Multiple sequence alignment - TraesCS4B01G343300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G343300 chr4B 100.000 4805 0 0 1 4805 636985919 636981115 0.000000e+00 8874.0
1 TraesCS4B01G343300 chr4B 95.780 2014 74 5 2792 4805 636971878 636969876 0.000000e+00 3238.0
2 TraesCS4B01G343300 chr4B 96.482 199 7 0 1147 1345 181517992 181518190 3.590000e-86 329.0
3 TraesCS4B01G343300 chr4B 95.980 199 8 0 1147 1345 576189637 576189835 1.670000e-84 324.0
4 TraesCS4B01G343300 chr4B 95.477 199 9 0 1147 1345 181520910 181521108 7.760000e-83 318.0
5 TraesCS4B01G343300 chr4B 88.889 108 10 2 3050 3156 460330533 460330427 1.090000e-26 132.0
6 TraesCS4B01G343300 chr4B 88.889 108 11 1 3050 3156 600375811 600375704 1.090000e-26 132.0
7 TraesCS4B01G343300 chr4B 94.203 69 4 0 12 80 646647311 646647379 6.580000e-19 106.0
8 TraesCS4B01G343300 chr7A 89.084 1649 178 2 3158 4805 631977139 631975492 0.000000e+00 2047.0
9 TraesCS4B01G343300 chr7A 86.524 653 85 2 494 1146 631977895 631977246 0.000000e+00 715.0
10 TraesCS4B01G343300 chr7A 95.192 208 9 1 1139 1345 514822191 514821984 1.290000e-85 327.0
11 TraesCS4B01G343300 chr7A 94.304 158 6 3 2792 2947 398928271 398928115 6.220000e-59 239.0
12 TraesCS4B01G343300 chr7A 94.444 108 6 0 81 188 15772325 15772218 2.970000e-37 167.0
13 TraesCS4B01G343300 chr7A 94.444 108 6 0 81 188 15800450 15800343 2.970000e-37 167.0
14 TraesCS4B01G343300 chr7A 89.908 109 10 1 3049 3156 538102636 538102528 6.480000e-29 139.0
15 TraesCS4B01G343300 chr7A 97.143 70 2 0 11 80 691632756 691632687 8.450000e-23 119.0
16 TraesCS4B01G343300 chr7A 95.652 69 3 0 12 80 15772292 15772224 1.410000e-20 111.0
17 TraesCS4B01G343300 chr7A 95.652 69 3 0 12 80 15800417 15800349 1.410000e-20 111.0
18 TraesCS4B01G343300 chr7D 88.660 1649 185 2 3158 4805 548204242 548202595 0.000000e+00 2008.0
19 TraesCS4B01G343300 chr7D 89.942 686 34 13 2114 2792 108274059 108273402 0.000000e+00 852.0
20 TraesCS4B01G343300 chr7D 87.136 653 81 2 494 1146 548204998 548204349 0.000000e+00 737.0
21 TraesCS4B01G343300 chr2B 93.212 1370 74 14 1345 2708 25745140 25743784 0.000000e+00 1997.0
22 TraesCS4B01G343300 chr2B 93.244 1347 71 12 1344 2683 153141605 153142938 0.000000e+00 1965.0
23 TraesCS4B01G343300 chr2B 94.203 69 4 0 12 80 772206754 772206686 6.580000e-19 106.0
24 TraesCS4B01G343300 chr1B 91.736 1452 79 17 1345 2792 600305382 600306796 0.000000e+00 1978.0
25 TraesCS4B01G343300 chr1B 89.774 1457 90 29 1345 2791 470428723 470430130 0.000000e+00 1810.0
26 TraesCS4B01G343300 chr1B 90.165 1332 98 20 1339 2658 14571909 14573219 0.000000e+00 1703.0
27 TraesCS4B01G343300 chr1B 90.515 1223 53 14 1588 2794 615421582 615422757 0.000000e+00 1557.0
28 TraesCS4B01G343300 chr1B 91.865 1094 65 11 1716 2801 332460203 332461280 0.000000e+00 1506.0
29 TraesCS4B01G343300 chr1B 90.741 108 9 1 3050 3156 610352215 610352108 5.010000e-30 143.0
30 TraesCS4B01G343300 chr7B 88.107 1648 196 0 3158 4805 591390130 591388483 0.000000e+00 1958.0
31 TraesCS4B01G343300 chr7B 87.136 653 81 2 494 1146 591390886 591390237 0.000000e+00 737.0
32 TraesCS4B01G343300 chr7B 96.026 151 5 1 2792 2942 695922382 695922233 1.340000e-60 244.0
33 TraesCS4B01G343300 chr7B 94.393 107 6 0 81 187 695073192 695073298 1.070000e-36 165.0
34 TraesCS4B01G343300 chr7B 90.909 110 8 2 3049 3156 97198699 97198590 3.880000e-31 147.0
35 TraesCS4B01G343300 chrUn 91.033 1472 78 23 1344 2791 124597770 124596329 0.000000e+00 1938.0
36 TraesCS4B01G343300 chrUn 92.095 1050 41 12 1750 2791 77770501 77769486 0.000000e+00 1441.0
37 TraesCS4B01G343300 chrUn 85.680 831 68 16 1988 2792 41987987 41988792 0.000000e+00 828.0
38 TraesCS4B01G343300 chrUn 88.075 478 38 7 2317 2792 41989284 41989744 2.530000e-152 549.0
39 TraesCS4B01G343300 chrUn 88.075 478 36 9 2317 2792 41988809 41989267 9.090000e-152 547.0
40 TraesCS4B01G343300 chrUn 87.866 478 37 9 2317 2792 41989761 41990219 4.230000e-150 542.0
41 TraesCS4B01G343300 chrUn 87.657 478 37 9 2317 2792 41990236 41990693 1.970000e-148 536.0
42 TraesCS4B01G343300 chrUn 96.689 151 4 1 2792 2942 39708497 39708348 2.870000e-62 250.0
43 TraesCS4B01G343300 chrUn 95.333 150 6 1 2792 2941 39710568 39710420 2.240000e-58 237.0
44 TraesCS4B01G343300 chrUn 92.715 151 9 2 2792 2941 32960833 32960684 2.910000e-52 217.0
45 TraesCS4B01G343300 chrUn 98.630 73 0 1 2792 2864 26911120 26911191 1.400000e-25 128.0
46 TraesCS4B01G343300 chrUn 91.954 87 5 2 2856 2941 60486889 60486974 2.350000e-23 121.0
47 TraesCS4B01G343300 chrUn 94.805 77 3 1 2792 2868 26909077 26909152 8.450000e-23 119.0
48 TraesCS4B01G343300 chrUn 80.814 172 10 5 2623 2791 380456583 380456734 3.930000e-21 113.0
49 TraesCS4B01G343300 chrUn 80.814 172 10 5 2623 2791 380460123 380460274 3.930000e-21 113.0
50 TraesCS4B01G343300 chrUn 89.655 87 7 2 2856 2941 60489294 60489379 5.080000e-20 110.0
51 TraesCS4B01G343300 chrUn 83.333 114 17 2 3047 3158 25997010 25997123 2.370000e-18 104.0
52 TraesCS4B01G343300 chrUn 83.333 114 17 2 3047 3158 26108957 26109070 2.370000e-18 104.0
53 TraesCS4B01G343300 chrUn 83.333 114 17 2 3047 3158 183929915 183929802 2.370000e-18 104.0
54 TraesCS4B01G343300 chrUn 83.333 114 17 2 3047 3158 210968590 210968703 2.370000e-18 104.0
55 TraesCS4B01G343300 chrUn 83.333 114 17 2 3047 3158 253004759 253004872 2.370000e-18 104.0
56 TraesCS4B01G343300 chrUn 83.333 114 17 2 3047 3158 255745539 255745426 2.370000e-18 104.0
57 TraesCS4B01G343300 chrUn 83.333 114 17 2 3047 3158 318905145 318905032 2.370000e-18 104.0
58 TraesCS4B01G343300 chrUn 88.312 77 8 1 2803 2879 468244848 468244923 1.840000e-14 91.6
59 TraesCS4B01G343300 chrUn 95.455 44 2 0 2830 2873 32960770 32960727 2.400000e-08 71.3
60 TraesCS4B01G343300 chrUn 95.455 44 2 0 2830 2873 39708434 39708391 2.400000e-08 71.3
61 TraesCS4B01G343300 chrUn 95.455 44 2 0 2830 2873 39710505 39710462 2.400000e-08 71.3
62 TraesCS4B01G343300 chrUn 100.000 37 0 0 3120 3156 19246253 19246289 8.630000e-08 69.4
63 TraesCS4B01G343300 chr6B 92.358 1374 72 16 1345 2708 642140158 642141508 0.000000e+00 1925.0
64 TraesCS4B01G343300 chr6B 84.588 850 86 18 1970 2795 704633648 704634476 0.000000e+00 802.0
65 TraesCS4B01G343300 chr6B 83.777 826 75 27 1988 2791 19349080 19349868 0.000000e+00 728.0
66 TraesCS4B01G343300 chr6B 88.610 439 20 7 2360 2792 583353708 583354122 1.540000e-139 507.0
67 TraesCS4B01G343300 chr6B 89.815 108 10 1 3050 3156 520852322 520852429 2.330000e-28 137.0
68 TraesCS4B01G343300 chr3B 90.123 1458 110 20 1345 2797 592667088 592665660 0.000000e+00 1864.0
69 TraesCS4B01G343300 chr3B 95.980 199 7 1 1147 1345 254190901 254191098 6.000000e-84 322.0
70 TraesCS4B01G343300 chr3B 96.000 150 5 1 2792 2941 541526231 541526083 4.800000e-60 243.0
71 TraesCS4B01G343300 chr3B 94.268 157 6 3 2792 2948 541524183 541524030 2.240000e-58 237.0
72 TraesCS4B01G343300 chr6A 90.743 1372 104 20 1344 2707 35228631 35229987 0.000000e+00 1808.0
73 TraesCS4B01G343300 chr6A 89.118 1452 107 30 1345 2791 598786860 598788265 0.000000e+00 1759.0
74 TraesCS4B01G343300 chr6A 87.423 1455 112 31 1345 2791 571655262 571653871 0.000000e+00 1607.0
75 TraesCS4B01G343300 chr6A 90.909 1210 76 15 1344 2545 457611439 457612622 0.000000e+00 1594.0
76 TraesCS4B01G343300 chr6A 89.757 1191 86 18 1345 2517 73935620 73934448 0.000000e+00 1491.0
77 TraesCS4B01G343300 chr6A 89.901 1010 72 13 1345 2327 448644363 448645369 0.000000e+00 1273.0
78 TraesCS4B01G343300 chr6A 91.068 571 39 8 1345 1913 221499990 221499430 0.000000e+00 761.0
79 TraesCS4B01G343300 chr6A 89.385 537 46 6 1345 1872 602703055 602703589 0.000000e+00 665.0
80 TraesCS4B01G343300 chr6A 88.867 503 44 5 1345 1846 226097960 226098451 4.110000e-170 608.0
81 TraesCS4B01G343300 chr6A 95.477 199 9 0 1147 1345 252856323 252856125 7.760000e-83 318.0
82 TraesCS4B01G343300 chr6A 94.737 152 6 2 2792 2942 520839229 520839079 8.040000e-58 235.0
83 TraesCS4B01G343300 chr1A 89.886 1315 111 13 1402 2708 424589309 424588009 0.000000e+00 1672.0
84 TraesCS4B01G343300 chr1A 88.206 1399 91 33 1345 2708 30545271 30546630 0.000000e+00 1602.0
85 TraesCS4B01G343300 chr1A 88.117 1397 102 20 1339 2708 34595253 34596612 0.000000e+00 1602.0
86 TraesCS4B01G343300 chr1A 95.364 151 5 2 2792 2941 423920535 423920386 6.220000e-59 239.0
87 TraesCS4B01G343300 chr1A 94.393 107 6 0 81 187 47814985 47814879 1.070000e-36 165.0
88 TraesCS4B01G343300 chr1A 89.815 108 10 1 3050 3156 586723905 586723798 2.330000e-28 137.0
89 TraesCS4B01G343300 chr1A 88.889 108 11 1 3050 3156 427816356 427816463 1.090000e-26 132.0
90 TraesCS4B01G343300 chr1A 95.652 46 2 0 494 539 558091861 558091906 1.850000e-09 75.0
91 TraesCS4B01G343300 chr5D 91.590 1082 53 13 1715 2791 17149766 17150814 0.000000e+00 1459.0
92 TraesCS4B01G343300 chr5D 95.395 152 5 2 2792 2942 323024867 323025017 1.730000e-59 241.0
93 TraesCS4B01G343300 chr5D 94.839 155 5 3 2792 2945 443496293 443496141 6.220000e-59 239.0
94 TraesCS4B01G343300 chr5D 93.458 107 7 0 81 187 2748979 2749085 4.980000e-35 159.0
95 TraesCS4B01G343300 chr5D 94.203 69 4 0 12 80 411723477 411723409 6.580000e-19 106.0
96 TraesCS4B01G343300 chr3D 88.126 1238 72 18 1345 2561 2304473 2305656 0.000000e+00 1402.0
97 TraesCS4B01G343300 chr3D 90.315 444 36 3 1345 1788 607246330 607245894 4.170000e-160 575.0
98 TraesCS4B01G343300 chr3D 88.393 448 42 5 1345 1791 569340698 569341136 9.160000e-147 531.0
99 TraesCS4B01G343300 chr3D 94.839 155 6 2 2792 2945 134501757 134501910 1.730000e-59 241.0
100 TraesCS4B01G343300 chr3D 95.364 151 5 2 2792 2941 134499469 134499618 6.220000e-59 239.0
101 TraesCS4B01G343300 chr3D 87.156 109 13 1 3050 3157 294046115 294046223 6.530000e-24 122.0
102 TraesCS4B01G343300 chr1D 88.281 1024 57 15 1772 2791 25013759 25012795 0.000000e+00 1168.0
103 TraesCS4B01G343300 chr1D 95.364 151 5 2 2792 2941 108260552 108260403 6.220000e-59 239.0
104 TraesCS4B01G343300 chr1D 95.364 151 5 2 2792 2941 143600907 143601056 6.220000e-59 239.0
105 TraesCS4B01G343300 chr1D 95.364 151 5 2 2792 2941 326148119 326148268 6.220000e-59 239.0
106 TraesCS4B01G343300 chr1D 94.702 151 6 2 2792 2941 31327148 31326999 2.890000e-57 233.0
107 TraesCS4B01G343300 chr1D 94.702 151 6 2 2792 2941 143598778 143598927 2.890000e-57 233.0
108 TraesCS4B01G343300 chr1D 93.519 108 7 0 81 188 207230546 207230439 1.380000e-35 161.0
109 TraesCS4B01G343300 chr1D 88.991 109 10 2 3050 3156 447518259 447518151 3.020000e-27 134.0
110 TraesCS4B01G343300 chr1D 88.991 109 10 2 3050 3156 447518396 447518288 3.020000e-27 134.0
111 TraesCS4B01G343300 chr1D 88.393 112 10 3 3050 3159 3303378 3303488 1.090000e-26 132.0
112 TraesCS4B01G343300 chr1D 86.486 111 11 3 3050 3157 307407488 307407597 8.450000e-23 119.0
113 TraesCS4B01G343300 chr1D 95.652 69 3 0 12 80 475700184 475700116 1.410000e-20 111.0
114 TraesCS4B01G343300 chr1D 85.185 108 15 1 3050 3156 441207357 441207464 5.080000e-20 110.0
115 TraesCS4B01G343300 chr4D 88.889 747 33 14 2059 2791 273748894 273748184 0.000000e+00 874.0
116 TraesCS4B01G343300 chr4D 94.702 151 6 2 2792 2941 301752902 301752753 2.890000e-57 233.0
117 TraesCS4B01G343300 chr4D 94.040 151 7 2 2792 2941 34601835 34601686 1.350000e-55 228.0
118 TraesCS4B01G343300 chr4D 94.040 151 7 2 2792 2941 43650562 43650413 1.350000e-55 228.0
119 TraesCS4B01G343300 chr4D 94.040 151 7 2 2792 2941 432424340 432424191 1.350000e-55 228.0
120 TraesCS4B01G343300 chr4D 94.040 151 6 3 2792 2941 432422095 432421947 4.840000e-55 226.0
121 TraesCS4B01G343300 chr4D 93.377 151 8 2 2792 2941 15597406 15597555 6.260000e-54 222.0
122 TraesCS4B01G343300 chr4D 93.289 149 8 2 2794 2941 81334844 81334697 8.100000e-53 219.0
123 TraesCS4B01G343300 chr4D 78.571 112 23 1 3050 3160 93689545 93689434 6.670000e-09 73.1
124 TraesCS4B01G343300 chr4A 85.333 825 77 16 1996 2796 663786141 663786945 0.000000e+00 813.0
125 TraesCS4B01G343300 chr4A 96.482 199 7 0 1147 1345 242890036 242890234 3.590000e-86 329.0
126 TraesCS4B01G343300 chr4A 95.980 199 8 0 1147 1345 703240180 703239982 1.670000e-84 324.0
127 TraesCS4B01G343300 chr5B 96.020 201 8 0 1145 1345 601352198 601351998 1.290000e-85 327.0
128 TraesCS4B01G343300 chr5B 94.444 108 5 1 3050 3156 115399226 115399119 1.070000e-36 165.0
129 TraesCS4B01G343300 chr5A 96.026 151 4 2 2792 2941 638757644 638757495 1.340000e-60 244.0
130 TraesCS4B01G343300 chr5A 94.268 157 6 3 2790 2945 616402763 616402917 2.240000e-58 237.0
131 TraesCS4B01G343300 chr5A 93.519 108 6 1 81 188 536390075 536390181 4.980000e-35 159.0
132 TraesCS4B01G343300 chr5A 91.071 112 9 1 3049 3159 438417753 438417864 3.000000e-32 150.0
133 TraesCS4B01G343300 chr5A 89.815 108 10 1 3050 3156 512233469 512233576 2.330000e-28 137.0
134 TraesCS4B01G343300 chr5A 89.189 111 11 1 3050 3159 537119785 537119675 2.330000e-28 137.0
135 TraesCS4B01G343300 chr5A 97.059 68 2 0 12 79 260411095 260411028 1.090000e-21 115.0
136 TraesCS4B01G343300 chr6D 94.702 151 6 2 2792 2941 76000210 76000061 2.890000e-57 233.0
137 TraesCS4B01G343300 chr6D 94.079 152 7 2 2792 2942 9764633 9764483 3.740000e-56 230.0
138 TraesCS4B01G343300 chr6D 94.040 151 7 2 2792 2941 138812475 138812326 1.350000e-55 228.0
139 TraesCS4B01G343300 chr6D 91.304 115 9 1 81 194 310519645 310519759 6.440000e-34 156.0
140 TraesCS4B01G343300 chr6D 90.741 108 9 1 3050 3156 79857211 79857104 5.010000e-30 143.0
141 TraesCS4B01G343300 chr6D 95.890 73 3 0 2719 2791 315990580 315990652 8.450000e-23 119.0
142 TraesCS4B01G343300 chr6D 86.667 105 14 0 3049 3153 269705650 269705754 3.040000e-22 117.0
143 TraesCS4B01G343300 chr3A 92.727 110 8 0 81 190 497712575 497712466 4.980000e-35 159.0
144 TraesCS4B01G343300 chr3A 90.826 109 9 1 3050 3157 54475096 54474988 1.390000e-30 145.0
145 TraesCS4B01G343300 chr2D 94.203 69 4 0 12 80 229640216 229640148 6.580000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G343300 chr4B 636981115 636985919 4804 True 8874.0 8874 100.0000 1 4805 1 chr4B.!!$R4 4804
1 TraesCS4B01G343300 chr4B 636969876 636971878 2002 True 3238.0 3238 95.7800 2792 4805 1 chr4B.!!$R3 2013
2 TraesCS4B01G343300 chr4B 181517992 181521108 3116 False 323.5 329 95.9795 1147 1345 2 chr4B.!!$F3 198
3 TraesCS4B01G343300 chr7A 631975492 631977895 2403 True 1381.0 2047 87.8040 494 4805 2 chr7A.!!$R7 4311
4 TraesCS4B01G343300 chr7D 548202595 548204998 2403 True 1372.5 2008 87.8980 494 4805 2 chr7D.!!$R2 4311
5 TraesCS4B01G343300 chr7D 108273402 108274059 657 True 852.0 852 89.9420 2114 2792 1 chr7D.!!$R1 678
6 TraesCS4B01G343300 chr2B 25743784 25745140 1356 True 1997.0 1997 93.2120 1345 2708 1 chr2B.!!$R1 1363
7 TraesCS4B01G343300 chr2B 153141605 153142938 1333 False 1965.0 1965 93.2440 1344 2683 1 chr2B.!!$F1 1339
8 TraesCS4B01G343300 chr1B 600305382 600306796 1414 False 1978.0 1978 91.7360 1345 2792 1 chr1B.!!$F4 1447
9 TraesCS4B01G343300 chr1B 470428723 470430130 1407 False 1810.0 1810 89.7740 1345 2791 1 chr1B.!!$F3 1446
10 TraesCS4B01G343300 chr1B 14571909 14573219 1310 False 1703.0 1703 90.1650 1339 2658 1 chr1B.!!$F1 1319
11 TraesCS4B01G343300 chr1B 615421582 615422757 1175 False 1557.0 1557 90.5150 1588 2794 1 chr1B.!!$F5 1206
12 TraesCS4B01G343300 chr1B 332460203 332461280 1077 False 1506.0 1506 91.8650 1716 2801 1 chr1B.!!$F2 1085
13 TraesCS4B01G343300 chr7B 591388483 591390886 2403 True 1347.5 1958 87.6215 494 4805 2 chr7B.!!$R3 4311
14 TraesCS4B01G343300 chrUn 124596329 124597770 1441 True 1938.0 1938 91.0330 1344 2791 1 chrUn.!!$R2 1447
15 TraesCS4B01G343300 chrUn 77769486 77770501 1015 True 1441.0 1441 92.0950 1750 2791 1 chrUn.!!$R1 1041
16 TraesCS4B01G343300 chrUn 41987987 41990693 2706 False 600.4 828 87.4706 1988 2792 5 chrUn.!!$F8 804
17 TraesCS4B01G343300 chr6B 642140158 642141508 1350 False 1925.0 1925 92.3580 1345 2708 1 chr6B.!!$F4 1363
18 TraesCS4B01G343300 chr6B 704633648 704634476 828 False 802.0 802 84.5880 1970 2795 1 chr6B.!!$F5 825
19 TraesCS4B01G343300 chr6B 19349080 19349868 788 False 728.0 728 83.7770 1988 2791 1 chr6B.!!$F1 803
20 TraesCS4B01G343300 chr3B 592665660 592667088 1428 True 1864.0 1864 90.1230 1345 2797 1 chr3B.!!$R1 1452
21 TraesCS4B01G343300 chr3B 541524030 541526231 2201 True 240.0 243 95.1340 2792 2948 2 chr3B.!!$R2 156
22 TraesCS4B01G343300 chr6A 35228631 35229987 1356 False 1808.0 1808 90.7430 1344 2707 1 chr6A.!!$F1 1363
23 TraesCS4B01G343300 chr6A 598786860 598788265 1405 False 1759.0 1759 89.1180 1345 2791 1 chr6A.!!$F5 1446
24 TraesCS4B01G343300 chr6A 571653871 571655262 1391 True 1607.0 1607 87.4230 1345 2791 1 chr6A.!!$R5 1446
25 TraesCS4B01G343300 chr6A 457611439 457612622 1183 False 1594.0 1594 90.9090 1344 2545 1 chr6A.!!$F4 1201
26 TraesCS4B01G343300 chr6A 73934448 73935620 1172 True 1491.0 1491 89.7570 1345 2517 1 chr6A.!!$R1 1172
27 TraesCS4B01G343300 chr6A 448644363 448645369 1006 False 1273.0 1273 89.9010 1345 2327 1 chr6A.!!$F3 982
28 TraesCS4B01G343300 chr6A 221499430 221499990 560 True 761.0 761 91.0680 1345 1913 1 chr6A.!!$R2 568
29 TraesCS4B01G343300 chr6A 602703055 602703589 534 False 665.0 665 89.3850 1345 1872 1 chr6A.!!$F6 527
30 TraesCS4B01G343300 chr1A 424588009 424589309 1300 True 1672.0 1672 89.8860 1402 2708 1 chr1A.!!$R3 1306
31 TraesCS4B01G343300 chr1A 30545271 30546630 1359 False 1602.0 1602 88.2060 1345 2708 1 chr1A.!!$F1 1363
32 TraesCS4B01G343300 chr1A 34595253 34596612 1359 False 1602.0 1602 88.1170 1339 2708 1 chr1A.!!$F2 1369
33 TraesCS4B01G343300 chr5D 17149766 17150814 1048 False 1459.0 1459 91.5900 1715 2791 1 chr5D.!!$F2 1076
34 TraesCS4B01G343300 chr3D 2304473 2305656 1183 False 1402.0 1402 88.1260 1345 2561 1 chr3D.!!$F1 1216
35 TraesCS4B01G343300 chr3D 134499469 134501910 2441 False 240.0 241 95.1015 2792 2945 2 chr3D.!!$F4 153
36 TraesCS4B01G343300 chr1D 25012795 25013759 964 True 1168.0 1168 88.2810 1772 2791 1 chr1D.!!$R1 1019
37 TraesCS4B01G343300 chr1D 143598778 143601056 2278 False 236.0 239 95.0330 2792 2941 2 chr1D.!!$F5 149
38 TraesCS4B01G343300 chr4D 273748184 273748894 710 True 874.0 874 88.8890 2059 2791 1 chr4D.!!$R5 732
39 TraesCS4B01G343300 chr4D 432421947 432424340 2393 True 227.0 228 94.0400 2792 2941 2 chr4D.!!$R7 149
40 TraesCS4B01G343300 chr4A 663786141 663786945 804 False 813.0 813 85.3330 1996 2796 1 chr4A.!!$F2 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 467 0.030603 GAGAGGAGGGAGTGGGGAAT 60.031 60.0 0.00 0.00 0.00 3.01 F
478 479 0.034863 TGGGGAATTGGAACGTAGGC 60.035 55.0 0.00 0.00 0.00 3.93 F
1094 1095 0.250727 TGTGTAAGGGAGGCACTTGC 60.251 55.0 0.00 0.00 41.55 4.01 F
2714 3419 0.038310 ACTCTTTAGTGCCAAGGCCC 59.962 55.0 8.89 0.00 41.09 5.80 F
3287 7541 0.256752 TTGATCCATGGCCTCTGTGG 59.743 55.0 6.96 7.51 39.35 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1556 0.387202 CCGGTTTTGTGCCATGAACA 59.613 50.0 0.00 0.0 0.00 3.18 R
1702 1717 0.462937 TGAAATGGCGATACACCGGG 60.463 55.0 6.32 0.0 0.00 5.73 R
2727 3432 0.950555 TAGTGCCAGTTCTGCAAGCG 60.951 55.0 0.00 0.0 41.06 4.68 R
3604 7858 1.247567 AGTGCAAAATCCACCTTCCG 58.752 50.0 0.00 0.0 33.75 4.30 R
4680 8934 1.827681 TAATACGGCTGGCTTTGCAA 58.172 45.0 0.00 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.158169 TGACTGCATTATTGAATTCATACTCC 57.842 34.615 9.40 0.00 0.00 3.85
28 29 7.774625 TGACTGCATTATTGAATTCATACTCCA 59.225 33.333 9.40 2.51 0.00 3.86
29 30 8.523915 ACTGCATTATTGAATTCATACTCCAA 57.476 30.769 9.40 0.00 0.00 3.53
30 31 8.408601 ACTGCATTATTGAATTCATACTCCAAC 58.591 33.333 9.40 0.00 0.00 3.77
31 32 7.715657 TGCATTATTGAATTCATACTCCAACC 58.284 34.615 9.40 0.00 0.00 3.77
32 33 7.341512 TGCATTATTGAATTCATACTCCAACCA 59.658 33.333 9.40 0.00 0.00 3.67
33 34 8.196771 GCATTATTGAATTCATACTCCAACCAA 58.803 33.333 9.40 0.00 0.00 3.67
34 35 9.520204 CATTATTGAATTCATACTCCAACCAAC 57.480 33.333 9.40 0.00 0.00 3.77
35 36 8.877864 TTATTGAATTCATACTCCAACCAACT 57.122 30.769 9.40 0.00 0.00 3.16
36 37 6.817765 TTGAATTCATACTCCAACCAACTC 57.182 37.500 9.40 0.00 0.00 3.01
37 38 5.875224 TGAATTCATACTCCAACCAACTCA 58.125 37.500 3.38 0.00 0.00 3.41
38 39 6.484288 TGAATTCATACTCCAACCAACTCAT 58.516 36.000 3.38 0.00 0.00 2.90
39 40 6.599244 TGAATTCATACTCCAACCAACTCATC 59.401 38.462 3.38 0.00 0.00 2.92
40 41 4.487714 TCATACTCCAACCAACTCATCC 57.512 45.455 0.00 0.00 0.00 3.51
41 42 3.843619 TCATACTCCAACCAACTCATCCA 59.156 43.478 0.00 0.00 0.00 3.41
42 43 4.288366 TCATACTCCAACCAACTCATCCAA 59.712 41.667 0.00 0.00 0.00 3.53
43 44 3.593442 ACTCCAACCAACTCATCCAAA 57.407 42.857 0.00 0.00 0.00 3.28
44 45 3.909732 ACTCCAACCAACTCATCCAAAA 58.090 40.909 0.00 0.00 0.00 2.44
45 46 3.891366 ACTCCAACCAACTCATCCAAAAG 59.109 43.478 0.00 0.00 0.00 2.27
46 47 3.891366 CTCCAACCAACTCATCCAAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
47 48 3.888930 TCCAACCAACTCATCCAAAAGTC 59.111 43.478 0.00 0.00 0.00 3.01
48 49 3.005791 CCAACCAACTCATCCAAAAGTCC 59.994 47.826 0.00 0.00 0.00 3.85
49 50 3.593442 ACCAACTCATCCAAAAGTCCA 57.407 42.857 0.00 0.00 0.00 4.02
50 51 3.909732 ACCAACTCATCCAAAAGTCCAA 58.090 40.909 0.00 0.00 0.00 3.53
51 52 4.285863 ACCAACTCATCCAAAAGTCCAAA 58.714 39.130 0.00 0.00 0.00 3.28
52 53 4.099419 ACCAACTCATCCAAAAGTCCAAAC 59.901 41.667 0.00 0.00 0.00 2.93
53 54 4.342092 CCAACTCATCCAAAAGTCCAAACT 59.658 41.667 0.00 0.00 37.32 2.66
54 55 5.284079 CAACTCATCCAAAAGTCCAAACTG 58.716 41.667 0.00 0.00 35.36 3.16
55 56 4.792068 ACTCATCCAAAAGTCCAAACTGA 58.208 39.130 0.00 0.00 35.36 3.41
56 57 5.388654 ACTCATCCAAAAGTCCAAACTGAT 58.611 37.500 0.00 0.00 35.36 2.90
57 58 5.242393 ACTCATCCAAAAGTCCAAACTGATG 59.758 40.000 0.00 0.00 35.25 3.07
58 59 4.523943 TCATCCAAAAGTCCAAACTGATGG 59.476 41.667 0.00 4.37 40.74 3.51
59 60 4.523943 CATCCAAAAGTCCAAACTGATGGA 59.476 41.667 12.33 12.33 46.68 3.41
65 66 1.289160 TCCAAACTGATGGAGGGAGG 58.711 55.000 3.42 0.00 44.52 4.30
66 67 0.394899 CCAAACTGATGGAGGGAGGC 60.395 60.000 0.00 0.00 43.54 4.70
67 68 0.329261 CAAACTGATGGAGGGAGGCA 59.671 55.000 0.00 0.00 0.00 4.75
68 69 0.622665 AAACTGATGGAGGGAGGCAG 59.377 55.000 0.00 0.00 0.00 4.85
69 70 1.277580 AACTGATGGAGGGAGGCAGG 61.278 60.000 0.00 0.00 0.00 4.85
70 71 3.092511 TGATGGAGGGAGGCAGGC 61.093 66.667 0.00 0.00 0.00 4.85
71 72 3.092511 GATGGAGGGAGGCAGGCA 61.093 66.667 0.00 0.00 0.00 4.75
72 73 2.614969 ATGGAGGGAGGCAGGCAA 60.615 61.111 0.00 0.00 0.00 4.52
73 74 2.004408 GATGGAGGGAGGCAGGCAAT 62.004 60.000 0.00 0.00 0.00 3.56
74 75 0.698886 ATGGAGGGAGGCAGGCAATA 60.699 55.000 0.00 0.00 0.00 1.90
75 76 0.698886 TGGAGGGAGGCAGGCAATAT 60.699 55.000 0.00 0.00 0.00 1.28
76 77 1.362224 GGAGGGAGGCAGGCAATATA 58.638 55.000 0.00 0.00 0.00 0.86
77 78 1.918957 GGAGGGAGGCAGGCAATATAT 59.081 52.381 0.00 0.00 0.00 0.86
78 79 2.310052 GGAGGGAGGCAGGCAATATATT 59.690 50.000 0.00 0.00 0.00 1.28
79 80 3.245407 GGAGGGAGGCAGGCAATATATTT 60.245 47.826 0.00 0.00 0.00 1.40
80 81 4.411013 GAGGGAGGCAGGCAATATATTTT 58.589 43.478 0.00 0.00 0.00 1.82
81 82 4.411013 AGGGAGGCAGGCAATATATTTTC 58.589 43.478 0.00 0.00 0.00 2.29
82 83 4.106987 AGGGAGGCAGGCAATATATTTTCT 59.893 41.667 0.00 0.00 0.00 2.52
83 84 4.835056 GGGAGGCAGGCAATATATTTTCTT 59.165 41.667 0.00 0.00 0.00 2.52
84 85 5.279156 GGGAGGCAGGCAATATATTTTCTTG 60.279 44.000 0.00 0.00 0.00 3.02
85 86 5.536161 GGAGGCAGGCAATATATTTTCTTGA 59.464 40.000 0.00 0.00 0.00 3.02
86 87 6.040842 GGAGGCAGGCAATATATTTTCTTGAA 59.959 38.462 0.00 0.00 0.00 2.69
87 88 6.809869 AGGCAGGCAATATATTTTCTTGAAC 58.190 36.000 0.00 0.00 0.00 3.18
88 89 6.608808 AGGCAGGCAATATATTTTCTTGAACT 59.391 34.615 0.00 0.00 0.00 3.01
89 90 6.920210 GGCAGGCAATATATTTTCTTGAACTC 59.080 38.462 0.00 0.00 0.00 3.01
90 91 7.416664 GGCAGGCAATATATTTTCTTGAACTCA 60.417 37.037 0.00 0.00 0.00 3.41
91 92 7.975616 GCAGGCAATATATTTTCTTGAACTCAA 59.024 33.333 0.00 0.00 0.00 3.02
111 112 2.243810 AGATCTCTTGGCTCGGATACC 58.756 52.381 0.00 0.00 0.00 2.73
112 113 1.964223 GATCTCTTGGCTCGGATACCA 59.036 52.381 0.00 0.00 0.00 3.25
113 114 2.088104 TCTCTTGGCTCGGATACCAT 57.912 50.000 1.20 0.00 35.42 3.55
114 115 3.238788 TCTCTTGGCTCGGATACCATA 57.761 47.619 1.20 0.00 35.42 2.74
115 116 3.779444 TCTCTTGGCTCGGATACCATAT 58.221 45.455 1.20 0.00 35.42 1.78
116 117 4.160329 TCTCTTGGCTCGGATACCATATT 58.840 43.478 1.20 0.00 35.42 1.28
117 118 4.021104 TCTCTTGGCTCGGATACCATATTG 60.021 45.833 1.20 0.00 35.42 1.90
118 119 3.901222 TCTTGGCTCGGATACCATATTGA 59.099 43.478 1.20 0.00 35.42 2.57
119 120 4.346709 TCTTGGCTCGGATACCATATTGAA 59.653 41.667 1.20 0.00 35.42 2.69
120 121 4.908601 TGGCTCGGATACCATATTGAAT 57.091 40.909 0.00 0.00 0.00 2.57
121 122 5.241403 TGGCTCGGATACCATATTGAATT 57.759 39.130 0.00 0.00 0.00 2.17
122 123 5.245531 TGGCTCGGATACCATATTGAATTC 58.754 41.667 0.00 0.00 0.00 2.17
123 124 5.221823 TGGCTCGGATACCATATTGAATTCA 60.222 40.000 3.38 3.38 0.00 2.57
124 125 5.882557 GGCTCGGATACCATATTGAATTCAT 59.117 40.000 9.40 2.50 0.00 2.57
125 126 6.183360 GGCTCGGATACCATATTGAATTCATG 60.183 42.308 9.40 4.74 0.00 3.07
126 127 6.676456 GCTCGGATACCATATTGAATTCATGC 60.676 42.308 9.40 0.00 0.00 4.06
127 128 6.237154 TCGGATACCATATTGAATTCATGCA 58.763 36.000 9.40 0.00 0.00 3.96
128 129 6.372381 TCGGATACCATATTGAATTCATGCAG 59.628 38.462 9.40 0.51 0.00 4.41
129 130 6.327934 GGATACCATATTGAATTCATGCAGC 58.672 40.000 9.40 0.00 0.00 5.25
130 131 6.071784 GGATACCATATTGAATTCATGCAGCA 60.072 38.462 9.40 0.00 0.00 4.41
131 132 5.196341 ACCATATTGAATTCATGCAGCAG 57.804 39.130 9.40 0.00 0.00 4.24
132 133 3.987868 CCATATTGAATTCATGCAGCAGC 59.012 43.478 9.40 0.00 42.57 5.25
133 134 2.596904 ATTGAATTCATGCAGCAGCC 57.403 45.000 9.40 0.00 41.13 4.85
134 135 1.258676 TTGAATTCATGCAGCAGCCA 58.741 45.000 9.40 0.00 41.13 4.75
135 136 1.258676 TGAATTCATGCAGCAGCCAA 58.741 45.000 3.38 0.00 41.13 4.52
136 137 1.067425 TGAATTCATGCAGCAGCCAAC 60.067 47.619 3.38 0.00 41.13 3.77
137 138 1.203994 GAATTCATGCAGCAGCCAACT 59.796 47.619 0.00 0.00 41.13 3.16
138 139 0.815734 ATTCATGCAGCAGCCAACTC 59.184 50.000 0.00 0.00 41.13 3.01
139 140 0.537828 TTCATGCAGCAGCCAACTCA 60.538 50.000 0.00 0.00 41.13 3.41
140 141 0.323087 TCATGCAGCAGCCAACTCAT 60.323 50.000 0.00 0.00 41.13 2.90
141 142 0.100682 CATGCAGCAGCCAACTCATC 59.899 55.000 0.00 0.00 41.13 2.92
142 143 1.035932 ATGCAGCAGCCAACTCATCC 61.036 55.000 0.00 0.00 41.13 3.51
143 144 1.676635 GCAGCAGCCAACTCATCCA 60.677 57.895 0.00 0.00 33.58 3.41
144 145 1.246056 GCAGCAGCCAACTCATCCAA 61.246 55.000 0.00 0.00 33.58 3.53
145 146 1.250328 CAGCAGCCAACTCATCCAAA 58.750 50.000 0.00 0.00 0.00 3.28
146 147 1.614903 CAGCAGCCAACTCATCCAAAA 59.385 47.619 0.00 0.00 0.00 2.44
147 148 2.036217 CAGCAGCCAACTCATCCAAAAA 59.964 45.455 0.00 0.00 0.00 1.94
148 149 2.901839 AGCAGCCAACTCATCCAAAAAT 59.098 40.909 0.00 0.00 0.00 1.82
149 150 3.056322 AGCAGCCAACTCATCCAAAAATC 60.056 43.478 0.00 0.00 0.00 2.17
150 151 3.853475 CAGCCAACTCATCCAAAAATCC 58.147 45.455 0.00 0.00 0.00 3.01
151 152 2.493278 AGCCAACTCATCCAAAAATCCG 59.507 45.455 0.00 0.00 0.00 4.18
152 153 2.491693 GCCAACTCATCCAAAAATCCGA 59.508 45.455 0.00 0.00 0.00 4.55
153 154 3.056891 GCCAACTCATCCAAAAATCCGAA 60.057 43.478 0.00 0.00 0.00 4.30
154 155 4.485163 CCAACTCATCCAAAAATCCGAAC 58.515 43.478 0.00 0.00 0.00 3.95
155 156 4.218417 CCAACTCATCCAAAAATCCGAACT 59.782 41.667 0.00 0.00 0.00 3.01
156 157 5.156355 CAACTCATCCAAAAATCCGAACTG 58.844 41.667 0.00 0.00 0.00 3.16
157 158 4.651778 ACTCATCCAAAAATCCGAACTGA 58.348 39.130 0.00 0.00 0.00 3.41
158 159 5.256474 ACTCATCCAAAAATCCGAACTGAT 58.744 37.500 0.00 0.00 0.00 2.90
159 160 5.355350 ACTCATCCAAAAATCCGAACTGATC 59.645 40.000 0.00 0.00 0.00 2.92
175 176 4.040645 TCGAGAGAGGCAGGCAAT 57.959 55.556 0.00 0.00 34.84 3.56
176 177 3.207452 TCGAGAGAGGCAGGCAATA 57.793 52.632 0.00 0.00 34.84 1.90
177 178 1.709578 TCGAGAGAGGCAGGCAATAT 58.290 50.000 0.00 0.00 34.84 1.28
178 179 2.876581 TCGAGAGAGGCAGGCAATATA 58.123 47.619 0.00 0.00 34.84 0.86
179 180 3.435275 TCGAGAGAGGCAGGCAATATAT 58.565 45.455 0.00 0.00 34.84 0.86
180 181 3.834813 TCGAGAGAGGCAGGCAATATATT 59.165 43.478 0.00 0.00 34.84 1.28
181 182 4.284490 TCGAGAGAGGCAGGCAATATATTT 59.716 41.667 0.00 0.00 34.84 1.40
182 183 4.629200 CGAGAGAGGCAGGCAATATATTTC 59.371 45.833 0.00 0.00 0.00 2.17
183 184 5.555017 GAGAGAGGCAGGCAATATATTTCA 58.445 41.667 0.00 0.00 0.00 2.69
184 185 5.945310 AGAGAGGCAGGCAATATATTTCAA 58.055 37.500 0.00 0.00 0.00 2.69
185 186 5.767168 AGAGAGGCAGGCAATATATTTCAAC 59.233 40.000 0.00 0.00 0.00 3.18
186 187 5.448654 AGAGGCAGGCAATATATTTCAACA 58.551 37.500 0.00 0.00 0.00 3.33
187 188 5.533903 AGAGGCAGGCAATATATTTCAACAG 59.466 40.000 0.00 0.00 0.00 3.16
188 189 5.448654 AGGCAGGCAATATATTTCAACAGA 58.551 37.500 0.00 0.00 0.00 3.41
189 190 5.893255 AGGCAGGCAATATATTTCAACAGAA 59.107 36.000 0.00 0.00 0.00 3.02
190 191 6.040166 AGGCAGGCAATATATTTCAACAGAAG 59.960 38.462 0.00 0.00 0.00 2.85
191 192 6.183360 GGCAGGCAATATATTTCAACAGAAGT 60.183 38.462 0.00 0.00 0.00 3.01
192 193 7.013274 GGCAGGCAATATATTTCAACAGAAGTA 59.987 37.037 0.00 0.00 0.00 2.24
193 194 8.405531 GCAGGCAATATATTTCAACAGAAGTAA 58.594 33.333 0.00 0.00 0.00 2.24
194 195 9.722056 CAGGCAATATATTTCAACAGAAGTAAC 57.278 33.333 0.00 0.00 0.00 2.50
195 196 8.612619 AGGCAATATATTTCAACAGAAGTAACG 58.387 33.333 0.00 0.00 0.00 3.18
196 197 8.609176 GGCAATATATTTCAACAGAAGTAACGA 58.391 33.333 0.00 0.00 0.00 3.85
203 204 4.862350 TCAACAGAAGTAACGATTGACGA 58.138 39.130 0.00 0.00 45.77 4.20
204 205 5.466819 TCAACAGAAGTAACGATTGACGAT 58.533 37.500 0.00 0.00 45.77 3.73
205 206 5.344933 TCAACAGAAGTAACGATTGACGATG 59.655 40.000 0.00 0.00 45.77 3.84
206 207 5.055642 ACAGAAGTAACGATTGACGATGA 57.944 39.130 0.00 0.00 45.77 2.92
207 208 5.096169 ACAGAAGTAACGATTGACGATGAG 58.904 41.667 0.00 0.00 45.77 2.90
208 209 5.106277 ACAGAAGTAACGATTGACGATGAGA 60.106 40.000 0.00 0.00 45.77 3.27
209 210 5.228220 CAGAAGTAACGATTGACGATGAGAC 59.772 44.000 0.00 0.00 45.77 3.36
210 211 3.681855 AGTAACGATTGACGATGAGACG 58.318 45.455 0.00 0.00 45.77 4.18
211 212 1.909376 AACGATTGACGATGAGACGG 58.091 50.000 0.00 0.00 45.77 4.79
212 213 0.809385 ACGATTGACGATGAGACGGT 59.191 50.000 0.00 0.00 45.77 4.83
213 214 1.191944 CGATTGACGATGAGACGGTG 58.808 55.000 0.00 0.00 45.77 4.94
214 215 1.560923 GATTGACGATGAGACGGTGG 58.439 55.000 0.00 0.00 37.61 4.61
215 216 1.134367 GATTGACGATGAGACGGTGGA 59.866 52.381 0.00 0.00 37.61 4.02
216 217 1.182667 TTGACGATGAGACGGTGGAT 58.817 50.000 0.00 0.00 37.61 3.41
217 218 0.455815 TGACGATGAGACGGTGGATG 59.544 55.000 0.00 0.00 37.61 3.51
218 219 0.872021 GACGATGAGACGGTGGATGC 60.872 60.000 0.00 0.00 37.61 3.91
219 220 1.323271 ACGATGAGACGGTGGATGCT 61.323 55.000 0.00 0.00 37.61 3.79
220 221 0.873312 CGATGAGACGGTGGATGCTG 60.873 60.000 0.00 0.00 0.00 4.41
221 222 0.461548 GATGAGACGGTGGATGCTGA 59.538 55.000 0.00 0.00 0.00 4.26
222 223 0.176680 ATGAGACGGTGGATGCTGAC 59.823 55.000 0.00 0.00 0.00 3.51
223 224 1.184970 TGAGACGGTGGATGCTGACA 61.185 55.000 0.00 0.00 0.00 3.58
224 225 0.459237 GAGACGGTGGATGCTGACAG 60.459 60.000 0.00 0.00 0.00 3.51
225 226 2.046892 ACGGTGGATGCTGACAGC 60.047 61.111 20.86 20.86 42.82 4.40
234 235 2.345991 GCTGACAGCAACCCCGTA 59.654 61.111 22.62 0.00 41.89 4.02
235 236 2.033194 GCTGACAGCAACCCCGTAC 61.033 63.158 22.62 0.00 41.89 3.67
236 237 1.375523 CTGACAGCAACCCCGTACC 60.376 63.158 0.00 0.00 0.00 3.34
237 238 1.827399 CTGACAGCAACCCCGTACCT 61.827 60.000 0.00 0.00 0.00 3.08
238 239 1.375523 GACAGCAACCCCGTACCTG 60.376 63.158 0.00 0.00 0.00 4.00
239 240 1.823169 GACAGCAACCCCGTACCTGA 61.823 60.000 0.81 0.00 0.00 3.86
240 241 1.373435 CAGCAACCCCGTACCTGAA 59.627 57.895 0.00 0.00 0.00 3.02
241 242 0.250553 CAGCAACCCCGTACCTGAAA 60.251 55.000 0.00 0.00 0.00 2.69
242 243 0.696501 AGCAACCCCGTACCTGAAAT 59.303 50.000 0.00 0.00 0.00 2.17
243 244 1.092348 GCAACCCCGTACCTGAAATC 58.908 55.000 0.00 0.00 0.00 2.17
244 245 1.365699 CAACCCCGTACCTGAAATCG 58.634 55.000 0.00 0.00 0.00 3.34
245 246 0.251073 AACCCCGTACCTGAAATCGG 59.749 55.000 0.00 0.00 42.22 4.18
248 249 3.661745 CCGTACCTGAAATCGGGAG 57.338 57.895 15.16 5.88 45.36 4.30
249 250 0.104304 CCGTACCTGAAATCGGGAGG 59.896 60.000 15.16 10.61 45.36 4.30
250 251 1.108776 CGTACCTGAAATCGGGAGGA 58.891 55.000 15.16 0.00 45.36 3.71
251 252 1.202382 CGTACCTGAAATCGGGAGGAC 60.202 57.143 15.16 8.50 45.36 3.85
252 253 1.108776 TACCTGAAATCGGGAGGACG 58.891 55.000 15.16 0.00 45.36 4.79
253 254 1.521681 CCTGAAATCGGGAGGACGC 60.522 63.158 1.81 0.00 45.36 5.19
261 262 3.224324 GGGAGGACGCGATAGGCA 61.224 66.667 15.93 0.00 43.84 4.75
262 263 2.792947 GGGAGGACGCGATAGGCAA 61.793 63.158 15.93 0.00 43.84 4.52
263 264 1.591863 GGAGGACGCGATAGGCAAC 60.592 63.158 15.93 0.00 43.84 4.17
264 265 1.141019 GAGGACGCGATAGGCAACA 59.859 57.895 15.93 0.00 43.84 3.33
265 266 0.872021 GAGGACGCGATAGGCAACAG 60.872 60.000 15.93 0.00 43.84 3.16
266 267 1.141019 GGACGCGATAGGCAACAGA 59.859 57.895 15.93 0.00 43.84 3.41
267 268 0.459585 GGACGCGATAGGCAACAGAA 60.460 55.000 15.93 0.00 43.84 3.02
268 269 0.924090 GACGCGATAGGCAACAGAAG 59.076 55.000 15.93 0.00 43.84 2.85
269 270 1.084370 ACGCGATAGGCAACAGAAGC 61.084 55.000 15.93 0.00 43.84 3.86
270 271 1.638467 GCGATAGGCAACAGAAGCG 59.362 57.895 0.00 0.00 42.87 4.68
271 272 1.766143 GCGATAGGCAACAGAAGCGG 61.766 60.000 0.00 0.00 42.87 5.52
272 273 0.179111 CGATAGGCAACAGAAGCGGA 60.179 55.000 0.00 0.00 41.41 5.54
273 274 1.576356 GATAGGCAACAGAAGCGGAG 58.424 55.000 0.00 0.00 41.41 4.63
274 275 1.137086 GATAGGCAACAGAAGCGGAGA 59.863 52.381 0.00 0.00 41.41 3.71
275 276 0.246635 TAGGCAACAGAAGCGGAGAC 59.753 55.000 0.00 0.00 41.41 3.36
288 289 3.590127 GGAGACGCCAAGGTATAGC 57.410 57.895 0.00 0.00 36.34 2.97
309 310 3.966154 CGAAGCTACTACTGGGTGTATG 58.034 50.000 0.00 0.00 0.00 2.39
310 311 3.243434 CGAAGCTACTACTGGGTGTATGG 60.243 52.174 0.00 0.00 0.00 2.74
311 312 3.682592 AGCTACTACTGGGTGTATGGA 57.317 47.619 0.00 0.00 0.00 3.41
312 313 3.297736 AGCTACTACTGGGTGTATGGAC 58.702 50.000 0.00 0.00 0.00 4.02
313 314 2.034305 GCTACTACTGGGTGTATGGACG 59.966 54.545 0.00 0.00 0.00 4.79
314 315 2.519771 ACTACTGGGTGTATGGACGA 57.480 50.000 0.00 0.00 0.00 4.20
315 316 3.028094 ACTACTGGGTGTATGGACGAT 57.972 47.619 0.00 0.00 0.00 3.73
316 317 2.693591 ACTACTGGGTGTATGGACGATG 59.306 50.000 0.00 0.00 0.00 3.84
317 318 0.178068 ACTGGGTGTATGGACGATGC 59.822 55.000 0.00 0.00 0.00 3.91
318 319 0.875908 CTGGGTGTATGGACGATGCG 60.876 60.000 0.00 0.00 0.00 4.73
319 320 1.594293 GGGTGTATGGACGATGCGG 60.594 63.158 0.00 0.00 0.00 5.69
320 321 2.244651 GGTGTATGGACGATGCGGC 61.245 63.158 0.00 0.00 0.00 6.53
321 322 1.227263 GTGTATGGACGATGCGGCT 60.227 57.895 0.00 0.00 34.07 5.52
322 323 0.810031 GTGTATGGACGATGCGGCTT 60.810 55.000 0.00 0.00 34.07 4.35
323 324 0.809636 TGTATGGACGATGCGGCTTG 60.810 55.000 0.00 0.00 34.07 4.01
324 325 0.810031 GTATGGACGATGCGGCTTGT 60.810 55.000 0.00 0.00 34.07 3.16
325 326 0.747852 TATGGACGATGCGGCTTGTA 59.252 50.000 0.00 0.00 34.07 2.41
326 327 0.106708 ATGGACGATGCGGCTTGTAT 59.893 50.000 0.00 0.00 34.07 2.29
327 328 0.747852 TGGACGATGCGGCTTGTATA 59.252 50.000 0.00 0.00 34.07 1.47
328 329 1.137282 TGGACGATGCGGCTTGTATAA 59.863 47.619 0.00 0.00 34.07 0.98
329 330 2.206750 GGACGATGCGGCTTGTATAAA 58.793 47.619 0.00 0.00 34.07 1.40
330 331 2.806244 GGACGATGCGGCTTGTATAAAT 59.194 45.455 0.00 0.00 34.07 1.40
331 332 3.250040 GGACGATGCGGCTTGTATAAATT 59.750 43.478 0.00 0.00 34.07 1.82
332 333 4.209452 ACGATGCGGCTTGTATAAATTG 57.791 40.909 0.00 0.00 0.00 2.32
333 334 3.003275 ACGATGCGGCTTGTATAAATTGG 59.997 43.478 0.00 0.00 0.00 3.16
334 335 2.861462 TGCGGCTTGTATAAATTGGC 57.139 45.000 0.00 0.00 0.00 4.52
335 336 2.095461 TGCGGCTTGTATAAATTGGCA 58.905 42.857 0.00 0.00 0.00 4.92
336 337 2.493675 TGCGGCTTGTATAAATTGGCAA 59.506 40.909 0.68 0.68 0.00 4.52
337 338 3.056536 TGCGGCTTGTATAAATTGGCAAA 60.057 39.130 3.01 0.00 0.00 3.68
338 339 3.551485 GCGGCTTGTATAAATTGGCAAAG 59.449 43.478 3.01 0.00 0.00 2.77
339 340 4.111916 CGGCTTGTATAAATTGGCAAAGG 58.888 43.478 3.01 0.00 0.00 3.11
340 341 4.142271 CGGCTTGTATAAATTGGCAAAGGA 60.142 41.667 3.01 0.00 0.00 3.36
341 342 5.109210 GGCTTGTATAAATTGGCAAAGGAC 58.891 41.667 3.01 0.00 0.00 3.85
342 343 5.105351 GGCTTGTATAAATTGGCAAAGGACT 60.105 40.000 3.01 0.00 0.00 3.85
343 344 6.036470 GCTTGTATAAATTGGCAAAGGACTC 58.964 40.000 3.01 0.00 0.00 3.36
344 345 6.524101 TTGTATAAATTGGCAAAGGACTCC 57.476 37.500 3.01 0.00 0.00 3.85
345 346 4.638421 TGTATAAATTGGCAAAGGACTCCG 59.362 41.667 3.01 0.00 0.00 4.63
346 347 1.256812 AAATTGGCAAAGGACTCCGG 58.743 50.000 3.01 0.00 0.00 5.14
347 348 0.112412 AATTGGCAAAGGACTCCGGT 59.888 50.000 3.01 0.00 0.00 5.28
348 349 0.112412 ATTGGCAAAGGACTCCGGTT 59.888 50.000 3.01 0.00 0.00 4.44
349 350 0.821711 TTGGCAAAGGACTCCGGTTG 60.822 55.000 0.00 9.22 0.00 3.77
350 351 2.626780 GGCAAAGGACTCCGGTTGC 61.627 63.158 22.31 22.31 43.61 4.17
351 352 2.966309 GCAAAGGACTCCGGTTGCG 61.966 63.158 18.37 0.00 38.74 4.85
352 353 2.032071 AAAGGACTCCGGTTGCGG 59.968 61.111 0.00 0.00 0.00 5.69
353 354 3.546714 AAAGGACTCCGGTTGCGGG 62.547 63.158 0.00 0.00 0.00 6.13
356 357 4.309950 GACTCCGGTTGCGGGTGT 62.310 66.667 0.00 0.00 34.24 4.16
357 358 4.309950 ACTCCGGTTGCGGGTGTC 62.310 66.667 0.00 0.00 0.00 3.67
358 359 4.308458 CTCCGGTTGCGGGTGTCA 62.308 66.667 0.00 0.00 0.00 3.58
359 360 3.818121 CTCCGGTTGCGGGTGTCAA 62.818 63.158 0.00 0.00 0.00 3.18
360 361 2.671619 CCGGTTGCGGGTGTCAAT 60.672 61.111 0.00 0.00 0.00 2.57
361 362 2.265182 CCGGTTGCGGGTGTCAATT 61.265 57.895 0.00 0.00 0.00 2.32
362 363 1.209127 CGGTTGCGGGTGTCAATTC 59.791 57.895 0.00 0.00 0.00 2.17
363 364 1.209127 GGTTGCGGGTGTCAATTCG 59.791 57.895 0.00 0.00 0.00 3.34
364 365 1.209127 GTTGCGGGTGTCAATTCGG 59.791 57.895 0.00 0.00 0.00 4.30
365 366 1.071642 TTGCGGGTGTCAATTCGGA 59.928 52.632 0.00 0.00 0.00 4.55
366 367 0.535328 TTGCGGGTGTCAATTCGGAA 60.535 50.000 0.00 0.00 0.00 4.30
367 368 0.322098 TGCGGGTGTCAATTCGGAAT 60.322 50.000 0.00 0.00 0.00 3.01
368 369 0.808755 GCGGGTGTCAATTCGGAATT 59.191 50.000 10.11 10.11 0.00 2.17
370 371 1.132262 CGGGTGTCAATTCGGAATTGG 59.868 52.381 32.05 19.25 46.40 3.16
371 372 2.442413 GGGTGTCAATTCGGAATTGGA 58.558 47.619 32.05 21.11 46.40 3.53
372 373 2.163613 GGGTGTCAATTCGGAATTGGAC 59.836 50.000 32.05 27.53 46.40 4.02
373 374 2.159572 GGTGTCAATTCGGAATTGGACG 60.160 50.000 32.05 15.13 46.40 4.79
374 375 2.482721 GTGTCAATTCGGAATTGGACGT 59.517 45.455 32.05 4.36 46.40 4.34
375 376 3.058501 GTGTCAATTCGGAATTGGACGTT 60.059 43.478 32.05 4.44 46.40 3.99
376 377 3.566322 TGTCAATTCGGAATTGGACGTTT 59.434 39.130 32.05 3.77 46.40 3.60
377 378 3.911964 GTCAATTCGGAATTGGACGTTTG 59.088 43.478 32.05 14.40 46.40 2.93
378 379 3.057876 TCAATTCGGAATTGGACGTTTGG 60.058 43.478 32.05 12.48 46.40 3.28
379 380 0.594110 TTCGGAATTGGACGTTTGGC 59.406 50.000 0.00 0.00 0.00 4.52
380 381 1.211709 CGGAATTGGACGTTTGGCC 59.788 57.895 0.00 0.00 0.00 5.36
381 382 1.589630 GGAATTGGACGTTTGGCCC 59.410 57.895 0.00 0.00 0.00 5.80
382 383 1.589630 GAATTGGACGTTTGGCCCC 59.410 57.895 0.00 0.00 0.00 5.80
383 384 1.884075 GAATTGGACGTTTGGCCCCC 61.884 60.000 0.00 0.00 0.00 5.40
384 385 2.380571 AATTGGACGTTTGGCCCCCT 62.381 55.000 0.00 0.00 0.00 4.79
385 386 2.781431 ATTGGACGTTTGGCCCCCTC 62.781 60.000 0.00 0.00 0.00 4.30
386 387 4.735358 GGACGTTTGGCCCCCTCC 62.735 72.222 0.00 0.00 0.00 4.30
389 390 4.778143 CGTTTGGCCCCCTCCGAG 62.778 72.222 0.00 0.00 0.00 4.63
390 391 4.426313 GTTTGGCCCCCTCCGAGG 62.426 72.222 7.56 7.56 34.30 4.63
403 404 4.573210 CGAGGGGTGATCGGAGTA 57.427 61.111 0.00 0.00 36.54 2.59
404 405 2.332277 CGAGGGGTGATCGGAGTAG 58.668 63.158 0.00 0.00 36.54 2.57
405 406 1.173444 CGAGGGGTGATCGGAGTAGG 61.173 65.000 0.00 0.00 36.54 3.18
406 407 0.828343 GAGGGGTGATCGGAGTAGGG 60.828 65.000 0.00 0.00 0.00 3.53
407 408 1.232216 GGGGTGATCGGAGTAGGGA 59.768 63.158 0.00 0.00 0.00 4.20
408 409 0.828343 GGGGTGATCGGAGTAGGGAG 60.828 65.000 0.00 0.00 0.00 4.30
409 410 1.465200 GGGTGATCGGAGTAGGGAGC 61.465 65.000 0.00 0.00 0.00 4.70
410 411 0.468400 GGTGATCGGAGTAGGGAGCT 60.468 60.000 0.00 0.00 0.00 4.09
411 412 0.671251 GTGATCGGAGTAGGGAGCTG 59.329 60.000 0.00 0.00 0.00 4.24
412 413 1.109920 TGATCGGAGTAGGGAGCTGC 61.110 60.000 0.00 0.00 0.00 5.25
413 414 1.075970 ATCGGAGTAGGGAGCTGCA 60.076 57.895 7.79 0.00 0.00 4.41
414 415 1.395826 ATCGGAGTAGGGAGCTGCAC 61.396 60.000 7.79 0.00 0.00 4.57
415 416 2.496817 GGAGTAGGGAGCTGCACG 59.503 66.667 7.79 0.00 0.00 5.34
416 417 2.496817 GAGTAGGGAGCTGCACGG 59.503 66.667 7.79 0.00 0.00 4.94
417 418 3.724914 GAGTAGGGAGCTGCACGGC 62.725 68.421 7.79 0.00 0.00 5.68
438 439 3.271014 CGGAGTCGAACCGGAGAA 58.729 61.111 20.06 0.00 45.65 2.87
439 440 1.136984 CGGAGTCGAACCGGAGAAG 59.863 63.158 20.06 0.00 45.65 2.85
440 441 1.511768 GGAGTCGAACCGGAGAAGG 59.488 63.158 9.46 0.00 37.30 3.46
447 448 3.807368 ACCGGAGAAGGTTGGAGG 58.193 61.111 9.46 0.00 43.00 4.30
448 449 1.157751 ACCGGAGAAGGTTGGAGGA 59.842 57.895 9.46 0.00 43.00 3.71
449 450 0.905337 ACCGGAGAAGGTTGGAGGAG 60.905 60.000 9.46 0.00 43.00 3.69
450 451 0.614979 CCGGAGAAGGTTGGAGGAGA 60.615 60.000 0.00 0.00 0.00 3.71
451 452 0.820871 CGGAGAAGGTTGGAGGAGAG 59.179 60.000 0.00 0.00 0.00 3.20
452 453 1.199615 GGAGAAGGTTGGAGGAGAGG 58.800 60.000 0.00 0.00 0.00 3.69
453 454 1.273324 GGAGAAGGTTGGAGGAGAGGA 60.273 57.143 0.00 0.00 0.00 3.71
454 455 2.107366 GAGAAGGTTGGAGGAGAGGAG 58.893 57.143 0.00 0.00 0.00 3.69
455 456 1.199615 GAAGGTTGGAGGAGAGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
456 457 0.252927 AAGGTTGGAGGAGAGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
457 458 1.156322 AGGTTGGAGGAGAGGAGGGA 61.156 60.000 0.00 0.00 0.00 4.20
458 459 0.689412 GGTTGGAGGAGAGGAGGGAG 60.689 65.000 0.00 0.00 0.00 4.30
459 460 0.041982 GTTGGAGGAGAGGAGGGAGT 59.958 60.000 0.00 0.00 0.00 3.85
460 461 0.041833 TTGGAGGAGAGGAGGGAGTG 59.958 60.000 0.00 0.00 0.00 3.51
461 462 1.075600 GGAGGAGAGGAGGGAGTGG 60.076 68.421 0.00 0.00 0.00 4.00
462 463 1.075600 GAGGAGAGGAGGGAGTGGG 60.076 68.421 0.00 0.00 0.00 4.61
463 464 2.041405 GGAGAGGAGGGAGTGGGG 60.041 72.222 0.00 0.00 0.00 4.96
464 465 2.637640 GGAGAGGAGGGAGTGGGGA 61.638 68.421 0.00 0.00 0.00 4.81
465 466 1.392534 GAGAGGAGGGAGTGGGGAA 59.607 63.158 0.00 0.00 0.00 3.97
466 467 0.030603 GAGAGGAGGGAGTGGGGAAT 60.031 60.000 0.00 0.00 0.00 3.01
467 468 0.423544 AGAGGAGGGAGTGGGGAATT 59.576 55.000 0.00 0.00 0.00 2.17
468 469 0.548510 GAGGAGGGAGTGGGGAATTG 59.451 60.000 0.00 0.00 0.00 2.32
469 470 0.921256 AGGAGGGAGTGGGGAATTGG 60.921 60.000 0.00 0.00 0.00 3.16
470 471 0.919289 GGAGGGAGTGGGGAATTGGA 60.919 60.000 0.00 0.00 0.00 3.53
471 472 0.999712 GAGGGAGTGGGGAATTGGAA 59.000 55.000 0.00 0.00 0.00 3.53
472 473 0.704664 AGGGAGTGGGGAATTGGAAC 59.295 55.000 0.00 0.00 0.00 3.62
473 474 0.679960 GGGAGTGGGGAATTGGAACG 60.680 60.000 0.00 0.00 0.00 3.95
474 475 0.037734 GGAGTGGGGAATTGGAACGT 59.962 55.000 0.00 0.00 0.00 3.99
475 476 1.279846 GGAGTGGGGAATTGGAACGTA 59.720 52.381 0.00 0.00 0.00 3.57
476 477 2.629051 GAGTGGGGAATTGGAACGTAG 58.371 52.381 0.00 0.00 0.00 3.51
477 478 1.280998 AGTGGGGAATTGGAACGTAGG 59.719 52.381 0.00 0.00 0.00 3.18
478 479 0.034863 TGGGGAATTGGAACGTAGGC 60.035 55.000 0.00 0.00 0.00 3.93
479 480 0.034863 GGGGAATTGGAACGTAGGCA 60.035 55.000 0.00 0.00 0.00 4.75
480 481 1.379527 GGGAATTGGAACGTAGGCAG 58.620 55.000 0.00 0.00 0.00 4.85
481 482 1.379527 GGAATTGGAACGTAGGCAGG 58.620 55.000 0.00 0.00 0.00 4.85
482 483 1.065709 GGAATTGGAACGTAGGCAGGA 60.066 52.381 0.00 0.00 0.00 3.86
483 484 2.280628 GAATTGGAACGTAGGCAGGAG 58.719 52.381 0.00 0.00 0.00 3.69
484 485 0.541863 ATTGGAACGTAGGCAGGAGG 59.458 55.000 0.00 0.00 0.00 4.30
485 486 1.550130 TTGGAACGTAGGCAGGAGGG 61.550 60.000 0.00 0.00 0.00 4.30
486 487 1.684734 GGAACGTAGGCAGGAGGGA 60.685 63.158 0.00 0.00 0.00 4.20
487 488 1.677637 GGAACGTAGGCAGGAGGGAG 61.678 65.000 0.00 0.00 0.00 4.30
488 489 0.971447 GAACGTAGGCAGGAGGGAGT 60.971 60.000 0.00 0.00 0.00 3.85
489 490 1.258445 AACGTAGGCAGGAGGGAGTG 61.258 60.000 0.00 0.00 0.00 3.51
490 491 1.682684 CGTAGGCAGGAGGGAGTGT 60.683 63.158 0.00 0.00 0.00 3.55
491 492 1.901085 GTAGGCAGGAGGGAGTGTG 59.099 63.158 0.00 0.00 0.00 3.82
492 493 1.306141 TAGGCAGGAGGGAGTGTGG 60.306 63.158 0.00 0.00 0.00 4.17
510 511 1.262640 GGGCCTTCTTCGACTGGGTA 61.263 60.000 0.84 0.00 0.00 3.69
631 632 1.446099 GACATGTTCGGCTGCTCGA 60.446 57.895 0.00 8.74 37.38 4.04
647 648 4.521062 GAGCAGCGCGGAGGACAT 62.521 66.667 13.03 0.00 0.00 3.06
690 691 4.240881 GCAATCTGCCGAATGGGA 57.759 55.556 0.00 0.00 37.42 4.37
691 692 2.724520 GCAATCTGCCGAATGGGAT 58.275 52.632 0.00 0.00 37.42 3.85
761 762 3.620428 CGCGCGCTTCGACATGAT 61.620 61.111 30.48 0.00 41.67 2.45
775 776 0.697079 CATGATGGGGGAGATGGAGG 59.303 60.000 0.00 0.00 0.00 4.30
780 781 2.774351 GGGGAGATGGAGGGGGTG 60.774 72.222 0.00 0.00 0.00 4.61
784 785 1.400530 GGAGATGGAGGGGGTGTACG 61.401 65.000 0.00 0.00 0.00 3.67
796 797 3.702048 TGTACGCCCAGCTGGTCC 61.702 66.667 30.63 19.64 36.04 4.46
822 823 1.526917 GCTGCTGCCGGATACCAAT 60.527 57.895 5.05 0.00 0.00 3.16
823 824 1.510480 GCTGCTGCCGGATACCAATC 61.510 60.000 5.05 0.00 0.00 2.67
846 847 3.301579 CGTACAACGCCATGATTAAGTCG 60.302 47.826 0.00 0.00 33.65 4.18
847 848 1.396996 ACAACGCCATGATTAAGTCGC 59.603 47.619 0.00 0.00 0.00 5.19
849 850 1.953559 ACGCCATGATTAAGTCGCAT 58.046 45.000 0.00 0.00 0.00 4.73
864 865 2.123428 GCATTGCAAGGAGGGCGAT 61.123 57.895 16.56 0.00 35.77 4.58
868 869 2.279784 GCAAGGAGGGCGATCTCG 60.280 66.667 0.00 0.00 43.27 4.04
885 886 2.438434 GCCAAGGCACACCGCTAT 60.438 61.111 6.14 0.00 42.76 2.97
890 891 1.131126 CAAGGCACACCGCTATTTCAG 59.869 52.381 0.00 0.00 42.76 3.02
910 911 3.170672 TGCTGCTGGAGTGTGGGT 61.171 61.111 0.00 0.00 0.00 4.51
921 922 2.933287 TGTGGGTTGGAGCCGGAT 60.933 61.111 5.05 0.00 38.98 4.18
942 943 5.983720 GGATACGTTCACATGTAGTAATGCT 59.016 40.000 0.00 0.00 0.00 3.79
945 946 6.203808 ACGTTCACATGTAGTAATGCTCTA 57.796 37.500 0.00 0.00 0.00 2.43
946 947 6.627243 ACGTTCACATGTAGTAATGCTCTAA 58.373 36.000 0.00 0.00 0.00 2.10
948 949 7.764443 ACGTTCACATGTAGTAATGCTCTAATT 59.236 33.333 0.00 0.00 0.00 1.40
949 950 8.604035 CGTTCACATGTAGTAATGCTCTAATTT 58.396 33.333 0.00 0.00 0.00 1.82
954 955 9.057089 ACATGTAGTAATGCTCTAATTTTAGGC 57.943 33.333 0.00 1.85 0.00 3.93
960 961 8.487028 AGTAATGCTCTAATTTTAGGCTACTGT 58.513 33.333 0.00 0.00 32.07 3.55
965 966 6.534475 TCTAATTTTAGGCTACTGTCGGAA 57.466 37.500 0.00 0.00 0.00 4.30
969 970 0.333993 TAGGCTACTGTCGGAAGGGT 59.666 55.000 0.00 0.00 0.00 4.34
970 971 1.218316 GGCTACTGTCGGAAGGGTG 59.782 63.158 0.00 0.00 0.00 4.61
1013 1014 0.677414 TTGCTGATGATGCCGCTGAA 60.677 50.000 0.00 0.00 0.00 3.02
1014 1015 1.093496 TGCTGATGATGCCGCTGAAG 61.093 55.000 0.00 0.00 0.00 3.02
1023 1024 2.597217 CCGCTGAAGGGTTGCCAA 60.597 61.111 0.00 0.00 0.00 4.52
1056 1057 7.458397 AGTACTCCTACACCATTTTGATTCAA 58.542 34.615 0.00 0.00 0.00 2.69
1094 1095 0.250727 TGTGTAAGGGAGGCACTTGC 60.251 55.000 0.00 0.00 41.55 4.01
1101 1102 2.253452 GAGGCACTTGCGCTGTTG 59.747 61.111 9.73 3.42 41.55 3.33
1114 1115 1.202110 CGCTGTTGTTGATGATGAGGC 60.202 52.381 0.00 0.00 0.00 4.70
1116 1117 1.399440 CTGTTGTTGATGATGAGGCGG 59.601 52.381 0.00 0.00 0.00 6.13
1120 1121 1.212688 TGTTGATGATGAGGCGGGATT 59.787 47.619 0.00 0.00 0.00 3.01
1132 1133 4.506255 GGGATTGGTGCTCCCCGG 62.506 72.222 1.59 0.00 45.80 5.73
1137 1138 2.608970 ATTGGTGCTCCCCGGATTCG 62.609 60.000 0.73 0.00 0.00 3.34
1268 1269 2.279784 GAGAGGAAGATGGCGGCG 60.280 66.667 0.51 0.51 0.00 6.46
1482 1484 4.434713 GAACCTTTAGTACCGGTTCGTA 57.565 45.455 15.04 0.00 44.86 3.43
1552 1554 2.874457 GCCCCGCGATCACCTTTAATAT 60.874 50.000 8.23 0.00 0.00 1.28
1554 1556 3.306780 CCCCGCGATCACCTTTAATATCT 60.307 47.826 8.23 0.00 0.00 1.98
1693 1696 3.832490 GGCCAATTTTCAAACTCTACCCT 59.168 43.478 0.00 0.00 0.00 4.34
2303 2481 7.588497 AATTGCTGAGGGTTAATAGGATTTC 57.412 36.000 0.00 0.00 0.00 2.17
2316 2494 9.952188 GTTAATAGGATTTCCAGCTTACATTTC 57.048 33.333 0.00 0.00 38.89 2.17
2609 3301 1.439944 ACCAGTACTAAAGGTCCCCCT 59.560 52.381 0.00 0.00 45.63 4.79
2713 3418 1.168714 CACTCTTTAGTGCCAAGGCC 58.831 55.000 8.89 0.00 46.28 5.19
2714 3419 0.038310 ACTCTTTAGTGCCAAGGCCC 59.962 55.000 8.89 0.00 41.09 5.80
2715 3420 0.681243 CTCTTTAGTGCCAAGGCCCC 60.681 60.000 8.89 0.00 41.09 5.80
2716 3421 1.682344 CTTTAGTGCCAAGGCCCCC 60.682 63.158 8.89 0.00 41.09 5.40
2818 3523 8.908903 TGCTTAATTCCAAAAAGAGTCTTACAA 58.091 29.630 5.65 0.00 0.00 2.41
3047 7301 3.606687 GTCCGGTTCCAAGTGTTATGAT 58.393 45.455 0.00 0.00 0.00 2.45
3111 7365 9.315525 GCTAAAATTAAACTGTTTTGGGTGTTA 57.684 29.630 11.48 3.24 0.00 2.41
3146 7400 8.170553 GTCTAAAACGTCTTACAAAAGTGAACA 58.829 33.333 0.00 0.00 34.13 3.18
3240 7494 2.885554 GCTGATGGAAGGAAATGGGTGT 60.886 50.000 0.00 0.00 0.00 4.16
3266 7520 2.804527 CAGATGATTGGACATACGGCAG 59.195 50.000 0.00 0.00 0.00 4.85
3287 7541 0.256752 TTGATCCATGGCCTCTGTGG 59.743 55.000 6.96 7.51 39.35 4.17
3300 7554 2.432510 CCTCTGTGGTGGGAAGATAGAC 59.567 54.545 0.00 0.00 0.00 2.59
3454 7708 9.793252 ATATGTTGTTGAGTAAATGCAAGATTC 57.207 29.630 0.00 0.00 0.00 2.52
3580 7834 4.082408 CGAATGTGGTCACCTACAGTTCTA 60.082 45.833 0.00 0.00 0.00 2.10
3604 7858 3.539604 AGTGATGGCTATTGCAAGACTC 58.460 45.455 4.94 0.00 41.91 3.36
3660 7914 2.673775 TGGAAAGAGATGGTTGCCAA 57.326 45.000 0.00 0.00 36.95 4.52
3802 8056 4.141390 CCTATACCACTTTGGATCAAGGCT 60.141 45.833 0.00 0.00 40.96 4.58
3823 8077 5.413499 GCTAGTGCAATGAACATGGATTTT 58.587 37.500 0.00 0.00 39.41 1.82
3835 8089 8.854979 TGAACATGGATTTTATAATGCTTTCG 57.145 30.769 0.00 0.00 33.63 3.46
3858 8112 5.221303 CGGGTTATTTCAAATGATGGAGCAT 60.221 40.000 0.00 0.00 0.00 3.79
3926 8180 0.379669 CTATGCAAAGCTGGAAGGCG 59.620 55.000 0.00 0.00 37.29 5.52
4079 8333 2.092968 GTGAGGGATGCACACCAGATAA 60.093 50.000 10.80 0.00 36.31 1.75
4130 8384 5.633996 TTATGCAAACAAAAGAAGTTGCG 57.366 34.783 0.00 0.00 31.29 4.85
4186 8440 6.435904 TCAAAGGGGAATAAAATGTACCACTG 59.564 38.462 0.00 0.00 34.40 3.66
4346 8600 2.840651 AGGAAGGTCGAATTGAGGATGT 59.159 45.455 0.00 0.00 0.00 3.06
4412 8666 5.359756 TGATGCAGTGACCTATAACACATC 58.640 41.667 0.00 0.00 39.18 3.06
4450 8704 5.373222 GGCATATGGGATATATTAACCGCA 58.627 41.667 4.56 0.00 0.00 5.69
4680 8934 4.660168 ACAGTTCTCTCATTGCAGGATTT 58.340 39.130 0.00 0.00 0.00 2.17
4729 8983 5.970023 GCTTGTGTTCTTCTTGATCATATGC 59.030 40.000 0.00 0.00 33.32 3.14
4732 8986 5.291858 TGTGTTCTTCTTGATCATATGCGTC 59.708 40.000 0.00 0.00 0.00 5.19
4793 9047 5.501413 CGCTTATCAAGTGCTGTTGTGATAG 60.501 44.000 0.00 0.00 35.12 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.790718 GGAGTATGAATTCAATAATGCAGTCAT 58.209 33.333 13.09 0.00 33.98 3.06
3 4 8.158169 TGGAGTATGAATTCAATAATGCAGTC 57.842 34.615 13.09 4.60 33.98 3.51
4 5 8.408601 GTTGGAGTATGAATTCAATAATGCAGT 58.591 33.333 13.09 0.00 33.98 4.40
5 6 7.864379 GGTTGGAGTATGAATTCAATAATGCAG 59.136 37.037 13.09 0.00 33.98 4.41
6 7 7.341512 TGGTTGGAGTATGAATTCAATAATGCA 59.658 33.333 13.09 12.43 35.02 3.96
7 8 7.715657 TGGTTGGAGTATGAATTCAATAATGC 58.284 34.615 13.09 10.23 0.00 3.56
8 9 9.520204 GTTGGTTGGAGTATGAATTCAATAATG 57.480 33.333 13.09 0.00 0.00 1.90
9 10 9.479549 AGTTGGTTGGAGTATGAATTCAATAAT 57.520 29.630 13.09 5.05 0.00 1.28
10 11 8.877864 AGTTGGTTGGAGTATGAATTCAATAA 57.122 30.769 13.09 0.00 0.00 1.40
11 12 8.106462 TGAGTTGGTTGGAGTATGAATTCAATA 58.894 33.333 13.09 3.10 0.00 1.90
12 13 6.947733 TGAGTTGGTTGGAGTATGAATTCAAT 59.052 34.615 13.09 1.32 0.00 2.57
13 14 6.303054 TGAGTTGGTTGGAGTATGAATTCAA 58.697 36.000 13.09 0.00 0.00 2.69
14 15 5.875224 TGAGTTGGTTGGAGTATGAATTCA 58.125 37.500 11.26 11.26 0.00 2.57
15 16 6.038714 GGATGAGTTGGTTGGAGTATGAATTC 59.961 42.308 0.00 0.00 0.00 2.17
16 17 5.888161 GGATGAGTTGGTTGGAGTATGAATT 59.112 40.000 0.00 0.00 0.00 2.17
17 18 5.044919 TGGATGAGTTGGTTGGAGTATGAAT 60.045 40.000 0.00 0.00 0.00 2.57
18 19 4.288366 TGGATGAGTTGGTTGGAGTATGAA 59.712 41.667 0.00 0.00 0.00 2.57
19 20 3.843619 TGGATGAGTTGGTTGGAGTATGA 59.156 43.478 0.00 0.00 0.00 2.15
20 21 4.220693 TGGATGAGTTGGTTGGAGTATG 57.779 45.455 0.00 0.00 0.00 2.39
21 22 4.927267 TTGGATGAGTTGGTTGGAGTAT 57.073 40.909 0.00 0.00 0.00 2.12
22 23 4.715534 TTTGGATGAGTTGGTTGGAGTA 57.284 40.909 0.00 0.00 0.00 2.59
23 24 3.593442 TTTGGATGAGTTGGTTGGAGT 57.407 42.857 0.00 0.00 0.00 3.85
24 25 3.891366 ACTTTTGGATGAGTTGGTTGGAG 59.109 43.478 0.00 0.00 0.00 3.86
25 26 3.888930 GACTTTTGGATGAGTTGGTTGGA 59.111 43.478 0.00 0.00 0.00 3.53
26 27 3.005791 GGACTTTTGGATGAGTTGGTTGG 59.994 47.826 0.00 0.00 0.00 3.77
27 28 3.636300 TGGACTTTTGGATGAGTTGGTTG 59.364 43.478 0.00 0.00 0.00 3.77
28 29 3.909732 TGGACTTTTGGATGAGTTGGTT 58.090 40.909 0.00 0.00 0.00 3.67
29 30 3.593442 TGGACTTTTGGATGAGTTGGT 57.407 42.857 0.00 0.00 0.00 3.67
30 31 4.342092 AGTTTGGACTTTTGGATGAGTTGG 59.658 41.667 0.00 0.00 29.87 3.77
31 32 5.067674 TCAGTTTGGACTTTTGGATGAGTTG 59.932 40.000 0.00 0.00 32.54 3.16
32 33 5.200483 TCAGTTTGGACTTTTGGATGAGTT 58.800 37.500 0.00 0.00 32.54 3.01
33 34 4.792068 TCAGTTTGGACTTTTGGATGAGT 58.208 39.130 0.00 0.00 32.54 3.41
34 35 5.336213 CCATCAGTTTGGACTTTTGGATGAG 60.336 44.000 0.00 0.00 39.25 2.90
35 36 4.523943 CCATCAGTTTGGACTTTTGGATGA 59.476 41.667 0.00 0.00 39.25 2.92
36 37 4.523943 TCCATCAGTTTGGACTTTTGGATG 59.476 41.667 0.00 0.00 40.90 3.51
37 38 4.739793 TCCATCAGTTTGGACTTTTGGAT 58.260 39.130 4.10 0.00 40.90 3.41
38 39 4.144297 CTCCATCAGTTTGGACTTTTGGA 58.856 43.478 6.91 6.91 40.90 3.53
39 40 3.256631 CCTCCATCAGTTTGGACTTTTGG 59.743 47.826 0.00 0.00 40.90 3.28
40 41 3.256631 CCCTCCATCAGTTTGGACTTTTG 59.743 47.826 0.00 0.00 40.90 2.44
41 42 3.140144 TCCCTCCATCAGTTTGGACTTTT 59.860 43.478 0.00 0.00 40.90 2.27
42 43 2.716424 TCCCTCCATCAGTTTGGACTTT 59.284 45.455 0.00 0.00 40.90 2.66
43 44 2.307098 CTCCCTCCATCAGTTTGGACTT 59.693 50.000 0.00 0.00 40.90 3.01
44 45 1.912043 CTCCCTCCATCAGTTTGGACT 59.088 52.381 0.00 0.00 40.90 3.85
45 46 1.065126 CCTCCCTCCATCAGTTTGGAC 60.065 57.143 0.00 0.00 40.90 4.02
46 47 1.289160 CCTCCCTCCATCAGTTTGGA 58.711 55.000 0.00 0.00 43.56 3.53
47 48 0.394899 GCCTCCCTCCATCAGTTTGG 60.395 60.000 0.00 0.00 38.18 3.28
48 49 0.329261 TGCCTCCCTCCATCAGTTTG 59.671 55.000 0.00 0.00 0.00 2.93
49 50 0.622665 CTGCCTCCCTCCATCAGTTT 59.377 55.000 0.00 0.00 0.00 2.66
50 51 1.277580 CCTGCCTCCCTCCATCAGTT 61.278 60.000 0.00 0.00 0.00 3.16
51 52 1.692042 CCTGCCTCCCTCCATCAGT 60.692 63.158 0.00 0.00 0.00 3.41
52 53 3.117452 GCCTGCCTCCCTCCATCAG 62.117 68.421 0.00 0.00 0.00 2.90
53 54 3.092511 GCCTGCCTCCCTCCATCA 61.093 66.667 0.00 0.00 0.00 3.07
54 55 2.004408 ATTGCCTGCCTCCCTCCATC 62.004 60.000 0.00 0.00 0.00 3.51
55 56 0.698886 TATTGCCTGCCTCCCTCCAT 60.699 55.000 0.00 0.00 0.00 3.41
56 57 0.698886 ATATTGCCTGCCTCCCTCCA 60.699 55.000 0.00 0.00 0.00 3.86
57 58 1.362224 TATATTGCCTGCCTCCCTCC 58.638 55.000 0.00 0.00 0.00 4.30
58 59 3.728385 AATATATTGCCTGCCTCCCTC 57.272 47.619 0.00 0.00 0.00 4.30
59 60 4.106987 AGAAAATATATTGCCTGCCTCCCT 59.893 41.667 0.00 0.00 0.00 4.20
60 61 4.411013 AGAAAATATATTGCCTGCCTCCC 58.589 43.478 0.00 0.00 0.00 4.30
61 62 5.536161 TCAAGAAAATATATTGCCTGCCTCC 59.464 40.000 0.00 0.00 0.00 4.30
62 63 6.639632 TCAAGAAAATATATTGCCTGCCTC 57.360 37.500 0.00 0.00 0.00 4.70
63 64 6.608808 AGTTCAAGAAAATATATTGCCTGCCT 59.391 34.615 0.00 0.00 0.00 4.75
64 65 6.809869 AGTTCAAGAAAATATATTGCCTGCC 58.190 36.000 0.00 0.00 0.00 4.85
65 66 7.483307 TGAGTTCAAGAAAATATATTGCCTGC 58.517 34.615 0.00 0.00 0.00 4.85
90 91 2.630580 GGTATCCGAGCCAAGAGATCTT 59.369 50.000 0.00 0.00 36.45 2.40
91 92 2.243810 GGTATCCGAGCCAAGAGATCT 58.756 52.381 0.00 0.00 0.00 2.75
92 93 1.964223 TGGTATCCGAGCCAAGAGATC 59.036 52.381 0.00 0.00 0.00 2.75
93 94 2.088104 TGGTATCCGAGCCAAGAGAT 57.912 50.000 0.00 0.00 0.00 2.75
94 95 2.088104 ATGGTATCCGAGCCAAGAGA 57.912 50.000 0.00 0.00 38.38 3.10
95 96 4.021104 TCAATATGGTATCCGAGCCAAGAG 60.021 45.833 0.00 0.00 38.38 2.85
96 97 3.901222 TCAATATGGTATCCGAGCCAAGA 59.099 43.478 0.00 0.00 38.38 3.02
97 98 4.271696 TCAATATGGTATCCGAGCCAAG 57.728 45.455 0.00 0.00 38.38 3.61
98 99 4.698201 TTCAATATGGTATCCGAGCCAA 57.302 40.909 0.00 0.00 38.38 4.52
99 100 4.908601 ATTCAATATGGTATCCGAGCCA 57.091 40.909 0.00 0.00 39.33 4.75
100 101 5.245531 TGAATTCAATATGGTATCCGAGCC 58.754 41.667 5.45 0.00 0.00 4.70
101 102 6.676456 GCATGAATTCAATATGGTATCCGAGC 60.676 42.308 13.09 0.00 0.00 5.03
102 103 6.372381 TGCATGAATTCAATATGGTATCCGAG 59.628 38.462 13.09 0.00 0.00 4.63
103 104 6.237154 TGCATGAATTCAATATGGTATCCGA 58.763 36.000 13.09 0.00 0.00 4.55
104 105 6.499234 TGCATGAATTCAATATGGTATCCG 57.501 37.500 13.09 0.00 0.00 4.18
105 106 6.071784 TGCTGCATGAATTCAATATGGTATCC 60.072 38.462 13.09 0.00 0.00 2.59
106 107 6.916440 TGCTGCATGAATTCAATATGGTATC 58.084 36.000 13.09 0.00 0.00 2.24
107 108 6.571731 GCTGCTGCATGAATTCAATATGGTAT 60.572 38.462 13.09 0.00 39.41 2.73
108 109 5.278610 GCTGCTGCATGAATTCAATATGGTA 60.279 40.000 13.09 1.50 39.41 3.25
109 110 4.500887 GCTGCTGCATGAATTCAATATGGT 60.501 41.667 13.09 0.00 39.41 3.55
110 111 3.987868 GCTGCTGCATGAATTCAATATGG 59.012 43.478 13.09 3.64 39.41 2.74
111 112 3.987868 GGCTGCTGCATGAATTCAATATG 59.012 43.478 13.09 7.69 41.91 1.78
112 113 3.639561 TGGCTGCTGCATGAATTCAATAT 59.360 39.130 13.09 0.00 41.91 1.28
113 114 3.025262 TGGCTGCTGCATGAATTCAATA 58.975 40.909 13.09 0.99 41.91 1.90
114 115 1.828595 TGGCTGCTGCATGAATTCAAT 59.171 42.857 13.09 0.00 41.91 2.57
115 116 1.258676 TGGCTGCTGCATGAATTCAA 58.741 45.000 13.09 0.00 41.91 2.69
116 117 1.067425 GTTGGCTGCTGCATGAATTCA 60.067 47.619 17.89 11.26 41.91 2.57
117 118 1.203994 AGTTGGCTGCTGCATGAATTC 59.796 47.619 17.89 0.00 41.91 2.17
118 119 1.203994 GAGTTGGCTGCTGCATGAATT 59.796 47.619 17.89 3.73 41.91 2.17
119 120 0.815734 GAGTTGGCTGCTGCATGAAT 59.184 50.000 17.89 1.47 41.91 2.57
120 121 0.537828 TGAGTTGGCTGCTGCATGAA 60.538 50.000 17.89 4.04 41.91 2.57
121 122 0.323087 ATGAGTTGGCTGCTGCATGA 60.323 50.000 17.89 0.00 41.91 3.07
122 123 0.100682 GATGAGTTGGCTGCTGCATG 59.899 55.000 17.89 0.00 41.91 4.06
123 124 1.035932 GGATGAGTTGGCTGCTGCAT 61.036 55.000 17.89 0.56 41.91 3.96
124 125 1.676635 GGATGAGTTGGCTGCTGCA 60.677 57.895 17.89 0.88 41.91 4.41
125 126 1.246056 TTGGATGAGTTGGCTGCTGC 61.246 55.000 7.10 7.10 38.76 5.25
126 127 1.250328 TTTGGATGAGTTGGCTGCTG 58.750 50.000 0.00 0.00 0.00 4.41
127 128 1.999648 TTTTGGATGAGTTGGCTGCT 58.000 45.000 0.00 0.00 0.00 4.24
128 129 2.818130 TTTTTGGATGAGTTGGCTGC 57.182 45.000 0.00 0.00 0.00 5.25
129 130 3.674138 CGGATTTTTGGATGAGTTGGCTG 60.674 47.826 0.00 0.00 0.00 4.85
130 131 2.493278 CGGATTTTTGGATGAGTTGGCT 59.507 45.455 0.00 0.00 0.00 4.75
131 132 2.491693 TCGGATTTTTGGATGAGTTGGC 59.508 45.455 0.00 0.00 0.00 4.52
132 133 4.218417 AGTTCGGATTTTTGGATGAGTTGG 59.782 41.667 0.00 0.00 0.00 3.77
133 134 5.048782 TCAGTTCGGATTTTTGGATGAGTTG 60.049 40.000 0.00 0.00 0.00 3.16
134 135 5.070001 TCAGTTCGGATTTTTGGATGAGTT 58.930 37.500 0.00 0.00 0.00 3.01
135 136 4.651778 TCAGTTCGGATTTTTGGATGAGT 58.348 39.130 0.00 0.00 0.00 3.41
136 137 5.503031 CGATCAGTTCGGATTTTTGGATGAG 60.503 44.000 0.00 0.00 44.28 2.90
137 138 4.332543 CGATCAGTTCGGATTTTTGGATGA 59.667 41.667 0.00 0.00 44.28 2.92
138 139 4.591202 CGATCAGTTCGGATTTTTGGATG 58.409 43.478 0.00 0.00 44.28 3.51
139 140 4.882671 CGATCAGTTCGGATTTTTGGAT 57.117 40.909 0.00 0.00 44.28 3.41
151 152 1.066908 CCTGCCTCTCTCGATCAGTTC 59.933 57.143 0.00 0.00 0.00 3.01
152 153 1.110442 CCTGCCTCTCTCGATCAGTT 58.890 55.000 0.00 0.00 0.00 3.16
153 154 1.391157 GCCTGCCTCTCTCGATCAGT 61.391 60.000 0.00 0.00 0.00 3.41
154 155 1.363443 GCCTGCCTCTCTCGATCAG 59.637 63.158 0.00 0.00 0.00 2.90
155 156 0.972471 TTGCCTGCCTCTCTCGATCA 60.972 55.000 0.00 0.00 0.00 2.92
156 157 0.392336 ATTGCCTGCCTCTCTCGATC 59.608 55.000 0.00 0.00 0.00 3.69
157 158 1.709578 TATTGCCTGCCTCTCTCGAT 58.290 50.000 0.00 0.00 0.00 3.59
158 159 1.709578 ATATTGCCTGCCTCTCTCGA 58.290 50.000 0.00 0.00 0.00 4.04
159 160 3.883830 ATATATTGCCTGCCTCTCTCG 57.116 47.619 0.00 0.00 0.00 4.04
160 161 5.555017 TGAAATATATTGCCTGCCTCTCTC 58.445 41.667 0.00 0.00 0.00 3.20
161 162 5.573380 TGAAATATATTGCCTGCCTCTCT 57.427 39.130 0.00 0.00 0.00 3.10
162 163 5.532406 TGTTGAAATATATTGCCTGCCTCTC 59.468 40.000 0.00 0.00 0.00 3.20
163 164 5.448654 TGTTGAAATATATTGCCTGCCTCT 58.551 37.500 0.00 0.00 0.00 3.69
164 165 5.532406 TCTGTTGAAATATATTGCCTGCCTC 59.468 40.000 0.00 0.00 0.00 4.70
165 166 5.448654 TCTGTTGAAATATATTGCCTGCCT 58.551 37.500 0.00 0.00 0.00 4.75
166 167 5.772825 TCTGTTGAAATATATTGCCTGCC 57.227 39.130 0.00 0.00 0.00 4.85
167 168 6.799512 ACTTCTGTTGAAATATATTGCCTGC 58.200 36.000 0.00 0.00 0.00 4.85
168 169 9.722056 GTTACTTCTGTTGAAATATATTGCCTG 57.278 33.333 0.00 0.00 0.00 4.85
169 170 8.612619 CGTTACTTCTGTTGAAATATATTGCCT 58.387 33.333 0.00 0.00 0.00 4.75
170 171 8.609176 TCGTTACTTCTGTTGAAATATATTGCC 58.391 33.333 0.00 0.00 0.00 4.52
176 177 8.380644 CGTCAATCGTTACTTCTGTTGAAATAT 58.619 33.333 0.00 0.00 34.52 1.28
177 178 7.595875 TCGTCAATCGTTACTTCTGTTGAAATA 59.404 33.333 0.00 0.00 40.80 1.40
178 179 6.422701 TCGTCAATCGTTACTTCTGTTGAAAT 59.577 34.615 0.00 0.00 40.80 2.17
179 180 5.749588 TCGTCAATCGTTACTTCTGTTGAAA 59.250 36.000 0.00 0.00 40.80 2.69
180 181 5.283294 TCGTCAATCGTTACTTCTGTTGAA 58.717 37.500 0.00 0.00 40.80 2.69
181 182 4.862350 TCGTCAATCGTTACTTCTGTTGA 58.138 39.130 0.00 0.00 40.80 3.18
182 183 5.344933 TCATCGTCAATCGTTACTTCTGTTG 59.655 40.000 0.00 0.00 40.80 3.33
183 184 5.466819 TCATCGTCAATCGTTACTTCTGTT 58.533 37.500 0.00 0.00 40.80 3.16
184 185 5.055642 TCATCGTCAATCGTTACTTCTGT 57.944 39.130 0.00 0.00 40.80 3.41
185 186 5.228220 GTCTCATCGTCAATCGTTACTTCTG 59.772 44.000 0.00 0.00 40.80 3.02
186 187 5.333513 GTCTCATCGTCAATCGTTACTTCT 58.666 41.667 0.00 0.00 40.80 2.85
187 188 4.202558 CGTCTCATCGTCAATCGTTACTTC 59.797 45.833 0.00 0.00 40.80 3.01
188 189 4.096311 CGTCTCATCGTCAATCGTTACTT 58.904 43.478 0.00 0.00 40.80 2.24
189 190 3.487042 CCGTCTCATCGTCAATCGTTACT 60.487 47.826 0.00 0.00 40.80 2.24
190 191 2.782192 CCGTCTCATCGTCAATCGTTAC 59.218 50.000 0.00 0.00 40.80 2.50
191 192 2.421073 ACCGTCTCATCGTCAATCGTTA 59.579 45.455 0.00 0.00 40.80 3.18
192 193 1.201647 ACCGTCTCATCGTCAATCGTT 59.798 47.619 0.00 0.00 40.80 3.85
193 194 0.809385 ACCGTCTCATCGTCAATCGT 59.191 50.000 0.00 0.00 40.80 3.73
194 195 1.191944 CACCGTCTCATCGTCAATCG 58.808 55.000 0.00 0.00 41.41 3.34
195 196 1.134367 TCCACCGTCTCATCGTCAATC 59.866 52.381 0.00 0.00 0.00 2.67
196 197 1.182667 TCCACCGTCTCATCGTCAAT 58.817 50.000 0.00 0.00 0.00 2.57
197 198 1.135112 CATCCACCGTCTCATCGTCAA 60.135 52.381 0.00 0.00 0.00 3.18
198 199 0.455815 CATCCACCGTCTCATCGTCA 59.544 55.000 0.00 0.00 0.00 4.35
199 200 0.872021 GCATCCACCGTCTCATCGTC 60.872 60.000 0.00 0.00 0.00 4.20
200 201 1.141881 GCATCCACCGTCTCATCGT 59.858 57.895 0.00 0.00 0.00 3.73
201 202 0.873312 CAGCATCCACCGTCTCATCG 60.873 60.000 0.00 0.00 0.00 3.84
202 203 0.461548 TCAGCATCCACCGTCTCATC 59.538 55.000 0.00 0.00 0.00 2.92
203 204 0.176680 GTCAGCATCCACCGTCTCAT 59.823 55.000 0.00 0.00 0.00 2.90
204 205 1.184970 TGTCAGCATCCACCGTCTCA 61.185 55.000 0.00 0.00 0.00 3.27
205 206 0.459237 CTGTCAGCATCCACCGTCTC 60.459 60.000 0.00 0.00 0.00 3.36
206 207 1.593787 CTGTCAGCATCCACCGTCT 59.406 57.895 0.00 0.00 0.00 4.18
207 208 2.103042 GCTGTCAGCATCCACCGTC 61.103 63.158 20.16 0.00 41.89 4.79
208 209 2.046892 GCTGTCAGCATCCACCGT 60.047 61.111 20.16 0.00 41.89 4.83
217 218 2.033194 GTACGGGGTTGCTGTCAGC 61.033 63.158 18.32 18.32 42.82 4.26
218 219 1.375523 GGTACGGGGTTGCTGTCAG 60.376 63.158 0.00 0.00 0.00 3.51
219 220 1.839747 AGGTACGGGGTTGCTGTCA 60.840 57.895 0.00 0.00 0.00 3.58
220 221 1.375523 CAGGTACGGGGTTGCTGTC 60.376 63.158 0.00 0.00 0.00 3.51
221 222 1.412453 TTCAGGTACGGGGTTGCTGT 61.412 55.000 0.00 0.00 0.00 4.40
222 223 0.250553 TTTCAGGTACGGGGTTGCTG 60.251 55.000 0.00 0.00 0.00 4.41
223 224 0.696501 ATTTCAGGTACGGGGTTGCT 59.303 50.000 0.00 0.00 0.00 3.91
224 225 1.092348 GATTTCAGGTACGGGGTTGC 58.908 55.000 0.00 0.00 0.00 4.17
225 226 1.365699 CGATTTCAGGTACGGGGTTG 58.634 55.000 0.00 0.00 0.00 3.77
226 227 0.251073 CCGATTTCAGGTACGGGGTT 59.749 55.000 0.00 0.00 41.41 4.11
227 228 1.902556 CCGATTTCAGGTACGGGGT 59.097 57.895 0.00 0.00 41.41 4.95
228 229 4.848685 CCGATTTCAGGTACGGGG 57.151 61.111 0.00 0.00 41.41 5.73
230 231 0.104304 CCTCCCGATTTCAGGTACGG 59.896 60.000 0.00 0.00 44.16 4.02
231 232 1.108776 TCCTCCCGATTTCAGGTACG 58.891 55.000 0.00 0.00 0.00 3.67
232 233 1.202382 CGTCCTCCCGATTTCAGGTAC 60.202 57.143 0.00 0.00 0.00 3.34
233 234 1.108776 CGTCCTCCCGATTTCAGGTA 58.891 55.000 0.00 0.00 0.00 3.08
234 235 1.898154 CGTCCTCCCGATTTCAGGT 59.102 57.895 0.00 0.00 0.00 4.00
235 236 1.521681 GCGTCCTCCCGATTTCAGG 60.522 63.158 0.00 0.00 0.00 3.86
236 237 1.878522 CGCGTCCTCCCGATTTCAG 60.879 63.158 0.00 0.00 0.00 3.02
237 238 1.672854 ATCGCGTCCTCCCGATTTCA 61.673 55.000 5.77 0.00 40.95 2.69
238 239 0.313043 TATCGCGTCCTCCCGATTTC 59.687 55.000 5.77 0.00 43.25 2.17
239 240 0.314302 CTATCGCGTCCTCCCGATTT 59.686 55.000 5.77 0.00 43.25 2.17
240 241 1.524863 CCTATCGCGTCCTCCCGATT 61.525 60.000 5.77 0.00 43.25 3.34
241 242 1.972223 CCTATCGCGTCCTCCCGAT 60.972 63.158 5.77 0.00 45.18 4.18
242 243 2.593725 CCTATCGCGTCCTCCCGA 60.594 66.667 5.77 0.00 37.91 5.14
243 244 4.344474 GCCTATCGCGTCCTCCCG 62.344 72.222 5.77 0.00 0.00 5.14
244 245 2.792947 TTGCCTATCGCGTCCTCCC 61.793 63.158 5.77 0.00 42.08 4.30
245 246 1.591863 GTTGCCTATCGCGTCCTCC 60.592 63.158 5.77 0.00 42.08 4.30
246 247 0.872021 CTGTTGCCTATCGCGTCCTC 60.872 60.000 5.77 0.00 42.08 3.71
247 248 1.141881 CTGTTGCCTATCGCGTCCT 59.858 57.895 5.77 0.00 42.08 3.85
248 249 0.459585 TTCTGTTGCCTATCGCGTCC 60.460 55.000 5.77 0.00 42.08 4.79
249 250 0.924090 CTTCTGTTGCCTATCGCGTC 59.076 55.000 5.77 0.00 42.08 5.19
250 251 1.084370 GCTTCTGTTGCCTATCGCGT 61.084 55.000 5.77 0.00 42.08 6.01
251 252 1.638467 GCTTCTGTTGCCTATCGCG 59.362 57.895 0.00 0.00 42.08 5.87
252 253 1.638467 CGCTTCTGTTGCCTATCGC 59.362 57.895 0.00 0.00 38.31 4.58
253 254 0.179111 TCCGCTTCTGTTGCCTATCG 60.179 55.000 0.00 0.00 0.00 2.92
254 255 1.137086 TCTCCGCTTCTGTTGCCTATC 59.863 52.381 0.00 0.00 0.00 2.08
255 256 1.134670 GTCTCCGCTTCTGTTGCCTAT 60.135 52.381 0.00 0.00 0.00 2.57
256 257 0.246635 GTCTCCGCTTCTGTTGCCTA 59.753 55.000 0.00 0.00 0.00 3.93
257 258 1.004440 GTCTCCGCTTCTGTTGCCT 60.004 57.895 0.00 0.00 0.00 4.75
258 259 2.383527 CGTCTCCGCTTCTGTTGCC 61.384 63.158 0.00 0.00 0.00 4.52
259 260 3.159984 CGTCTCCGCTTCTGTTGC 58.840 61.111 0.00 0.00 0.00 4.17
269 270 0.318784 GCTATACCTTGGCGTCTCCG 60.319 60.000 0.00 0.00 37.80 4.63
270 271 0.318784 CGCTATACCTTGGCGTCTCC 60.319 60.000 0.00 0.00 43.28 3.71
271 272 3.180984 CGCTATACCTTGGCGTCTC 57.819 57.895 0.00 0.00 43.28 3.36
275 276 3.174496 GTAGCTTCGCTATACCTTGGCG 61.174 54.545 0.00 0.00 43.30 5.69
276 277 2.036089 AGTAGCTTCGCTATACCTTGGC 59.964 50.000 0.00 0.00 43.30 4.52
277 278 4.519730 AGTAGTAGCTTCGCTATACCTTGG 59.480 45.833 0.00 0.00 43.30 3.61
278 279 5.453648 CAGTAGTAGCTTCGCTATACCTTG 58.546 45.833 0.00 0.00 43.30 3.61
279 280 4.519730 CCAGTAGTAGCTTCGCTATACCTT 59.480 45.833 0.00 0.00 43.30 3.50
280 281 4.073549 CCAGTAGTAGCTTCGCTATACCT 58.926 47.826 0.00 0.00 43.30 3.08
281 282 3.190953 CCCAGTAGTAGCTTCGCTATACC 59.809 52.174 0.00 0.00 43.30 2.73
282 283 3.819902 ACCCAGTAGTAGCTTCGCTATAC 59.180 47.826 0.00 3.91 43.30 1.47
283 284 3.819337 CACCCAGTAGTAGCTTCGCTATA 59.181 47.826 0.00 0.00 43.30 1.31
284 285 2.623889 CACCCAGTAGTAGCTTCGCTAT 59.376 50.000 0.00 0.00 43.30 2.97
285 286 2.022195 CACCCAGTAGTAGCTTCGCTA 58.978 52.381 0.00 0.00 40.44 4.26
286 287 0.818296 CACCCAGTAGTAGCTTCGCT 59.182 55.000 0.00 0.00 43.41 4.93
287 288 0.531200 ACACCCAGTAGTAGCTTCGC 59.469 55.000 0.00 0.00 0.00 4.70
288 289 3.243434 CCATACACCCAGTAGTAGCTTCG 60.243 52.174 0.00 0.00 35.85 3.79
289 290 3.958798 TCCATACACCCAGTAGTAGCTTC 59.041 47.826 0.00 0.00 35.85 3.86
290 291 3.705072 GTCCATACACCCAGTAGTAGCTT 59.295 47.826 0.00 0.00 35.85 3.74
291 292 3.297736 GTCCATACACCCAGTAGTAGCT 58.702 50.000 0.00 0.00 35.85 3.32
292 293 2.034305 CGTCCATACACCCAGTAGTAGC 59.966 54.545 0.00 0.00 35.85 3.58
293 294 3.548770 TCGTCCATACACCCAGTAGTAG 58.451 50.000 0.00 0.00 35.85 2.57
294 295 3.650281 TCGTCCATACACCCAGTAGTA 57.350 47.619 0.00 0.00 35.85 1.82
295 296 2.519771 TCGTCCATACACCCAGTAGT 57.480 50.000 0.00 0.00 35.85 2.73
296 297 2.545952 GCATCGTCCATACACCCAGTAG 60.546 54.545 0.00 0.00 35.85 2.57
297 298 1.411246 GCATCGTCCATACACCCAGTA 59.589 52.381 0.00 0.00 37.06 2.74
298 299 0.178068 GCATCGTCCATACACCCAGT 59.822 55.000 0.00 0.00 0.00 4.00
299 300 0.875908 CGCATCGTCCATACACCCAG 60.876 60.000 0.00 0.00 0.00 4.45
300 301 1.142965 CGCATCGTCCATACACCCA 59.857 57.895 0.00 0.00 0.00 4.51
301 302 1.594293 CCGCATCGTCCATACACCC 60.594 63.158 0.00 0.00 0.00 4.61
302 303 2.244651 GCCGCATCGTCCATACACC 61.245 63.158 0.00 0.00 0.00 4.16
303 304 0.810031 AAGCCGCATCGTCCATACAC 60.810 55.000 0.00 0.00 0.00 2.90
304 305 0.809636 CAAGCCGCATCGTCCATACA 60.810 55.000 0.00 0.00 0.00 2.29
305 306 0.810031 ACAAGCCGCATCGTCCATAC 60.810 55.000 0.00 0.00 0.00 2.39
306 307 0.747852 TACAAGCCGCATCGTCCATA 59.252 50.000 0.00 0.00 0.00 2.74
307 308 0.106708 ATACAAGCCGCATCGTCCAT 59.893 50.000 0.00 0.00 0.00 3.41
308 309 0.747852 TATACAAGCCGCATCGTCCA 59.252 50.000 0.00 0.00 0.00 4.02
309 310 1.860676 TTATACAAGCCGCATCGTCC 58.139 50.000 0.00 0.00 0.00 4.79
310 311 4.211389 CAATTTATACAAGCCGCATCGTC 58.789 43.478 0.00 0.00 0.00 4.20
311 312 3.003275 CCAATTTATACAAGCCGCATCGT 59.997 43.478 0.00 0.00 0.00 3.73
312 313 3.554524 CCAATTTATACAAGCCGCATCG 58.445 45.455 0.00 0.00 0.00 3.84
313 314 3.243367 TGCCAATTTATACAAGCCGCATC 60.243 43.478 0.00 0.00 0.00 3.91
314 315 2.692557 TGCCAATTTATACAAGCCGCAT 59.307 40.909 0.00 0.00 0.00 4.73
315 316 2.095461 TGCCAATTTATACAAGCCGCA 58.905 42.857 0.00 0.00 0.00 5.69
316 317 2.861462 TGCCAATTTATACAAGCCGC 57.139 45.000 0.00 0.00 0.00 6.53
317 318 4.111916 CCTTTGCCAATTTATACAAGCCG 58.888 43.478 0.00 0.00 0.00 5.52
318 319 5.105351 AGTCCTTTGCCAATTTATACAAGCC 60.105 40.000 0.00 0.00 0.00 4.35
319 320 5.965922 AGTCCTTTGCCAATTTATACAAGC 58.034 37.500 0.00 0.00 0.00 4.01
320 321 6.564328 GGAGTCCTTTGCCAATTTATACAAG 58.436 40.000 0.41 0.00 0.00 3.16
321 322 5.124776 CGGAGTCCTTTGCCAATTTATACAA 59.875 40.000 7.77 0.00 0.00 2.41
322 323 4.638421 CGGAGTCCTTTGCCAATTTATACA 59.362 41.667 7.77 0.00 0.00 2.29
323 324 4.036380 CCGGAGTCCTTTGCCAATTTATAC 59.964 45.833 7.77 0.00 0.00 1.47
324 325 4.204012 CCGGAGTCCTTTGCCAATTTATA 58.796 43.478 7.77 0.00 0.00 0.98
325 326 3.023832 CCGGAGTCCTTTGCCAATTTAT 58.976 45.455 7.77 0.00 0.00 1.40
326 327 2.224917 ACCGGAGTCCTTTGCCAATTTA 60.225 45.455 9.46 0.00 0.00 1.40
327 328 1.256812 CCGGAGTCCTTTGCCAATTT 58.743 50.000 7.77 0.00 0.00 1.82
328 329 0.112412 ACCGGAGTCCTTTGCCAATT 59.888 50.000 9.46 0.00 0.00 2.32
329 330 0.112412 AACCGGAGTCCTTTGCCAAT 59.888 50.000 9.46 0.00 0.00 3.16
330 331 0.821711 CAACCGGAGTCCTTTGCCAA 60.822 55.000 9.46 0.00 0.00 4.52
331 332 1.228124 CAACCGGAGTCCTTTGCCA 60.228 57.895 9.46 0.00 0.00 4.92
332 333 2.626780 GCAACCGGAGTCCTTTGCC 61.627 63.158 24.93 13.15 35.49 4.52
333 334 2.954611 GCAACCGGAGTCCTTTGC 59.045 61.111 22.60 22.60 34.62 3.68
334 335 3.253955 CGCAACCGGAGTCCTTTG 58.746 61.111 9.46 11.34 0.00 2.77
344 345 1.209127 GAATTGACACCCGCAACCG 59.791 57.895 0.00 0.00 0.00 4.44
345 346 1.209127 CGAATTGACACCCGCAACC 59.791 57.895 0.00 0.00 0.00 3.77
346 347 1.209127 CCGAATTGACACCCGCAAC 59.791 57.895 0.00 0.00 0.00 4.17
347 348 0.535328 TTCCGAATTGACACCCGCAA 60.535 50.000 0.00 0.00 0.00 4.85
348 349 0.322098 ATTCCGAATTGACACCCGCA 60.322 50.000 0.00 0.00 0.00 5.69
349 350 0.808755 AATTCCGAATTGACACCCGC 59.191 50.000 5.53 0.00 0.00 6.13
357 358 3.241701 CCAAACGTCCAATTCCGAATTG 58.758 45.455 22.13 22.13 46.09 2.32
358 359 2.352323 GCCAAACGTCCAATTCCGAATT 60.352 45.455 0.17 0.17 0.00 2.17
359 360 1.201414 GCCAAACGTCCAATTCCGAAT 59.799 47.619 0.00 0.00 0.00 3.34
360 361 0.594110 GCCAAACGTCCAATTCCGAA 59.406 50.000 0.00 0.00 0.00 4.30
361 362 1.238625 GGCCAAACGTCCAATTCCGA 61.239 55.000 0.00 0.00 0.00 4.55
362 363 1.211709 GGCCAAACGTCCAATTCCG 59.788 57.895 0.00 0.00 0.00 4.30
363 364 1.589630 GGGCCAAACGTCCAATTCC 59.410 57.895 4.39 0.00 0.00 3.01
364 365 1.589630 GGGGCCAAACGTCCAATTC 59.410 57.895 4.39 0.00 0.00 2.17
365 366 1.911269 GGGGGCCAAACGTCCAATT 60.911 57.895 4.39 0.00 0.00 2.32
366 367 2.283604 GGGGGCCAAACGTCCAAT 60.284 61.111 4.39 0.00 0.00 3.16
367 368 3.501040 GAGGGGGCCAAACGTCCAA 62.501 63.158 4.39 0.00 0.00 3.53
368 369 3.961414 GAGGGGGCCAAACGTCCA 61.961 66.667 4.39 0.00 0.00 4.02
369 370 4.735358 GGAGGGGGCCAAACGTCC 62.735 72.222 4.39 11.13 34.90 4.79
372 373 4.778143 CTCGGAGGGGGCCAAACG 62.778 72.222 4.39 4.16 0.00 3.60
373 374 4.426313 CCTCGGAGGGGGCCAAAC 62.426 72.222 16.59 0.00 0.00 2.93
386 387 1.173444 CCTACTCCGATCACCCCTCG 61.173 65.000 0.00 0.00 35.92 4.63
387 388 0.828343 CCCTACTCCGATCACCCCTC 60.828 65.000 0.00 0.00 0.00 4.30
388 389 1.233369 CCCTACTCCGATCACCCCT 59.767 63.158 0.00 0.00 0.00 4.79
389 390 0.828343 CTCCCTACTCCGATCACCCC 60.828 65.000 0.00 0.00 0.00 4.95
390 391 1.465200 GCTCCCTACTCCGATCACCC 61.465 65.000 0.00 0.00 0.00 4.61
391 392 0.468400 AGCTCCCTACTCCGATCACC 60.468 60.000 0.00 0.00 0.00 4.02
392 393 0.671251 CAGCTCCCTACTCCGATCAC 59.329 60.000 0.00 0.00 0.00 3.06
393 394 1.109920 GCAGCTCCCTACTCCGATCA 61.110 60.000 0.00 0.00 0.00 2.92
394 395 1.109920 TGCAGCTCCCTACTCCGATC 61.110 60.000 0.00 0.00 0.00 3.69
395 396 1.075970 TGCAGCTCCCTACTCCGAT 60.076 57.895 0.00 0.00 0.00 4.18
396 397 2.052690 GTGCAGCTCCCTACTCCGA 61.053 63.158 0.00 0.00 0.00 4.55
397 398 2.496817 GTGCAGCTCCCTACTCCG 59.503 66.667 0.00 0.00 0.00 4.63
398 399 2.496817 CGTGCAGCTCCCTACTCC 59.503 66.667 0.00 0.00 0.00 3.85
399 400 2.496817 CCGTGCAGCTCCCTACTC 59.503 66.667 0.00 0.00 0.00 2.59
400 401 3.775654 GCCGTGCAGCTCCCTACT 61.776 66.667 0.00 0.00 0.00 2.57
421 422 1.136984 CTTCTCCGGTTCGACTCCG 59.863 63.158 17.86 17.86 46.49 4.63
422 423 1.249469 ACCTTCTCCGGTTCGACTCC 61.249 60.000 0.00 0.00 31.94 3.85
423 424 0.602060 AACCTTCTCCGGTTCGACTC 59.398 55.000 0.00 0.00 43.63 3.36
424 425 0.317479 CAACCTTCTCCGGTTCGACT 59.683 55.000 0.00 0.00 45.20 4.18
425 426 0.669625 CCAACCTTCTCCGGTTCGAC 60.670 60.000 0.00 0.00 45.20 4.20
426 427 0.828762 TCCAACCTTCTCCGGTTCGA 60.829 55.000 0.00 0.00 45.20 3.71
427 428 0.389948 CTCCAACCTTCTCCGGTTCG 60.390 60.000 0.00 0.00 45.20 3.95
428 429 0.036294 CCTCCAACCTTCTCCGGTTC 60.036 60.000 0.00 0.00 45.20 3.62
430 431 0.905337 CTCCTCCAACCTTCTCCGGT 60.905 60.000 0.00 0.00 39.48 5.28
431 432 0.614979 TCTCCTCCAACCTTCTCCGG 60.615 60.000 0.00 0.00 0.00 5.14
432 433 0.820871 CTCTCCTCCAACCTTCTCCG 59.179 60.000 0.00 0.00 0.00 4.63
433 434 1.199615 CCTCTCCTCCAACCTTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
434 435 2.107366 CTCCTCTCCTCCAACCTTCTC 58.893 57.143 0.00 0.00 0.00 2.87
435 436 1.273552 CCTCCTCTCCTCCAACCTTCT 60.274 57.143 0.00 0.00 0.00 2.85
436 437 1.199615 CCTCCTCTCCTCCAACCTTC 58.800 60.000 0.00 0.00 0.00 3.46
437 438 0.252927 CCCTCCTCTCCTCCAACCTT 60.253 60.000 0.00 0.00 0.00 3.50
438 439 1.156322 TCCCTCCTCTCCTCCAACCT 61.156 60.000 0.00 0.00 0.00 3.50
439 440 0.689412 CTCCCTCCTCTCCTCCAACC 60.689 65.000 0.00 0.00 0.00 3.77
440 441 0.041982 ACTCCCTCCTCTCCTCCAAC 59.958 60.000 0.00 0.00 0.00 3.77
441 442 0.041833 CACTCCCTCCTCTCCTCCAA 59.958 60.000 0.00 0.00 0.00 3.53
442 443 1.700368 CACTCCCTCCTCTCCTCCA 59.300 63.158 0.00 0.00 0.00 3.86
443 444 1.075600 CCACTCCCTCCTCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
444 445 1.075600 CCCACTCCCTCCTCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
445 446 2.641746 CCCCACTCCCTCCTCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
446 447 2.041405 CCCCACTCCCTCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
447 448 0.030603 ATTCCCCACTCCCTCCTCTC 60.031 60.000 0.00 0.00 0.00 3.20
448 449 0.423544 AATTCCCCACTCCCTCCTCT 59.576 55.000 0.00 0.00 0.00 3.69
449 450 0.548510 CAATTCCCCACTCCCTCCTC 59.451 60.000 0.00 0.00 0.00 3.71
450 451 0.921256 CCAATTCCCCACTCCCTCCT 60.921 60.000 0.00 0.00 0.00 3.69
451 452 0.919289 TCCAATTCCCCACTCCCTCC 60.919 60.000 0.00 0.00 0.00 4.30
452 453 0.999712 TTCCAATTCCCCACTCCCTC 59.000 55.000 0.00 0.00 0.00 4.30
453 454 0.704664 GTTCCAATTCCCCACTCCCT 59.295 55.000 0.00 0.00 0.00 4.20
454 455 0.679960 CGTTCCAATTCCCCACTCCC 60.680 60.000 0.00 0.00 0.00 4.30
455 456 0.037734 ACGTTCCAATTCCCCACTCC 59.962 55.000 0.00 0.00 0.00 3.85
456 457 2.629051 CTACGTTCCAATTCCCCACTC 58.371 52.381 0.00 0.00 0.00 3.51
457 458 1.280998 CCTACGTTCCAATTCCCCACT 59.719 52.381 0.00 0.00 0.00 4.00
458 459 1.746470 CCTACGTTCCAATTCCCCAC 58.254 55.000 0.00 0.00 0.00 4.61
459 460 0.034863 GCCTACGTTCCAATTCCCCA 60.035 55.000 0.00 0.00 0.00 4.96
460 461 0.034863 TGCCTACGTTCCAATTCCCC 60.035 55.000 0.00 0.00 0.00 4.81
461 462 1.379527 CTGCCTACGTTCCAATTCCC 58.620 55.000 0.00 0.00 0.00 3.97
462 463 1.065709 TCCTGCCTACGTTCCAATTCC 60.066 52.381 0.00 0.00 0.00 3.01
463 464 2.280628 CTCCTGCCTACGTTCCAATTC 58.719 52.381 0.00 0.00 0.00 2.17
464 465 1.065418 CCTCCTGCCTACGTTCCAATT 60.065 52.381 0.00 0.00 0.00 2.32
465 466 0.541863 CCTCCTGCCTACGTTCCAAT 59.458 55.000 0.00 0.00 0.00 3.16
466 467 1.550130 CCCTCCTGCCTACGTTCCAA 61.550 60.000 0.00 0.00 0.00 3.53
467 468 1.987855 CCCTCCTGCCTACGTTCCA 60.988 63.158 0.00 0.00 0.00 3.53
468 469 1.677637 CTCCCTCCTGCCTACGTTCC 61.678 65.000 0.00 0.00 0.00 3.62
469 470 0.971447 ACTCCCTCCTGCCTACGTTC 60.971 60.000 0.00 0.00 0.00 3.95
470 471 1.078710 ACTCCCTCCTGCCTACGTT 59.921 57.895 0.00 0.00 0.00 3.99
471 472 1.682684 CACTCCCTCCTGCCTACGT 60.683 63.158 0.00 0.00 0.00 3.57
472 473 1.682684 ACACTCCCTCCTGCCTACG 60.683 63.158 0.00 0.00 0.00 3.51
473 474 1.617947 CCACACTCCCTCCTGCCTAC 61.618 65.000 0.00 0.00 0.00 3.18
474 475 1.306141 CCACACTCCCTCCTGCCTA 60.306 63.158 0.00 0.00 0.00 3.93
475 476 2.608988 CCACACTCCCTCCTGCCT 60.609 66.667 0.00 0.00 0.00 4.75
476 477 3.721706 CCCACACTCCCTCCTGCC 61.722 72.222 0.00 0.00 0.00 4.85
477 478 4.416738 GCCCACACTCCCTCCTGC 62.417 72.222 0.00 0.00 0.00 4.85
478 479 3.721706 GGCCCACACTCCCTCCTG 61.722 72.222 0.00 0.00 0.00 3.86
479 480 3.507143 AAGGCCCACACTCCCTCCT 62.507 63.158 0.00 0.00 0.00 3.69
480 481 2.936032 AAGGCCCACACTCCCTCC 60.936 66.667 0.00 0.00 0.00 4.30
481 482 1.492993 AAGAAGGCCCACACTCCCTC 61.493 60.000 0.00 0.00 0.00 4.30
482 483 1.464198 AAGAAGGCCCACACTCCCT 60.464 57.895 0.00 0.00 0.00 4.20
483 484 1.002011 GAAGAAGGCCCACACTCCC 60.002 63.158 0.00 0.00 0.00 4.30
484 485 1.376037 CGAAGAAGGCCCACACTCC 60.376 63.158 0.00 0.00 0.00 3.85
485 486 0.670854 GTCGAAGAAGGCCCACACTC 60.671 60.000 0.00 0.00 39.69 3.51
486 487 1.122019 AGTCGAAGAAGGCCCACACT 61.122 55.000 0.00 0.00 39.69 3.55
487 488 0.951040 CAGTCGAAGAAGGCCCACAC 60.951 60.000 0.00 0.00 39.69 3.82
488 489 1.371183 CAGTCGAAGAAGGCCCACA 59.629 57.895 0.00 0.00 39.69 4.17
489 490 1.376037 CCAGTCGAAGAAGGCCCAC 60.376 63.158 0.00 0.00 39.69 4.61
490 491 2.592993 CCCAGTCGAAGAAGGCCCA 61.593 63.158 0.00 0.00 39.69 5.36
491 492 1.262640 TACCCAGTCGAAGAAGGCCC 61.263 60.000 0.00 0.00 39.69 5.80
492 493 0.175989 CTACCCAGTCGAAGAAGGCC 59.824 60.000 0.00 0.00 39.69 5.19
559 560 3.532155 GCGCGAGAGGAGGTGGAT 61.532 66.667 12.10 0.00 0.00 3.41
613 614 1.416813 CTCGAGCAGCCGAACATGTC 61.417 60.000 0.00 0.00 38.17 3.06
614 615 1.446792 CTCGAGCAGCCGAACATGT 60.447 57.895 0.00 0.00 38.17 3.21
631 632 4.827087 CATGTCCTCCGCGCTGCT 62.827 66.667 5.56 0.00 0.00 4.24
713 714 0.457853 CGCGAAGTTGTAGCAGGCTA 60.458 55.000 0.00 0.00 0.00 3.93
714 715 1.738099 CGCGAAGTTGTAGCAGGCT 60.738 57.895 0.00 0.00 0.00 4.58
761 762 4.122670 CCCCCTCCATCTCCCCCA 62.123 72.222 0.00 0.00 0.00 4.96
780 781 4.814294 CGGACCAGCTGGGCGTAC 62.814 72.222 35.42 19.85 47.00 3.67
816 817 0.607112 TGGCGTTGTACGGATTGGTA 59.393 50.000 1.14 0.00 42.82 3.25
822 823 2.963548 TAATCATGGCGTTGTACGGA 57.036 45.000 1.14 0.00 42.82 4.69
823 824 2.933906 ACTTAATCATGGCGTTGTACGG 59.066 45.455 1.14 0.00 42.82 4.02
846 847 2.068277 GATCGCCCTCCTTGCAATGC 62.068 60.000 0.00 0.00 0.00 3.56
847 848 0.465097 AGATCGCCCTCCTTGCAATG 60.465 55.000 0.00 0.00 0.00 2.82
849 850 1.221840 GAGATCGCCCTCCTTGCAA 59.778 57.895 0.00 0.00 0.00 4.08
864 865 4.680237 CGGTGTGCCTTGGCGAGA 62.680 66.667 2.43 0.00 0.00 4.04
876 877 1.026718 GCAGCCTGAAATAGCGGTGT 61.027 55.000 0.00 0.00 31.74 4.16
882 883 1.022735 CCAGCAGCAGCCTGAAATAG 58.977 55.000 0.00 0.00 41.77 1.73
885 886 1.303074 CTCCAGCAGCAGCCTGAAA 60.303 57.895 0.00 0.00 41.77 2.69
890 891 3.054503 CACACTCCAGCAGCAGCC 61.055 66.667 0.00 0.00 43.56 4.85
910 911 0.108520 GTGAACGTATCCGGCTCCAA 60.109 55.000 0.00 0.00 38.78 3.53
921 922 6.203808 AGAGCATTACTACATGTGAACGTA 57.796 37.500 9.11 2.05 0.00 3.57
935 936 8.664211 ACAGTAGCCTAAAATTAGAGCATTAC 57.336 34.615 12.82 8.99 32.74 1.89
936 937 7.652105 CGACAGTAGCCTAAAATTAGAGCATTA 59.348 37.037 12.82 0.69 32.74 1.90
937 938 6.480320 CGACAGTAGCCTAAAATTAGAGCATT 59.520 38.462 12.82 1.35 32.74 3.56
939 940 5.348986 CGACAGTAGCCTAAAATTAGAGCA 58.651 41.667 12.82 1.86 32.74 4.26
942 943 6.406624 CCTTCCGACAGTAGCCTAAAATTAGA 60.407 42.308 1.75 0.00 32.47 2.10
945 946 4.514401 CCTTCCGACAGTAGCCTAAAATT 58.486 43.478 0.00 0.00 0.00 1.82
946 947 3.118371 CCCTTCCGACAGTAGCCTAAAAT 60.118 47.826 0.00 0.00 0.00 1.82
948 949 1.829222 CCCTTCCGACAGTAGCCTAAA 59.171 52.381 0.00 0.00 0.00 1.85
949 950 1.272872 ACCCTTCCGACAGTAGCCTAA 60.273 52.381 0.00 0.00 0.00 2.69
951 952 1.078710 ACCCTTCCGACAGTAGCCT 59.921 57.895 0.00 0.00 0.00 4.58
954 955 0.531200 GGTCACCCTTCCGACAGTAG 59.469 60.000 0.00 0.00 33.66 2.57
960 961 1.609501 CCTCAGGTCACCCTTCCGA 60.610 63.158 0.00 0.00 39.89 4.55
965 966 2.452114 CCCTCCTCAGGTCACCCT 59.548 66.667 0.00 0.00 44.02 4.34
969 970 2.284921 CAGGCCCTCCTCAGGTCA 60.285 66.667 0.00 0.00 41.93 4.02
970 971 3.791586 GCAGGCCCTCCTCAGGTC 61.792 72.222 0.00 0.00 41.93 3.85
1013 1014 2.962859 ACTCATTTCTTTGGCAACCCT 58.037 42.857 0.00 0.00 0.00 4.34
1014 1015 3.826729 AGTACTCATTTCTTTGGCAACCC 59.173 43.478 0.00 0.00 0.00 4.11
1023 1024 6.875972 ATGGTGTAGGAGTACTCATTTCTT 57.124 37.500 23.91 5.11 0.00 2.52
1073 1074 1.072331 CAAGTGCCTCCCTTACACACT 59.928 52.381 0.00 0.00 43.14 3.55
1075 1076 0.250727 GCAAGTGCCTCCCTTACACA 60.251 55.000 0.00 0.00 36.76 3.72
1094 1095 1.202110 GCCTCATCATCAACAACAGCG 60.202 52.381 0.00 0.00 0.00 5.18
1101 1102 1.605710 CAATCCCGCCTCATCATCAAC 59.394 52.381 0.00 0.00 0.00 3.18
1116 1117 2.284515 AATCCGGGGAGCACCAATCC 62.285 60.000 0.00 0.00 42.91 3.01
1120 1121 3.781307 CGAATCCGGGGAGCACCA 61.781 66.667 0.00 0.00 42.91 4.17
1132 1133 4.084328 GCTCCTAACATATGTGTGCGAATC 60.084 45.833 9.63 0.00 38.92 2.52
1137 1138 4.310769 CCTAGCTCCTAACATATGTGTGC 58.689 47.826 9.63 9.55 38.92 4.57
1250 1251 2.790791 CGCCGCCATCTTCCTCTCT 61.791 63.158 0.00 0.00 0.00 3.10
1268 1269 2.256461 CTTGCCTCTTGCGTTGCC 59.744 61.111 0.00 0.00 45.60 4.52
1482 1484 2.354403 CCCTTTAGAACCGATTCGTGGT 60.354 50.000 5.20 0.00 42.98 4.16
1495 1497 1.497309 CCTGCCACCACCCCTTTAGA 61.497 60.000 0.00 0.00 0.00 2.10
1552 1554 1.336440 CGGTTTTGTGCCATGAACAGA 59.664 47.619 0.00 0.00 0.00 3.41
1554 1556 0.387202 CCGGTTTTGTGCCATGAACA 59.613 50.000 0.00 0.00 0.00 3.18
1702 1717 0.462937 TGAAATGGCGATACACCGGG 60.463 55.000 6.32 0.00 0.00 5.73
1705 1720 4.434713 AAAACTGAAATGGCGATACACC 57.565 40.909 0.00 0.00 0.00 4.16
1924 1971 1.814793 TGGATGCGGATTTTCGTTCA 58.185 45.000 0.00 0.00 0.00 3.18
1926 1973 3.866883 AATTGGATGCGGATTTTCGTT 57.133 38.095 0.00 0.00 0.00 3.85
2303 2481 5.241506 TGTTTTCCTGAGAAATGTAAGCTGG 59.758 40.000 0.00 0.00 41.55 4.85
2316 2494 3.378112 TCTGCACTTGTTGTTTTCCTGAG 59.622 43.478 0.00 0.00 0.00 3.35
2557 3249 5.939883 ACCAACCGGTACTAAAGGTATTTTC 59.060 40.000 8.00 0.00 46.71 2.29
2609 3301 2.260434 GAGCTCACGCCGTGGTAA 59.740 61.111 18.32 0.00 36.60 2.85
2714 3419 2.046285 CAAGCGGCACTAAAGGGGG 61.046 63.158 1.45 0.00 0.00 5.40
2715 3420 2.700773 GCAAGCGGCACTAAAGGGG 61.701 63.158 1.45 0.00 43.97 4.79
2716 3421 2.877691 GCAAGCGGCACTAAAGGG 59.122 61.111 1.45 0.00 43.97 3.95
2725 3430 4.410743 GCCAGTTCTGCAAGCGGC 62.411 66.667 0.00 0.00 45.13 6.53
2726 3431 2.979676 TGCCAGTTCTGCAAGCGG 60.980 61.111 0.00 0.00 35.40 5.52
2727 3432 0.950555 TAGTGCCAGTTCTGCAAGCG 60.951 55.000 0.00 0.00 41.06 4.68
2915 7169 2.108362 CCGGTTTAGCTAGGCCCG 59.892 66.667 16.53 16.53 38.39 6.13
3028 7282 3.343617 ACATCATAACACTTGGAACCGG 58.656 45.455 0.00 0.00 0.00 5.28
3116 7370 9.498307 CACTTTTGTAAGACGTTTTAGACATTT 57.502 29.630 0.00 0.00 35.30 2.32
3146 7400 4.164796 TGATCATTGCATTGTACTCCCTCT 59.835 41.667 8.36 0.00 0.00 3.69
3240 7494 0.839277 ATGTCCAATCATCTGGGCGA 59.161 50.000 0.00 0.00 44.59 5.54
3266 7520 1.747355 CACAGAGGCCATGGATCAAAC 59.253 52.381 18.40 0.00 0.00 2.93
3287 7541 2.427453 TCAGCTTCGTCTATCTTCCCAC 59.573 50.000 0.00 0.00 0.00 4.61
3300 7554 5.812642 ACTATCCAGTAATTGTTCAGCTTCG 59.187 40.000 0.00 0.00 31.45 3.79
3451 7705 9.859427 CAACTTTCCATACACATTTACATGAAT 57.141 29.630 0.00 0.00 34.11 2.57
3454 7708 9.507280 GATCAACTTTCCATACACATTTACATG 57.493 33.333 0.00 0.00 36.34 3.21
3580 7834 5.688807 AGTCTTGCAATAGCCATCACTAAT 58.311 37.500 0.00 0.00 41.13 1.73
3604 7858 1.247567 AGTGCAAAATCCACCTTCCG 58.752 50.000 0.00 0.00 33.75 4.30
3660 7914 4.998051 AGTTGTAGGTCCATGAATTTGGT 58.002 39.130 0.00 0.00 38.01 3.67
3823 8077 9.743057 CATTTGAAATAACCCGAAAGCATTATA 57.257 29.630 0.00 0.00 0.00 0.98
3835 8089 5.596836 TGCTCCATCATTTGAAATAACCC 57.403 39.130 0.00 0.00 0.00 4.11
3844 8098 6.477688 GTCAAACCATTATGCTCCATCATTTG 59.522 38.462 0.00 0.00 0.00 2.32
3926 8180 7.150783 ACAAGAAATGAATAAGCTTCCTCAC 57.849 36.000 0.00 0.00 0.00 3.51
4186 8440 8.181487 TCGTTCATTAGAGTTGTATAAGCAAC 57.819 34.615 1.16 1.16 46.49 4.17
4206 8460 2.675348 CCCTTCTCTGAGCATTTCGTTC 59.325 50.000 0.00 0.00 0.00 3.95
4271 8525 2.558359 GTTGCACTTGGCTTATGACCTT 59.442 45.455 0.00 0.00 45.15 3.50
4346 8600 8.602424 TCTCCATTTCCACTATTAAGTTCTCAA 58.398 33.333 0.00 0.00 31.97 3.02
4422 8676 7.122715 GGTTAATATATCCCATATGCCCACAA 58.877 38.462 0.00 0.00 0.00 3.33
4450 8704 3.599343 TGCGCTTCAGAGTATCAAATGT 58.401 40.909 9.73 0.00 37.82 2.71
4680 8934 1.827681 TAATACGGCTGGCTTTGCAA 58.172 45.000 0.00 0.00 0.00 4.08
4729 8983 6.256975 TCATTGGGTGTTATATCTTTTCGACG 59.743 38.462 0.00 0.00 0.00 5.12
4732 8986 8.208718 TCTTCATTGGGTGTTATATCTTTTCG 57.791 34.615 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.