85
37 38 3.636764 ACACTTTAAGCAAAACCCAGGAG 59.363 43.478 0.00 0.00 0.00 3.69
38 39 3.637769 ACACTTTAAGCAAAACCCAGGA 58.362 40.909 0.00 0.00 0.00 3.86
39 40 4.400529 AACACTTTAAGCAAAACCCAGG 57.599 40.909 0.00 0.00 0.00 4.45
40 41 5.641636 ACAAAACACTTTAAGCAAAACCCAG 59.358 36.000 0.00 0.00 0.00 4.45
41 42 5.409826 CACAAAACACTTTAAGCAAAACCCA 59.590 36.000 0.00 0.00 0.00 4.51
42 43 5.639931 TCACAAAACACTTTAAGCAAAACCC 59.360 36.000 0.00 0.00 0.00 4.11
43 44 6.713792 TCACAAAACACTTTAAGCAAAACC 57.286 33.333 0.00 0.00 0.00 3.27
44 45 8.227119 ACAATCACAAAACACTTTAAGCAAAAC 58.773 29.630 0.00 0.00 0.00 2.43
45 46 8.226448 CACAATCACAAAACACTTTAAGCAAAA 58.774 29.630 0.00 0.00 0.00 2.44
46 47 7.623089 GCACAATCACAAAACACTTTAAGCAAA 60.623 33.333 0.00 0.00 0.00 3.68
47 48 6.183360 GCACAATCACAAAACACTTTAAGCAA 60.183 34.615 0.00 0.00 0.00 3.91
48 49 5.290643 GCACAATCACAAAACACTTTAAGCA 59.709 36.000 0.00 0.00 0.00 3.91
49 50 5.290643 TGCACAATCACAAAACACTTTAAGC 59.709 36.000 0.00 0.00 0.00 3.09
50 51 6.884096 TGCACAATCACAAAACACTTTAAG 57.116 33.333 0.00 0.00 0.00 1.85
51 52 7.840342 AATGCACAATCACAAAACACTTTAA 57.160 28.000 0.00 0.00 0.00 1.52
52 53 7.332926 ACAAATGCACAATCACAAAACACTTTA 59.667 29.630 0.00 0.00 0.00 1.85
53 54 6.149142 ACAAATGCACAATCACAAAACACTTT 59.851 30.769 0.00 0.00 0.00 2.66
54 55 5.642919 ACAAATGCACAATCACAAAACACTT 59.357 32.000 0.00 0.00 0.00 3.16
55 56 5.177326 ACAAATGCACAATCACAAAACACT 58.823 33.333 0.00 0.00 0.00 3.55
56 57 5.467902 ACAAATGCACAATCACAAAACAC 57.532 34.783 0.00 0.00 0.00 3.32
57 58 7.783090 AATACAAATGCACAATCACAAAACA 57.217 28.000 0.00 0.00 0.00 2.83
58 59 9.579610 GTTAATACAAATGCACAATCACAAAAC 57.420 29.630 0.00 0.00 0.00 2.43
59 60 9.539825 AGTTAATACAAATGCACAATCACAAAA 57.460 25.926 0.00 0.00 0.00 2.44
60 61 9.190858 GAGTTAATACAAATGCACAATCACAAA 57.809 29.630 0.00 0.00 0.00 2.83
61 62 8.355913 TGAGTTAATACAAATGCACAATCACAA 58.644 29.630 0.00 0.00 0.00 3.33
62 63 7.880105 TGAGTTAATACAAATGCACAATCACA 58.120 30.769 0.00 0.00 0.00 3.58
63 64 8.741101 TTGAGTTAATACAAATGCACAATCAC 57.259 30.769 0.00 0.00 0.00 3.06
64 65 7.541783 GCTTGAGTTAATACAAATGCACAATCA 59.458 33.333 0.00 0.00 0.00 2.57
65 66 7.009540 GGCTTGAGTTAATACAAATGCACAATC 59.990 37.037 0.00 0.00 0.00 2.67
66 67 6.813152 GGCTTGAGTTAATACAAATGCACAAT 59.187 34.615 0.00 0.00 0.00 2.71
67 68 6.155827 GGCTTGAGTTAATACAAATGCACAA 58.844 36.000 0.00 0.00 0.00 3.33
68 69 5.242615 TGGCTTGAGTTAATACAAATGCACA 59.757 36.000 0.00 0.00 0.00 4.57
69 70 5.708948 TGGCTTGAGTTAATACAAATGCAC 58.291 37.500 0.00 0.00 0.00 4.57
70 71 5.973899 TGGCTTGAGTTAATACAAATGCA 57.026 34.783 0.00 0.00 0.00 3.96
71 72 6.389906 ACTTGGCTTGAGTTAATACAAATGC 58.610 36.000 0.00 0.00 0.00 3.56
72 73 8.081633 TGAACTTGGCTTGAGTTAATACAAATG 58.918 33.333 2.38 0.00 37.46 2.32
73 74 8.177119 TGAACTTGGCTTGAGTTAATACAAAT 57.823 30.769 2.38 0.00 37.46 2.32
74 75 7.575414 TGAACTTGGCTTGAGTTAATACAAA 57.425 32.000 2.38 0.00 37.46 2.83
75 76 7.592938 CATGAACTTGGCTTGAGTTAATACAA 58.407 34.615 0.00 0.00 37.46 2.41
76 77 6.349280 GCATGAACTTGGCTTGAGTTAATACA 60.349 38.462 0.00 0.00 37.46 2.29
77 78 6.030228 GCATGAACTTGGCTTGAGTTAATAC 58.970 40.000 0.00 0.00 37.46 1.89
78 79 5.945784 AGCATGAACTTGGCTTGAGTTAATA 59.054 36.000 0.00 0.00 37.46 0.98
79 80 4.768968 AGCATGAACTTGGCTTGAGTTAAT 59.231 37.500 0.00 0.00 37.46 1.40
80 81 4.144297 AGCATGAACTTGGCTTGAGTTAA 58.856 39.130 0.00 0.00 37.46 2.01
81 82 3.754965 AGCATGAACTTGGCTTGAGTTA 58.245 40.909 0.00 0.00 37.46 2.24
82 83 2.590821 AGCATGAACTTGGCTTGAGTT 58.409 42.857 0.00 2.05 39.90 3.01
83 84 2.283145 AGCATGAACTTGGCTTGAGT 57.717 45.000 0.00 0.00 33.21 3.41
84 85 3.655276 AAAGCATGAACTTGGCTTGAG 57.345 42.857 0.00 0.00 46.39 3.02
85 86 5.726980 ATAAAAGCATGAACTTGGCTTGA 57.273 34.783 0.00 0.00 46.39 3.02
86 87 6.161381 AGAATAAAAGCATGAACTTGGCTTG 58.839 36.000 0.00 0.00 46.39 4.01
88 89 5.990120 AGAATAAAAGCATGAACTTGGCT 57.010 34.783 0.00 0.00 40.14 4.75
89 90 6.856895 AGTAGAATAAAAGCATGAACTTGGC 58.143 36.000 0.00 0.00 0.00 4.52
90 91 8.273780 AGAGTAGAATAAAAGCATGAACTTGG 57.726 34.615 0.00 0.00 0.00 3.61
91 92 9.552114 CAAGAGTAGAATAAAAGCATGAACTTG 57.448 33.333 0.00 0.00 0.00 3.16
92 93 9.289782 ACAAGAGTAGAATAAAAGCATGAACTT 57.710 29.630 0.00 0.00 0.00 2.66
93 94 8.725148 CACAAGAGTAGAATAAAAGCATGAACT 58.275 33.333 0.00 0.00 0.00 3.01
94 95 8.507249 ACACAAGAGTAGAATAAAAGCATGAAC 58.493 33.333 0.00 0.00 0.00 3.18
95 96 8.621532 ACACAAGAGTAGAATAAAAGCATGAA 57.378 30.769 0.00 0.00 0.00 2.57
96 97 7.877612 TGACACAAGAGTAGAATAAAAGCATGA 59.122 33.333 0.00 0.00 0.00 3.07
97 98 7.959651 GTGACACAAGAGTAGAATAAAAGCATG 59.040 37.037 0.00 0.00 0.00 4.06
98 99 7.880195 AGTGACACAAGAGTAGAATAAAAGCAT 59.120 33.333 8.59 0.00 0.00 3.79
99 100 7.217200 AGTGACACAAGAGTAGAATAAAAGCA 58.783 34.615 8.59 0.00 0.00 3.91
100 101 7.148557 GGAGTGACACAAGAGTAGAATAAAAGC 60.149 40.741 8.59 0.00 0.00 3.51
101 102 8.091449 AGGAGTGACACAAGAGTAGAATAAAAG 58.909 37.037 8.59 0.00 0.00 2.27
102 103 7.963532 AGGAGTGACACAAGAGTAGAATAAAA 58.036 34.615 8.59 0.00 0.00 1.52
103 104 7.540474 AGGAGTGACACAAGAGTAGAATAAA 57.460 36.000 8.59 0.00 0.00 1.40
104 105 8.824756 ATAGGAGTGACACAAGAGTAGAATAA 57.175 34.615 8.59 0.00 0.00 1.40
105 106 9.916360 TTATAGGAGTGACACAAGAGTAGAATA 57.084 33.333 8.59 0.00 0.00 1.75
106 107 8.824756 TTATAGGAGTGACACAAGAGTAGAAT 57.175 34.615 8.59 0.00 0.00 2.40
107 108 8.824756 ATTATAGGAGTGACACAAGAGTAGAA 57.175 34.615 8.59 0.00 0.00 2.10
108 109 7.502895 GGATTATAGGAGTGACACAAGAGTAGA 59.497 40.741 8.59 0.00 0.00 2.59
109 110 7.285629 TGGATTATAGGAGTGACACAAGAGTAG 59.714 40.741 8.59 0.00 0.00 2.57
110 111 7.123383 TGGATTATAGGAGTGACACAAGAGTA 58.877 38.462 8.59 0.00 0.00 2.59
111 112 5.958380 TGGATTATAGGAGTGACACAAGAGT 59.042 40.000 8.59 0.00 0.00 3.24
112 113 6.471233 TGGATTATAGGAGTGACACAAGAG 57.529 41.667 8.59 0.00 0.00 2.85
113 114 6.867519 TTGGATTATAGGAGTGACACAAGA 57.132 37.500 8.59 0.00 0.00 3.02
114 115 7.331026 TCTTTGGATTATAGGAGTGACACAAG 58.669 38.462 8.59 0.00 0.00 3.16
115 116 7.180229 TCTCTTTGGATTATAGGAGTGACACAA 59.820 37.037 8.59 0.00 0.00 3.33
116 117 6.667848 TCTCTTTGGATTATAGGAGTGACACA 59.332 38.462 8.59 0.00 0.00 3.72
117 118 6.981559 GTCTCTTTGGATTATAGGAGTGACAC 59.018 42.308 0.00 0.00 31.56 3.67
118 119 6.098409 GGTCTCTTTGGATTATAGGAGTGACA 59.902 42.308 0.00 0.00 32.36 3.58
119 120 6.098409 TGGTCTCTTTGGATTATAGGAGTGAC 59.902 42.308 0.00 0.00 0.00 3.67
120 121 6.098409 GTGGTCTCTTTGGATTATAGGAGTGA 59.902 42.308 0.00 0.00 0.00 3.41
121 122 6.284459 GTGGTCTCTTTGGATTATAGGAGTG 58.716 44.000 0.00 0.00 0.00 3.51
122 123 5.069251 CGTGGTCTCTTTGGATTATAGGAGT 59.931 44.000 0.00 0.00 0.00 3.85
123 124 5.069251 ACGTGGTCTCTTTGGATTATAGGAG 59.931 44.000 0.00 0.00 0.00 3.69
124 125 4.960469 ACGTGGTCTCTTTGGATTATAGGA 59.040 41.667 0.00 0.00 0.00 2.94
125 126 5.277857 ACGTGGTCTCTTTGGATTATAGG 57.722 43.478 0.00 0.00 0.00 2.57
126 127 5.921408 GCTACGTGGTCTCTTTGGATTATAG 59.079 44.000 0.00 0.00 0.00 1.31
127 128 5.597182 AGCTACGTGGTCTCTTTGGATTATA 59.403 40.000 0.00 0.00 0.00 0.98
128 129 4.406003 AGCTACGTGGTCTCTTTGGATTAT 59.594 41.667 0.00 0.00 0.00 1.28
129 130 3.767673 AGCTACGTGGTCTCTTTGGATTA 59.232 43.478 0.00 0.00 0.00 1.75
130 131 2.567615 AGCTACGTGGTCTCTTTGGATT 59.432 45.455 0.00 0.00 0.00 3.01
131 132 2.180276 AGCTACGTGGTCTCTTTGGAT 58.820 47.619 0.00 0.00 0.00 3.41
132 133 1.629043 AGCTACGTGGTCTCTTTGGA 58.371 50.000 0.00 0.00 0.00 3.53
133 134 2.028930 AGAAGCTACGTGGTCTCTTTGG 60.029 50.000 0.00 0.00 0.00 3.28
134 135 3.246619 GAGAAGCTACGTGGTCTCTTTG 58.753 50.000 10.97 0.00 0.00 2.77
135 136 2.891580 TGAGAAGCTACGTGGTCTCTTT 59.108 45.455 16.81 0.00 0.00 2.52
136 137 2.515854 TGAGAAGCTACGTGGTCTCTT 58.484 47.619 16.81 5.73 0.00 2.85
137 138 2.201921 TGAGAAGCTACGTGGTCTCT 57.798 50.000 16.81 11.40 0.00 3.10
138 139 3.003897 CCTATGAGAAGCTACGTGGTCTC 59.996 52.174 11.24 11.24 0.00 3.36
139 140 2.952978 CCTATGAGAAGCTACGTGGTCT 59.047 50.000 0.00 0.00 0.00 3.85
140 141 2.544069 GCCTATGAGAAGCTACGTGGTC 60.544 54.545 0.00 0.00 0.00 4.02
141 142 1.409427 GCCTATGAGAAGCTACGTGGT 59.591 52.381 0.00 0.00 0.00 4.16
142 143 1.409064 TGCCTATGAGAAGCTACGTGG 59.591 52.381 0.00 0.00 0.00 4.94
143 144 2.871182 TGCCTATGAGAAGCTACGTG 57.129 50.000 0.00 0.00 0.00 4.49
144 145 3.887621 TTTGCCTATGAGAAGCTACGT 57.112 42.857 0.00 0.00 0.00 3.57
145 146 5.986135 AGTTATTTGCCTATGAGAAGCTACG 59.014 40.000 0.00 0.00 0.00 3.51
146 147 7.793927 AAGTTATTTGCCTATGAGAAGCTAC 57.206 36.000 0.00 0.00 0.00 3.58
147 148 9.547753 CTAAAGTTATTTGCCTATGAGAAGCTA 57.452 33.333 0.00 0.00 0.00 3.32
148 149 7.500559 CCTAAAGTTATTTGCCTATGAGAAGCT 59.499 37.037 0.00 0.00 0.00 3.74
149 150 7.499232 TCCTAAAGTTATTTGCCTATGAGAAGC 59.501 37.037 0.00 0.00 0.00 3.86
150 151 8.964476 TCCTAAAGTTATTTGCCTATGAGAAG 57.036 34.615 0.00 0.00 0.00 2.85
151 152 9.561069 GATCCTAAAGTTATTTGCCTATGAGAA 57.439 33.333 0.00 0.00 0.00 2.87
152 153 8.713971 TGATCCTAAAGTTATTTGCCTATGAGA 58.286 33.333 0.00 0.00 0.00 3.27
153 154 8.908786 TGATCCTAAAGTTATTTGCCTATGAG 57.091 34.615 0.00 0.00 0.00 2.90
154 155 7.445402 GCTGATCCTAAAGTTATTTGCCTATGA 59.555 37.037 0.00 0.00 0.00 2.15
155 156 7.229306 TGCTGATCCTAAAGTTATTTGCCTATG 59.771 37.037 0.00 0.00 0.00 2.23
156 157 7.290061 TGCTGATCCTAAAGTTATTTGCCTAT 58.710 34.615 0.00 0.00 0.00 2.57
157 158 6.658849 TGCTGATCCTAAAGTTATTTGCCTA 58.341 36.000 0.00 0.00 0.00 3.93
158 159 5.509498 TGCTGATCCTAAAGTTATTTGCCT 58.491 37.500 0.00 0.00 0.00 4.75
159 160 5.835113 TGCTGATCCTAAAGTTATTTGCC 57.165 39.130 0.00 0.00 0.00 4.52
165 166 9.944376 GAACCATATATGCTGATCCTAAAGTTA 57.056 33.333 7.24 0.00 0.00 2.24
166 167 8.664079 AGAACCATATATGCTGATCCTAAAGTT 58.336 33.333 7.24 1.81 0.00 2.66
167 168 8.212259 AGAACCATATATGCTGATCCTAAAGT 57.788 34.615 7.24 0.00 0.00 2.66
168 169 8.316946 TGAGAACCATATATGCTGATCCTAAAG 58.683 37.037 7.24 0.00 0.00 1.85
169 170 8.206126 TGAGAACCATATATGCTGATCCTAAA 57.794 34.615 7.24 0.00 0.00 1.85
170 171 7.797121 TGAGAACCATATATGCTGATCCTAA 57.203 36.000 7.24 0.00 0.00 2.69
171 172 7.984859 ATGAGAACCATATATGCTGATCCTA 57.015 36.000 7.24 0.00 32.72 2.94
172 173 6.887886 ATGAGAACCATATATGCTGATCCT 57.112 37.500 7.24 0.00 32.72 3.24
173 174 9.453572 TTTAATGAGAACCATATATGCTGATCC 57.546 33.333 7.24 0.00 34.45 3.36
199 200 9.760077 CACGTATAGGAGAAGTTTAACCATAAT 57.240 33.333 0.00 0.00 0.00 1.28
200 201 8.970020 TCACGTATAGGAGAAGTTTAACCATAA 58.030 33.333 0.00 0.00 0.00 1.90
201 202 8.523915 TCACGTATAGGAGAAGTTTAACCATA 57.476 34.615 0.00 0.00 0.00 2.74
202 203 7.414222 TCACGTATAGGAGAAGTTTAACCAT 57.586 36.000 0.00 0.00 0.00 3.55
203 204 6.839124 TCACGTATAGGAGAAGTTTAACCA 57.161 37.500 0.00 0.00 0.00 3.67
204 205 7.486647 TGATCACGTATAGGAGAAGTTTAACC 58.513 38.462 0.00 0.00 0.00 2.85
205 206 9.530633 AATGATCACGTATAGGAGAAGTTTAAC 57.469 33.333 0.00 0.00 0.00 2.01
207 208 9.529325 CAAATGATCACGTATAGGAGAAGTTTA 57.471 33.333 0.00 0.00 0.00 2.01
208 209 7.495934 CCAAATGATCACGTATAGGAGAAGTTT 59.504 37.037 0.00 0.00 0.00 2.66
209 210 6.986817 CCAAATGATCACGTATAGGAGAAGTT 59.013 38.462 0.00 0.00 0.00 2.66
210 211 6.323996 TCCAAATGATCACGTATAGGAGAAGT 59.676 38.462 0.00 0.00 0.00 3.01
211 212 6.749139 TCCAAATGATCACGTATAGGAGAAG 58.251 40.000 0.00 0.00 0.00 2.85
212 213 6.724893 TCCAAATGATCACGTATAGGAGAA 57.275 37.500 0.00 0.00 0.00 2.87
213 214 6.097696 TGTTCCAAATGATCACGTATAGGAGA 59.902 38.462 0.00 0.00 0.00 3.71
214 215 6.280643 TGTTCCAAATGATCACGTATAGGAG 58.719 40.000 0.00 0.00 0.00 3.69
215 216 6.228616 TGTTCCAAATGATCACGTATAGGA 57.771 37.500 0.00 0.00 0.00 2.94
216 217 6.705825 TCATGTTCCAAATGATCACGTATAGG 59.294 38.462 0.00 0.00 0.00 2.57
217 218 7.713764 TCATGTTCCAAATGATCACGTATAG 57.286 36.000 0.00 0.00 0.00 1.31
218 219 8.675705 AATCATGTTCCAAATGATCACGTATA 57.324 30.769 0.00 0.00 42.58 1.47
219 220 7.572523 AATCATGTTCCAAATGATCACGTAT 57.427 32.000 0.00 0.00 42.58 3.06
220 221 7.768582 ACTAATCATGTTCCAAATGATCACGTA 59.231 33.333 0.00 0.00 42.58 3.57
221 222 5.902613 AATCATGTTCCAAATGATCACGT 57.097 34.783 0.00 0.00 42.58 4.49
222 223 7.019774 ACTAATCATGTTCCAAATGATCACG 57.980 36.000 0.00 0.00 42.58 4.35
236 237 9.840427 CGGAAAGAAAAACAATACTAATCATGT 57.160 29.630 0.00 0.00 0.00 3.21
237 238 9.840427 ACGGAAAGAAAAACAATACTAATCATG 57.160 29.630 0.00 0.00 0.00 3.07
238 239 9.840427 CACGGAAAGAAAAACAATACTAATCAT 57.160 29.630 0.00 0.00 0.00 2.45
239 240 8.293867 CCACGGAAAGAAAAACAATACTAATCA 58.706 33.333 0.00 0.00 0.00 2.57
240 241 7.753580 CCCACGGAAAGAAAAACAATACTAATC 59.246 37.037 0.00 0.00 0.00 1.75
241 242 7.309560 CCCCACGGAAAGAAAAACAATACTAAT 60.310 37.037 0.00 0.00 0.00 1.73
242 243 6.016108 CCCCACGGAAAGAAAAACAATACTAA 60.016 38.462 0.00 0.00 0.00 2.24
243 244 5.474189 CCCCACGGAAAGAAAAACAATACTA 59.526 40.000 0.00 0.00 0.00 1.82
244 245 4.279922 CCCCACGGAAAGAAAAACAATACT 59.720 41.667 0.00 0.00 0.00 2.12
245 246 4.038282 ACCCCACGGAAAGAAAAACAATAC 59.962 41.667 0.00 0.00 0.00 1.89
246 247 4.216708 ACCCCACGGAAAGAAAAACAATA 58.783 39.130 0.00 0.00 0.00 1.90
247 248 3.035363 ACCCCACGGAAAGAAAAACAAT 58.965 40.909 0.00 0.00 0.00 2.71
248 249 2.427812 GACCCCACGGAAAGAAAAACAA 59.572 45.455 0.00 0.00 0.00 2.83
249 250 2.025898 GACCCCACGGAAAGAAAAACA 58.974 47.619 0.00 0.00 0.00 2.83
250 251 2.025898 TGACCCCACGGAAAGAAAAAC 58.974 47.619 0.00 0.00 0.00 2.43
251 252 2.438800 TGACCCCACGGAAAGAAAAA 57.561 45.000 0.00 0.00 0.00 1.94
252 253 2.235016 CATGACCCCACGGAAAGAAAA 58.765 47.619 0.00 0.00 0.00 2.29
253 254 1.904287 CATGACCCCACGGAAAGAAA 58.096 50.000 0.00 0.00 0.00 2.52
254 255 0.608035 GCATGACCCCACGGAAAGAA 60.608 55.000 0.00 0.00 0.00 2.52
255 256 1.002624 GCATGACCCCACGGAAAGA 60.003 57.895 0.00 0.00 0.00 2.52
256 257 0.680921 ATGCATGACCCCACGGAAAG 60.681 55.000 0.00 0.00 0.00 2.62
257 258 0.964860 CATGCATGACCCCACGGAAA 60.965 55.000 22.59 0.00 0.00 3.13
258 259 1.378382 CATGCATGACCCCACGGAA 60.378 57.895 22.59 0.00 0.00 4.30
259 260 2.271821 CATGCATGACCCCACGGA 59.728 61.111 22.59 0.00 0.00 4.69
260 261 3.520862 GCATGCATGACCCCACGG 61.521 66.667 30.64 0.20 0.00 4.94
261 262 2.751036 TGCATGCATGACCCCACG 60.751 61.111 30.64 1.01 0.00 4.94
262 263 1.679977 AGTGCATGCATGACCCCAC 60.680 57.895 30.64 24.94 0.00 4.61
263 264 1.679641 CAGTGCATGCATGACCCCA 60.680 57.895 30.64 15.32 0.00 4.96
264 265 1.660560 GACAGTGCATGCATGACCCC 61.661 60.000 30.64 12.74 0.00 4.95
265 266 0.679002 AGACAGTGCATGCATGACCC 60.679 55.000 30.64 15.66 0.00 4.46
266 267 1.131883 GAAGACAGTGCATGCATGACC 59.868 52.381 30.64 18.15 0.00 4.02
267 268 1.808343 TGAAGACAGTGCATGCATGAC 59.192 47.619 30.64 22.45 0.00 3.06
268 269 2.188062 TGAAGACAGTGCATGCATGA 57.812 45.000 30.64 12.48 0.00 3.07
269 270 2.030628 TGTTGAAGACAGTGCATGCATG 60.031 45.455 25.64 22.70 33.40 4.06
270 271 2.232399 TGTTGAAGACAGTGCATGCAT 58.768 42.857 25.64 8.04 33.40 3.96
271 272 1.677942 TGTTGAAGACAGTGCATGCA 58.322 45.000 18.46 18.46 33.40 3.96
272 273 2.606308 CCTTGTTGAAGACAGTGCATGC 60.606 50.000 11.82 11.82 39.94 4.06
273 274 2.620115 ACCTTGTTGAAGACAGTGCATG 59.380 45.455 0.00 0.00 39.94 4.06
274 275 2.880890 GACCTTGTTGAAGACAGTGCAT 59.119 45.455 0.00 0.00 39.94 3.96
275 276 2.092968 AGACCTTGTTGAAGACAGTGCA 60.093 45.455 0.00 0.00 39.94 4.57
276 277 2.545946 GAGACCTTGTTGAAGACAGTGC 59.454 50.000 0.00 0.00 39.94 4.40
277 278 3.134458 GGAGACCTTGTTGAAGACAGTG 58.866 50.000 0.00 0.00 39.94 3.66
278 279 3.041946 AGGAGACCTTGTTGAAGACAGT 58.958 45.455 0.00 0.00 39.94 3.55
279 280 3.760580 AGGAGACCTTGTTGAAGACAG 57.239 47.619 0.00 0.00 39.94 3.51
290 291 2.304180 CCACATGACTCAAGGAGACCTT 59.696 50.000 0.00 0.00 45.88 3.50
291 292 1.905215 CCACATGACTCAAGGAGACCT 59.095 52.381 0.00 0.00 33.87 3.85
292 293 1.625818 ACCACATGACTCAAGGAGACC 59.374 52.381 0.00 0.00 33.32 3.85
293 294 2.354203 GGACCACATGACTCAAGGAGAC 60.354 54.545 0.00 0.00 33.32 3.36
294 295 1.902508 GGACCACATGACTCAAGGAGA 59.097 52.381 0.00 0.00 33.32 3.71
295 296 1.905215 AGGACCACATGACTCAAGGAG 59.095 52.381 0.00 0.00 35.52 3.69
296 297 2.030027 AGGACCACATGACTCAAGGA 57.970 50.000 0.00 0.00 0.00 3.36
297 298 3.099905 TCTAGGACCACATGACTCAAGG 58.900 50.000 0.00 0.00 0.00 3.61
298 299 4.808414 TTCTAGGACCACATGACTCAAG 57.192 45.455 0.00 0.00 0.00 3.02
299 300 5.491070 CATTTCTAGGACCACATGACTCAA 58.509 41.667 0.00 0.00 0.00 3.02
300 301 4.623886 GCATTTCTAGGACCACATGACTCA 60.624 45.833 0.00 0.00 0.00 3.41
301 302 3.873952 GCATTTCTAGGACCACATGACTC 59.126 47.826 0.00 0.00 0.00 3.36
302 303 3.264193 TGCATTTCTAGGACCACATGACT 59.736 43.478 0.00 0.00 0.00 3.41
303 304 3.609853 TGCATTTCTAGGACCACATGAC 58.390 45.455 0.00 0.00 0.00 3.06
304 305 3.998913 TGCATTTCTAGGACCACATGA 57.001 42.857 0.00 0.00 0.00 3.07
305 306 4.201657 TCATGCATTTCTAGGACCACATG 58.798 43.478 0.00 0.00 35.99 3.21
306 307 4.508551 TCATGCATTTCTAGGACCACAT 57.491 40.909 0.00 0.00 0.00 3.21
307 308 3.998913 TCATGCATTTCTAGGACCACA 57.001 42.857 0.00 0.00 0.00 4.17
308 309 4.999950 CCTATCATGCATTTCTAGGACCAC 59.000 45.833 16.11 0.00 32.36 4.16
309 310 4.042062 CCCTATCATGCATTTCTAGGACCA 59.958 45.833 20.29 0.00 32.36 4.02
310 311 4.287067 TCCCTATCATGCATTTCTAGGACC 59.713 45.833 20.29 0.00 32.36 4.46
311 312 5.489792 TCCCTATCATGCATTTCTAGGAC 57.510 43.478 20.29 0.00 32.36 3.85
312 313 6.514012 TTTCCCTATCATGCATTTCTAGGA 57.486 37.500 20.29 12.07 32.36 2.94
313 314 6.774656 ACTTTTCCCTATCATGCATTTCTAGG 59.225 38.462 14.88 14.88 0.00 3.02
314 315 7.255381 CCACTTTTCCCTATCATGCATTTCTAG 60.255 40.741 0.00 0.00 0.00 2.43
315 316 6.547141 CCACTTTTCCCTATCATGCATTTCTA 59.453 38.462 0.00 0.00 0.00 2.10
316 317 5.361857 CCACTTTTCCCTATCATGCATTTCT 59.638 40.000 0.00 0.00 0.00 2.52
317 318 5.360714 TCCACTTTTCCCTATCATGCATTTC 59.639 40.000 0.00 0.00 0.00 2.17
318 319 5.271598 TCCACTTTTCCCTATCATGCATTT 58.728 37.500 0.00 0.00 0.00 2.32
319 320 4.870636 TCCACTTTTCCCTATCATGCATT 58.129 39.130 0.00 0.00 0.00 3.56
320 321 4.524802 TCCACTTTTCCCTATCATGCAT 57.475 40.909 0.00 0.00 0.00 3.96
321 322 4.314522 TTCCACTTTTCCCTATCATGCA 57.685 40.909 0.00 0.00 0.00 3.96
322 323 5.047377 TGTTTTCCACTTTTCCCTATCATGC 60.047 40.000 0.00 0.00 0.00 4.06
323 324 6.015519 TGTGTTTTCCACTTTTCCCTATCATG 60.016 38.462 0.00 0.00 44.81 3.07
324 325 6.074648 TGTGTTTTCCACTTTTCCCTATCAT 58.925 36.000 0.00 0.00 44.81 2.45
325 326 5.450453 TGTGTTTTCCACTTTTCCCTATCA 58.550 37.500 0.00 0.00 44.81 2.15
326 327 6.590234 ATGTGTTTTCCACTTTTCCCTATC 57.410 37.500 0.00 0.00 44.81 2.08
327 328 6.994421 AATGTGTTTTCCACTTTTCCCTAT 57.006 33.333 0.00 0.00 44.81 2.57
328 329 7.726291 TCATAATGTGTTTTCCACTTTTCCCTA 59.274 33.333 0.00 0.00 44.81 3.53
329 330 6.553100 TCATAATGTGTTTTCCACTTTTCCCT 59.447 34.615 0.00 0.00 44.81 4.20
330 331 6.754193 TCATAATGTGTTTTCCACTTTTCCC 58.246 36.000 0.00 0.00 44.81 3.97
331 332 7.095649 GCTTCATAATGTGTTTTCCACTTTTCC 60.096 37.037 0.00 0.00 44.81 3.13
332 333 7.653311 AGCTTCATAATGTGTTTTCCACTTTTC 59.347 33.333 0.00 0.00 44.81 2.29
333 334 7.439056 CAGCTTCATAATGTGTTTTCCACTTTT 59.561 33.333 0.00 0.00 44.81 2.27
334 335 6.925165 CAGCTTCATAATGTGTTTTCCACTTT 59.075 34.615 0.00 0.00 44.81 2.66
335 336 6.040842 ACAGCTTCATAATGTGTTTTCCACTT 59.959 34.615 0.00 0.00 44.81 3.16
336 337 5.536161 ACAGCTTCATAATGTGTTTTCCACT 59.464 36.000 0.00 0.00 44.81 4.00
337 338 5.772521 ACAGCTTCATAATGTGTTTTCCAC 58.227 37.500 0.00 0.00 44.78 4.02
338 339 6.040278 TCAACAGCTTCATAATGTGTTTTCCA 59.960 34.615 0.00 0.00 0.00 3.53
339 340 6.446318 TCAACAGCTTCATAATGTGTTTTCC 58.554 36.000 0.00 0.00 0.00 3.13
340 341 7.096065 GGTTCAACAGCTTCATAATGTGTTTTC 60.096 37.037 0.00 0.00 0.00 2.29
341 342 6.701400 GGTTCAACAGCTTCATAATGTGTTTT 59.299 34.615 0.00 0.00 0.00 2.43
342 343 6.215845 GGTTCAACAGCTTCATAATGTGTTT 58.784 36.000 0.00 0.00 0.00 2.83
343 344 5.562696 CGGTTCAACAGCTTCATAATGTGTT 60.563 40.000 0.00 0.00 0.00 3.32
344 345 4.083324 CGGTTCAACAGCTTCATAATGTGT 60.083 41.667 0.00 0.00 0.00 3.72
345 346 4.406069 CGGTTCAACAGCTTCATAATGTG 58.594 43.478 0.00 0.00 0.00 3.21
346 347 3.440173 CCGGTTCAACAGCTTCATAATGT 59.560 43.478 0.00 0.00 0.00 2.71
347 348 3.440173 ACCGGTTCAACAGCTTCATAATG 59.560 43.478 0.00 0.00 0.00 1.90
348 349 3.686016 ACCGGTTCAACAGCTTCATAAT 58.314 40.909 0.00 0.00 0.00 1.28
349 350 3.134574 ACCGGTTCAACAGCTTCATAA 57.865 42.857 0.00 0.00 0.00 1.90
350 351 2.851263 ACCGGTTCAACAGCTTCATA 57.149 45.000 0.00 0.00 0.00 2.15
351 352 2.851263 TACCGGTTCAACAGCTTCAT 57.149 45.000 15.04 0.00 0.00 2.57
352 353 2.422597 CATACCGGTTCAACAGCTTCA 58.577 47.619 15.04 0.00 0.00 3.02
353 354 1.737793 CCATACCGGTTCAACAGCTTC 59.262 52.381 15.04 0.00 0.00 3.86
354 355 1.613255 CCCATACCGGTTCAACAGCTT 60.613 52.381 15.04 0.00 0.00 3.74
355 356 0.035439 CCCATACCGGTTCAACAGCT 60.035 55.000 15.04 0.00 0.00 4.24
356 357 1.654023 GCCCATACCGGTTCAACAGC 61.654 60.000 15.04 5.23 0.00 4.40
465 466 1.877443 GTCTTTATTGGTGTGTGGCGT 59.123 47.619 0.00 0.00 0.00 5.68
573 574 1.894756 CTCCTCCTCGCCGGACTAG 60.895 68.421 5.05 0.00 36.69 2.57
632 634 2.031012 TGCACTTCGCCACCAGAG 59.969 61.111 0.00 0.00 41.33 3.35
633 635 2.031012 CTGCACTTCGCCACCAGA 59.969 61.111 0.00 0.00 41.33 3.86
665 667 3.239627 AACCTCCTCTCCCGAGCCA 62.240 63.158 0.00 0.00 35.90 4.75
692 694 4.994471 CACCTCCAGCAGCACGCA 62.994 66.667 0.00 0.00 46.13 5.24
777 795 1.328279 TGTCGTGTGAGGTGAGATGT 58.672 50.000 0.00 0.00 0.00 3.06
794 812 1.280710 TGGACCTGACAGTGTTGTTGT 59.719 47.619 0.00 0.00 37.76 3.32
797 815 0.180406 GGTGGACCTGACAGTGTTGT 59.820 55.000 0.00 0.00 41.18 3.32
817 835 1.952296 AGACAAACTGCAGCTTCTTGG 59.048 47.619 15.27 0.01 0.00 3.61
819 837 2.225467 GGAGACAAACTGCAGCTTCTT 58.775 47.619 15.27 0.00 36.93 2.52
851 869 0.179215 GCAATCAACAACCGAGAGCG 60.179 55.000 0.00 0.00 37.24 5.03
876 894 4.019231 GTCACCTCTCCTTCCTTTACCAAT 60.019 45.833 0.00 0.00 0.00 3.16
945 963 1.032014 GGACTTTCAGCACCTGCAAA 58.968 50.000 0.00 0.00 45.16 3.68
1018 1036 2.552315 CAAGCTTGTCCATTGTAACCGT 59.448 45.455 18.65 0.00 0.00 4.83
1022 1040 1.539388 CCGCAAGCTTGTCCATTGTAA 59.461 47.619 26.55 0.00 0.00 2.41
1024 1042 0.537143 TCCGCAAGCTTGTCCATTGT 60.537 50.000 26.55 0.00 0.00 2.71
1073 1091 0.917533 ATCAGCAGGTGCCTTCTCAT 59.082 50.000 0.00 0.00 43.38 2.90
1113 1131 0.978907 TCTTCTGCACCATCTCTGCA 59.021 50.000 0.00 0.00 42.42 4.41
1218 1236 4.159506 AGAGCATAGTCTTCCAGTGACTTC 59.840 45.833 1.67 0.00 41.45 3.01
1280 1298 4.608269 TGTGGCATTCCATTTCTTCCATA 58.392 39.130 0.00 0.00 45.62 2.74
1317 1335 5.065731 GGATAGAGAACTCAACAGCCAATTG 59.934 44.000 0.00 0.00 0.00 2.32
1327 1345 4.689062 ACAGAAGGGGATAGAGAACTCAA 58.311 43.478 4.64 0.00 0.00 3.02
1362 1380 1.076632 AGCAGTAGGGAGGTCCTCG 60.077 63.158 12.91 0.00 44.06 4.63
1382 1400 0.906066 TAACGCTGCCCATACCTCAA 59.094 50.000 0.00 0.00 0.00 3.02
1427 1445 5.009911 TCAATTTTGGAGACCAACATGACAG 59.990 40.000 0.00 0.00 43.82 3.51
1614 1632 3.720002 AGTCCAACCCCTTCAGAAACTTA 59.280 43.478 0.00 0.00 0.00 2.24
1666 1684 5.625311 GTGACAACAACTTAGCTTATTGCAC 59.375 40.000 0.00 0.00 45.94 4.57
1672 1690 7.948357 TCTCTTAGTGACAACAACTTAGCTTA 58.052 34.615 0.00 0.00 0.00 3.09
1678 1696 6.582636 TGACATCTCTTAGTGACAACAACTT 58.417 36.000 0.00 0.00 0.00 2.66
1684 1702 5.640783 CAGCAATGACATCTCTTAGTGACAA 59.359 40.000 0.00 0.00 0.00 3.18
1685 1703 5.173664 CAGCAATGACATCTCTTAGTGACA 58.826 41.667 0.00 0.00 0.00 3.58
1843 1861 0.840617 TTCAGTGGGGTTGTGCACTA 59.159 50.000 19.41 7.83 0.00 2.74
1859 1877 3.134623 TCTGCCTTTGTTGTCTCTCTTCA 59.865 43.478 0.00 0.00 0.00 3.02
1886 1904 2.697751 CCTCTGTAGCTGCCTCTGTAAT 59.302 50.000 0.00 0.00 0.00 1.89
1997 2015 6.379417 ACTCATGACAGATACATTCACTCTGA 59.621 38.462 5.84 0.00 38.96 3.27
2068 2086 1.902508 CCTCTTGTCTTGACCCTGCTA 59.097 52.381 0.00 0.00 0.00 3.49
2100 2118 1.598130 ACCAAACGCTGTCTCTGCC 60.598 57.895 0.00 0.00 0.00 4.85
2111 2129 3.354089 AATGAGCAAAGTCACCAAACG 57.646 42.857 0.00 0.00 0.00 3.60
2165 2184 2.513753 CAGCCCTATGGACAACAACAA 58.486 47.619 0.00 0.00 0.00 2.83
2171 2190 1.837439 CTACACCAGCCCTATGGACAA 59.163 52.381 0.00 0.00 43.57 3.18
2175 2194 2.224621 CCAATCTACACCAGCCCTATGG 60.225 54.545 0.00 0.00 46.47 2.74
2200 2220 3.996124 CGATGCCCCCGAGCCTAG 61.996 72.222 0.00 0.00 0.00 3.02
2204 2224 3.202706 GTTTCGATGCCCCCGAGC 61.203 66.667 0.00 0.00 37.35 5.03
2208 2228 1.404035 GTTACATGTTTCGATGCCCCC 59.596 52.381 2.30 0.00 0.00 5.40
2229 2249 8.621532 AGCATTCAAACTCTCTAACATTGTTA 57.378 30.769 8.86 8.86 0.00 2.41
2230 2250 7.516198 AGCATTCAAACTCTCTAACATTGTT 57.484 32.000 7.30 7.30 0.00 2.83
2266 2286 3.992943 AGTTCCATTGTACGAATGGGA 57.007 42.857 24.57 18.75 45.55 4.37
2271 2291 7.572353 GCAGTTTGAATAGTTCCATTGTACGAA 60.572 37.037 0.00 0.00 0.00 3.85
2366 2386 4.261994 GGAAAGCTGGAACATGCAAAACTA 60.262 41.667 0.00 0.00 38.20 2.24
2392 2412 6.537453 AGCACTCAATGACACTAGACTAAT 57.463 37.500 0.00 0.00 0.00 1.73
2459 2479 4.996793 TCCCATCTCCTGAATCAAACAAA 58.003 39.130 0.00 0.00 0.00 2.83
2460 2480 4.656100 TCCCATCTCCTGAATCAAACAA 57.344 40.909 0.00 0.00 0.00 2.83
2485 2505 1.617839 CTTCCCCAAGCCTCCTCCT 60.618 63.158 0.00 0.00 0.00 3.69
2501 2521 1.840635 GTCCTCTATGCCTGGTTCCTT 59.159 52.381 0.00 0.00 0.00 3.36
2577 2597 4.537135 TGCTTCCTTCTCTGTCGTAATT 57.463 40.909 0.00 0.00 0.00 1.40
2579 2599 4.537135 AATGCTTCCTTCTCTGTCGTAA 57.463 40.909 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.