Multiple sequence alignment - TraesCS4B01G343700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G343700 | chr4B | 100.000 | 4450 | 0 | 0 | 1 | 4450 | 637385058 | 637389507 | 0.000000e+00 | 8218.0 |
1 | TraesCS4B01G343700 | chr4D | 95.388 | 3122 | 100 | 21 | 689 | 3794 | 497028663 | 497031756 | 0.000000e+00 | 4927.0 |
2 | TraesCS4B01G343700 | chr4D | 87.464 | 702 | 65 | 15 | 6 | 685 | 497027495 | 497028195 | 0.000000e+00 | 787.0 |
3 | TraesCS4B01G343700 | chr4D | 90.980 | 255 | 9 | 6 | 3813 | 4066 | 497031943 | 497032184 | 9.230000e-87 | 331.0 |
4 | TraesCS4B01G343700 | chr4D | 88.835 | 206 | 8 | 10 | 3535 | 3736 | 497031774 | 497031968 | 5.750000e-59 | 239.0 |
5 | TraesCS4B01G343700 | chr4D | 86.885 | 183 | 16 | 6 | 3985 | 4163 | 380190702 | 380190880 | 9.760000e-47 | 198.0 |
6 | TraesCS4B01G343700 | chr4D | 86.885 | 183 | 16 | 6 | 3985 | 4163 | 427874902 | 427875080 | 9.760000e-47 | 198.0 |
7 | TraesCS4B01G343700 | chr4D | 83.784 | 74 | 8 | 3 | 4272 | 4343 | 170225969 | 170225898 | 2.870000e-07 | 67.6 |
8 | TraesCS4B01G343700 | chr5A | 94.343 | 3005 | 141 | 15 | 734 | 3734 | 676590703 | 676593682 | 0.000000e+00 | 4580.0 |
9 | TraesCS4B01G343700 | chr5A | 84.146 | 164 | 11 | 10 | 3806 | 3964 | 676595357 | 676595510 | 1.290000e-30 | 145.0 |
10 | TraesCS4B01G343700 | chr5A | 93.103 | 87 | 4 | 1 | 4164 | 4248 | 171740576 | 171740662 | 4.670000e-25 | 126.0 |
11 | TraesCS4B01G343700 | chr5A | 80.503 | 159 | 14 | 8 | 4286 | 4443 | 676595539 | 676595681 | 6.090000e-19 | 106.0 |
12 | TraesCS4B01G343700 | chr5A | 89.474 | 57 | 4 | 2 | 5 | 59 | 140699935 | 140699879 | 2.220000e-08 | 71.3 |
13 | TraesCS4B01G343700 | chr5A | 82.278 | 79 | 8 | 5 | 4263 | 4339 | 457089275 | 457089349 | 3.720000e-06 | 63.9 |
14 | TraesCS4B01G343700 | chr6B | 77.455 | 448 | 74 | 16 | 42 | 462 | 626291715 | 626292162 | 4.450000e-60 | 243.0 |
15 | TraesCS4B01G343700 | chr6B | 87.778 | 180 | 14 | 6 | 3988 | 4163 | 526639501 | 526639326 | 2.100000e-48 | 204.0 |
16 | TraesCS4B01G343700 | chr6B | 74.442 | 493 | 78 | 22 | 47 | 496 | 159127292 | 159127779 | 7.660000e-38 | 169.0 |
17 | TraesCS4B01G343700 | chr5B | 75.233 | 537 | 86 | 30 | 108 | 603 | 234214635 | 234215165 | 1.250000e-50 | 211.0 |
18 | TraesCS4B01G343700 | chr2D | 88.333 | 180 | 13 | 6 | 3988 | 4163 | 583242163 | 583241988 | 4.510000e-50 | 209.0 |
19 | TraesCS4B01G343700 | chr2D | 73.737 | 297 | 58 | 12 | 361 | 640 | 648259957 | 648259664 | 1.020000e-16 | 99.0 |
20 | TraesCS4B01G343700 | chr2D | 84.722 | 72 | 7 | 3 | 4272 | 4341 | 410600740 | 410600671 | 7.990000e-08 | 69.4 |
21 | TraesCS4B01G343700 | chr2D | 84.000 | 75 | 7 | 5 | 4267 | 4339 | 556200589 | 556200660 | 2.870000e-07 | 67.6 |
22 | TraesCS4B01G343700 | chr2D | 85.714 | 63 | 7 | 2 | 5 | 67 | 588696396 | 588696336 | 1.030000e-06 | 65.8 |
23 | TraesCS4B01G343700 | chr7A | 88.268 | 179 | 14 | 5 | 3988 | 4163 | 391241042 | 391240868 | 1.620000e-49 | 207.0 |
24 | TraesCS4B01G343700 | chr7A | 86.250 | 80 | 9 | 1 | 4164 | 4241 | 318058131 | 318058210 | 7.930000e-13 | 86.1 |
25 | TraesCS4B01G343700 | chr7A | 82.716 | 81 | 9 | 4 | 4261 | 4339 | 637915607 | 637915530 | 2.870000e-07 | 67.6 |
26 | TraesCS4B01G343700 | chr7D | 87.778 | 180 | 14 | 6 | 3988 | 4163 | 81101771 | 81101596 | 2.100000e-48 | 204.0 |
27 | TraesCS4B01G343700 | chr7D | 75.204 | 367 | 65 | 15 | 41 | 385 | 65394520 | 65394158 | 2.770000e-32 | 150.0 |
28 | TraesCS4B01G343700 | chr7D | 80.645 | 93 | 17 | 1 | 228 | 320 | 607562538 | 607562629 | 2.220000e-08 | 71.3 |
29 | TraesCS4B01G343700 | chr6D | 87.432 | 183 | 15 | 6 | 3985 | 4163 | 153360366 | 153360544 | 2.100000e-48 | 204.0 |
30 | TraesCS4B01G343700 | chr6D | 87.709 | 179 | 14 | 6 | 3989 | 4163 | 181640691 | 181640865 | 7.550000e-48 | 202.0 |
31 | TraesCS4B01G343700 | chr6D | 86.957 | 69 | 6 | 2 | 4272 | 4338 | 237375482 | 237375549 | 1.720000e-09 | 75.0 |
32 | TraesCS4B01G343700 | chr5D | 87.432 | 183 | 15 | 6 | 3985 | 4163 | 111707844 | 111708022 | 2.100000e-48 | 204.0 |
33 | TraesCS4B01G343700 | chr5D | 75.166 | 302 | 53 | 16 | 47 | 328 | 227791761 | 227792060 | 6.040000e-24 | 122.0 |
34 | TraesCS4B01G343700 | chrUn | 74.751 | 301 | 54 | 15 | 48 | 328 | 150955033 | 150955331 | 1.010000e-21 | 115.0 |
35 | TraesCS4B01G343700 | chrUn | 74.751 | 301 | 54 | 15 | 48 | 328 | 342410359 | 342410657 | 1.010000e-21 | 115.0 |
36 | TraesCS4B01G343700 | chrUn | 74.632 | 272 | 50 | 12 | 48 | 302 | 306634375 | 306634106 | 7.870000e-18 | 102.0 |
37 | TraesCS4B01G343700 | chr1D | 75.000 | 308 | 47 | 21 | 184 | 462 | 217103917 | 217104223 | 1.010000e-21 | 115.0 |
38 | TraesCS4B01G343700 | chr3B | 74.658 | 292 | 53 | 13 | 48 | 325 | 1785080 | 1784796 | 4.710000e-20 | 110.0 |
39 | TraesCS4B01G343700 | chr1A | 74.419 | 301 | 55 | 15 | 48 | 328 | 1632648 | 1632350 | 4.710000e-20 | 110.0 |
40 | TraesCS4B01G343700 | chr2B | 76.995 | 213 | 29 | 14 | 133 | 325 | 116258354 | 116258566 | 2.190000e-18 | 104.0 |
41 | TraesCS4B01G343700 | chr2B | 84.615 | 78 | 8 | 4 | 4267 | 4342 | 663366871 | 663366796 | 1.720000e-09 | 75.0 |
42 | TraesCS4B01G343700 | chr2A | 91.379 | 58 | 2 | 3 | 5 | 61 | 178234269 | 178234324 | 4.770000e-10 | 76.8 |
43 | TraesCS4B01G343700 | chr2A | 94.118 | 51 | 1 | 2 | 5 | 55 | 440275214 | 440275262 | 4.770000e-10 | 76.8 |
44 | TraesCS4B01G343700 | chr1B | 97.727 | 44 | 1 | 0 | 1 | 44 | 352109181 | 352109224 | 4.770000e-10 | 76.8 |
45 | TraesCS4B01G343700 | chr1B | 91.071 | 56 | 2 | 2 | 5 | 57 | 395656924 | 395656979 | 6.170000e-09 | 73.1 |
46 | TraesCS4B01G343700 | chr1B | 92.308 | 52 | 2 | 2 | 5 | 55 | 567168163 | 567168213 | 6.170000e-09 | 73.1 |
47 | TraesCS4B01G343700 | chr1B | 85.714 | 70 | 6 | 2 | 4273 | 4340 | 211626976 | 211626909 | 2.220000e-08 | 71.3 |
48 | TraesCS4B01G343700 | chr7B | 85.714 | 70 | 6 | 3 | 4272 | 4339 | 477814902 | 477814969 | 2.220000e-08 | 71.3 |
49 | TraesCS4B01G343700 | chr3A | 92.157 | 51 | 2 | 2 | 5 | 55 | 731385173 | 731385221 | 2.220000e-08 | 71.3 |
50 | TraesCS4B01G343700 | chr6A | 86.885 | 61 | 6 | 2 | 5 | 64 | 439067898 | 439067957 | 2.870000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G343700 | chr4B | 637385058 | 637389507 | 4449 | False | 8218.000000 | 8218 | 100.000000 | 1 | 4450 | 1 | chr4B.!!$F1 | 4449 |
1 | TraesCS4B01G343700 | chr4D | 497027495 | 497032184 | 4689 | False | 1571.000000 | 4927 | 90.666750 | 6 | 4066 | 4 | chr4D.!!$F3 | 4060 |
2 | TraesCS4B01G343700 | chr5A | 676590703 | 676595681 | 4978 | False | 1610.333333 | 4580 | 86.330667 | 734 | 4443 | 3 | chr5A.!!$F3 | 3709 |
3 | TraesCS4B01G343700 | chr5B | 234214635 | 234215165 | 530 | False | 211.000000 | 211 | 75.233000 | 108 | 603 | 1 | chr5B.!!$F1 | 495 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
49 | 50 | 0.027586 | GACGTATCAATGGTTGCGGC | 59.972 | 55.0 | 0.00 | 0.0 | 0.0 | 6.53 | F |
478 | 512 | 0.524604 | CGACACATACGGCGATGACA | 60.525 | 55.0 | 16.62 | 0.0 | 0.0 | 3.58 | F |
2081 | 2609 | 0.251033 | ACCGGCTTTTACAGGGTTCC | 60.251 | 55.0 | 0.00 | 0.0 | 0.0 | 3.62 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1887 | 2415 | 2.344025 | CCGTCCTGTAAAGTAGTTGCC | 58.656 | 52.381 | 0.00 | 0.0 | 0.0 | 4.52 | R |
2327 | 2855 | 4.827284 | ACTGACCTAAAGTTTTCACATGGG | 59.173 | 41.667 | 0.00 | 0.0 | 0.0 | 4.00 | R |
3981 | 6309 | 0.027586 | GTTGCAACACACGGACAGTC | 59.972 | 55.000 | 24.52 | 0.0 | 0.0 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
49 | 50 | 0.027586 | GACGTATCAATGGTTGCGGC | 59.972 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
129 | 130 | 1.444895 | GGTACGACCGACGCAATGT | 60.445 | 57.895 | 0.00 | 0.00 | 46.94 | 2.71 |
168 | 173 | 1.227089 | CTAAGAGCATCGTGGCGCT | 60.227 | 57.895 | 7.64 | 2.06 | 46.17 | 5.92 |
170 | 175 | 2.225791 | TAAGAGCATCGTGGCGCTGT | 62.226 | 55.000 | 7.64 | 0.00 | 43.33 | 4.40 |
232 | 246 | 3.773370 | GTCACCACCCAGAGACGA | 58.227 | 61.111 | 0.00 | 0.00 | 0.00 | 4.20 |
250 | 275 | 4.776322 | TGGTCGCCGCCTTGATGG | 62.776 | 66.667 | 0.00 | 0.00 | 39.35 | 3.51 |
275 | 300 | 1.138883 | CGCCAAGATCGACGAGGAA | 59.861 | 57.895 | 3.01 | 0.00 | 0.00 | 3.36 |
304 | 329 | 2.651361 | CGACTCCTCTGCCAACGT | 59.349 | 61.111 | 0.00 | 0.00 | 0.00 | 3.99 |
457 | 482 | 4.803426 | GCTGCTGGAGGGACGACG | 62.803 | 72.222 | 0.00 | 0.00 | 0.00 | 5.12 |
460 | 485 | 4.477975 | GCTGGAGGGACGACGACG | 62.478 | 72.222 | 5.58 | 5.58 | 45.75 | 5.12 |
465 | 499 | 2.592574 | AGGGACGACGACGACACA | 60.593 | 61.111 | 15.32 | 0.00 | 39.70 | 3.72 |
466 | 500 | 1.919956 | GAGGGACGACGACGACACAT | 61.920 | 60.000 | 15.32 | 0.88 | 39.70 | 3.21 |
474 | 508 | 4.704007 | GACGACACATACGGCGAT | 57.296 | 55.556 | 16.62 | 0.00 | 34.93 | 4.58 |
478 | 512 | 0.524604 | CGACACATACGGCGATGACA | 60.525 | 55.000 | 16.62 | 0.00 | 0.00 | 3.58 |
517 | 551 | 1.361668 | CTGCGCATGTGAGGTGGTAC | 61.362 | 60.000 | 12.24 | 0.00 | 0.00 | 3.34 |
528 | 573 | 4.343526 | TGTGAGGTGGTACGTTTTAGGTAA | 59.656 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
609 | 654 | 3.535561 | AGCTTGAATGAAATCGGTCGAT | 58.464 | 40.909 | 0.00 | 0.00 | 36.23 | 3.59 |
628 | 673 | 5.683743 | GTCGATTTTGTTTGAATTTCGTCCA | 59.316 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
648 | 693 | 7.034397 | CGTCCAGTTTGTTTAAACCCTTTTTA | 58.966 | 34.615 | 15.59 | 0.00 | 45.77 | 1.52 |
662 | 707 | 4.528987 | ACCCTTTTTAAAATGTATGCGGGT | 59.471 | 37.500 | 8.04 | 8.04 | 36.42 | 5.28 |
674 | 719 | 2.420043 | GCGGGTAGCGCTGGATTA | 59.580 | 61.111 | 22.90 | 0.00 | 35.41 | 1.75 |
681 | 726 | 4.431035 | GCGCTGGATTACCGCTTA | 57.569 | 55.556 | 0.00 | 0.00 | 43.95 | 3.09 |
699 | 1208 | 2.524951 | TACCGGGTGTCCAAATCGCC | 62.525 | 60.000 | 10.66 | 0.00 | 35.03 | 5.54 |
718 | 1227 | 4.999939 | CGGCGCAAAACCAGGTGC | 63.000 | 66.667 | 10.83 | 0.00 | 39.70 | 5.01 |
777 | 1297 | 2.540931 | GCGACGACCTTTGTGTTTTCTA | 59.459 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
978 | 1498 | 1.618030 | GAGAGGAGCTGAGAGGGGA | 59.382 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
992 | 1512 | 1.000771 | GGGGAAAAGGCAGGAGTCC | 60.001 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
1216 | 1736 | 2.543861 | GCCTGATGCAGCTTCATGATTG | 60.544 | 50.000 | 15.19 | 0.00 | 40.77 | 2.67 |
1217 | 1737 | 2.949644 | CCTGATGCAGCTTCATGATTGA | 59.050 | 45.455 | 2.74 | 0.00 | 0.00 | 2.57 |
1229 | 1749 | 6.754209 | AGCTTCATGATTGAAAGTAGTACTCG | 59.246 | 38.462 | 2.58 | 0.00 | 41.22 | 4.18 |
1239 | 1759 | 6.552629 | TGAAAGTAGTACTCGCTTGTATGAG | 58.447 | 40.000 | 2.58 | 0.00 | 38.21 | 2.90 |
1335 | 1855 | 5.607939 | TTTCTTTCCAAAAGGGGAGTTTC | 57.392 | 39.130 | 0.00 | 0.00 | 38.42 | 2.78 |
1343 | 1863 | 2.781681 | AAGGGGAGTTTCATACGGTG | 57.218 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1403 | 1928 | 6.030548 | TGTCCTACTATGCTATGCAGATTC | 57.969 | 41.667 | 0.00 | 0.00 | 43.65 | 2.52 |
1416 | 1941 | 1.141053 | GCAGATTCCACTTCCCGGTAT | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
1422 | 1947 | 7.364408 | GCAGATTCCACTTCCCGGTATATATTA | 60.364 | 40.741 | 0.00 | 0.00 | 0.00 | 0.98 |
1635 | 2162 | 3.057526 | GTGGGGCAAGAGTAATTTGTGAC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
1653 | 2180 | 9.857656 | ATTTGTGACCATATATCATGAGAACTT | 57.142 | 29.630 | 0.09 | 0.00 | 0.00 | 2.66 |
1674 | 2201 | 1.461559 | AGCTGGCTCATTCAAGAAGC | 58.538 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1684 | 2211 | 5.063944 | GCTCATTCAAGAAGCGAAATCTGTA | 59.936 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1719 | 2246 | 2.125793 | GCCACCCGGACTCGTTAC | 60.126 | 66.667 | 0.73 | 0.00 | 33.95 | 2.50 |
1760 | 2288 | 3.440173 | TCGGAGTTGCAATTTCCTTCATC | 59.560 | 43.478 | 22.85 | 0.83 | 0.00 | 2.92 |
1887 | 2415 | 5.607477 | TGGACCTTGTAGTAACTTTGTCTG | 58.393 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2081 | 2609 | 0.251033 | ACCGGCTTTTACAGGGTTCC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2180 | 2708 | 1.398390 | CTCGTTTGGACTAATGCTGGC | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
2327 | 2855 | 1.733399 | GCGACAAGACCTCACGGAC | 60.733 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
2606 | 3134 | 3.448686 | AGAGAAATACTTGCCGTCATCG | 58.551 | 45.455 | 0.00 | 0.00 | 0.00 | 3.84 |
2621 | 3149 | 3.120649 | CGTCATCGGTTTCTTGGTTCTTC | 60.121 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
2630 | 3158 | 4.351874 | TTCTTGGTTCTTCGAGAATGGT | 57.648 | 40.909 | 1.55 | 0.00 | 36.50 | 3.55 |
2681 | 3209 | 2.487986 | GGGAGATCCAATACTTGCTGGG | 60.488 | 54.545 | 0.47 | 0.00 | 37.91 | 4.45 |
2714 | 3242 | 1.617804 | CCTGCTGGTGGGACAAATGAT | 60.618 | 52.381 | 0.51 | 0.00 | 44.16 | 2.45 |
2768 | 3296 | 2.542597 | ACGCGTGAGTTTGTCAAAGTA | 58.457 | 42.857 | 12.93 | 0.00 | 36.74 | 2.24 |
2864 | 3392 | 0.893727 | GGGTGTTCTGCCCGTTCAAT | 60.894 | 55.000 | 0.00 | 0.00 | 36.30 | 2.57 |
2873 | 3401 | 3.814268 | CCGTTCAATGGGCCAGCG | 61.814 | 66.667 | 13.78 | 10.93 | 0.00 | 5.18 |
2975 | 3503 | 5.277825 | CGCATAAGTAACTTCTCTGGAGAG | 58.722 | 45.833 | 0.00 | 0.00 | 43.36 | 3.20 |
2981 | 3509 | 1.750193 | ACTTCTCTGGAGAGCTCTCG | 58.250 | 55.000 | 32.08 | 21.70 | 43.76 | 4.04 |
3068 | 3596 | 1.392510 | GGAAACAAGGCGATCGTGTAC | 59.607 | 52.381 | 17.81 | 10.50 | 37.09 | 2.90 |
3071 | 3599 | 0.885879 | ACAAGGCGATCGTGTACTCA | 59.114 | 50.000 | 17.81 | 0.00 | 36.35 | 3.41 |
3074 | 3602 | 1.389555 | AGGCGATCGTGTACTCATCA | 58.610 | 50.000 | 17.81 | 0.00 | 0.00 | 3.07 |
3086 | 3614 | 2.134789 | ACTCATCAAGGAATGGGCAC | 57.865 | 50.000 | 0.00 | 0.00 | 29.63 | 5.01 |
3095 | 3623 | 1.103398 | GGAATGGGCACGCAAGCTAT | 61.103 | 55.000 | 0.00 | 0.00 | 45.62 | 2.97 |
3143 | 3671 | 3.785499 | GAAAACCTCGGCGTCGGC | 61.785 | 66.667 | 10.62 | 9.07 | 36.95 | 5.54 |
3185 | 3713 | 1.135915 | AGCGAGCTGTCAATCGATTCT | 59.864 | 47.619 | 7.92 | 1.46 | 41.40 | 2.40 |
3209 | 3737 | 3.797184 | GCACGAGGTACAAGATCATCTCC | 60.797 | 52.174 | 0.00 | 0.00 | 0.00 | 3.71 |
3212 | 3740 | 1.338337 | AGGTACAAGATCATCTCCGCG | 59.662 | 52.381 | 0.00 | 0.00 | 0.00 | 6.46 |
3215 | 3743 | 0.387202 | ACAAGATCATCTCCGCGGAG | 59.613 | 55.000 | 42.89 | 42.89 | 43.21 | 4.63 |
3221 | 3749 | 1.101635 | TCATCTCCGCGGAGTACCTG | 61.102 | 60.000 | 44.61 | 34.95 | 42.49 | 4.00 |
3525 | 4053 | 2.482721 | GTGAGAATGTTGGTTGGTACGG | 59.517 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3526 | 4054 | 2.105134 | TGAGAATGTTGGTTGGTACGGT | 59.895 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
3531 | 4059 | 2.222886 | TGTTGGTTGGTACGGTTGATG | 58.777 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
3576 | 4104 | 3.939592 | GACTTGGTAGTGCTGGGTATTTC | 59.060 | 47.826 | 0.00 | 0.00 | 33.84 | 2.17 |
3647 | 4177 | 3.445805 | GCTCTGGCTGTCTAGTTTCTACT | 59.554 | 47.826 | 0.00 | 0.00 | 35.51 | 2.57 |
3648 | 4178 | 4.641094 | GCTCTGGCTGTCTAGTTTCTACTA | 59.359 | 45.833 | 0.00 | 0.00 | 34.13 | 1.82 |
3649 | 4179 | 5.449451 | GCTCTGGCTGTCTAGTTTCTACTAC | 60.449 | 48.000 | 0.00 | 0.00 | 34.13 | 2.73 |
3682 | 4212 | 6.732896 | TTTTGCATTTCCCCAACTAGTTTA | 57.267 | 33.333 | 5.07 | 0.00 | 0.00 | 2.01 |
3685 | 4215 | 4.953579 | TGCATTTCCCCAACTAGTTTATCC | 59.046 | 41.667 | 5.07 | 0.00 | 0.00 | 2.59 |
3719 | 4250 | 7.665974 | TGAGTATTACTGATATCGTCCACTGAT | 59.334 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
3725 | 4256 | 5.182950 | ACTGATATCGTCCACTGATGATCTC | 59.817 | 44.000 | 0.00 | 2.76 | 42.36 | 2.75 |
3753 | 5910 | 4.043184 | AGAACCATTTTGCATTTCCCCAAT | 59.957 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
3774 | 5931 | 6.352565 | CCAATTAGTTCTCCTGAGGAAGTGAT | 60.353 | 42.308 | 1.41 | 0.00 | 0.00 | 3.06 |
3776 | 5933 | 2.836981 | AGTTCTCCTGAGGAAGTGATGG | 59.163 | 50.000 | 1.41 | 0.00 | 0.00 | 3.51 |
3806 | 5963 | 5.806654 | TTTTCTTTTTGAGGGAAGGGATG | 57.193 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
3807 | 5964 | 4.740154 | TTCTTTTTGAGGGAAGGGATGA | 57.260 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
3809 | 5966 | 6.401537 | TTCTTTTTGAGGGAAGGGATGATA | 57.598 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
3981 | 6309 | 5.856126 | TTTCTAAACTAGCAATGTGTCCG | 57.144 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
3982 | 6310 | 4.794278 | TCTAAACTAGCAATGTGTCCGA | 57.206 | 40.909 | 0.00 | 0.00 | 0.00 | 4.55 |
3983 | 6311 | 4.491676 | TCTAAACTAGCAATGTGTCCGAC | 58.508 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3984 | 6312 | 3.402628 | AAACTAGCAATGTGTCCGACT | 57.597 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
3985 | 6313 | 2.370281 | ACTAGCAATGTGTCCGACTG | 57.630 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3986 | 6314 | 1.618837 | ACTAGCAATGTGTCCGACTGT | 59.381 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
3992 | 6320 | 1.461091 | ATGTGTCCGACTGTCCGTGT | 61.461 | 55.000 | 1.55 | 0.00 | 0.00 | 4.49 |
4001 | 6329 | 0.675208 | ACTGTCCGTGTGTTGCAACA | 60.675 | 50.000 | 27.96 | 27.96 | 36.38 | 3.33 |
4011 | 6339 | 3.023119 | TGTGTTGCAACAGATCCAAAGT | 58.977 | 40.909 | 31.81 | 0.00 | 40.05 | 2.66 |
4012 | 6340 | 4.036262 | GTGTGTTGCAACAGATCCAAAGTA | 59.964 | 41.667 | 31.81 | 2.96 | 40.05 | 2.24 |
4013 | 6341 | 4.036262 | TGTGTTGCAACAGATCCAAAGTAC | 59.964 | 41.667 | 31.81 | 15.71 | 40.05 | 2.73 |
4053 | 6381 | 6.842163 | TCACAAACTTGAAAGAGAAACACTC | 58.158 | 36.000 | 0.00 | 0.00 | 45.22 | 3.51 |
4067 | 6395 | 7.964604 | GAGAAACACTCTAGTTTTGGTATGT | 57.035 | 36.000 | 0.00 | 0.00 | 41.48 | 2.29 |
4068 | 6396 | 7.964604 | AGAAACACTCTAGTTTTGGTATGTC | 57.035 | 36.000 | 0.00 | 0.00 | 41.48 | 3.06 |
4069 | 6397 | 7.506114 | AGAAACACTCTAGTTTTGGTATGTCA | 58.494 | 34.615 | 0.00 | 0.00 | 41.48 | 3.58 |
4070 | 6398 | 7.441458 | AGAAACACTCTAGTTTTGGTATGTCAC | 59.559 | 37.037 | 0.00 | 0.00 | 41.48 | 3.67 |
4071 | 6399 | 6.420913 | ACACTCTAGTTTTGGTATGTCACT | 57.579 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
4072 | 6400 | 7.534723 | ACACTCTAGTTTTGGTATGTCACTA | 57.465 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4073 | 6401 | 7.959175 | ACACTCTAGTTTTGGTATGTCACTAA | 58.041 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4074 | 6402 | 8.426489 | ACACTCTAGTTTTGGTATGTCACTAAA | 58.574 | 33.333 | 0.00 | 0.00 | 35.98 | 1.85 |
4075 | 6403 | 9.268268 | CACTCTAGTTTTGGTATGTCACTAAAA | 57.732 | 33.333 | 0.00 | 0.00 | 43.06 | 1.52 |
4076 | 6404 | 9.841295 | ACTCTAGTTTTGGTATGTCACTAAAAA | 57.159 | 29.630 | 1.02 | 0.00 | 45.63 | 1.94 |
4132 | 6460 | 9.840427 | ATATTTTTCGTTACTGTTTTGATGAGG | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
4133 | 6461 | 6.687081 | TTTTCGTTACTGTTTTGATGAGGT | 57.313 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
4134 | 6462 | 5.666969 | TTCGTTACTGTTTTGATGAGGTG | 57.333 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
4135 | 6463 | 4.951254 | TCGTTACTGTTTTGATGAGGTGA | 58.049 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
4136 | 6464 | 4.988540 | TCGTTACTGTTTTGATGAGGTGAG | 59.011 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4137 | 6465 | 4.152402 | CGTTACTGTTTTGATGAGGTGAGG | 59.848 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
4138 | 6466 | 5.305585 | GTTACTGTTTTGATGAGGTGAGGA | 58.694 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
4139 | 6467 | 4.013267 | ACTGTTTTGATGAGGTGAGGAG | 57.987 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
4140 | 6468 | 3.244700 | ACTGTTTTGATGAGGTGAGGAGG | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4141 | 6469 | 2.040278 | TGTTTTGATGAGGTGAGGAGGG | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4142 | 6470 | 2.305927 | GTTTTGATGAGGTGAGGAGGGA | 59.694 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4143 | 6471 | 2.575921 | TTGATGAGGTGAGGAGGGAT | 57.424 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4144 | 6472 | 1.798626 | TGATGAGGTGAGGAGGGATG | 58.201 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4145 | 6473 | 1.008815 | TGATGAGGTGAGGAGGGATGT | 59.991 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
4146 | 6474 | 1.691434 | GATGAGGTGAGGAGGGATGTC | 59.309 | 57.143 | 0.00 | 0.00 | 0.00 | 3.06 |
4147 | 6475 | 0.684479 | TGAGGTGAGGAGGGATGTCG | 60.684 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4148 | 6476 | 0.684805 | GAGGTGAGGAGGGATGTCGT | 60.685 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4149 | 6477 | 0.252284 | AGGTGAGGAGGGATGTCGTT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4150 | 6478 | 0.108138 | GGTGAGGAGGGATGTCGTTG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.10 |
4151 | 6479 | 0.108138 | GTGAGGAGGGATGTCGTTGG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4152 | 6480 | 0.544357 | TGAGGAGGGATGTCGTTGGT | 60.544 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4153 | 6481 | 0.613777 | GAGGAGGGATGTCGTTGGTT | 59.386 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4154 | 6482 | 1.003233 | GAGGAGGGATGTCGTTGGTTT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
4155 | 6483 | 1.003233 | AGGAGGGATGTCGTTGGTTTC | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
4156 | 6484 | 1.271163 | GGAGGGATGTCGTTGGTTTCA | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
4157 | 6485 | 2.500229 | GAGGGATGTCGTTGGTTTCAA | 58.500 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
4158 | 6486 | 2.484264 | GAGGGATGTCGTTGGTTTCAAG | 59.516 | 50.000 | 0.00 | 0.00 | 32.92 | 3.02 |
4159 | 6487 | 2.105821 | AGGGATGTCGTTGGTTTCAAGA | 59.894 | 45.455 | 0.00 | 0.00 | 32.92 | 3.02 |
4160 | 6488 | 3.081804 | GGGATGTCGTTGGTTTCAAGAT | 58.918 | 45.455 | 0.00 | 0.00 | 32.92 | 2.40 |
4161 | 6489 | 4.019681 | AGGGATGTCGTTGGTTTCAAGATA | 60.020 | 41.667 | 0.00 | 0.00 | 32.92 | 1.98 |
4162 | 6490 | 4.094442 | GGGATGTCGTTGGTTTCAAGATAC | 59.906 | 45.833 | 0.00 | 0.00 | 32.92 | 2.24 |
4163 | 6491 | 4.693566 | GGATGTCGTTGGTTTCAAGATACA | 59.306 | 41.667 | 0.00 | 0.00 | 32.92 | 2.29 |
4164 | 6492 | 5.163854 | GGATGTCGTTGGTTTCAAGATACAG | 60.164 | 44.000 | 0.00 | 0.00 | 32.92 | 2.74 |
4165 | 6493 | 4.699637 | TGTCGTTGGTTTCAAGATACAGT | 58.300 | 39.130 | 0.00 | 0.00 | 32.92 | 3.55 |
4166 | 6494 | 4.748102 | TGTCGTTGGTTTCAAGATACAGTC | 59.252 | 41.667 | 0.00 | 0.00 | 32.92 | 3.51 |
4167 | 6495 | 4.748102 | GTCGTTGGTTTCAAGATACAGTCA | 59.252 | 41.667 | 0.00 | 0.00 | 32.92 | 3.41 |
4168 | 6496 | 5.408604 | GTCGTTGGTTTCAAGATACAGTCAT | 59.591 | 40.000 | 0.00 | 0.00 | 32.92 | 3.06 |
4169 | 6497 | 5.995282 | TCGTTGGTTTCAAGATACAGTCATT | 59.005 | 36.000 | 0.00 | 0.00 | 32.92 | 2.57 |
4170 | 6498 | 7.117236 | GTCGTTGGTTTCAAGATACAGTCATTA | 59.883 | 37.037 | 0.00 | 0.00 | 32.92 | 1.90 |
4171 | 6499 | 7.330946 | TCGTTGGTTTCAAGATACAGTCATTAG | 59.669 | 37.037 | 0.00 | 0.00 | 32.92 | 1.73 |
4172 | 6500 | 7.330946 | CGTTGGTTTCAAGATACAGTCATTAGA | 59.669 | 37.037 | 0.00 | 0.00 | 32.92 | 2.10 |
4173 | 6501 | 9.167311 | GTTGGTTTCAAGATACAGTCATTAGAT | 57.833 | 33.333 | 0.00 | 0.00 | 32.92 | 1.98 |
4174 | 6502 | 8.722480 | TGGTTTCAAGATACAGTCATTAGATG | 57.278 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
4175 | 6503 | 7.280876 | TGGTTTCAAGATACAGTCATTAGATGC | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
4176 | 6504 | 7.280876 | GGTTTCAAGATACAGTCATTAGATGCA | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.96 |
4177 | 6505 | 8.333908 | GTTTCAAGATACAGTCATTAGATGCAG | 58.666 | 37.037 | 0.00 | 0.00 | 0.00 | 4.41 |
4178 | 6506 | 7.352079 | TCAAGATACAGTCATTAGATGCAGA | 57.648 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4179 | 6507 | 7.960262 | TCAAGATACAGTCATTAGATGCAGAT | 58.040 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
4180 | 6508 | 8.087136 | TCAAGATACAGTCATTAGATGCAGATC | 58.913 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
4181 | 6509 | 7.779754 | AGATACAGTCATTAGATGCAGATCT | 57.220 | 36.000 | 0.00 | 0.00 | 42.03 | 2.75 |
4182 | 6510 | 7.604549 | AGATACAGTCATTAGATGCAGATCTG | 58.395 | 38.462 | 18.84 | 18.84 | 39.44 | 2.90 |
4183 | 6511 | 5.866159 | ACAGTCATTAGATGCAGATCTGA | 57.134 | 39.130 | 27.04 | 11.74 | 39.44 | 3.27 |
4184 | 6512 | 6.422344 | ACAGTCATTAGATGCAGATCTGAT | 57.578 | 37.500 | 27.04 | 15.87 | 39.44 | 2.90 |
4185 | 6513 | 6.224584 | ACAGTCATTAGATGCAGATCTGATG | 58.775 | 40.000 | 27.04 | 18.19 | 46.77 | 3.07 |
4206 | 6534 | 8.530269 | TGATGATCAGAAATGACGAATGATAG | 57.470 | 34.615 | 0.09 | 0.00 | 30.98 | 2.08 |
4207 | 6535 | 8.362639 | TGATGATCAGAAATGACGAATGATAGA | 58.637 | 33.333 | 0.09 | 0.00 | 30.98 | 1.98 |
4208 | 6536 | 7.936950 | TGATCAGAAATGACGAATGATAGAC | 57.063 | 36.000 | 0.00 | 0.00 | 30.98 | 2.59 |
4209 | 6537 | 7.491682 | TGATCAGAAATGACGAATGATAGACA | 58.508 | 34.615 | 0.00 | 0.00 | 30.98 | 3.41 |
4210 | 6538 | 7.436376 | TGATCAGAAATGACGAATGATAGACAC | 59.564 | 37.037 | 0.00 | 0.00 | 30.98 | 3.67 |
4211 | 6539 | 6.630071 | TCAGAAATGACGAATGATAGACACA | 58.370 | 36.000 | 0.00 | 0.00 | 0.00 | 3.72 |
4212 | 6540 | 6.531594 | TCAGAAATGACGAATGATAGACACAC | 59.468 | 38.462 | 0.00 | 0.00 | 0.00 | 3.82 |
4213 | 6541 | 5.812642 | AGAAATGACGAATGATAGACACACC | 59.187 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4214 | 6542 | 4.736126 | ATGACGAATGATAGACACACCA | 57.264 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
4215 | 6543 | 4.736126 | TGACGAATGATAGACACACCAT | 57.264 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
4216 | 6544 | 4.682787 | TGACGAATGATAGACACACCATC | 58.317 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4217 | 6545 | 4.159506 | TGACGAATGATAGACACACCATCA | 59.840 | 41.667 | 0.00 | 0.00 | 33.47 | 3.07 |
4218 | 6546 | 5.163416 | TGACGAATGATAGACACACCATCAT | 60.163 | 40.000 | 0.00 | 0.00 | 40.31 | 2.45 |
4219 | 6547 | 5.292765 | ACGAATGATAGACACACCATCATC | 58.707 | 41.667 | 0.00 | 0.00 | 38.21 | 2.92 |
4220 | 6548 | 5.163416 | ACGAATGATAGACACACCATCATCA | 60.163 | 40.000 | 0.00 | 0.00 | 38.21 | 3.07 |
4221 | 6549 | 5.176406 | CGAATGATAGACACACCATCATCAC | 59.824 | 44.000 | 0.00 | 0.00 | 38.21 | 3.06 |
4222 | 6550 | 4.406648 | TGATAGACACACCATCATCACC | 57.593 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4223 | 6551 | 3.774216 | TGATAGACACACCATCATCACCA | 59.226 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
4224 | 6552 | 4.224818 | TGATAGACACACCATCATCACCAA | 59.775 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
4225 | 6553 | 3.063510 | AGACACACCATCATCACCAAG | 57.936 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
4226 | 6554 | 2.639347 | AGACACACCATCATCACCAAGA | 59.361 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
4227 | 6555 | 3.005554 | GACACACCATCATCACCAAGAG | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4228 | 6556 | 2.373169 | ACACACCATCATCACCAAGAGT | 59.627 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
4229 | 6557 | 3.005554 | CACACCATCATCACCAAGAGTC | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4230 | 6558 | 2.909006 | ACACCATCATCACCAAGAGTCT | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
4231 | 6559 | 3.328931 | ACACCATCATCACCAAGAGTCTT | 59.671 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
4232 | 6560 | 4.202503 | ACACCATCATCACCAAGAGTCTTT | 60.203 | 41.667 | 1.56 | 0.00 | 0.00 | 2.52 |
4233 | 6561 | 4.763793 | CACCATCATCACCAAGAGTCTTTT | 59.236 | 41.667 | 1.56 | 0.00 | 0.00 | 2.27 |
4234 | 6562 | 5.939883 | CACCATCATCACCAAGAGTCTTTTA | 59.060 | 40.000 | 1.56 | 0.00 | 0.00 | 1.52 |
4235 | 6563 | 6.600822 | CACCATCATCACCAAGAGTCTTTTAT | 59.399 | 38.462 | 1.56 | 0.00 | 0.00 | 1.40 |
4236 | 6564 | 7.770433 | CACCATCATCACCAAGAGTCTTTTATA | 59.230 | 37.037 | 1.56 | 0.00 | 0.00 | 0.98 |
4237 | 6565 | 7.989741 | ACCATCATCACCAAGAGTCTTTTATAG | 59.010 | 37.037 | 1.56 | 0.00 | 0.00 | 1.31 |
4238 | 6566 | 7.443575 | CCATCATCACCAAGAGTCTTTTATAGG | 59.556 | 40.741 | 1.56 | 3.61 | 0.00 | 2.57 |
4239 | 6567 | 7.733773 | TCATCACCAAGAGTCTTTTATAGGA | 57.266 | 36.000 | 12.00 | 1.21 | 0.00 | 2.94 |
4240 | 6568 | 7.786030 | TCATCACCAAGAGTCTTTTATAGGAG | 58.214 | 38.462 | 12.00 | 5.51 | 0.00 | 3.69 |
4241 | 6569 | 7.400339 | TCATCACCAAGAGTCTTTTATAGGAGT | 59.600 | 37.037 | 12.00 | 0.00 | 0.00 | 3.85 |
4242 | 6570 | 8.696374 | CATCACCAAGAGTCTTTTATAGGAGTA | 58.304 | 37.037 | 12.00 | 0.00 | 0.00 | 2.59 |
4243 | 6571 | 8.294954 | TCACCAAGAGTCTTTTATAGGAGTAG | 57.705 | 38.462 | 12.00 | 1.69 | 0.00 | 2.57 |
4244 | 6572 | 8.114102 | TCACCAAGAGTCTTTTATAGGAGTAGA | 58.886 | 37.037 | 12.00 | 3.52 | 0.00 | 2.59 |
4245 | 6573 | 8.410141 | CACCAAGAGTCTTTTATAGGAGTAGAG | 58.590 | 40.741 | 12.00 | 0.00 | 0.00 | 2.43 |
4246 | 6574 | 8.337739 | ACCAAGAGTCTTTTATAGGAGTAGAGA | 58.662 | 37.037 | 12.00 | 0.00 | 0.00 | 3.10 |
4247 | 6575 | 9.191479 | CCAAGAGTCTTTTATAGGAGTAGAGAA | 57.809 | 37.037 | 1.56 | 0.00 | 0.00 | 2.87 |
4347 | 6675 | 7.727181 | TGCAAATAGAGGGAGTAGTTAAGATC | 58.273 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
4352 | 6680 | 5.623169 | AGAGGGAGTAGTTAAGATCCTACG | 58.377 | 45.833 | 0.00 | 0.00 | 38.82 | 3.51 |
4353 | 6681 | 4.727677 | AGGGAGTAGTTAAGATCCTACGG | 58.272 | 47.826 | 0.00 | 0.00 | 38.82 | 4.02 |
4362 | 6690 | 2.005971 | AGATCCTACGGTTTGCGTTC | 57.994 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
4364 | 6692 | 0.611714 | ATCCTACGGTTTGCGTTCCT | 59.388 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4366 | 6694 | 1.067635 | TCCTACGGTTTGCGTTCCTAC | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
4368 | 6696 | 0.678395 | TACGGTTTGCGTTCCTACCA | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
4369 | 6697 | 0.179051 | ACGGTTTGCGTTCCTACCAA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4370 | 6698 | 0.236449 | CGGTTTGCGTTCCTACCAAC | 59.764 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4375 | 6703 | 4.180496 | CGTTCCTACCAACGGAGC | 57.820 | 61.111 | 0.00 | 0.00 | 44.43 | 4.70 |
4376 | 6704 | 1.590147 | CGTTCCTACCAACGGAGCT | 59.410 | 57.895 | 0.00 | 0.00 | 44.43 | 4.09 |
4377 | 6705 | 0.458025 | CGTTCCTACCAACGGAGCTC | 60.458 | 60.000 | 4.71 | 4.71 | 44.43 | 4.09 |
4378 | 6706 | 0.108281 | GTTCCTACCAACGGAGCTCC | 60.108 | 60.000 | 23.79 | 23.79 | 0.00 | 4.70 |
4379 | 6707 | 0.543410 | TTCCTACCAACGGAGCTCCA | 60.543 | 55.000 | 31.67 | 10.79 | 35.14 | 3.86 |
4380 | 6708 | 0.325296 | TCCTACCAACGGAGCTCCAT | 60.325 | 55.000 | 31.67 | 15.92 | 35.14 | 3.41 |
4381 | 6709 | 0.179073 | CCTACCAACGGAGCTCCATG | 60.179 | 60.000 | 31.67 | 26.71 | 35.14 | 3.66 |
4382 | 6710 | 0.824109 | CTACCAACGGAGCTCCATGA | 59.176 | 55.000 | 31.67 | 13.73 | 35.14 | 3.07 |
4383 | 6711 | 0.535335 | TACCAACGGAGCTCCATGAC | 59.465 | 55.000 | 31.67 | 5.16 | 35.14 | 3.06 |
4384 | 6712 | 1.296392 | CCAACGGAGCTCCATGACA | 59.704 | 57.895 | 31.67 | 0.00 | 35.14 | 3.58 |
4385 | 6713 | 0.321564 | CCAACGGAGCTCCATGACAA | 60.322 | 55.000 | 31.67 | 0.00 | 35.14 | 3.18 |
4386 | 6714 | 0.798776 | CAACGGAGCTCCATGACAAC | 59.201 | 55.000 | 31.67 | 2.83 | 35.14 | 3.32 |
4387 | 6715 | 0.670546 | AACGGAGCTCCATGACAACG | 60.671 | 55.000 | 31.67 | 17.17 | 35.14 | 4.10 |
4388 | 6716 | 1.215382 | CGGAGCTCCATGACAACGA | 59.785 | 57.895 | 31.67 | 0.00 | 35.14 | 3.85 |
4419 | 6747 | 3.969287 | TCCGATCCAGGATCATGATTC | 57.031 | 47.619 | 26.37 | 7.94 | 38.84 | 2.52 |
4433 | 6761 | 5.363562 | TCATGATTCTGACTACCTTGCAT | 57.636 | 39.130 | 0.00 | 0.00 | 0.00 | 3.96 |
4434 | 6762 | 6.484364 | TCATGATTCTGACTACCTTGCATA | 57.516 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
4439 | 6767 | 7.966812 | TGATTCTGACTACCTTGCATACATAT | 58.033 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
4443 | 6771 | 8.650143 | TCTGACTACCTTGCATACATATATCA | 57.350 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
4444 | 6772 | 8.743714 | TCTGACTACCTTGCATACATATATCAG | 58.256 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
4445 | 6773 | 8.650143 | TGACTACCTTGCATACATATATCAGA | 57.350 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
4446 | 6774 | 9.088987 | TGACTACCTTGCATACATATATCAGAA | 57.911 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
4447 | 6775 | 9.360093 | GACTACCTTGCATACATATATCAGAAC | 57.640 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4448 | 6776 | 8.870116 | ACTACCTTGCATACATATATCAGAACA | 58.130 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
4449 | 6777 | 9.363763 | CTACCTTGCATACATATATCAGAACAG | 57.636 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 3.627577 | GCAACCATTGATACGTCTCCAAT | 59.372 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
87 | 88 | 3.917760 | GCTGTATCGCCCCTCGCT | 61.918 | 66.667 | 0.00 | 0.00 | 38.27 | 4.93 |
99 | 100 | 4.485834 | CGTACCGCGCCTGCTGTA | 62.486 | 66.667 | 0.00 | 0.00 | 39.43 | 2.74 |
121 | 122 | 3.722295 | CGGCGACCAACATTGCGT | 61.722 | 61.111 | 0.00 | 0.00 | 0.00 | 5.24 |
158 | 163 | 1.523711 | CCCATTACAGCGCCACGAT | 60.524 | 57.895 | 2.29 | 0.00 | 0.00 | 3.73 |
159 | 164 | 2.125310 | CCCATTACAGCGCCACGA | 60.125 | 61.111 | 2.29 | 0.00 | 0.00 | 4.35 |
232 | 246 | 2.514592 | CATCAAGGCGGCGACCAT | 60.515 | 61.111 | 10.28 | 0.00 | 0.00 | 3.55 |
250 | 275 | 1.811266 | TCGATCTTGGCGAGCTTGC | 60.811 | 57.895 | 18.32 | 18.32 | 33.33 | 4.01 |
252 | 277 | 1.517257 | CGTCGATCTTGGCGAGCTT | 60.517 | 57.895 | 0.00 | 0.00 | 38.59 | 3.74 |
354 | 379 | 2.401766 | CGCCTCCTGTTGCATGGTC | 61.402 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
407 | 432 | 1.484653 | GAGGGCCACAACAACCTTTTT | 59.515 | 47.619 | 6.18 | 0.00 | 32.42 | 1.94 |
409 | 434 | 0.759060 | GGAGGGCCACAACAACCTTT | 60.759 | 55.000 | 6.18 | 0.00 | 32.42 | 3.11 |
457 | 482 | 0.248336 | TCATCGCCGTATGTGTCGTC | 60.248 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
460 | 485 | 1.200483 | CTGTCATCGCCGTATGTGTC | 58.800 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
465 | 499 | 1.588932 | CGCACTGTCATCGCCGTAT | 60.589 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
466 | 500 | 2.202557 | CGCACTGTCATCGCCGTA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
474 | 508 | 2.994387 | CTTGTCCTGCCGCACTGTCA | 62.994 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
504 | 538 | 3.325716 | ACCTAAAACGTACCACCTCACAT | 59.674 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
506 | 540 | 3.391506 | ACCTAAAACGTACCACCTCAC | 57.608 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
589 | 634 | 3.951979 | ATCGACCGATTTCATTCAAGC | 57.048 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
603 | 648 | 5.116528 | GGACGAAATTCAAACAAAATCGACC | 59.883 | 40.000 | 0.00 | 0.00 | 36.75 | 4.79 |
609 | 654 | 6.647067 | ACAAACTGGACGAAATTCAAACAAAA | 59.353 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
658 | 703 | 1.300697 | GGTAATCCAGCGCTACCCG | 60.301 | 63.158 | 10.99 | 0.00 | 40.75 | 5.28 |
667 | 712 | 0.249741 | CCCGGTAAGCGGTAATCCAG | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
673 | 718 | 2.350458 | GGACACCCGGTAAGCGGTA | 61.350 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
674 | 719 | 3.698820 | GGACACCCGGTAAGCGGT | 61.699 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
681 | 726 | 2.359478 | GCGATTTGGACACCCGGT | 60.359 | 61.111 | 0.00 | 0.00 | 34.29 | 5.28 |
685 | 730 | 3.131478 | CGGGGCGATTTGGACACC | 61.131 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
686 | 731 | 3.131478 | CCGGGGCGATTTGGACAC | 61.131 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
700 | 1209 | 4.341502 | CACCTGGTTTTGCGCCGG | 62.342 | 66.667 | 4.18 | 0.00 | 0.00 | 6.13 |
777 | 1297 | 3.378427 | GCGGCTTTTGTTATCAGGAGAAT | 59.622 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
978 | 1498 | 1.004918 | CGACGGACTCCTGCCTTTT | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 2.27 |
1216 | 1736 | 6.553524 | ACTCATACAAGCGAGTACTACTTTC | 58.446 | 40.000 | 7.70 | 0.00 | 40.67 | 2.62 |
1217 | 1737 | 6.404513 | GGACTCATACAAGCGAGTACTACTTT | 60.405 | 42.308 | 7.70 | 4.03 | 42.48 | 2.66 |
1229 | 1749 | 7.553044 | ACAAATTAAGTAGGGACTCATACAAGC | 59.447 | 37.037 | 0.00 | 0.00 | 41.75 | 4.01 |
1375 | 1898 | 6.268617 | TCTGCATAGCATAGTAGGACAGAATT | 59.731 | 38.462 | 0.00 | 0.00 | 38.13 | 2.17 |
1376 | 1899 | 5.777223 | TCTGCATAGCATAGTAGGACAGAAT | 59.223 | 40.000 | 0.00 | 0.00 | 38.13 | 2.40 |
1403 | 1928 | 9.109393 | CATTCAATAATATATACCGGGAAGTGG | 57.891 | 37.037 | 6.32 | 0.00 | 0.00 | 4.00 |
1449 | 1974 | 8.401490 | CCTTGAGGGAATCCATCTTTTTATAG | 57.599 | 38.462 | 15.36 | 1.88 | 37.23 | 1.31 |
1635 | 2162 | 7.065563 | GCCAGCTAAAGTTCTCATGATATATGG | 59.934 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
1653 | 2180 | 3.012518 | GCTTCTTGAATGAGCCAGCTAA | 58.987 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
1684 | 2211 | 4.340097 | GGTGGCCTGTACAAACTTAAACTT | 59.660 | 41.667 | 3.32 | 0.00 | 0.00 | 2.66 |
1742 | 2270 | 6.661304 | AGAAAGATGAAGGAAATTGCAACT | 57.339 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1887 | 2415 | 2.344025 | CCGTCCTGTAAAGTAGTTGCC | 58.656 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
1928 | 2456 | 6.121590 | TGCAATATCAAGTTCTCCTATGCAA | 58.878 | 36.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2180 | 2708 | 7.755582 | TTCACTATTGTCATCTTCATACACG | 57.244 | 36.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2327 | 2855 | 4.827284 | ACTGACCTAAAGTTTTCACATGGG | 59.173 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
2606 | 3134 | 4.083271 | CCATTCTCGAAGAACCAAGAAACC | 60.083 | 45.833 | 0.35 | 0.00 | 37.00 | 3.27 |
2621 | 3149 | 2.654749 | TCAGTGTAGCACCATTCTCG | 57.345 | 50.000 | 0.00 | 0.00 | 34.49 | 4.04 |
2630 | 3158 | 7.386059 | TCATATCTTTCTTGTTCAGTGTAGCA | 58.614 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
2714 | 3242 | 2.832129 | GAGGTCAATCCAGTACTCACCA | 59.168 | 50.000 | 0.00 | 0.00 | 39.02 | 4.17 |
2768 | 3296 | 3.600388 | CTCGGCACTCTTCAAATTACCT | 58.400 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
2864 | 3392 | 1.153449 | CTTTATCGTCGCTGGCCCA | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
2873 | 3401 | 3.071479 | TGCAAGTCCAACCTTTATCGTC | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
2975 | 3503 | 3.523547 | TGAGTAGTAGACAGACGAGAGC | 58.476 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2981 | 3509 | 4.004314 | TGTGCTCTGAGTAGTAGACAGAC | 58.996 | 47.826 | 6.53 | 0.00 | 36.04 | 3.51 |
3011 | 3539 | 2.484062 | GCAAGCATCCACCCATCCG | 61.484 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
3023 | 3551 | 0.321346 | TGAACTCCAGATCGCAAGCA | 59.679 | 50.000 | 0.00 | 0.00 | 37.18 | 3.91 |
3068 | 3596 | 1.019673 | CGTGCCCATTCCTTGATGAG | 58.980 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3071 | 3599 | 0.611618 | TTGCGTGCCCATTCCTTGAT | 60.612 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3074 | 3602 | 2.639327 | GCTTGCGTGCCCATTCCTT | 61.639 | 57.895 | 0.00 | 0.00 | 0.00 | 3.36 |
3143 | 3671 | 2.222508 | CCGTGCGACGTCATTTCTTAAG | 60.223 | 50.000 | 17.16 | 0.00 | 40.58 | 1.85 |
3170 | 3698 | 2.217393 | CGTGCTAGAATCGATTGACAGC | 59.783 | 50.000 | 16.96 | 19.20 | 0.00 | 4.40 |
3185 | 3713 | 4.207955 | AGATGATCTTGTACCTCGTGCTA | 58.792 | 43.478 | 0.00 | 0.00 | 0.00 | 3.49 |
3212 | 3740 | 3.468140 | GCGTCCCCCAGGTACTCC | 61.468 | 72.222 | 0.00 | 0.00 | 34.60 | 3.85 |
3422 | 3950 | 1.386533 | GCTCATCACCATCCCAGTTG | 58.613 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3465 | 3993 | 3.753294 | ATAAGCAACAGGGATAGACCG | 57.247 | 47.619 | 0.00 | 0.00 | 40.11 | 4.79 |
3525 | 4053 | 8.464770 | TTGCAAAGCTTTATCAATACATCAAC | 57.535 | 30.769 | 12.25 | 0.00 | 0.00 | 3.18 |
3526 | 4054 | 8.522003 | TCTTGCAAAGCTTTATCAATACATCAA | 58.478 | 29.630 | 19.82 | 8.72 | 45.70 | 2.57 |
3531 | 4059 | 6.969473 | GTCCTCTTGCAAAGCTTTATCAATAC | 59.031 | 38.462 | 19.82 | 14.07 | 45.70 | 1.89 |
3560 | 4088 | 6.183360 | TGTGATCTAGAAATACCCAGCACTAC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
3576 | 4104 | 5.618056 | ACAACACTGCAATTGTGATCTAG | 57.382 | 39.130 | 11.19 | 0.00 | 37.64 | 2.43 |
3609 | 4137 | 3.447742 | CAGAGCGGCACTTTTTCTTTTT | 58.552 | 40.909 | 1.45 | 0.00 | 0.00 | 1.94 |
3610 | 4138 | 2.223805 | CCAGAGCGGCACTTTTTCTTTT | 60.224 | 45.455 | 1.45 | 0.00 | 0.00 | 2.27 |
3611 | 4139 | 1.338020 | CCAGAGCGGCACTTTTTCTTT | 59.662 | 47.619 | 1.45 | 0.00 | 0.00 | 2.52 |
3612 | 4140 | 0.954452 | CCAGAGCGGCACTTTTTCTT | 59.046 | 50.000 | 1.45 | 0.00 | 0.00 | 2.52 |
3613 | 4141 | 2.633860 | CCAGAGCGGCACTTTTTCT | 58.366 | 52.632 | 1.45 | 0.00 | 0.00 | 2.52 |
3623 | 4153 | 0.247736 | AAACTAGACAGCCAGAGCGG | 59.752 | 55.000 | 0.00 | 0.00 | 46.67 | 5.52 |
3647 | 4177 | 1.832883 | ATGCAAAATGCTGGGACGTA | 58.167 | 45.000 | 3.78 | 0.00 | 45.31 | 3.57 |
3648 | 4178 | 0.968405 | AATGCAAAATGCTGGGACGT | 59.032 | 45.000 | 3.78 | 0.00 | 45.31 | 4.34 |
3649 | 4179 | 1.994779 | GAAATGCAAAATGCTGGGACG | 59.005 | 47.619 | 3.78 | 0.00 | 45.31 | 4.79 |
3682 | 4212 | 5.446860 | TCAGTAATACTCACTTCCTCGGAT | 58.553 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
3685 | 4215 | 7.095144 | ACGATATCAGTAATACTCACTTCCTCG | 60.095 | 40.741 | 3.12 | 0.00 | 0.00 | 4.63 |
3719 | 4250 | 4.022068 | GCAAAATGGTTCTGGTTGAGATCA | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
3725 | 4256 | 4.213906 | GGAAATGCAAAATGGTTCTGGTTG | 59.786 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
3753 | 5910 | 4.467795 | CCATCACTTCCTCAGGAGAACTAA | 59.532 | 45.833 | 0.00 | 0.00 | 31.21 | 2.24 |
3788 | 5945 | 5.471456 | CGATATCATCCCTTCCCTCAAAAAG | 59.529 | 44.000 | 3.12 | 0.00 | 0.00 | 2.27 |
3793 | 5950 | 3.165875 | GACGATATCATCCCTTCCCTCA | 58.834 | 50.000 | 3.12 | 0.00 | 0.00 | 3.86 |
3794 | 5951 | 2.498078 | GGACGATATCATCCCTTCCCTC | 59.502 | 54.545 | 6.56 | 0.00 | 0.00 | 4.30 |
3795 | 5952 | 2.158158 | TGGACGATATCATCCCTTCCCT | 60.158 | 50.000 | 15.02 | 0.00 | 33.69 | 4.20 |
3796 | 5953 | 2.028020 | GTGGACGATATCATCCCTTCCC | 60.028 | 54.545 | 15.02 | 0.00 | 33.69 | 3.97 |
3797 | 5954 | 2.900546 | AGTGGACGATATCATCCCTTCC | 59.099 | 50.000 | 15.02 | 4.81 | 33.69 | 3.46 |
3798 | 5955 | 3.574396 | TCAGTGGACGATATCATCCCTTC | 59.426 | 47.826 | 15.02 | 6.10 | 33.69 | 3.46 |
3799 | 5956 | 3.576861 | TCAGTGGACGATATCATCCCTT | 58.423 | 45.455 | 15.02 | 0.63 | 33.69 | 3.95 |
3800 | 5957 | 3.244887 | TCAGTGGACGATATCATCCCT | 57.755 | 47.619 | 15.02 | 8.84 | 33.69 | 4.20 |
3801 | 5958 | 3.574396 | TCTTCAGTGGACGATATCATCCC | 59.426 | 47.826 | 15.02 | 6.76 | 33.69 | 3.85 |
3802 | 5959 | 4.855715 | TCTTCAGTGGACGATATCATCC | 57.144 | 45.455 | 10.97 | 10.97 | 35.37 | 3.51 |
3803 | 5960 | 5.837437 | AGTTCTTCAGTGGACGATATCATC | 58.163 | 41.667 | 3.12 | 0.00 | 0.00 | 2.92 |
3804 | 5961 | 5.860941 | AGTTCTTCAGTGGACGATATCAT | 57.139 | 39.130 | 3.12 | 0.00 | 0.00 | 2.45 |
3806 | 5963 | 6.476053 | GGTTTAGTTCTTCAGTGGACGATATC | 59.524 | 42.308 | 0.00 | 0.00 | 0.00 | 1.63 |
3807 | 5964 | 6.070995 | TGGTTTAGTTCTTCAGTGGACGATAT | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
3809 | 5966 | 4.039973 | TGGTTTAGTTCTTCAGTGGACGAT | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 3.73 |
3978 | 6306 | 1.066752 | CAACACACGGACAGTCGGA | 59.933 | 57.895 | 14.73 | 0.00 | 0.00 | 4.55 |
3979 | 6307 | 2.594962 | GCAACACACGGACAGTCGG | 61.595 | 63.158 | 6.57 | 6.57 | 0.00 | 4.79 |
3980 | 6308 | 1.425267 | TTGCAACACACGGACAGTCG | 61.425 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3981 | 6309 | 0.027586 | GTTGCAACACACGGACAGTC | 59.972 | 55.000 | 24.52 | 0.00 | 0.00 | 3.51 |
3982 | 6310 | 0.675208 | TGTTGCAACACACGGACAGT | 60.675 | 50.000 | 27.96 | 0.00 | 33.17 | 3.55 |
3983 | 6311 | 0.027979 | CTGTTGCAACACACGGACAG | 59.972 | 55.000 | 27.96 | 12.17 | 34.70 | 3.51 |
3984 | 6312 | 0.391793 | TCTGTTGCAACACACGGACA | 60.392 | 50.000 | 27.96 | 5.77 | 34.70 | 4.02 |
3985 | 6313 | 0.944386 | ATCTGTTGCAACACACGGAC | 59.056 | 50.000 | 27.96 | 0.45 | 34.70 | 4.79 |
3986 | 6314 | 1.225855 | GATCTGTTGCAACACACGGA | 58.774 | 50.000 | 27.96 | 22.46 | 34.70 | 4.69 |
3992 | 6320 | 4.460263 | AGTACTTTGGATCTGTTGCAACA | 58.540 | 39.130 | 29.36 | 29.36 | 35.14 | 3.33 |
4045 | 6373 | 7.441458 | AGTGACATACCAAAACTAGAGTGTTTC | 59.559 | 37.037 | 0.00 | 0.00 | 38.98 | 2.78 |
4106 | 6434 | 9.840427 | CCTCATCAAAACAGTAACGAAAAATAT | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4107 | 6435 | 8.842280 | ACCTCATCAAAACAGTAACGAAAAATA | 58.158 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4108 | 6436 | 7.647715 | CACCTCATCAAAACAGTAACGAAAAAT | 59.352 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4109 | 6437 | 6.970043 | CACCTCATCAAAACAGTAACGAAAAA | 59.030 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
4110 | 6438 | 6.316640 | TCACCTCATCAAAACAGTAACGAAAA | 59.683 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
4111 | 6439 | 5.818336 | TCACCTCATCAAAACAGTAACGAAA | 59.182 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4112 | 6440 | 5.361427 | TCACCTCATCAAAACAGTAACGAA | 58.639 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
4113 | 6441 | 4.951254 | TCACCTCATCAAAACAGTAACGA | 58.049 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
4114 | 6442 | 4.152402 | CCTCACCTCATCAAAACAGTAACG | 59.848 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
4115 | 6443 | 5.305585 | TCCTCACCTCATCAAAACAGTAAC | 58.694 | 41.667 | 0.00 | 0.00 | 0.00 | 2.50 |
4116 | 6444 | 5.513094 | CCTCCTCACCTCATCAAAACAGTAA | 60.513 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4117 | 6445 | 4.020218 | CCTCCTCACCTCATCAAAACAGTA | 60.020 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
4118 | 6446 | 3.244700 | CCTCCTCACCTCATCAAAACAGT | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
4119 | 6447 | 3.341823 | CCTCCTCACCTCATCAAAACAG | 58.658 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4120 | 6448 | 2.040278 | CCCTCCTCACCTCATCAAAACA | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4121 | 6449 | 2.305927 | TCCCTCCTCACCTCATCAAAAC | 59.694 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4122 | 6450 | 2.631384 | TCCCTCCTCACCTCATCAAAA | 58.369 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
4123 | 6451 | 2.342406 | TCCCTCCTCACCTCATCAAA | 57.658 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4124 | 6452 | 2.121948 | CATCCCTCCTCACCTCATCAA | 58.878 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
4125 | 6453 | 1.008815 | ACATCCCTCCTCACCTCATCA | 59.991 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
4126 | 6454 | 1.691434 | GACATCCCTCCTCACCTCATC | 59.309 | 57.143 | 0.00 | 0.00 | 0.00 | 2.92 |
4127 | 6455 | 1.799933 | GACATCCCTCCTCACCTCAT | 58.200 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4128 | 6456 | 0.684479 | CGACATCCCTCCTCACCTCA | 60.684 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4129 | 6457 | 0.684805 | ACGACATCCCTCCTCACCTC | 60.685 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4130 | 6458 | 0.252284 | AACGACATCCCTCCTCACCT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4131 | 6459 | 0.108138 | CAACGACATCCCTCCTCACC | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4132 | 6460 | 0.108138 | CCAACGACATCCCTCCTCAC | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4133 | 6461 | 0.544357 | ACCAACGACATCCCTCCTCA | 60.544 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4134 | 6462 | 0.613777 | AACCAACGACATCCCTCCTC | 59.386 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4135 | 6463 | 1.003233 | GAAACCAACGACATCCCTCCT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
4136 | 6464 | 1.271163 | TGAAACCAACGACATCCCTCC | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
4137 | 6465 | 2.178912 | TGAAACCAACGACATCCCTC | 57.821 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4138 | 6466 | 2.105821 | TCTTGAAACCAACGACATCCCT | 59.894 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
4139 | 6467 | 2.500229 | TCTTGAAACCAACGACATCCC | 58.500 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
4140 | 6468 | 4.693566 | TGTATCTTGAAACCAACGACATCC | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4141 | 6469 | 5.408604 | ACTGTATCTTGAAACCAACGACATC | 59.591 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4142 | 6470 | 5.305585 | ACTGTATCTTGAAACCAACGACAT | 58.694 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
4143 | 6471 | 4.699637 | ACTGTATCTTGAAACCAACGACA | 58.300 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
4144 | 6472 | 4.748102 | TGACTGTATCTTGAAACCAACGAC | 59.252 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
4145 | 6473 | 4.951254 | TGACTGTATCTTGAAACCAACGA | 58.049 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
4146 | 6474 | 5.862924 | ATGACTGTATCTTGAAACCAACG | 57.137 | 39.130 | 0.00 | 0.00 | 0.00 | 4.10 |
4147 | 6475 | 8.547967 | TCTAATGACTGTATCTTGAAACCAAC | 57.452 | 34.615 | 0.00 | 0.00 | 0.00 | 3.77 |
4148 | 6476 | 9.166173 | CATCTAATGACTGTATCTTGAAACCAA | 57.834 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
4149 | 6477 | 7.280876 | GCATCTAATGACTGTATCTTGAAACCA | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
4150 | 6478 | 7.280876 | TGCATCTAATGACTGTATCTTGAAACC | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
4151 | 6479 | 8.201554 | TGCATCTAATGACTGTATCTTGAAAC | 57.798 | 34.615 | 0.00 | 0.00 | 0.00 | 2.78 |
4152 | 6480 | 8.260114 | TCTGCATCTAATGACTGTATCTTGAAA | 58.740 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
4153 | 6481 | 7.785033 | TCTGCATCTAATGACTGTATCTTGAA | 58.215 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
4154 | 6482 | 7.352079 | TCTGCATCTAATGACTGTATCTTGA | 57.648 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4155 | 6483 | 8.089597 | AGATCTGCATCTAATGACTGTATCTTG | 58.910 | 37.037 | 0.00 | 0.00 | 37.63 | 3.02 |
4156 | 6484 | 8.089597 | CAGATCTGCATCTAATGACTGTATCTT | 58.910 | 37.037 | 10.38 | 0.00 | 37.25 | 2.40 |
4157 | 6485 | 7.450944 | TCAGATCTGCATCTAATGACTGTATCT | 59.549 | 37.037 | 18.36 | 0.00 | 37.25 | 1.98 |
4158 | 6486 | 7.600960 | TCAGATCTGCATCTAATGACTGTATC | 58.399 | 38.462 | 18.36 | 0.00 | 37.25 | 2.24 |
4159 | 6487 | 7.536159 | TCAGATCTGCATCTAATGACTGTAT | 57.464 | 36.000 | 18.36 | 0.00 | 37.25 | 2.29 |
4160 | 6488 | 6.966534 | TCAGATCTGCATCTAATGACTGTA | 57.033 | 37.500 | 18.36 | 0.00 | 37.25 | 2.74 |
4161 | 6489 | 5.866159 | TCAGATCTGCATCTAATGACTGT | 57.134 | 39.130 | 18.36 | 0.00 | 37.25 | 3.55 |
4162 | 6490 | 6.456501 | TCATCAGATCTGCATCTAATGACTG | 58.543 | 40.000 | 18.36 | 0.00 | 38.45 | 3.51 |
4163 | 6491 | 6.667558 | TCATCAGATCTGCATCTAATGACT | 57.332 | 37.500 | 18.36 | 0.00 | 38.45 | 3.41 |
4164 | 6492 | 7.097834 | TGATCATCAGATCTGCATCTAATGAC | 58.902 | 38.462 | 18.36 | 13.70 | 43.81 | 3.06 |
4165 | 6493 | 7.241042 | TGATCATCAGATCTGCATCTAATGA | 57.759 | 36.000 | 18.36 | 18.86 | 44.72 | 2.57 |
4180 | 6508 | 6.839820 | TCATTCGTCATTTCTGATCATCAG | 57.160 | 37.500 | 8.54 | 8.54 | 45.59 | 2.90 |
4181 | 6509 | 8.362639 | TCTATCATTCGTCATTTCTGATCATCA | 58.637 | 33.333 | 0.00 | 0.00 | 32.98 | 3.07 |
4182 | 6510 | 8.646356 | GTCTATCATTCGTCATTTCTGATCATC | 58.354 | 37.037 | 0.00 | 0.00 | 32.98 | 2.92 |
4183 | 6511 | 8.146412 | TGTCTATCATTCGTCATTTCTGATCAT | 58.854 | 33.333 | 0.00 | 0.00 | 32.98 | 2.45 |
4184 | 6512 | 7.436376 | GTGTCTATCATTCGTCATTTCTGATCA | 59.564 | 37.037 | 0.00 | 0.00 | 32.98 | 2.92 |
4185 | 6513 | 7.436376 | TGTGTCTATCATTCGTCATTTCTGATC | 59.564 | 37.037 | 0.00 | 0.00 | 32.98 | 2.92 |
4186 | 6514 | 7.223582 | GTGTGTCTATCATTCGTCATTTCTGAT | 59.776 | 37.037 | 0.00 | 0.00 | 32.98 | 2.90 |
4187 | 6515 | 6.531594 | GTGTGTCTATCATTCGTCATTTCTGA | 59.468 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
4188 | 6516 | 6.237942 | GGTGTGTCTATCATTCGTCATTTCTG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
4189 | 6517 | 5.812642 | GGTGTGTCTATCATTCGTCATTTCT | 59.187 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4190 | 6518 | 5.580691 | TGGTGTGTCTATCATTCGTCATTTC | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4191 | 6519 | 5.487433 | TGGTGTGTCTATCATTCGTCATTT | 58.513 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
4192 | 6520 | 5.084818 | TGGTGTGTCTATCATTCGTCATT | 57.915 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
4193 | 6521 | 4.736126 | TGGTGTGTCTATCATTCGTCAT | 57.264 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
4194 | 6522 | 4.159506 | TGATGGTGTGTCTATCATTCGTCA | 59.840 | 41.667 | 0.00 | 0.00 | 38.73 | 4.35 |
4195 | 6523 | 4.682787 | TGATGGTGTGTCTATCATTCGTC | 58.317 | 43.478 | 0.00 | 0.00 | 38.73 | 4.20 |
4196 | 6524 | 4.736126 | TGATGGTGTGTCTATCATTCGT | 57.264 | 40.909 | 0.00 | 0.00 | 38.73 | 3.85 |
4201 | 6529 | 3.774216 | TGGTGATGATGGTGTGTCTATCA | 59.226 | 43.478 | 0.00 | 0.00 | 45.46 | 2.15 |
4202 | 6530 | 4.406648 | TGGTGATGATGGTGTGTCTATC | 57.593 | 45.455 | 0.00 | 0.00 | 35.10 | 2.08 |
4203 | 6531 | 4.471025 | TCTTGGTGATGATGGTGTGTCTAT | 59.529 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
4204 | 6532 | 3.837731 | TCTTGGTGATGATGGTGTGTCTA | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
4205 | 6533 | 2.639347 | TCTTGGTGATGATGGTGTGTCT | 59.361 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
4206 | 6534 | 3.005554 | CTCTTGGTGATGATGGTGTGTC | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4207 | 6535 | 2.373169 | ACTCTTGGTGATGATGGTGTGT | 59.627 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
4208 | 6536 | 3.005554 | GACTCTTGGTGATGATGGTGTG | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
4209 | 6537 | 2.909006 | AGACTCTTGGTGATGATGGTGT | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
4210 | 6538 | 3.623906 | AGACTCTTGGTGATGATGGTG | 57.376 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
4211 | 6539 | 4.647564 | AAAGACTCTTGGTGATGATGGT | 57.352 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
4212 | 6540 | 7.443575 | CCTATAAAAGACTCTTGGTGATGATGG | 59.556 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
4213 | 6541 | 8.206867 | TCCTATAAAAGACTCTTGGTGATGATG | 58.793 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
4214 | 6542 | 8.324191 | TCCTATAAAAGACTCTTGGTGATGAT | 57.676 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
4215 | 6543 | 7.400339 | ACTCCTATAAAAGACTCTTGGTGATGA | 59.600 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
4216 | 6544 | 7.560368 | ACTCCTATAAAAGACTCTTGGTGATG | 58.440 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
4217 | 6545 | 7.741554 | ACTCCTATAAAAGACTCTTGGTGAT | 57.258 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4218 | 6546 | 8.114102 | TCTACTCCTATAAAAGACTCTTGGTGA | 58.886 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
4219 | 6547 | 8.294954 | TCTACTCCTATAAAAGACTCTTGGTG | 57.705 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
4220 | 6548 | 8.337739 | TCTCTACTCCTATAAAAGACTCTTGGT | 58.662 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
4221 | 6549 | 8.754991 | TCTCTACTCCTATAAAAGACTCTTGG | 57.245 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
4319 | 6647 | 8.548877 | TCTTAACTACTCCCTCTATTTGCAAAT | 58.451 | 33.333 | 26.72 | 26.72 | 0.00 | 2.32 |
4321 | 6649 | 7.490657 | TCTTAACTACTCCCTCTATTTGCAA | 57.509 | 36.000 | 0.00 | 0.00 | 0.00 | 4.08 |
4323 | 6651 | 7.015779 | AGGATCTTAACTACTCCCTCTATTTGC | 59.984 | 40.741 | 0.00 | 0.00 | 0.00 | 3.68 |
4324 | 6652 | 8.485578 | AGGATCTTAACTACTCCCTCTATTTG | 57.514 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
4326 | 6654 | 7.884354 | CGTAGGATCTTAACTACTCCCTCTATT | 59.116 | 40.741 | 0.00 | 0.00 | 37.90 | 1.73 |
4327 | 6655 | 7.396418 | CGTAGGATCTTAACTACTCCCTCTAT | 58.604 | 42.308 | 0.00 | 0.00 | 37.90 | 1.98 |
4328 | 6656 | 6.767456 | CGTAGGATCTTAACTACTCCCTCTA | 58.233 | 44.000 | 0.00 | 0.00 | 37.90 | 2.43 |
4352 | 6680 | 0.236449 | CGTTGGTAGGAACGCAAACC | 59.764 | 55.000 | 0.00 | 0.00 | 41.98 | 3.27 |
4353 | 6681 | 0.236449 | CCGTTGGTAGGAACGCAAAC | 59.764 | 55.000 | 0.00 | 0.00 | 45.89 | 2.93 |
4362 | 6690 | 0.179073 | CATGGAGCTCCGTTGGTAGG | 60.179 | 60.000 | 25.46 | 9.02 | 39.43 | 3.18 |
4364 | 6692 | 0.535335 | GTCATGGAGCTCCGTTGGTA | 59.465 | 55.000 | 25.46 | 7.80 | 39.43 | 3.25 |
4366 | 6694 | 0.321564 | TTGTCATGGAGCTCCGTTGG | 60.322 | 55.000 | 25.46 | 14.97 | 39.43 | 3.77 |
4368 | 6696 | 0.670546 | CGTTGTCATGGAGCTCCGTT | 60.671 | 55.000 | 25.46 | 13.57 | 39.43 | 4.44 |
4369 | 6697 | 1.079819 | CGTTGTCATGGAGCTCCGT | 60.080 | 57.895 | 27.43 | 25.04 | 39.43 | 4.69 |
4370 | 6698 | 0.389817 | TTCGTTGTCATGGAGCTCCG | 60.390 | 55.000 | 27.43 | 14.58 | 39.43 | 4.63 |
4371 | 6699 | 1.066858 | TCTTCGTTGTCATGGAGCTCC | 60.067 | 52.381 | 26.78 | 26.78 | 0.00 | 4.70 |
4372 | 6700 | 2.266554 | CTCTTCGTTGTCATGGAGCTC | 58.733 | 52.381 | 4.71 | 4.71 | 0.00 | 4.09 |
4374 | 6702 | 0.723981 | GCTCTTCGTTGTCATGGAGC | 59.276 | 55.000 | 0.00 | 0.00 | 39.14 | 4.70 |
4375 | 6703 | 1.998315 | CAGCTCTTCGTTGTCATGGAG | 59.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4376 | 6704 | 1.344438 | ACAGCTCTTCGTTGTCATGGA | 59.656 | 47.619 | 0.00 | 0.00 | 30.63 | 3.41 |
4377 | 6705 | 1.462283 | CACAGCTCTTCGTTGTCATGG | 59.538 | 52.381 | 0.00 | 0.00 | 34.60 | 3.66 |
4378 | 6706 | 2.407090 | TCACAGCTCTTCGTTGTCATG | 58.593 | 47.619 | 0.00 | 0.00 | 34.60 | 3.07 |
4379 | 6707 | 2.820059 | TCACAGCTCTTCGTTGTCAT | 57.180 | 45.000 | 0.00 | 0.00 | 34.60 | 3.06 |
4380 | 6708 | 2.610479 | GGATCACAGCTCTTCGTTGTCA | 60.610 | 50.000 | 0.00 | 0.00 | 34.60 | 3.58 |
4381 | 6709 | 1.996191 | GGATCACAGCTCTTCGTTGTC | 59.004 | 52.381 | 0.00 | 0.00 | 34.60 | 3.18 |
4382 | 6710 | 1.670087 | CGGATCACAGCTCTTCGTTGT | 60.670 | 52.381 | 0.00 | 0.00 | 37.57 | 3.32 |
4383 | 6711 | 0.994995 | CGGATCACAGCTCTTCGTTG | 59.005 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
4384 | 6712 | 0.888619 | TCGGATCACAGCTCTTCGTT | 59.111 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4385 | 6713 | 1.066303 | GATCGGATCACAGCTCTTCGT | 59.934 | 52.381 | 13.02 | 0.00 | 0.00 | 3.85 |
4386 | 6714 | 1.601663 | GGATCGGATCACAGCTCTTCG | 60.602 | 57.143 | 18.99 | 0.00 | 0.00 | 3.79 |
4387 | 6715 | 1.410517 | TGGATCGGATCACAGCTCTTC | 59.589 | 52.381 | 18.99 | 0.00 | 0.00 | 2.87 |
4388 | 6716 | 1.411977 | CTGGATCGGATCACAGCTCTT | 59.588 | 52.381 | 18.99 | 0.00 | 0.00 | 2.85 |
4419 | 6747 | 8.743714 | TCTGATATATGTATGCAAGGTAGTCAG | 58.256 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.