Multiple sequence alignment - TraesCS4B01G343800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G343800 chr4B 100.000 8084 0 0 1 8084 637396979 637388896 0.000000e+00 14929.0
1 TraesCS4B01G343800 chr4B 81.921 177 24 6 2061 2235 347600018 347600188 8.460000e-30 143.0
2 TraesCS4B01G343800 chr5A 92.908 3821 153 52 3694 7458 676599510 676595752 0.000000e+00 5446.0
3 TraesCS4B01G343800 chr5A 95.601 2614 94 8 1033 3633 676602124 676599519 0.000000e+00 4170.0
4 TraesCS4B01G343800 chr5A 83.513 649 40 34 397 1010 676603212 676602596 1.980000e-150 544.0
5 TraesCS4B01G343800 chr5A 88.806 134 9 3 248 379 676603408 676603279 8.400000e-35 159.0
6 TraesCS4B01G343800 chr5A 93.103 87 4 1 7675 7759 171740662 171740576 8.520000e-25 126.0
7 TraesCS4B01G343800 chr5A 80.503 159 14 8 7480 7637 676595681 676595539 1.110000e-18 106.0
8 TraesCS4B01G343800 chr5A 82.278 79 8 5 7584 7660 457089349 457089275 6.770000e-06 63.9
9 TraesCS4B01G343800 chr5A 84.483 58 6 3 7575 7632 341688262 341688316 4.000000e-03 54.7
10 TraesCS4B01G343800 chr4D 92.657 3854 149 45 17 3788 497040171 497036370 0.000000e+00 5426.0
11 TraesCS4B01G343800 chr4D 94.017 3109 129 22 3804 6882 497036261 497033180 0.000000e+00 4658.0
12 TraesCS4B01G343800 chr4D 95.556 495 17 3 6964 7458 497033130 497032641 0.000000e+00 787.0
13 TraesCS4B01G343800 chr4D 90.393 229 8 6 7857 8084 497032184 497031969 1.030000e-73 289.0
14 TraesCS4B01G343800 chr4D 86.885 183 16 6 7760 7938 380190880 380190702 1.780000e-46 198.0
15 TraesCS4B01G343800 chr4D 86.885 183 16 6 7760 7938 427875080 427874902 1.780000e-46 198.0
16 TraesCS4B01G343800 chr4D 83.784 74 8 3 7580 7651 170225898 170225969 5.240000e-07 67.6
17 TraesCS4B01G343800 chr4A 78.797 349 48 13 1846 2187 721817840 721817511 2.290000e-50 211.0
18 TraesCS4B01G343800 chr2D 88.333 180 13 6 7760 7935 583241988 583242163 8.220000e-50 209.0
19 TraesCS4B01G343800 chr2D 84.722 72 7 3 7582 7651 410600671 410600740 1.460000e-07 69.4
20 TraesCS4B01G343800 chr2D 84.000 75 7 5 7584 7656 556200660 556200589 5.240000e-07 67.6
21 TraesCS4B01G343800 chr2D 84.483 58 5 4 7576 7632 286676198 286676252 4.000000e-03 54.7
22 TraesCS4B01G343800 chr7A 88.268 179 14 5 7760 7935 391240868 391241042 2.960000e-49 207.0
23 TraesCS4B01G343800 chr7A 86.250 80 9 1 7682 7759 318058210 318058131 1.450000e-12 86.1
24 TraesCS4B01G343800 chr7A 82.716 81 9 4 7584 7662 637915530 637915607 5.240000e-07 67.6
25 TraesCS4B01G343800 chr7D 87.778 180 14 6 7760 7935 81101596 81101771 3.820000e-48 204.0
26 TraesCS4B01G343800 chr7D 82.192 73 7 5 7582 7651 192371621 192371552 3.150000e-04 58.4
27 TraesCS4B01G343800 chr7D 85.455 55 4 4 7579 7632 593035320 593035269 4.000000e-03 54.7
28 TraesCS4B01G343800 chr6D 87.432 183 15 6 7760 7938 153360544 153360366 3.820000e-48 204.0
29 TraesCS4B01G343800 chr6D 87.709 179 14 6 7760 7934 181640865 181640691 1.380000e-47 202.0
30 TraesCS4B01G343800 chr6D 86.957 69 6 2 7585 7651 237375549 237375482 3.130000e-09 75.0
31 TraesCS4B01G343800 chr6B 87.778 180 14 6 7760 7935 526639326 526639501 3.820000e-48 204.0
32 TraesCS4B01G343800 chr6B 84.746 177 19 4 2061 2235 270820049 270820219 3.880000e-38 171.0
33 TraesCS4B01G343800 chr5D 87.432 183 15 6 7760 7938 111708022 111707844 3.820000e-48 204.0
34 TraesCS4B01G343800 chr2A 83.140 172 22 3 2063 2232 6492021 6492187 5.050000e-32 150.0
35 TraesCS4B01G343800 chr2A 85.455 55 4 4 7579 7632 329688177 329688126 4.000000e-03 54.7
36 TraesCS4B01G343800 chr2B 84.615 78 8 4 7581 7656 663366796 663366871 3.130000e-09 75.0
37 TraesCS4B01G343800 chr2B 85.455 55 4 4 7579 7632 306886216 306886165 4.000000e-03 54.7
38 TraesCS4B01G343800 chr7B 85.714 70 6 3 7584 7651 477814969 477814902 4.050000e-08 71.3
39 TraesCS4B01G343800 chr1B 85.714 70 6 2 7583 7650 211626909 211626976 4.050000e-08 71.3
40 TraesCS4B01G343800 chr1B 87.500 56 5 1 7579 7634 152953777 152953830 6.770000e-06 63.9
41 TraesCS4B01G343800 chr3B 87.273 55 4 3 7578 7632 245935618 245935567 8.760000e-05 60.2
42 TraesCS4B01G343800 chr1A 85.185 54 6 1 7579 7632 465505089 465505140 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G343800 chr4B 637388896 637396979 8083 True 14929 14929 100.00000 1 8084 1 chr4B.!!$R1 8083
1 TraesCS4B01G343800 chr5A 676595539 676603408 7869 True 2085 5446 88.26620 248 7637 5 chr5A.!!$R3 7389
2 TraesCS4B01G343800 chr4D 497031969 497040171 8202 True 2790 5426 93.15575 17 8084 4 chr4D.!!$R3 8067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 342 0.043053 CGTGCAGTGTGTCTGAAACG 60.043 55.000 0.00 4.54 46.27 3.60 F
439 496 0.693049 TCTCCTTGCCAAGTTCCTCC 59.307 55.000 3.37 0.00 0.00 4.30 F
580 644 0.750182 CCTGACTCGACTCCTCTCCC 60.750 65.000 0.00 0.00 0.00 4.30 F
1792 2383 1.147153 GAGCTGGCTGACATACCCC 59.853 63.158 0.00 0.00 0.00 4.95 F
2781 3372 0.680280 TAGCTCAGACGAGGGTGTCC 60.680 60.000 0.00 0.00 39.77 4.02 F
3412 4007 0.038166 TTGATGACCCCTTCAGTGCC 59.962 55.000 0.00 0.00 37.77 5.01 F
5435 6170 0.832135 TCGTGAGCTTTCCTCCTGGT 60.832 55.000 0.00 0.00 39.98 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2796 0.388520 TCACAATCTCACCGCTCGTG 60.389 55.000 0.00 0.00 44.50 4.35 R
2415 3006 5.104527 TGCCATTAGCTTATCTTGGTAGTGT 60.105 40.000 0.00 0.00 44.23 3.55 R
2781 3372 2.332063 AGTGTGACAACCTGTCCAAG 57.668 50.000 4.42 0.00 46.40 3.61 R
2802 3393 0.030638 GCAACTCTTCTTGCCGCAAA 59.969 50.000 7.33 0.00 40.68 3.68 R
3974 4663 1.067669 TCTCCATCAGAATCTTCGCCG 59.932 52.381 0.00 0.00 0.00 6.46 R
5465 6200 0.687354 AACAGAACGGCCTGTGAGAT 59.313 50.000 11.79 0.00 45.82 2.75 R
7543 8364 0.108281 GTTCCTACCAACGGAGCTCC 60.108 60.000 23.79 23.79 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.027751 GAGCATCTACGGTCGGGC 59.972 66.667 0.00 0.00 0.00 6.13
90 91 3.077519 GCATCTACGGTCGGGCACT 62.078 63.158 0.00 0.00 0.00 4.40
91 92 1.515954 CATCTACGGTCGGGCACTT 59.484 57.895 0.00 0.00 0.00 3.16
93 94 2.001361 ATCTACGGTCGGGCACTTCG 62.001 60.000 0.00 0.00 0.00 3.79
103 104 1.737008 GGCACTTCGAACCCGTCTC 60.737 63.158 0.00 0.00 37.05 3.36
107 108 1.525619 CACTTCGAACCCGTCTCAAAC 59.474 52.381 0.00 0.00 37.05 2.93
118 119 1.505425 GTCTCAAACGTTTAGGCGGT 58.495 50.000 14.20 0.00 35.98 5.68
119 120 1.869132 GTCTCAAACGTTTAGGCGGTT 59.131 47.619 14.20 0.00 43.08 4.44
141 143 2.258591 CGGTCAGACCTGTCACGG 59.741 66.667 17.95 0.00 35.66 4.94
142 144 2.265904 CGGTCAGACCTGTCACGGA 61.266 63.158 17.95 0.00 35.66 4.69
147 149 2.737252 GTCAGACCTGTCACGGAATTTC 59.263 50.000 0.00 0.00 0.00 2.17
152 154 1.606994 CCTGTCACGGAATTTCGACCA 60.607 52.381 14.41 5.15 0.00 4.02
153 155 2.139917 CTGTCACGGAATTTCGACCAA 58.860 47.619 14.41 0.00 0.00 3.67
154 156 2.139917 TGTCACGGAATTTCGACCAAG 58.860 47.619 14.41 0.00 0.00 3.61
156 158 0.168128 CACGGAATTTCGACCAAGGC 59.832 55.000 14.41 0.00 0.00 4.35
157 159 1.296056 ACGGAATTTCGACCAAGGCG 61.296 55.000 14.41 0.00 0.00 5.52
159 161 0.675522 GGAATTTCGACCAAGGCGGA 60.676 55.000 0.00 0.00 38.63 5.54
173 176 2.813907 AGGCGGATGTAGATGCTCTAT 58.186 47.619 0.00 0.00 30.76 1.98
186 189 5.118990 AGATGCTCTATTTGTGCACGTATT 58.881 37.500 13.13 2.13 46.07 1.89
190 193 5.872617 TGCTCTATTTGTGCACGTATTACTT 59.127 36.000 13.13 0.00 39.83 2.24
191 194 7.036829 TGCTCTATTTGTGCACGTATTACTTA 58.963 34.615 13.13 0.00 39.83 2.24
230 233 6.907206 TTAACGCAACTTTAGTACAACACT 57.093 33.333 0.00 0.00 41.62 3.55
242 245 2.400467 ACAACACTGGAGGGAGTACT 57.600 50.000 0.00 0.00 0.00 2.73
243 246 2.690840 ACAACACTGGAGGGAGTACTT 58.309 47.619 0.00 0.00 0.00 2.24
244 247 3.853207 ACAACACTGGAGGGAGTACTTA 58.147 45.455 0.00 0.00 0.00 2.24
245 248 3.833070 ACAACACTGGAGGGAGTACTTAG 59.167 47.826 0.00 0.00 0.00 2.18
247 250 4.942363 ACACTGGAGGGAGTACTTAGTA 57.058 45.455 0.00 0.00 0.00 1.82
249 252 6.587560 ACACTGGAGGGAGTACTTAGTATA 57.412 41.667 0.00 0.00 0.00 1.47
250 253 7.164233 ACACTGGAGGGAGTACTTAGTATAT 57.836 40.000 0.00 0.00 0.00 0.86
251 254 7.005296 ACACTGGAGGGAGTACTTAGTATATG 58.995 42.308 0.00 0.00 0.00 1.78
253 256 7.724506 CACTGGAGGGAGTACTTAGTATATGAA 59.275 40.741 0.00 0.00 0.00 2.57
261 268 8.910944 GGAGTACTTAGTATATGAAACACTGGA 58.089 37.037 0.00 0.00 0.00 3.86
278 285 4.065321 CTGGAAGTGGCAGTAGAATAGG 57.935 50.000 0.00 0.00 0.00 2.57
279 286 2.771943 TGGAAGTGGCAGTAGAATAGGG 59.228 50.000 0.00 0.00 0.00 3.53
280 287 3.039011 GGAAGTGGCAGTAGAATAGGGA 58.961 50.000 0.00 0.00 0.00 4.20
281 288 3.454812 GGAAGTGGCAGTAGAATAGGGAA 59.545 47.826 0.00 0.00 0.00 3.97
282 289 4.443621 GAAGTGGCAGTAGAATAGGGAAC 58.556 47.826 0.00 0.00 0.00 3.62
287 294 2.822764 CAGTAGAATAGGGAACGGTGC 58.177 52.381 0.00 0.00 0.00 5.01
303 311 1.151668 GTGCTGGTACACTCTTGCAG 58.848 55.000 0.00 0.00 37.58 4.41
334 342 0.043053 CGTGCAGTGTGTCTGAAACG 60.043 55.000 0.00 4.54 46.27 3.60
429 486 2.747855 CCCGCAACTCTCCTTGCC 60.748 66.667 0.00 0.00 43.15 4.52
430 487 2.032528 CCGCAACTCTCCTTGCCA 59.967 61.111 0.00 0.00 43.15 4.92
431 488 1.600636 CCGCAACTCTCCTTGCCAA 60.601 57.895 0.00 0.00 43.15 4.52
432 489 1.580845 CCGCAACTCTCCTTGCCAAG 61.581 60.000 0.00 0.00 43.15 3.61
433 490 0.886490 CGCAACTCTCCTTGCCAAGT 60.886 55.000 3.37 0.00 43.15 3.16
434 491 1.322442 GCAACTCTCCTTGCCAAGTT 58.678 50.000 3.37 0.00 40.68 2.66
435 492 1.268079 GCAACTCTCCTTGCCAAGTTC 59.732 52.381 3.37 0.00 40.68 3.01
436 493 1.882623 CAACTCTCCTTGCCAAGTTCC 59.117 52.381 3.37 0.00 29.78 3.62
437 494 1.439543 ACTCTCCTTGCCAAGTTCCT 58.560 50.000 3.37 0.00 0.00 3.36
438 495 1.349357 ACTCTCCTTGCCAAGTTCCTC 59.651 52.381 3.37 0.00 0.00 3.71
439 496 0.693049 TCTCCTTGCCAAGTTCCTCC 59.307 55.000 3.37 0.00 0.00 4.30
470 532 1.928769 GTCGCTCGTCATCGTCGTC 60.929 63.158 0.00 0.00 38.33 4.20
471 533 3.006336 CGCTCGTCATCGTCGTCG 61.006 66.667 0.00 0.00 38.33 5.12
472 534 2.097918 GCTCGTCATCGTCGTCGT 59.902 61.111 1.33 0.00 38.33 4.34
473 535 1.928769 GCTCGTCATCGTCGTCGTC 60.929 63.158 1.33 0.00 38.33 4.20
474 536 1.296722 CTCGTCATCGTCGTCGTCC 60.297 63.158 1.33 0.00 38.33 4.79
475 537 2.277120 CGTCATCGTCGTCGTCCC 60.277 66.667 1.33 0.00 38.33 4.46
476 538 2.277120 GTCATCGTCGTCGTCCCG 60.277 66.667 1.33 0.00 38.33 5.14
477 539 2.743538 TCATCGTCGTCGTCCCGT 60.744 61.111 1.33 0.00 38.33 5.28
478 540 2.576053 CATCGTCGTCGTCCCGTG 60.576 66.667 1.33 0.00 38.33 4.94
479 541 4.471726 ATCGTCGTCGTCCCGTGC 62.472 66.667 1.33 0.00 38.33 5.34
516 578 1.786407 AAAAACCGTCCCCTCCTCCC 61.786 60.000 0.00 0.00 0.00 4.30
519 581 4.862823 CCGTCCCCTCCTCCCCTC 62.863 77.778 0.00 0.00 0.00 4.30
520 582 4.862823 CGTCCCCTCCTCCCCTCC 62.863 77.778 0.00 0.00 0.00 4.30
521 583 4.500826 GTCCCCTCCTCCCCTCCC 62.501 77.778 0.00 0.00 0.00 4.30
524 586 4.179599 CCCTCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
548 610 1.470112 GGAAAACCAACACCAACACGG 60.470 52.381 0.00 0.00 42.50 4.94
580 644 0.750182 CCTGACTCGACTCCTCTCCC 60.750 65.000 0.00 0.00 0.00 4.30
585 649 2.123640 CGACTCCTCTCCCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
716 792 2.782222 CGGGGATCGGCGAAGAAGA 61.782 63.158 15.93 0.00 34.75 2.87
774 859 2.436115 CGGGCCCGAGTTCTTTCC 60.436 66.667 41.82 0.00 42.83 3.13
810 909 2.760159 CCCCGCTGCATTTACACGG 61.760 63.158 0.00 0.00 43.44 4.94
896 996 2.485122 CTTTGTTCCCATCCGCGC 59.515 61.111 0.00 0.00 0.00 6.86
1605 2196 3.734735 GTGTCGACTTGGAGTTTAGTGAC 59.265 47.826 17.92 0.00 0.00 3.67
1719 2310 3.934962 GCCGGGATCCTCAGCCTC 61.935 72.222 12.58 0.00 0.00 4.70
1725 2316 1.219124 GATCCTCAGCCTCGCAACA 59.781 57.895 0.00 0.00 0.00 3.33
1743 2334 1.193323 CACTCTCATGGCTCAGTCCT 58.807 55.000 0.00 0.00 0.00 3.85
1744 2335 1.554160 CACTCTCATGGCTCAGTCCTT 59.446 52.381 0.00 0.00 0.00 3.36
1792 2383 1.147153 GAGCTGGCTGACATACCCC 59.853 63.158 0.00 0.00 0.00 4.95
1809 2400 1.673665 CCTGCTGGCTCACAAGGAC 60.674 63.158 0.00 0.00 29.97 3.85
2049 2640 2.158608 CCCCCATGAAGGTTACATCCTC 60.159 54.545 0.00 0.00 36.74 3.71
2205 2796 1.601759 TGCCTCAAAGCAGAGCCAC 60.602 57.895 0.00 0.00 38.00 5.01
2415 3006 2.598394 GTGGCCAAGCTGCAGGAA 60.598 61.111 17.12 0.09 0.00 3.36
2781 3372 0.680280 TAGCTCAGACGAGGGTGTCC 60.680 60.000 0.00 0.00 39.77 4.02
3058 3649 1.665679 CTGGCCAAGTAAGTACATGCG 59.334 52.381 7.01 0.00 0.00 4.73
3090 3685 4.319177 AGTTCATGCTAACTTGAGTGACC 58.681 43.478 0.00 0.00 36.26 4.02
3093 3688 2.433868 TGCTAACTTGAGTGACCGTC 57.566 50.000 0.00 0.00 0.00 4.79
3157 3752 3.689161 GTGGTACAGCAGCATATGTTTCA 59.311 43.478 4.29 0.00 41.80 2.69
3229 3824 3.499737 CCAATGGACAGACCGCGC 61.500 66.667 0.00 0.00 42.61 6.86
3265 3860 0.327591 AGGCTTGCTCCCTGAAGAAG 59.672 55.000 0.00 0.00 0.00 2.85
3319 3914 0.461548 TCATCGGTGACAGAGGCATC 59.538 55.000 0.00 0.00 0.00 3.91
3412 4007 0.038166 TTGATGACCCCTTCAGTGCC 59.962 55.000 0.00 0.00 37.77 5.01
3472 4067 9.250624 GTCTGTATAGTTGTTGCCTTATTCTAG 57.749 37.037 0.00 0.00 0.00 2.43
3474 4069 9.601217 CTGTATAGTTGTTGCCTTATTCTAGTT 57.399 33.333 0.00 0.00 0.00 2.24
3475 4070 9.595823 TGTATAGTTGTTGCCTTATTCTAGTTC 57.404 33.333 0.00 0.00 0.00 3.01
3479 4074 8.100508 AGTTGTTGCCTTATTCTAGTTCTTTC 57.899 34.615 0.00 0.00 0.00 2.62
3482 4077 8.099364 TGTTGCCTTATTCTAGTTCTTTCTTG 57.901 34.615 0.00 0.00 0.00 3.02
3499 4094 2.872245 TCTTGAAGGTGCTTCTGTTTCG 59.128 45.455 0.00 0.00 40.73 3.46
3644 4239 8.725148 ACATTTTTCTCACAATCTAAGCACTAG 58.275 33.333 0.00 0.00 0.00 2.57
3645 4240 8.725148 CATTTTTCTCACAATCTAAGCACTAGT 58.275 33.333 0.00 0.00 0.00 2.57
3646 4241 9.944376 ATTTTTCTCACAATCTAAGCACTAGTA 57.056 29.630 0.00 0.00 0.00 1.82
3647 4242 8.758633 TTTTCTCACAATCTAAGCACTAGTAC 57.241 34.615 0.00 0.00 0.00 2.73
3648 4243 7.462571 TTCTCACAATCTAAGCACTAGTACA 57.537 36.000 0.00 0.00 0.00 2.90
3714 4309 9.774742 CTAACAGCCTATTAAGTTGTTCAATTC 57.225 33.333 0.00 0.00 33.34 2.17
3718 4313 6.653320 AGCCTATTAAGTTGTTCAATTCGACA 59.347 34.615 0.00 0.00 0.00 4.35
3720 4315 8.609176 GCCTATTAAGTTGTTCAATTCGACATA 58.391 33.333 0.00 0.00 0.00 2.29
3789 4384 7.068341 GCATGAAAGTTTCGCTATCTTCTATG 58.932 38.462 10.92 6.11 0.00 2.23
3802 4478 9.335891 CGCTATCTTCTATGTACAATACTTCTG 57.664 37.037 0.00 0.00 0.00 3.02
3840 4529 5.159209 CCTTGATCACTCATTTGTGCTTTC 58.841 41.667 0.00 0.00 37.81 2.62
3855 4544 6.040209 TGTGCTTTCTTTTTATCATGGCAT 57.960 33.333 0.00 0.00 0.00 4.40
3947 4636 1.818642 ATGCTCTGGTTTCTGCTCAC 58.181 50.000 0.00 0.00 0.00 3.51
3962 4651 3.860641 TGCTCACAATGAAGCTATCGAA 58.139 40.909 12.02 0.00 0.00 3.71
3974 4663 5.296780 TGAAGCTATCGAAACCATGGATTTC 59.703 40.000 21.47 21.05 33.52 2.17
3998 4687 5.486526 GGCGAAGATTCTGATGGAGATATT 58.513 41.667 0.00 0.00 0.00 1.28
4229 4918 3.487372 GGAAGCCTACAAAGGTTCACTT 58.513 45.455 5.23 0.00 45.64 3.16
4250 4939 3.719268 ATACCACTCATTGTCTTGGCA 57.281 42.857 0.00 0.00 31.76 4.92
4562 5251 4.767578 AGATCATGCTCTTGCTCCTAAA 57.232 40.909 0.00 0.00 40.48 1.85
4571 5260 5.068987 TGCTCTTGCTCCTAAATTGTGTTTT 59.931 36.000 0.00 0.00 40.48 2.43
4576 5265 6.463995 TGCTCCTAAATTGTGTTTTTCACT 57.536 33.333 0.00 0.00 46.27 3.41
4577 5266 6.503524 TGCTCCTAAATTGTGTTTTTCACTC 58.496 36.000 0.00 0.00 46.27 3.51
4578 5267 6.321181 TGCTCCTAAATTGTGTTTTTCACTCT 59.679 34.615 0.00 0.00 46.27 3.24
4579 5268 7.147915 TGCTCCTAAATTGTGTTTTTCACTCTT 60.148 33.333 0.00 0.00 46.27 2.85
4580 5269 7.168135 GCTCCTAAATTGTGTTTTTCACTCTTG 59.832 37.037 0.00 0.00 46.27 3.02
4581 5270 6.978080 TCCTAAATTGTGTTTTTCACTCTTGC 59.022 34.615 0.00 0.00 46.27 4.01
4696 5385 1.152673 CAGGCTAGGGGGATTTGCC 60.153 63.158 0.00 0.00 43.52 4.52
4826 5515 8.141909 AGGTAAATTGCTAAACTTTCAGGTTTC 58.858 33.333 0.00 0.00 39.66 2.78
4835 5525 8.188799 GCTAAACTTTCAGGTTTCTTTTAGTGT 58.811 33.333 0.00 0.00 39.66 3.55
4862 5574 9.762381 TGACATTAACCTGGGATACTTAATTTT 57.238 29.630 0.00 0.00 0.00 1.82
4885 5597 5.739752 TTCAATGGAGATCGTAATGCAAG 57.260 39.130 0.00 0.00 0.00 4.01
4942 5661 6.191661 TGAATCAATAAAAGAACTATGCGCG 58.808 36.000 0.00 0.00 0.00 6.86
4955 5677 0.875474 ATGCGCGCATAAATTTGGCC 60.875 50.000 42.74 4.50 34.49 5.36
4964 5686 3.055891 GCATAAATTTGGCCACCTCTGTT 60.056 43.478 3.88 0.00 0.00 3.16
4988 5713 9.223099 GTTAGTTAACTAGCCAATTAACCAGAA 57.777 33.333 16.33 0.00 40.60 3.02
5269 6004 4.651045 TGCTGCTACTATCAGAGGATTTGA 59.349 41.667 0.00 0.00 34.89 2.69
5276 6011 7.256119 GCTACTATCAGAGGATTTGATCAGGAA 60.256 40.741 0.00 0.00 36.68 3.36
5417 6152 3.075866 GCTTTCTGCATGGCAATACTC 57.924 47.619 0.00 0.00 38.41 2.59
5435 6170 0.832135 TCGTGAGCTTTCCTCCTGGT 60.832 55.000 0.00 0.00 39.98 4.00
5465 6200 7.418337 TGAACCAAGTATGTCTTATCTGCTA 57.582 36.000 0.00 0.00 34.66 3.49
5473 6208 8.109705 AGTATGTCTTATCTGCTATCTCACAG 57.890 38.462 0.00 0.00 35.15 3.66
5485 6220 1.334160 TCTCACAGGCCGTTCTGTTA 58.666 50.000 0.00 0.00 44.74 2.41
5642 6379 2.939103 GCTGTCACATATGGACTCAACC 59.061 50.000 18.94 0.00 36.26 3.77
5725 6462 7.194278 TCTCTGTTGAGCGTATTTATCAGTAC 58.806 38.462 0.00 0.00 40.03 2.73
5767 6504 5.948162 AGCACCACTGATTATTGAGAATTGT 59.052 36.000 0.00 0.00 0.00 2.71
5777 6514 1.153429 GAGAATTGTCGTCCCCCGG 60.153 63.158 0.00 0.00 37.11 5.73
5876 6616 7.652105 TGACTATCCATTTGCTCTTCGTTATAC 59.348 37.037 0.00 0.00 0.00 1.47
6061 6803 5.269189 GGAAAAAGATTGGGATTGTAGGGA 58.731 41.667 0.00 0.00 0.00 4.20
6117 6859 4.142665 GCTCTTTTCCGTCTAATTGAACCC 60.143 45.833 0.00 0.00 0.00 4.11
6118 6860 4.975631 TCTTTTCCGTCTAATTGAACCCA 58.024 39.130 0.00 0.00 0.00 4.51
6142 6884 5.590259 ACAGGAGGGAAAATTATCATTGACG 59.410 40.000 0.00 0.00 0.00 4.35
6171 6913 0.881118 TTTCTGCGATTGGCCTTCAC 59.119 50.000 3.32 0.00 42.61 3.18
6479 7222 3.811497 TCAAAGAGTGAGCATGACACTTG 59.189 43.478 20.95 16.64 33.15 3.16
6642 7390 0.597568 TTTTGGTGCTTGATGAGGCG 59.402 50.000 0.00 0.00 0.00 5.52
6747 7495 0.673644 CACACAGGATCCCAACGGTC 60.674 60.000 8.55 0.00 0.00 4.79
6813 7561 4.062293 CCTTCACACGATTAACCAAGTCA 58.938 43.478 0.00 0.00 0.00 3.41
6814 7562 4.695455 CCTTCACACGATTAACCAAGTCAT 59.305 41.667 0.00 0.00 0.00 3.06
6818 7566 5.995282 TCACACGATTAACCAAGTCATCTTT 59.005 36.000 0.00 0.00 0.00 2.52
6819 7567 6.147164 TCACACGATTAACCAAGTCATCTTTC 59.853 38.462 0.00 0.00 0.00 2.62
6821 7569 5.411361 CACGATTAACCAAGTCATCTTTCCA 59.589 40.000 0.00 0.00 0.00 3.53
6823 7571 5.447818 CGATTAACCAAGTCATCTTTCCAGC 60.448 44.000 0.00 0.00 0.00 4.85
6825 7573 1.089920 CCAAGTCATCTTTCCAGCCG 58.910 55.000 0.00 0.00 0.00 5.52
6827 7575 2.354704 CCAAGTCATCTTTCCAGCCGTA 60.355 50.000 0.00 0.00 0.00 4.02
6828 7576 2.932614 CAAGTCATCTTTCCAGCCGTAG 59.067 50.000 0.00 0.00 0.00 3.51
6829 7577 1.134670 AGTCATCTTTCCAGCCGTAGC 60.135 52.381 0.00 0.00 40.32 3.58
6892 7647 7.342769 TGAATTATCTGAGTAACGCTCCTAA 57.657 36.000 0.00 0.00 43.48 2.69
6911 7666 5.355910 TCCTAACCAAACAGTGTTCTTTGTC 59.644 40.000 9.40 0.00 0.00 3.18
6912 7667 5.124776 CCTAACCAAACAGTGTTCTTTGTCA 59.875 40.000 9.40 0.00 0.00 3.58
6913 7668 4.434713 ACCAAACAGTGTTCTTTGTCAC 57.565 40.909 9.40 0.00 35.13 3.67
6914 7669 3.119990 ACCAAACAGTGTTCTTTGTCACG 60.120 43.478 9.40 0.00 39.25 4.35
6916 7671 1.014352 ACAGTGTTCTTTGTCACGCC 58.986 50.000 0.00 0.00 39.25 5.68
6919 7674 1.144276 TGTTCTTTGTCACGCCCGA 59.856 52.632 0.00 0.00 0.00 5.14
6920 7675 0.462225 TGTTCTTTGTCACGCCCGAA 60.462 50.000 0.00 0.00 0.00 4.30
6921 7676 0.658897 GTTCTTTGTCACGCCCGAAA 59.341 50.000 0.00 0.00 0.00 3.46
6922 7677 1.064357 GTTCTTTGTCACGCCCGAAAA 59.936 47.619 0.00 0.00 0.00 2.29
6923 7678 0.658897 TCTTTGTCACGCCCGAAAAC 59.341 50.000 0.00 0.00 0.00 2.43
6924 7679 0.661020 CTTTGTCACGCCCGAAAACT 59.339 50.000 0.00 0.00 0.00 2.66
6925 7680 1.064952 CTTTGTCACGCCCGAAAACTT 59.935 47.619 0.00 0.00 0.00 2.66
6926 7681 0.378962 TTGTCACGCCCGAAAACTTG 59.621 50.000 0.00 0.00 0.00 3.16
6927 7682 1.281656 GTCACGCCCGAAAACTTGG 59.718 57.895 0.00 0.00 0.00 3.61
6934 7689 3.865700 CCGAAAACTTGGGAGCAAC 57.134 52.632 0.00 0.00 0.00 4.17
6935 7690 1.028905 CCGAAAACTTGGGAGCAACA 58.971 50.000 0.00 0.00 0.00 3.33
6942 7697 0.318107 CTTGGGAGCAACAAACAGCG 60.318 55.000 0.00 0.00 35.48 5.18
6943 7698 1.733402 TTGGGAGCAACAAACAGCGG 61.733 55.000 0.00 0.00 35.48 5.52
6972 7727 6.575162 GTGAATTCACCTGGTCTTGTTTAT 57.425 37.500 25.26 0.00 40.85 1.40
6973 7728 6.981722 GTGAATTCACCTGGTCTTGTTTATT 58.018 36.000 25.26 0.00 40.85 1.40
6976 7731 8.141268 TGAATTCACCTGGTCTTGTTTATTTTC 58.859 33.333 3.38 0.00 0.00 2.29
7096 7851 7.265599 AGCTGTATATAGAGAGAGAGGCTTA 57.734 40.000 10.97 0.00 0.00 3.09
7097 7852 7.872138 AGCTGTATATAGAGAGAGAGGCTTAT 58.128 38.462 10.97 0.00 0.00 1.73
7098 7853 8.336235 AGCTGTATATAGAGAGAGAGGCTTATT 58.664 37.037 10.97 0.00 0.00 1.40
7146 7901 1.382146 TGGGAGGTAAGGTAGCCGG 60.382 63.158 0.00 0.00 0.00 6.13
7206 7974 1.219213 ACCAGACAGGAGGATAGGAGG 59.781 57.143 0.00 0.00 41.22 4.30
7253 8022 1.361668 CGCGTTCCCTGACCTGAATG 61.362 60.000 0.00 0.00 0.00 2.67
7388 8157 1.207811 CCCCTTGCATGATGGGAAAAC 59.792 52.381 16.56 0.00 40.97 2.43
7394 8163 2.030363 TGCATGATGGGAAAACGAACAC 60.030 45.455 0.00 0.00 0.00 3.32
7449 8218 3.915437 TTCCTTTTTGGCGTCAGATTC 57.085 42.857 0.00 0.00 35.26 2.52
7502 8323 8.743714 TCTGATATATGTATGCAAGGTAGTCAG 58.256 37.037 0.00 0.00 0.00 3.51
7543 8364 2.407090 TCACAGCTCTTCGTTGTCATG 58.593 47.619 0.00 0.00 34.60 3.07
7552 8373 1.079819 CGTTGTCATGGAGCTCCGT 60.080 57.895 27.43 25.04 39.43 4.69
7569 8390 0.236449 CGTTGGTAGGAACGCAAACC 59.764 55.000 0.00 0.00 41.98 3.27
7597 8418 8.485578 AGGATCTTAACTACTCCCTCTATTTG 57.514 38.462 0.00 0.00 0.00 2.32
7656 8477 9.862371 TGAAACAAACACACTAAAATGTAATGT 57.138 25.926 0.00 0.00 33.09 2.71
7701 8522 8.337739 TCTCTACTCCTATAAAAGACTCTTGGT 58.662 37.037 0.00 0.00 0.00 3.67
7702 8523 8.294954 TCTACTCCTATAAAAGACTCTTGGTG 57.705 38.462 0.00 0.00 0.00 4.17
7703 8524 8.114102 TCTACTCCTATAAAAGACTCTTGGTGA 58.886 37.037 0.00 0.00 0.00 4.02
7704 8525 7.741554 ACTCCTATAAAAGACTCTTGGTGAT 57.258 36.000 0.00 0.00 0.00 3.06
7705 8526 7.560368 ACTCCTATAAAAGACTCTTGGTGATG 58.440 38.462 0.00 0.00 0.00 3.07
7706 8527 7.400339 ACTCCTATAAAAGACTCTTGGTGATGA 59.600 37.037 0.00 0.00 0.00 2.92
7707 8528 8.324191 TCCTATAAAAGACTCTTGGTGATGAT 57.676 34.615 0.00 0.00 0.00 2.45
7708 8529 8.206867 TCCTATAAAAGACTCTTGGTGATGATG 58.793 37.037 0.00 0.00 0.00 3.07
7709 8530 7.443575 CCTATAAAAGACTCTTGGTGATGATGG 59.556 40.741 0.00 0.00 0.00 3.51
7710 8531 4.647564 AAAGACTCTTGGTGATGATGGT 57.352 40.909 0.00 0.00 0.00 3.55
7711 8532 3.623906 AGACTCTTGGTGATGATGGTG 57.376 47.619 0.00 0.00 0.00 4.17
7712 8533 2.909006 AGACTCTTGGTGATGATGGTGT 59.091 45.455 0.00 0.00 0.00 4.16
7713 8534 3.005554 GACTCTTGGTGATGATGGTGTG 58.994 50.000 0.00 0.00 0.00 3.82
7714 8535 2.373169 ACTCTTGGTGATGATGGTGTGT 59.627 45.455 0.00 0.00 0.00 3.72
7715 8536 3.005554 CTCTTGGTGATGATGGTGTGTC 58.994 50.000 0.00 0.00 0.00 3.67
7716 8537 2.639347 TCTTGGTGATGATGGTGTGTCT 59.361 45.455 0.00 0.00 0.00 3.41
7717 8538 3.837731 TCTTGGTGATGATGGTGTGTCTA 59.162 43.478 0.00 0.00 0.00 2.59
7718 8539 4.471025 TCTTGGTGATGATGGTGTGTCTAT 59.529 41.667 0.00 0.00 0.00 1.98
7719 8540 4.406648 TGGTGATGATGGTGTGTCTATC 57.593 45.455 0.00 0.00 35.10 2.08
7720 8541 3.774216 TGGTGATGATGGTGTGTCTATCA 59.226 43.478 0.00 0.00 45.46 2.15
7725 8546 4.736126 TGATGGTGTGTCTATCATTCGT 57.264 40.909 0.00 0.00 38.73 3.85
7726 8547 4.682787 TGATGGTGTGTCTATCATTCGTC 58.317 43.478 0.00 0.00 38.73 4.20
7727 8548 4.159506 TGATGGTGTGTCTATCATTCGTCA 59.840 41.667 0.00 0.00 38.73 4.35
7728 8549 4.736126 TGGTGTGTCTATCATTCGTCAT 57.264 40.909 0.00 0.00 0.00 3.06
7729 8550 5.084818 TGGTGTGTCTATCATTCGTCATT 57.915 39.130 0.00 0.00 0.00 2.57
7730 8551 5.487433 TGGTGTGTCTATCATTCGTCATTT 58.513 37.500 0.00 0.00 0.00 2.32
7731 8552 5.580691 TGGTGTGTCTATCATTCGTCATTTC 59.419 40.000 0.00 0.00 0.00 2.17
7732 8553 5.812642 GGTGTGTCTATCATTCGTCATTTCT 59.187 40.000 0.00 0.00 0.00 2.52
7733 8554 6.237942 GGTGTGTCTATCATTCGTCATTTCTG 60.238 42.308 0.00 0.00 0.00 3.02
7734 8555 6.531594 GTGTGTCTATCATTCGTCATTTCTGA 59.468 38.462 0.00 0.00 0.00 3.27
7735 8556 7.223582 GTGTGTCTATCATTCGTCATTTCTGAT 59.776 37.037 0.00 0.00 32.98 2.90
7736 8557 7.436376 TGTGTCTATCATTCGTCATTTCTGATC 59.564 37.037 0.00 0.00 32.98 2.92
7737 8558 7.436376 GTGTCTATCATTCGTCATTTCTGATCA 59.564 37.037 0.00 0.00 32.98 2.92
7775 8660 5.862924 ATGACTGTATCTTGAAACCAACG 57.137 39.130 0.00 0.00 0.00 4.10
7778 8663 4.699637 ACTGTATCTTGAAACCAACGACA 58.300 39.130 0.00 0.00 0.00 4.35
7786 8671 1.003233 GAAACCAACGACATCCCTCCT 59.997 52.381 0.00 0.00 0.00 3.69
7790 8677 0.108138 CAACGACATCCCTCCTCACC 60.108 60.000 0.00 0.00 0.00 4.02
7792 8679 0.684805 ACGACATCCCTCCTCACCTC 60.685 60.000 0.00 0.00 0.00 3.85
7802 8689 3.341823 CCTCCTCACCTCATCAAAACAG 58.658 50.000 0.00 0.00 0.00 3.16
7803 8690 3.244700 CCTCCTCACCTCATCAAAACAGT 60.245 47.826 0.00 0.00 0.00 3.55
7804 8691 4.020218 CCTCCTCACCTCATCAAAACAGTA 60.020 45.833 0.00 0.00 0.00 2.74
7806 8693 5.305585 TCCTCACCTCATCAAAACAGTAAC 58.694 41.667 0.00 0.00 0.00 2.50
7809 8696 5.361427 TCACCTCATCAAAACAGTAACGAA 58.639 37.500 0.00 0.00 0.00 3.85
7810 8697 5.818336 TCACCTCATCAAAACAGTAACGAAA 59.182 36.000 0.00 0.00 0.00 3.46
7876 8763 7.441458 AGTGACATACCAAAACTAGAGTGTTTC 59.559 37.037 0.00 0.00 38.98 2.78
7929 8816 4.460263 AGTACTTTGGATCTGTTGCAACA 58.540 39.130 29.36 29.36 35.14 3.33
7935 8822 1.225855 GATCTGTTGCAACACACGGA 58.774 50.000 27.96 22.46 34.70 4.69
7936 8823 0.944386 ATCTGTTGCAACACACGGAC 59.056 50.000 27.96 0.45 34.70 4.79
7937 8824 0.391793 TCTGTTGCAACACACGGACA 60.392 50.000 27.96 5.77 34.70 4.02
7938 8825 0.027979 CTGTTGCAACACACGGACAG 59.972 55.000 27.96 12.17 34.70 3.51
7939 8826 0.675208 TGTTGCAACACACGGACAGT 60.675 50.000 27.96 0.00 33.17 3.55
7940 8827 0.027586 GTTGCAACACACGGACAGTC 59.972 55.000 24.52 0.00 0.00 3.51
7941 8828 1.425267 TTGCAACACACGGACAGTCG 61.425 55.000 0.00 0.00 0.00 4.18
7942 8829 2.594962 GCAACACACGGACAGTCGG 61.595 63.158 6.57 6.57 0.00 4.79
7943 8830 1.066752 CAACACACGGACAGTCGGA 59.933 57.895 14.73 0.00 0.00 4.55
7960 8847 4.219944 AGTCGGACACATTGCTAGTTTAGA 59.780 41.667 11.27 0.00 0.00 2.10
8069 8957 8.506140 AATTGTATGATAAAATTGCGATTCCG 57.494 30.769 0.00 0.00 39.16 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.166691 ACCGTAGATGCTCTTAAGACTTTAA 57.833 36.000 0.00 0.00 0.00 1.52
59 60 6.457934 CGACCGTAGATGCTCTTAAGACTTTA 60.458 42.308 0.00 0.00 0.00 1.85
65 66 2.287668 CCCGACCGTAGATGCTCTTAAG 60.288 54.545 0.00 0.00 0.00 1.85
80 81 2.741211 GGTTCGAAGTGCCCGACC 60.741 66.667 0.00 0.00 35.61 4.79
87 88 1.525619 GTTTGAGACGGGTTCGAAGTG 59.474 52.381 0.00 0.00 40.11 3.16
103 104 0.662077 GCCAACCGCCTAAACGTTTG 60.662 55.000 23.46 12.69 35.50 2.93
118 119 3.636231 CAGGTCTGACCGGGCCAA 61.636 66.667 20.49 0.00 44.90 4.52
119 120 4.954118 ACAGGTCTGACCGGGCCA 62.954 66.667 26.80 0.78 44.90 5.36
126 127 2.457366 AATTCCGTGACAGGTCTGAC 57.543 50.000 4.84 0.00 0.00 3.51
127 128 2.609491 CGAAATTCCGTGACAGGTCTGA 60.609 50.000 4.84 0.00 0.00 3.27
128 129 1.726791 CGAAATTCCGTGACAGGTCTG 59.273 52.381 0.65 0.00 0.00 3.51
129 130 1.616865 TCGAAATTCCGTGACAGGTCT 59.383 47.619 0.65 0.00 0.00 3.85
130 131 1.725164 GTCGAAATTCCGTGACAGGTC 59.275 52.381 0.00 0.00 0.00 3.85
131 132 1.607251 GGTCGAAATTCCGTGACAGGT 60.607 52.381 0.00 0.00 33.04 4.00
132 133 1.076332 GGTCGAAATTCCGTGACAGG 58.924 55.000 0.00 0.00 33.04 4.00
141 143 1.064060 CATCCGCCTTGGTCGAAATTC 59.936 52.381 0.00 0.00 39.52 2.17
142 144 1.094785 CATCCGCCTTGGTCGAAATT 58.905 50.000 0.00 0.00 39.52 1.82
147 149 0.389391 ATCTACATCCGCCTTGGTCG 59.611 55.000 0.00 0.00 39.52 4.79
152 154 3.997672 GAGCATCTACATCCGCCTT 57.002 52.632 0.00 0.00 0.00 4.35
209 212 4.034742 CCAGTGTTGTACTAAAGTTGCGTT 59.965 41.667 0.00 0.00 37.60 4.84
215 218 4.228824 TCCCTCCAGTGTTGTACTAAAGT 58.771 43.478 0.00 0.00 37.60 2.66
216 219 4.283722 ACTCCCTCCAGTGTTGTACTAAAG 59.716 45.833 0.00 0.00 37.60 1.85
228 231 7.403837 TCATATACTAAGTACTCCCTCCAGT 57.596 40.000 0.00 0.00 0.00 4.00
230 233 8.063153 TGTTTCATATACTAAGTACTCCCTCCA 58.937 37.037 0.00 0.00 0.00 3.86
242 245 6.821665 GCCACTTCCAGTGTTTCATATACTAA 59.178 38.462 3.30 0.00 44.50 2.24
243 246 6.070481 TGCCACTTCCAGTGTTTCATATACTA 60.070 38.462 3.30 0.00 44.50 1.82
244 247 5.186198 GCCACTTCCAGTGTTTCATATACT 58.814 41.667 3.30 0.00 44.50 2.12
245 248 4.941263 TGCCACTTCCAGTGTTTCATATAC 59.059 41.667 3.30 0.00 44.50 1.47
247 250 4.012374 CTGCCACTTCCAGTGTTTCATAT 58.988 43.478 3.30 0.00 44.50 1.78
249 252 2.233271 CTGCCACTTCCAGTGTTTCAT 58.767 47.619 3.30 0.00 44.50 2.57
250 253 1.064758 ACTGCCACTTCCAGTGTTTCA 60.065 47.619 3.30 0.00 44.50 2.69
251 254 1.680338 ACTGCCACTTCCAGTGTTTC 58.320 50.000 3.30 0.00 44.50 2.78
253 256 2.047061 TCTACTGCCACTTCCAGTGTT 58.953 47.619 4.44 0.00 44.50 3.32
261 268 3.118738 CGTTCCCTATTCTACTGCCACTT 60.119 47.826 0.00 0.00 0.00 3.16
278 285 0.669625 GAGTGTACCAGCACCGTTCC 60.670 60.000 0.00 0.00 40.04 3.62
279 286 0.317479 AGAGTGTACCAGCACCGTTC 59.683 55.000 0.00 0.00 40.04 3.95
280 287 0.756903 AAGAGTGTACCAGCACCGTT 59.243 50.000 0.00 0.00 40.04 4.44
281 288 0.033504 CAAGAGTGTACCAGCACCGT 59.966 55.000 0.00 0.00 40.04 4.83
282 289 1.291877 GCAAGAGTGTACCAGCACCG 61.292 60.000 0.00 0.00 40.04 4.94
287 294 0.038251 TCGCTGCAAGAGTGTACCAG 60.038 55.000 0.00 0.00 34.36 4.00
303 311 3.964729 CTGCACGTGAACGCATCGC 62.965 63.158 22.23 0.00 44.43 4.58
334 342 0.388134 TAGTCTGGCGACGCTTGTTC 60.388 55.000 20.77 2.65 44.93 3.18
404 461 1.228154 AGAGTTGCGGGTGGGTTTC 60.228 57.895 0.00 0.00 0.00 2.78
429 486 6.106673 ACATTTATAGACACGGAGGAACTTG 58.893 40.000 0.00 0.00 41.55 3.16
430 487 6.295719 ACATTTATAGACACGGAGGAACTT 57.704 37.500 0.00 0.00 41.55 2.66
432 489 4.738740 CGACATTTATAGACACGGAGGAAC 59.261 45.833 0.00 0.00 0.00 3.62
433 490 4.735578 GCGACATTTATAGACACGGAGGAA 60.736 45.833 0.00 0.00 0.00 3.36
434 491 3.243301 GCGACATTTATAGACACGGAGGA 60.243 47.826 0.00 0.00 0.00 3.71
435 492 3.050619 GCGACATTTATAGACACGGAGG 58.949 50.000 0.00 0.00 0.00 4.30
436 493 3.966154 AGCGACATTTATAGACACGGAG 58.034 45.455 0.00 0.00 0.00 4.63
437 494 3.547413 CGAGCGACATTTATAGACACGGA 60.547 47.826 0.00 0.00 0.00 4.69
438 495 2.719556 CGAGCGACATTTATAGACACGG 59.280 50.000 0.00 0.00 0.00 4.94
439 496 3.360533 ACGAGCGACATTTATAGACACG 58.639 45.455 0.00 0.00 0.00 4.49
516 578 0.038310 GGTTTTCCACTGAGGGGAGG 59.962 60.000 2.55 0.00 40.31 4.30
518 580 2.953188 TGGTTTTCCACTGAGGGGA 58.047 52.632 0.00 0.00 46.22 4.81
548 610 2.609610 TCAGGTGGTGGTAGGGGC 60.610 66.667 0.00 0.00 0.00 5.80
716 792 4.308458 TGCTACGTGTGGGCGCTT 62.308 61.111 7.64 0.00 34.88 4.68
761 846 1.066071 GGAGGAAGGAAAGAACTCGGG 60.066 57.143 0.00 0.00 0.00 5.14
774 859 2.892425 GCGCACGGATGGAGGAAG 60.892 66.667 0.30 0.00 0.00 3.46
810 909 2.688446 GGGAGATTCGGTGGATTTTTCC 59.312 50.000 0.00 0.00 0.00 3.13
1719 2310 0.671472 TGAGCCATGAGAGTGTTGCG 60.671 55.000 0.00 0.00 0.00 4.85
1725 2316 1.949799 AAGGACTGAGCCATGAGAGT 58.050 50.000 0.00 0.00 0.00 3.24
1743 2334 2.282180 GCCCCAACCGAGAGCAAA 60.282 61.111 0.00 0.00 0.00 3.68
1744 2335 4.344865 GGCCCCAACCGAGAGCAA 62.345 66.667 0.00 0.00 0.00 3.91
1792 2383 1.673665 GGTCCTTGTGAGCCAGCAG 60.674 63.158 0.00 0.00 35.38 4.24
1809 2400 0.602638 TGTAGCAGAACTTGGCACGG 60.603 55.000 0.00 0.00 0.00 4.94
2049 2640 3.117794 TGATACGAAAAATACGGAGGCG 58.882 45.455 0.00 0.00 34.93 5.52
2205 2796 0.388520 TCACAATCTCACCGCTCGTG 60.389 55.000 0.00 0.00 44.50 4.35
2415 3006 5.104527 TGCCATTAGCTTATCTTGGTAGTGT 60.105 40.000 0.00 0.00 44.23 3.55
2781 3372 2.332063 AGTGTGACAACCTGTCCAAG 57.668 50.000 4.42 0.00 46.40 3.61
2796 3387 1.748493 TCTTCTTGCCGCAAAAAGTGT 59.252 42.857 16.81 0.00 0.00 3.55
2802 3393 0.030638 GCAACTCTTCTTGCCGCAAA 59.969 50.000 7.33 0.00 40.68 3.68
3072 3667 2.668457 GACGGTCACTCAAGTTAGCATG 59.332 50.000 2.62 0.00 0.00 4.06
3085 3680 6.980051 AGGAAAATGTAATTAGACGGTCAC 57.020 37.500 11.27 0.00 33.67 3.67
3090 3685 7.308782 AGCAGAAGGAAAATGTAATTAGACG 57.691 36.000 0.00 0.00 33.67 4.18
3093 3688 7.872113 AGGAGCAGAAGGAAAATGTAATTAG 57.128 36.000 0.00 0.00 33.67 1.73
3157 3752 1.944177 ACTGTATCCAGGCAGTCTGT 58.056 50.000 0.24 0.00 41.58 3.41
3229 3824 6.040391 AGCAAGCCTCAAGTACTCTCTTATAG 59.960 42.308 0.00 0.00 0.00 1.31
3265 3860 2.777832 ACTGGAGCAACTGAAGATCC 57.222 50.000 0.00 0.00 0.00 3.36
3289 3884 2.101415 GTCACCGATGATGGTCTGATCA 59.899 50.000 0.00 0.00 41.38 2.92
3304 3899 1.742761 AATTGATGCCTCTGTCACCG 58.257 50.000 0.00 0.00 0.00 4.94
3319 3914 2.205022 TCTGGCCTCCACTCAAATTG 57.795 50.000 3.32 0.00 0.00 2.32
3373 3968 8.301720 TCATCAAGCAAATAAATATCAGCATCC 58.698 33.333 0.00 0.00 0.00 3.51
3454 4049 7.939588 AGAAAGAACTAGAATAAGGCAACAACT 59.060 33.333 0.00 0.00 41.41 3.16
3456 4051 8.567948 CAAGAAAGAACTAGAATAAGGCAACAA 58.432 33.333 0.00 0.00 41.41 2.83
3472 4067 4.336713 ACAGAAGCACCTTCAAGAAAGAAC 59.663 41.667 7.62 0.00 42.37 3.01
3474 4069 4.156455 ACAGAAGCACCTTCAAGAAAGA 57.844 40.909 7.62 0.00 42.37 2.52
3475 4070 4.907879 AACAGAAGCACCTTCAAGAAAG 57.092 40.909 7.62 0.00 42.37 2.62
3479 4074 2.614057 ACGAAACAGAAGCACCTTCAAG 59.386 45.455 7.62 2.71 42.37 3.02
3482 4077 3.558418 TGTTACGAAACAGAAGCACCTTC 59.442 43.478 0.00 0.00 40.69 3.46
3499 4094 4.207019 GCAACACAAAAGCTGACATGTTAC 59.793 41.667 0.00 0.00 0.00 2.50
3644 4239 9.976511 TCTATGTACATTAGCCACTAAATGTAC 57.023 33.333 22.36 22.36 38.87 2.90
3691 4286 6.653320 TCGAATTGAACAACTTAATAGGCTGT 59.347 34.615 0.00 0.00 0.00 4.40
3789 4384 9.877178 CCCATTATCCTATCAGAAGTATTGTAC 57.123 37.037 0.00 0.00 0.00 2.90
3802 4478 4.228210 TGATCAAGGGCCCATTATCCTATC 59.772 45.833 27.56 14.52 0.00 2.08
3840 4529 9.956720 CTTAAGAACCTATGCCATGATAAAAAG 57.043 33.333 0.00 0.00 0.00 2.27
3855 4544 7.016268 GGTGATATGACCATCCTTAAGAACCTA 59.984 40.741 6.46 0.00 35.88 3.08
3947 4636 4.576053 TCCATGGTTTCGATAGCTTCATTG 59.424 41.667 12.58 0.00 0.00 2.82
3962 4651 1.094785 CTTCGCCGAAATCCATGGTT 58.905 50.000 12.58 0.00 0.00 3.67
3974 4663 1.067669 TCTCCATCAGAATCTTCGCCG 59.932 52.381 0.00 0.00 0.00 6.46
3998 4687 4.431416 TTTGTTAGGAACAGAAGGAGCA 57.569 40.909 0.00 0.00 43.27 4.26
4229 4918 4.019771 TGTGCCAAGACAATGAGTGGTATA 60.020 41.667 0.00 0.00 33.43 1.47
4250 4939 3.382083 AGAACTTGGAACAGGGTTTGT 57.618 42.857 0.00 0.00 33.27 2.83
4562 5251 4.104776 CACGCAAGAGTGAAAAACACAAT 58.895 39.130 0.00 0.00 46.54 2.71
4576 5265 2.248280 TAGAAAAGGCACACGCAAGA 57.752 45.000 0.00 0.00 41.24 3.02
4577 5266 3.559238 AATAGAAAAGGCACACGCAAG 57.441 42.857 0.00 0.00 41.24 4.01
4578 5267 4.047822 CAAAATAGAAAAGGCACACGCAA 58.952 39.130 0.00 0.00 41.24 4.85
4579 5268 3.637432 CAAAATAGAAAAGGCACACGCA 58.363 40.909 0.00 0.00 41.24 5.24
4580 5269 2.408368 GCAAAATAGAAAAGGCACACGC 59.592 45.455 0.00 0.00 37.44 5.34
4581 5270 3.637432 TGCAAAATAGAAAAGGCACACG 58.363 40.909 0.00 0.00 0.00 4.49
4696 5385 5.067674 TCCAAGGAGTTGAATTGTTGTTGAG 59.932 40.000 0.00 0.00 35.46 3.02
4826 5515 6.488683 TCCCAGGTTAATGTCAACACTAAAAG 59.511 38.462 0.00 0.00 0.00 2.27
4835 5525 9.762381 AAATTAAGTATCCCAGGTTAATGTCAA 57.238 29.630 0.00 0.00 0.00 3.18
4862 5574 5.647658 ACTTGCATTACGATCTCCATTGAAA 59.352 36.000 0.00 0.00 0.00 2.69
4885 5597 6.728089 ACCTACCCTTGCTATCTACTTTAC 57.272 41.667 0.00 0.00 0.00 2.01
4942 5661 2.497273 ACAGAGGTGGCCAAATTTATGC 59.503 45.455 7.24 0.00 0.00 3.14
4955 5677 5.401531 TGGCTAGTTAACTAACAGAGGTG 57.598 43.478 15.95 3.76 38.62 4.00
4964 5686 9.796180 TTTTCTGGTTAATTGGCTAGTTAACTA 57.204 29.630 21.70 17.07 39.53 2.24
4988 5713 5.358725 TCATGCTGAACATATGCATCTGTTT 59.641 36.000 25.71 13.41 44.39 2.83
5107 5842 8.892723 GGACATTCATTAACTATTGTGTGATGA 58.107 33.333 0.00 0.00 0.00 2.92
5121 5856 6.422333 TCATGGTAGCAAGGACATTCATTAA 58.578 36.000 0.00 0.00 0.00 1.40
5127 5862 4.307032 AGTTCATGGTAGCAAGGACATT 57.693 40.909 10.93 0.00 0.00 2.71
5417 6152 0.895530 TACCAGGAGGAAAGCTCACG 59.104 55.000 0.00 0.00 38.69 4.35
5465 6200 0.687354 AACAGAACGGCCTGTGAGAT 59.313 50.000 11.79 0.00 45.82 2.75
5473 6208 5.554822 TCATAAAATGTAACAGAACGGCC 57.445 39.130 0.00 0.00 0.00 6.13
5485 6220 7.716799 TGGGTAAAGCAAGATCATAAAATGT 57.283 32.000 0.00 0.00 0.00 2.71
5571 6308 5.619625 AGCTTGTTTAGATTGAGAAGCAC 57.380 39.130 0.00 0.00 42.62 4.40
5642 6379 3.310774 CACCTTGACATCCGAGCATTTAG 59.689 47.826 0.00 0.00 0.00 1.85
5725 6462 3.373439 GTGCTTCACTAGGAATCTTGCAG 59.627 47.826 0.00 0.00 34.74 4.41
5921 6663 9.968870 TGCCGTAAATAAAACTGAAGTATTTTT 57.031 25.926 0.00 0.00 31.58 1.94
5924 6666 9.174166 AGATGCCGTAAATAAAACTGAAGTATT 57.826 29.630 0.00 0.00 0.00 1.89
6061 6803 6.726764 AGAGTAGATTTACCACTTCCAGTTCT 59.273 38.462 0.00 0.00 0.00 3.01
6117 6859 6.458751 CGTCAATGATAATTTTCCCTCCTGTG 60.459 42.308 0.00 0.00 0.00 3.66
6118 6860 5.590259 CGTCAATGATAATTTTCCCTCCTGT 59.410 40.000 0.00 0.00 0.00 4.00
6142 6884 3.544834 CCAATCGCAGAAACATCGATGTC 60.545 47.826 30.06 18.88 43.58 3.06
6171 6913 2.126071 AACCGTGACCGCAGATCG 60.126 61.111 0.00 0.00 38.08 3.69
6198 6940 1.584724 ACAATGTAGGGTCCTGAGGG 58.415 55.000 0.00 0.00 0.00 4.30
6479 7222 2.094762 ACGAGGTGTCATGCTTTACC 57.905 50.000 0.00 0.00 0.00 2.85
6642 7390 0.792640 CTGTGTCAACTGATGCCGTC 59.207 55.000 0.00 0.00 0.00 4.79
6747 7495 3.489908 CCATGACTAGGTCACTGTCGATG 60.490 52.174 2.34 0.00 45.65 3.84
6821 7569 3.005897 CATGTAATGGTCTAGCTACGGCT 59.994 47.826 0.00 0.00 45.89 5.52
6823 7571 4.945246 AACATGTAATGGTCTAGCTACGG 58.055 43.478 0.00 0.00 44.29 4.02
6825 7573 7.611213 ACAAAACATGTAATGGTCTAGCTAC 57.389 36.000 13.52 0.00 44.29 3.58
6827 7575 7.448469 AGAAACAAAACATGTAATGGTCTAGCT 59.552 33.333 13.52 0.00 44.29 3.32
6828 7576 7.593825 AGAAACAAAACATGTAATGGTCTAGC 58.406 34.615 13.52 1.34 44.29 3.42
6831 7579 9.131791 AGTAAGAAACAAAACATGTAATGGTCT 57.868 29.630 13.52 12.01 44.29 3.85
6832 7580 9.180678 CAGTAAGAAACAAAACATGTAATGGTC 57.819 33.333 13.52 10.44 44.29 4.02
6892 7647 3.119990 CGTGACAAAGAACACTGTTTGGT 60.120 43.478 0.00 0.00 39.53 3.67
6911 7666 1.852067 CTCCCAAGTTTTCGGGCGTG 61.852 60.000 0.00 0.00 42.75 5.34
6912 7667 1.599797 CTCCCAAGTTTTCGGGCGT 60.600 57.895 0.00 0.00 42.75 5.68
6913 7668 2.978018 GCTCCCAAGTTTTCGGGCG 61.978 63.158 0.00 0.00 42.75 6.13
6914 7669 1.460273 TTGCTCCCAAGTTTTCGGGC 61.460 55.000 0.00 0.00 42.75 6.13
6916 7671 1.028905 TGTTGCTCCCAAGTTTTCGG 58.971 50.000 0.00 0.00 0.00 4.30
6919 7674 3.860641 CTGTTTGTTGCTCCCAAGTTTT 58.139 40.909 0.00 0.00 0.00 2.43
6920 7675 2.418609 GCTGTTTGTTGCTCCCAAGTTT 60.419 45.455 0.00 0.00 0.00 2.66
6921 7676 1.136891 GCTGTTTGTTGCTCCCAAGTT 59.863 47.619 0.00 0.00 0.00 2.66
6922 7677 0.746659 GCTGTTTGTTGCTCCCAAGT 59.253 50.000 0.00 0.00 0.00 3.16
6923 7678 0.318107 CGCTGTTTGTTGCTCCCAAG 60.318 55.000 0.00 0.00 0.00 3.61
6924 7679 1.732917 CGCTGTTTGTTGCTCCCAA 59.267 52.632 0.00 0.00 0.00 4.12
6925 7680 2.192861 CCGCTGTTTGTTGCTCCCA 61.193 57.895 0.00 0.00 0.00 4.37
6926 7681 1.734388 AACCGCTGTTTGTTGCTCCC 61.734 55.000 0.00 0.00 0.00 4.30
6927 7682 0.948678 TAACCGCTGTTTGTTGCTCC 59.051 50.000 0.00 0.00 35.87 4.70
6928 7683 1.659211 CGTAACCGCTGTTTGTTGCTC 60.659 52.381 0.00 0.00 35.87 4.26
6929 7684 0.306533 CGTAACCGCTGTTTGTTGCT 59.693 50.000 0.00 0.00 35.87 3.91
6930 7685 0.659123 CCGTAACCGCTGTTTGTTGC 60.659 55.000 0.00 0.00 35.87 4.17
6931 7686 0.658897 ACCGTAACCGCTGTTTGTTG 59.341 50.000 0.00 0.00 35.87 3.33
6932 7687 0.658897 CACCGTAACCGCTGTTTGTT 59.341 50.000 0.00 0.00 35.87 2.83
6933 7688 0.179078 TCACCGTAACCGCTGTTTGT 60.179 50.000 0.00 0.00 35.87 2.83
6934 7689 0.938713 TTCACCGTAACCGCTGTTTG 59.061 50.000 0.00 0.00 35.87 2.93
6935 7690 1.886886 ATTCACCGTAACCGCTGTTT 58.113 45.000 0.00 0.00 35.87 2.83
6964 7719 9.072294 CGCTATTTTACCTGGAAAATAAACAAG 57.928 33.333 17.12 11.84 39.55 3.16
6965 7720 8.030106 CCGCTATTTTACCTGGAAAATAAACAA 58.970 33.333 17.12 5.39 39.55 2.83
6967 7722 7.764331 TCCGCTATTTTACCTGGAAAATAAAC 58.236 34.615 17.12 13.47 39.55 2.01
6968 7723 7.612633 ACTCCGCTATTTTACCTGGAAAATAAA 59.387 33.333 17.12 5.00 39.55 1.40
6971 7726 5.506708 ACTCCGCTATTTTACCTGGAAAAT 58.493 37.500 0.00 10.72 41.00 1.82
6972 7727 4.913784 ACTCCGCTATTTTACCTGGAAAA 58.086 39.130 0.00 3.67 33.04 2.29
6973 7728 4.563140 ACTCCGCTATTTTACCTGGAAA 57.437 40.909 0.00 0.00 0.00 3.13
6976 7731 2.864343 CGAACTCCGCTATTTTACCTGG 59.136 50.000 0.00 0.00 0.00 4.45
6987 7742 2.338984 GGTGTGTCGAACTCCGCT 59.661 61.111 0.00 0.00 38.37 5.52
7096 7851 2.781174 TCGGTGGGGGATTTAAGCTAAT 59.219 45.455 0.00 0.00 0.00 1.73
7097 7852 2.171870 CTCGGTGGGGGATTTAAGCTAA 59.828 50.000 0.00 0.00 0.00 3.09
7098 7853 1.766496 CTCGGTGGGGGATTTAAGCTA 59.234 52.381 0.00 0.00 0.00 3.32
7146 7901 2.159170 GGTGTGAGTAGACTGGCAGATC 60.159 54.545 23.66 14.63 0.00 2.75
7206 7974 3.493503 CGCTTCTTTCCGTTCATATACCC 59.506 47.826 0.00 0.00 0.00 3.69
7253 8022 2.216898 CTCGAAGAAGAATCCATGGCC 58.783 52.381 6.96 0.00 34.09 5.36
7388 8157 4.728917 TTACCCACGTTATTTGTGTTCG 57.271 40.909 0.00 0.00 35.56 3.95
7394 8163 5.068067 CCCCCTTTATTACCCACGTTATTTG 59.932 44.000 0.00 0.00 0.00 2.32
7449 8218 7.148573 ACAGTTTTGATAGATAACAAGCACTCG 60.149 37.037 0.00 0.00 0.00 4.18
7502 8323 3.969287 TCCGATCCAGGATCATGATTC 57.031 47.619 26.37 7.94 38.84 2.52
7543 8364 0.108281 GTTCCTACCAACGGAGCTCC 60.108 60.000 23.79 23.79 0.00 4.70
7552 8373 0.179051 ACGGTTTGCGTTCCTACCAA 60.179 50.000 0.00 0.00 0.00 3.67
7569 8390 5.623169 AGAGGGAGTAGTTAAGATCCTACG 58.377 45.833 0.00 0.00 38.82 3.51
7675 8496 8.337739 ACCAAGAGTCTTTTATAGGAGTAGAGA 58.662 37.037 12.00 0.00 0.00 3.10
7683 8504 7.443575 CCATCATCACCAAGAGTCTTTTATAGG 59.556 40.741 1.56 3.61 0.00 2.57
7696 8517 3.063510 AGACACACCATCATCACCAAG 57.936 47.619 0.00 0.00 0.00 3.61
7698 8519 3.774216 TGATAGACACACCATCATCACCA 59.226 43.478 0.00 0.00 0.00 4.17
7699 8520 4.406648 TGATAGACACACCATCATCACC 57.593 45.455 0.00 0.00 0.00 4.02
7701 8522 5.163416 ACGAATGATAGACACACCATCATCA 60.163 40.000 0.00 0.00 38.21 3.07
7702 8523 5.292765 ACGAATGATAGACACACCATCATC 58.707 41.667 0.00 0.00 38.21 2.92
7703 8524 5.163416 TGACGAATGATAGACACACCATCAT 60.163 40.000 0.00 0.00 40.31 2.45
7704 8525 4.159506 TGACGAATGATAGACACACCATCA 59.840 41.667 0.00 0.00 33.47 3.07
7705 8526 4.682787 TGACGAATGATAGACACACCATC 58.317 43.478 0.00 0.00 0.00 3.51
7706 8527 4.736126 TGACGAATGATAGACACACCAT 57.264 40.909 0.00 0.00 0.00 3.55
7707 8528 4.736126 ATGACGAATGATAGACACACCA 57.264 40.909 0.00 0.00 0.00 4.17
7708 8529 5.812642 AGAAATGACGAATGATAGACACACC 59.187 40.000 0.00 0.00 0.00 4.16
7709 8530 6.531594 TCAGAAATGACGAATGATAGACACAC 59.468 38.462 0.00 0.00 0.00 3.82
7710 8531 6.630071 TCAGAAATGACGAATGATAGACACA 58.370 36.000 0.00 0.00 0.00 3.72
7711 8532 7.436376 TGATCAGAAATGACGAATGATAGACAC 59.564 37.037 0.00 0.00 30.98 3.67
7712 8533 7.491682 TGATCAGAAATGACGAATGATAGACA 58.508 34.615 0.00 0.00 30.98 3.41
7713 8534 7.936950 TGATCAGAAATGACGAATGATAGAC 57.063 36.000 0.00 0.00 30.98 2.59
7714 8535 8.362639 TGATGATCAGAAATGACGAATGATAGA 58.637 33.333 0.09 0.00 30.98 1.98
7715 8536 8.530269 TGATGATCAGAAATGACGAATGATAG 57.470 34.615 0.09 0.00 30.98 2.08
7736 8557 6.224584 ACAGTCATTAGATGCAGATCTGATG 58.775 40.000 27.04 18.19 46.77 3.07
7737 8558 6.422344 ACAGTCATTAGATGCAGATCTGAT 57.578 37.500 27.04 15.87 39.44 2.90
7754 8575 4.748102 GTCGTTGGTTTCAAGATACAGTCA 59.252 41.667 0.00 0.00 32.92 3.41
7775 8660 1.691434 GATGAGGTGAGGAGGGATGTC 59.309 57.143 0.00 0.00 0.00 3.06
7778 8663 2.575921 TTGATGAGGTGAGGAGGGAT 57.424 50.000 0.00 0.00 0.00 3.85
7786 8671 4.951254 TCGTTACTGTTTTGATGAGGTGA 58.049 39.130 0.00 0.00 0.00 4.02
7845 8732 9.841295 ACTCTAGTTTTGGTATGTCACTAAAAA 57.159 29.630 1.02 0.00 45.63 1.94
7846 8733 9.268268 CACTCTAGTTTTGGTATGTCACTAAAA 57.732 33.333 0.00 0.00 43.06 1.52
7847 8734 8.426489 ACACTCTAGTTTTGGTATGTCACTAAA 58.574 33.333 0.00 0.00 35.98 1.85
7848 8735 7.959175 ACACTCTAGTTTTGGTATGTCACTAA 58.041 34.615 0.00 0.00 0.00 2.24
7849 8736 7.534723 ACACTCTAGTTTTGGTATGTCACTA 57.465 36.000 0.00 0.00 0.00 2.74
7850 8737 6.420913 ACACTCTAGTTTTGGTATGTCACT 57.579 37.500 0.00 0.00 0.00 3.41
7851 8738 7.441458 AGAAACACTCTAGTTTTGGTATGTCAC 59.559 37.037 0.00 0.00 41.48 3.67
7852 8739 7.506114 AGAAACACTCTAGTTTTGGTATGTCA 58.494 34.615 0.00 0.00 41.48 3.58
7853 8740 7.964604 AGAAACACTCTAGTTTTGGTATGTC 57.035 36.000 0.00 0.00 41.48 3.06
7854 8741 7.964604 GAGAAACACTCTAGTTTTGGTATGT 57.035 36.000 0.00 0.00 41.48 2.29
7868 8755 6.842163 TCACAAACTTGAAAGAGAAACACTC 58.158 36.000 0.00 0.00 45.22 3.51
7908 8795 4.036262 TGTGTTGCAACAGATCCAAAGTAC 59.964 41.667 31.81 15.71 40.05 2.73
7909 8796 4.036262 GTGTGTTGCAACAGATCCAAAGTA 59.964 41.667 31.81 2.96 40.05 2.24
7910 8797 3.023119 TGTGTTGCAACAGATCCAAAGT 58.977 40.909 31.81 0.00 40.05 2.66
7920 8807 0.675208 ACTGTCCGTGTGTTGCAACA 60.675 50.000 27.96 27.96 36.38 3.33
7929 8816 1.461091 ATGTGTCCGACTGTCCGTGT 61.461 55.000 1.55 0.00 0.00 4.49
7935 8822 1.618837 ACTAGCAATGTGTCCGACTGT 59.381 47.619 0.00 0.00 0.00 3.55
7936 8823 2.370281 ACTAGCAATGTGTCCGACTG 57.630 50.000 0.00 0.00 0.00 3.51
7937 8824 3.402628 AAACTAGCAATGTGTCCGACT 57.597 42.857 0.00 0.00 0.00 4.18
7938 8825 4.491676 TCTAAACTAGCAATGTGTCCGAC 58.508 43.478 0.00 0.00 0.00 4.79
7939 8826 4.794278 TCTAAACTAGCAATGTGTCCGA 57.206 40.909 0.00 0.00 0.00 4.55
7940 8827 5.856126 TTTCTAAACTAGCAATGTGTCCG 57.144 39.130 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.