Multiple sequence alignment - TraesCS4B01G342900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G342900 chr4B 100.000 3087 0 0 1 3087 636781084 636784170 0.000000e+00 5701.0
1 TraesCS4B01G342900 chr5A 91.639 1220 56 16 966 2179 675955944 675957123 0.000000e+00 1646.0
2 TraesCS4B01G342900 chr5A 88.332 917 70 23 2189 3087 675958121 675959018 0.000000e+00 1066.0
3 TraesCS4B01G342900 chr5A 89.177 231 13 10 365 592 675954316 675954537 8.430000e-71 278.0
4 TraesCS4B01G342900 chr5A 83.333 240 9 11 594 819 675954591 675954813 3.140000e-45 193.0
5 TraesCS4B01G342900 chr5A 91.954 87 3 4 3002 3087 675959758 675959841 5.410000e-23 119.0
6 TraesCS4B01G342900 chr2B 77.857 280 54 7 1 274 704289338 704289615 1.900000e-37 167.0
7 TraesCS4B01G342900 chr2B 79.000 100 18 3 171 268 549555256 549555354 7.150000e-07 65.8
8 TraesCS4B01G342900 chr3D 86.861 137 16 2 2189 2325 613714127 613713993 5.330000e-33 152.0
9 TraesCS4B01G342900 chr2D 76.140 285 57 10 1 278 584537577 584537857 4.150000e-29 139.0
10 TraesCS4B01G342900 chr2A 74.009 227 47 7 18 235 718719439 718719662 7.090000e-12 82.4
11 TraesCS4B01G342900 chr5B 100.000 29 0 0 218 246 35534882 35534854 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G342900 chr4B 636781084 636784170 3086 False 5701.0 5701 100.000 1 3087 1 chr4B.!!$F1 3086
1 TraesCS4B01G342900 chr5A 675954316 675959841 5525 False 660.4 1646 88.887 365 3087 5 chr5A.!!$F1 2722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.035152 TCACCGCTTCAATGGCAGAT 60.035 50.0 0.0 0.0 0.0 2.9 F
387 388 0.035598 CACACACCCCCATTCGTGTA 59.964 55.0 0.0 0.0 41.2 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 2460 0.035458 CCCAAAGCTCGTCTCTTGGT 59.965 55.0 10.85 0.00 0.00 3.67 R
2270 4354 0.106819 ACAGGCTCAATCTGATGGCC 60.107 55.0 16.59 16.59 42.74 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.373116 GGCCGACTCACCGCTTCA 62.373 66.667 0.00 0.00 0.00 3.02
46 47 2.357034 GCCGACTCACCGCTTCAA 60.357 61.111 0.00 0.00 0.00 2.69
47 48 1.741770 GCCGACTCACCGCTTCAAT 60.742 57.895 0.00 0.00 0.00 2.57
48 49 1.970917 GCCGACTCACCGCTTCAATG 61.971 60.000 0.00 0.00 0.00 2.82
49 50 1.361668 CCGACTCACCGCTTCAATGG 61.362 60.000 0.00 0.00 0.00 3.16
50 51 1.796796 GACTCACCGCTTCAATGGC 59.203 57.895 0.00 0.00 0.00 4.40
51 52 0.955428 GACTCACCGCTTCAATGGCA 60.955 55.000 0.00 0.00 0.00 4.92
52 53 0.957395 ACTCACCGCTTCAATGGCAG 60.957 55.000 0.00 0.00 0.00 4.85
53 54 0.674581 CTCACCGCTTCAATGGCAGA 60.675 55.000 0.00 0.00 0.00 4.26
54 55 0.035152 TCACCGCTTCAATGGCAGAT 60.035 50.000 0.00 0.00 0.00 2.90
55 56 0.099968 CACCGCTTCAATGGCAGATG 59.900 55.000 0.00 0.00 0.00 2.90
56 57 1.065273 CCGCTTCAATGGCAGATGC 59.935 57.895 0.00 0.00 41.14 3.91
57 58 1.659622 CCGCTTCAATGGCAGATGCA 61.660 55.000 7.19 0.00 44.36 3.96
58 59 0.248498 CGCTTCAATGGCAGATGCAG 60.248 55.000 7.19 6.83 44.36 4.41
59 60 0.527817 GCTTCAATGGCAGATGCAGC 60.528 55.000 10.79 10.79 44.36 5.25
60 61 0.248498 CTTCAATGGCAGATGCAGCG 60.248 55.000 7.19 0.00 44.36 5.18
61 62 0.677414 TTCAATGGCAGATGCAGCGA 60.677 50.000 7.19 0.00 44.36 4.93
62 63 0.677414 TCAATGGCAGATGCAGCGAA 60.677 50.000 7.19 0.00 44.36 4.70
63 64 0.171679 CAATGGCAGATGCAGCGAAA 59.828 50.000 7.19 0.00 44.36 3.46
64 65 0.171903 AATGGCAGATGCAGCGAAAC 59.828 50.000 7.19 0.00 44.36 2.78
65 66 1.985447 ATGGCAGATGCAGCGAAACG 61.985 55.000 7.19 0.00 44.36 3.60
66 67 2.680913 GGCAGATGCAGCGAAACGT 61.681 57.895 7.19 0.00 44.36 3.99
67 68 1.207593 GCAGATGCAGCGAAACGTT 59.792 52.632 0.00 0.00 41.59 3.99
68 69 1.061799 GCAGATGCAGCGAAACGTTG 61.062 55.000 0.00 3.87 40.80 4.10
73 74 2.127758 CAGCGAAACGTTGCGTCC 60.128 61.111 28.33 13.84 39.99 4.79
74 75 2.586635 AGCGAAACGTTGCGTCCA 60.587 55.556 28.33 0.00 39.99 4.02
75 76 2.424640 GCGAAACGTTGCGTCCAC 60.425 61.111 28.33 9.31 39.99 4.02
76 77 2.247267 CGAAACGTTGCGTCCACC 59.753 61.111 20.75 0.00 39.99 4.61
77 78 2.241880 CGAAACGTTGCGTCCACCT 61.242 57.895 20.75 0.00 39.99 4.00
78 79 1.768112 CGAAACGTTGCGTCCACCTT 61.768 55.000 20.75 0.00 39.99 3.50
79 80 0.316689 GAAACGTTGCGTCCACCTTG 60.317 55.000 0.00 0.00 39.99 3.61
80 81 0.745128 AAACGTTGCGTCCACCTTGA 60.745 50.000 0.00 0.00 39.99 3.02
81 82 1.157870 AACGTTGCGTCCACCTTGAG 61.158 55.000 0.00 0.00 39.99 3.02
82 83 2.946762 GTTGCGTCCACCTTGAGC 59.053 61.111 0.00 0.00 0.00 4.26
83 84 2.281484 TTGCGTCCACCTTGAGCC 60.281 61.111 0.00 0.00 0.00 4.70
84 85 4.680237 TGCGTCCACCTTGAGCCG 62.680 66.667 0.00 0.00 0.00 5.52
85 86 4.681978 GCGTCCACCTTGAGCCGT 62.682 66.667 0.00 0.00 0.00 5.68
86 87 2.432628 CGTCCACCTTGAGCCGTC 60.433 66.667 0.00 0.00 0.00 4.79
87 88 2.932234 CGTCCACCTTGAGCCGTCT 61.932 63.158 0.00 0.00 0.00 4.18
88 89 1.371558 GTCCACCTTGAGCCGTCTT 59.628 57.895 0.00 0.00 0.00 3.01
89 90 0.670854 GTCCACCTTGAGCCGTCTTC 60.671 60.000 0.00 0.00 0.00 2.87
90 91 1.118965 TCCACCTTGAGCCGTCTTCA 61.119 55.000 0.00 0.00 0.00 3.02
91 92 0.250295 CCACCTTGAGCCGTCTTCAA 60.250 55.000 0.00 0.00 0.00 2.69
92 93 1.611673 CCACCTTGAGCCGTCTTCAAT 60.612 52.381 0.00 0.00 0.00 2.57
93 94 2.354704 CCACCTTGAGCCGTCTTCAATA 60.355 50.000 0.00 0.00 0.00 1.90
94 95 3.535561 CACCTTGAGCCGTCTTCAATAT 58.464 45.455 0.00 0.00 0.00 1.28
95 96 3.310774 CACCTTGAGCCGTCTTCAATATG 59.689 47.826 0.00 0.00 0.00 1.78
96 97 2.874701 CCTTGAGCCGTCTTCAATATGG 59.125 50.000 0.00 0.00 0.00 2.74
97 98 3.432186 CCTTGAGCCGTCTTCAATATGGA 60.432 47.826 0.00 0.00 0.00 3.41
98 99 3.459232 TGAGCCGTCTTCAATATGGAG 57.541 47.619 0.00 0.00 0.00 3.86
99 100 2.139118 GAGCCGTCTTCAATATGGAGC 58.861 52.381 0.00 0.00 0.00 4.70
100 101 0.861837 GCCGTCTTCAATATGGAGCG 59.138 55.000 0.00 0.00 0.00 5.03
101 102 1.502231 CCGTCTTCAATATGGAGCGG 58.498 55.000 6.98 6.98 0.00 5.52
102 103 1.502231 CGTCTTCAATATGGAGCGGG 58.498 55.000 0.00 0.00 0.00 6.13
103 104 1.230324 GTCTTCAATATGGAGCGGGC 58.770 55.000 0.00 0.00 0.00 6.13
104 105 1.131638 TCTTCAATATGGAGCGGGCT 58.868 50.000 0.00 0.00 0.00 5.19
105 106 1.490490 TCTTCAATATGGAGCGGGCTT 59.510 47.619 0.00 0.00 0.00 4.35
106 107 2.092429 TCTTCAATATGGAGCGGGCTTT 60.092 45.455 0.00 0.00 0.00 3.51
107 108 2.435372 TCAATATGGAGCGGGCTTTT 57.565 45.000 0.00 0.00 0.00 2.27
108 109 2.733956 TCAATATGGAGCGGGCTTTTT 58.266 42.857 0.00 0.00 0.00 1.94
109 110 3.892284 TCAATATGGAGCGGGCTTTTTA 58.108 40.909 0.00 0.00 0.00 1.52
110 111 3.630312 TCAATATGGAGCGGGCTTTTTAC 59.370 43.478 0.00 0.00 0.00 2.01
111 112 2.791347 TATGGAGCGGGCTTTTTACA 57.209 45.000 0.00 0.00 0.00 2.41
112 113 1.463674 ATGGAGCGGGCTTTTTACAG 58.536 50.000 0.00 0.00 0.00 2.74
113 114 0.109723 TGGAGCGGGCTTTTTACAGT 59.890 50.000 0.00 0.00 0.00 3.55
114 115 0.521735 GGAGCGGGCTTTTTACAGTG 59.478 55.000 0.00 0.00 0.00 3.66
115 116 0.521735 GAGCGGGCTTTTTACAGTGG 59.478 55.000 0.00 0.00 0.00 4.00
116 117 1.080772 GCGGGCTTTTTACAGTGGC 60.081 57.895 0.00 0.00 0.00 5.01
117 118 1.801309 GCGGGCTTTTTACAGTGGCA 61.801 55.000 0.00 0.00 0.00 4.92
118 119 0.887933 CGGGCTTTTTACAGTGGCAT 59.112 50.000 0.00 0.00 0.00 4.40
119 120 1.402720 CGGGCTTTTTACAGTGGCATG 60.403 52.381 0.00 0.00 0.00 4.06
120 121 1.892474 GGGCTTTTTACAGTGGCATGA 59.108 47.619 0.00 0.00 0.00 3.07
121 122 2.298729 GGGCTTTTTACAGTGGCATGAA 59.701 45.455 0.00 0.00 0.00 2.57
122 123 3.055891 GGGCTTTTTACAGTGGCATGAAT 60.056 43.478 0.00 0.00 0.00 2.57
123 124 4.159506 GGGCTTTTTACAGTGGCATGAATA 59.840 41.667 0.00 0.00 0.00 1.75
124 125 5.102313 GGCTTTTTACAGTGGCATGAATAC 58.898 41.667 0.00 0.00 0.00 1.89
125 126 4.793216 GCTTTTTACAGTGGCATGAATACG 59.207 41.667 0.00 0.00 0.00 3.06
126 127 4.955925 TTTTACAGTGGCATGAATACGG 57.044 40.909 0.00 0.00 0.00 4.02
127 128 2.613026 TACAGTGGCATGAATACGGG 57.387 50.000 0.00 0.00 0.00 5.28
128 129 0.748005 ACAGTGGCATGAATACGGGC 60.748 55.000 0.00 0.00 0.00 6.13
129 130 0.747644 CAGTGGCATGAATACGGGCA 60.748 55.000 0.00 0.00 34.48 5.36
130 131 0.464373 AGTGGCATGAATACGGGCAG 60.464 55.000 0.00 0.00 37.80 4.85
131 132 1.823470 TGGCATGAATACGGGCAGC 60.823 57.895 0.00 0.00 32.91 5.25
132 133 1.526917 GGCATGAATACGGGCAGCT 60.527 57.895 0.00 0.00 0.00 4.24
133 134 0.250295 GGCATGAATACGGGCAGCTA 60.250 55.000 0.00 0.00 0.00 3.32
134 135 1.151668 GCATGAATACGGGCAGCTAG 58.848 55.000 0.00 0.00 0.00 3.42
135 136 1.151668 CATGAATACGGGCAGCTAGC 58.848 55.000 6.62 6.62 44.65 3.42
167 168 3.350612 CGTGCGGGCGAGGAAAAA 61.351 61.111 0.00 0.00 0.00 1.94
168 169 2.561373 GTGCGGGCGAGGAAAAAG 59.439 61.111 0.00 0.00 0.00 2.27
169 170 1.964373 GTGCGGGCGAGGAAAAAGA 60.964 57.895 0.00 0.00 0.00 2.52
170 171 1.671054 TGCGGGCGAGGAAAAAGAG 60.671 57.895 0.00 0.00 0.00 2.85
171 172 2.399356 GCGGGCGAGGAAAAAGAGG 61.399 63.158 0.00 0.00 0.00 3.69
172 173 1.003718 CGGGCGAGGAAAAAGAGGT 60.004 57.895 0.00 0.00 0.00 3.85
173 174 0.605589 CGGGCGAGGAAAAAGAGGTT 60.606 55.000 0.00 0.00 0.00 3.50
174 175 1.617322 GGGCGAGGAAAAAGAGGTTT 58.383 50.000 0.00 0.00 0.00 3.27
175 176 1.269723 GGGCGAGGAAAAAGAGGTTTG 59.730 52.381 0.00 0.00 0.00 2.93
176 177 1.269723 GGCGAGGAAAAAGAGGTTTGG 59.730 52.381 0.00 0.00 0.00 3.28
177 178 1.269723 GCGAGGAAAAAGAGGTTTGGG 59.730 52.381 0.00 0.00 0.00 4.12
178 179 2.583143 CGAGGAAAAAGAGGTTTGGGT 58.417 47.619 0.00 0.00 0.00 4.51
179 180 2.293399 CGAGGAAAAAGAGGTTTGGGTG 59.707 50.000 0.00 0.00 0.00 4.61
180 181 2.628178 GAGGAAAAAGAGGTTTGGGTGG 59.372 50.000 0.00 0.00 0.00 4.61
181 182 2.246327 AGGAAAAAGAGGTTTGGGTGGA 59.754 45.455 0.00 0.00 0.00 4.02
182 183 2.364324 GGAAAAAGAGGTTTGGGTGGAC 59.636 50.000 0.00 0.00 0.00 4.02
183 184 2.082140 AAAAGAGGTTTGGGTGGACC 57.918 50.000 0.00 0.00 40.81 4.46
219 220 4.477975 CACGAGAGCGACCGGGAC 62.478 72.222 6.32 0.00 41.64 4.46
220 221 4.719106 ACGAGAGCGACCGGGACT 62.719 66.667 6.32 0.00 41.64 3.85
221 222 3.878519 CGAGAGCGACCGGGACTC 61.879 72.222 6.32 9.59 40.82 3.36
222 223 3.519930 GAGAGCGACCGGGACTCC 61.520 72.222 6.32 0.27 0.00 3.85
232 233 4.035102 GGGACTCCCGCAAAGCCT 62.035 66.667 0.00 0.00 32.13 4.58
233 234 2.436824 GGACTCCCGCAAAGCCTC 60.437 66.667 0.00 0.00 0.00 4.70
234 235 2.436824 GACTCCCGCAAAGCCTCC 60.437 66.667 0.00 0.00 0.00 4.30
235 236 2.930562 ACTCCCGCAAAGCCTCCT 60.931 61.111 0.00 0.00 0.00 3.69
236 237 1.612442 ACTCCCGCAAAGCCTCCTA 60.612 57.895 0.00 0.00 0.00 2.94
237 238 1.198759 ACTCCCGCAAAGCCTCCTAA 61.199 55.000 0.00 0.00 0.00 2.69
238 239 0.181350 CTCCCGCAAAGCCTCCTAAT 59.819 55.000 0.00 0.00 0.00 1.73
239 240 0.623723 TCCCGCAAAGCCTCCTAATT 59.376 50.000 0.00 0.00 0.00 1.40
240 241 1.005450 TCCCGCAAAGCCTCCTAATTT 59.995 47.619 0.00 0.00 0.00 1.82
241 242 1.134946 CCCGCAAAGCCTCCTAATTTG 59.865 52.381 0.00 0.00 37.07 2.32
242 243 1.818674 CCGCAAAGCCTCCTAATTTGT 59.181 47.619 0.00 0.00 36.52 2.83
243 244 2.159379 CCGCAAAGCCTCCTAATTTGTC 60.159 50.000 0.00 0.00 36.52 3.18
244 245 2.749621 CGCAAAGCCTCCTAATTTGTCT 59.250 45.455 0.00 0.00 36.52 3.41
245 246 3.191371 CGCAAAGCCTCCTAATTTGTCTT 59.809 43.478 0.00 0.00 36.52 3.01
246 247 4.394920 CGCAAAGCCTCCTAATTTGTCTTA 59.605 41.667 0.00 0.00 36.52 2.10
247 248 5.106317 CGCAAAGCCTCCTAATTTGTCTTAA 60.106 40.000 0.00 0.00 36.52 1.85
248 249 6.404734 CGCAAAGCCTCCTAATTTGTCTTAAT 60.405 38.462 0.00 0.00 36.52 1.40
249 250 7.323420 GCAAAGCCTCCTAATTTGTCTTAATT 58.677 34.615 0.00 0.00 36.52 1.40
250 251 7.819415 GCAAAGCCTCCTAATTTGTCTTAATTT 59.181 33.333 0.00 0.00 36.52 1.82
251 252 9.710900 CAAAGCCTCCTAATTTGTCTTAATTTT 57.289 29.630 0.00 0.00 0.00 1.82
252 253 9.710900 AAAGCCTCCTAATTTGTCTTAATTTTG 57.289 29.630 0.00 0.00 0.00 2.44
253 254 7.323420 AGCCTCCTAATTTGTCTTAATTTTGC 58.677 34.615 0.00 0.00 0.00 3.68
254 255 6.253512 GCCTCCTAATTTGTCTTAATTTTGCG 59.746 38.462 0.00 0.00 0.00 4.85
255 256 6.751888 CCTCCTAATTTGTCTTAATTTTGCGG 59.248 38.462 0.00 0.00 0.00 5.69
256 257 6.626302 TCCTAATTTGTCTTAATTTTGCGGG 58.374 36.000 0.00 0.00 0.00 6.13
257 258 6.434652 TCCTAATTTGTCTTAATTTTGCGGGA 59.565 34.615 0.00 0.00 0.00 5.14
258 259 6.751888 CCTAATTTGTCTTAATTTTGCGGGAG 59.248 38.462 0.00 0.00 0.00 4.30
259 260 5.975693 ATTTGTCTTAATTTTGCGGGAGA 57.024 34.783 0.00 0.00 0.00 3.71
260 261 5.776173 TTTGTCTTAATTTTGCGGGAGAA 57.224 34.783 0.00 0.00 0.00 2.87
261 262 5.776173 TTGTCTTAATTTTGCGGGAGAAA 57.224 34.783 0.00 0.00 0.00 2.52
262 263 5.371115 TGTCTTAATTTTGCGGGAGAAAG 57.629 39.130 0.00 0.00 0.00 2.62
263 264 4.825085 TGTCTTAATTTTGCGGGAGAAAGT 59.175 37.500 0.00 0.00 0.00 2.66
264 265 5.998981 TGTCTTAATTTTGCGGGAGAAAGTA 59.001 36.000 0.00 0.00 0.00 2.24
265 266 6.072893 TGTCTTAATTTTGCGGGAGAAAGTAC 60.073 38.462 0.00 0.00 0.00 2.73
266 267 3.824414 AATTTTGCGGGAGAAAGTACG 57.176 42.857 0.00 0.00 0.00 3.67
267 268 2.243602 TTTTGCGGGAGAAAGTACGT 57.756 45.000 0.00 0.00 0.00 3.57
268 269 1.504359 TTTGCGGGAGAAAGTACGTG 58.496 50.000 0.00 0.00 0.00 4.49
269 270 0.947180 TTGCGGGAGAAAGTACGTGC 60.947 55.000 0.00 0.00 0.00 5.34
270 271 2.442188 GCGGGAGAAAGTACGTGCG 61.442 63.158 0.00 0.00 0.00 5.34
271 272 1.804326 CGGGAGAAAGTACGTGCGG 60.804 63.158 0.00 0.00 0.00 5.69
272 273 1.588082 GGGAGAAAGTACGTGCGGA 59.412 57.895 0.00 0.00 0.00 5.54
273 274 0.735287 GGGAGAAAGTACGTGCGGAC 60.735 60.000 0.00 0.00 0.00 4.79
274 275 0.735287 GGAGAAAGTACGTGCGGACC 60.735 60.000 0.00 0.00 0.00 4.46
275 276 0.038892 GAGAAAGTACGTGCGGACCA 60.039 55.000 0.00 0.00 0.00 4.02
276 277 0.319297 AGAAAGTACGTGCGGACCAC 60.319 55.000 0.00 0.00 41.15 4.16
283 284 3.650369 GTGCGGACCACGTTGAAT 58.350 55.556 0.00 0.00 46.52 2.57
284 285 1.206578 GTGCGGACCACGTTGAATG 59.793 57.895 0.00 0.00 46.52 2.67
285 286 1.963855 TGCGGACCACGTTGAATGG 60.964 57.895 0.00 0.00 46.52 3.16
286 287 1.669760 GCGGACCACGTTGAATGGA 60.670 57.895 0.00 0.00 46.52 3.41
287 288 1.908066 GCGGACCACGTTGAATGGAC 61.908 60.000 0.00 0.00 46.52 4.02
288 289 1.296056 CGGACCACGTTGAATGGACC 61.296 60.000 0.00 0.06 45.37 4.46
289 290 1.296056 GGACCACGTTGAATGGACCG 61.296 60.000 0.00 0.00 41.24 4.79
290 291 1.908066 GACCACGTTGAATGGACCGC 61.908 60.000 0.00 0.00 39.87 5.68
291 292 1.963855 CCACGTTGAATGGACCGCA 60.964 57.895 0.00 0.00 39.87 5.69
292 293 1.305219 CCACGTTGAATGGACCGCAT 61.305 55.000 0.00 0.00 39.87 4.73
293 294 0.521291 CACGTTGAATGGACCGCATT 59.479 50.000 0.00 0.00 0.00 3.56
294 295 1.735018 CACGTTGAATGGACCGCATTA 59.265 47.619 0.00 0.00 0.00 1.90
295 296 2.006888 ACGTTGAATGGACCGCATTAG 58.993 47.619 0.00 0.00 0.00 1.73
296 297 2.276201 CGTTGAATGGACCGCATTAGA 58.724 47.619 0.00 0.00 0.00 2.10
297 298 2.872245 CGTTGAATGGACCGCATTAGAT 59.128 45.455 0.00 0.00 0.00 1.98
298 299 3.303329 CGTTGAATGGACCGCATTAGATG 60.303 47.826 0.00 0.00 0.00 2.90
299 300 2.849942 TGAATGGACCGCATTAGATGG 58.150 47.619 0.00 0.00 0.00 3.51
300 301 1.537202 GAATGGACCGCATTAGATGGC 59.463 52.381 0.00 0.00 0.00 4.40
301 302 0.767375 ATGGACCGCATTAGATGGCT 59.233 50.000 0.00 0.00 0.00 4.75
302 303 0.546122 TGGACCGCATTAGATGGCTT 59.454 50.000 0.00 0.00 0.00 4.35
303 304 1.064758 TGGACCGCATTAGATGGCTTT 60.065 47.619 0.00 0.00 0.00 3.51
304 305 1.604278 GGACCGCATTAGATGGCTTTC 59.396 52.381 0.00 0.00 0.00 2.62
305 306 1.604278 GACCGCATTAGATGGCTTTCC 59.396 52.381 0.00 0.00 0.00 3.13
319 320 4.608269 TGGCTTTCCATATGATGTTTGGA 58.392 39.130 3.65 0.00 37.47 3.53
320 321 4.402155 TGGCTTTCCATATGATGTTTGGAC 59.598 41.667 3.65 0.00 39.21 4.02
321 322 4.402155 GGCTTTCCATATGATGTTTGGACA 59.598 41.667 3.65 0.00 39.21 4.02
322 323 5.105392 GGCTTTCCATATGATGTTTGGACAA 60.105 40.000 3.65 0.00 39.21 3.18
323 324 5.807011 GCTTTCCATATGATGTTTGGACAAC 59.193 40.000 3.65 0.00 39.21 3.32
324 325 5.559427 TTCCATATGATGTTTGGACAACG 57.441 39.130 3.65 0.00 39.21 4.10
325 326 4.584874 TCCATATGATGTTTGGACAACGT 58.415 39.130 3.65 0.00 39.66 3.99
326 327 4.394610 TCCATATGATGTTTGGACAACGTG 59.605 41.667 3.65 0.00 39.66 4.49
327 328 4.394610 CCATATGATGTTTGGACAACGTGA 59.605 41.667 3.65 0.00 39.66 4.35
328 329 5.066375 CCATATGATGTTTGGACAACGTGAT 59.934 40.000 3.65 0.00 39.66 3.06
329 330 4.685169 ATGATGTTTGGACAACGTGATC 57.315 40.909 0.00 0.00 39.66 2.92
330 331 2.811431 TGATGTTTGGACAACGTGATCC 59.189 45.455 10.74 10.74 39.66 3.36
331 332 1.222300 TGTTTGGACAACGTGATCCG 58.778 50.000 12.42 2.55 44.03 4.18
332 333 1.202545 TGTTTGGACAACGTGATCCGA 60.203 47.619 12.42 8.64 40.70 4.55
333 334 1.868498 GTTTGGACAACGTGATCCGAA 59.132 47.619 14.37 14.37 40.70 4.30
334 335 1.504359 TTGGACAACGTGATCCGAAC 58.496 50.000 12.42 0.00 40.70 3.95
335 336 0.320073 TGGACAACGTGATCCGAACC 60.320 55.000 12.42 7.81 40.70 3.62
336 337 1.017701 GGACAACGTGATCCGAACCC 61.018 60.000 10.05 3.24 40.70 4.11
337 338 0.320073 GACAACGTGATCCGAACCCA 60.320 55.000 10.05 0.00 40.70 4.51
338 339 0.323629 ACAACGTGATCCGAACCCAT 59.676 50.000 10.05 0.00 40.70 4.00
339 340 0.726827 CAACGTGATCCGAACCCATG 59.273 55.000 10.05 0.00 40.70 3.66
340 341 1.024579 AACGTGATCCGAACCCATGC 61.025 55.000 10.05 0.00 40.70 4.06
341 342 2.525248 CGTGATCCGAACCCATGCG 61.525 63.158 0.00 0.00 39.56 4.73
352 353 3.814268 CCATGCGGGAGGTTTGCG 61.814 66.667 0.00 0.00 40.01 4.85
353 354 3.814268 CATGCGGGAGGTTTGCGG 61.814 66.667 0.00 0.00 0.00 5.69
374 375 3.335534 GGCGACGACCACACACAC 61.336 66.667 0.00 0.00 0.00 3.82
378 379 3.819877 GACGACCACACACACCCCC 62.820 68.421 0.00 0.00 0.00 5.40
379 380 3.867783 CGACCACACACACCCCCA 61.868 66.667 0.00 0.00 0.00 4.96
380 381 2.843545 GACCACACACACCCCCAT 59.156 61.111 0.00 0.00 0.00 4.00
381 382 1.152830 GACCACACACACCCCCATT 59.847 57.895 0.00 0.00 0.00 3.16
382 383 0.893727 GACCACACACACCCCCATTC 60.894 60.000 0.00 0.00 0.00 2.67
383 384 1.971167 CCACACACACCCCCATTCG 60.971 63.158 0.00 0.00 0.00 3.34
385 386 1.228124 ACACACACCCCCATTCGTG 60.228 57.895 0.00 0.00 36.04 4.35
386 387 1.228124 CACACACCCCCATTCGTGT 60.228 57.895 0.00 0.00 43.90 4.49
387 388 0.035598 CACACACCCCCATTCGTGTA 59.964 55.000 0.00 0.00 41.20 2.90
461 462 1.946475 GCTCCCGAGACCACACTACC 61.946 65.000 0.00 0.00 0.00 3.18
462 463 0.611062 CTCCCGAGACCACACTACCA 60.611 60.000 0.00 0.00 0.00 3.25
463 464 0.896940 TCCCGAGACCACACTACCAC 60.897 60.000 0.00 0.00 0.00 4.16
464 465 0.898789 CCCGAGACCACACTACCACT 60.899 60.000 0.00 0.00 0.00 4.00
465 466 1.615116 CCCGAGACCACACTACCACTA 60.615 57.143 0.00 0.00 0.00 2.74
467 468 2.156917 CGAGACCACACTACCACTACA 58.843 52.381 0.00 0.00 0.00 2.74
468 469 2.095364 CGAGACCACACTACCACTACAC 60.095 54.545 0.00 0.00 0.00 2.90
469 470 3.155501 GAGACCACACTACCACTACACT 58.844 50.000 0.00 0.00 0.00 3.55
470 471 3.155501 AGACCACACTACCACTACACTC 58.844 50.000 0.00 0.00 0.00 3.51
471 472 2.230750 GACCACACTACCACTACACTCC 59.769 54.545 0.00 0.00 0.00 3.85
472 473 1.549170 CCACACTACCACTACACTCCC 59.451 57.143 0.00 0.00 0.00 4.30
473 474 2.526432 CACACTACCACTACACTCCCT 58.474 52.381 0.00 0.00 0.00 4.20
490 491 2.969157 CTGACGCACAGGATAGCTG 58.031 57.895 0.00 0.00 42.39 4.24
503 504 4.041321 CAGGATAGCTGGAATGATTCTCCA 59.959 45.833 5.03 0.00 40.77 3.86
514 515 1.002430 TGATTCTCCACAGAGCCACAC 59.998 52.381 0.00 0.00 40.22 3.82
554 555 1.139947 GCTACGTGAGCCTCACTCC 59.860 63.158 21.72 4.53 46.41 3.85
578 579 1.028905 GATCACTCTCCGGTCTCCAG 58.971 60.000 0.00 0.00 0.00 3.86
580 581 0.989602 TCACTCTCCGGTCTCCAGTA 59.010 55.000 0.00 0.00 0.00 2.74
592 593 4.471548 GGTCTCCAGTATCCAGCTAGTAA 58.528 47.826 0.00 0.00 0.00 2.24
613 666 1.417577 AAAGCGCAAAACAACACGGC 61.418 50.000 11.47 0.00 0.00 5.68
740 798 4.596585 CCACACCCCACACCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
741 799 3.814906 CACACCCCACACCCCACA 61.815 66.667 0.00 0.00 0.00 4.17
742 800 3.816090 ACACCCCACACCCCACAC 61.816 66.667 0.00 0.00 0.00 3.82
743 801 4.596585 CACCCCACACCCCACACC 62.597 72.222 0.00 0.00 0.00 4.16
773 831 4.657408 TGCTTCACATGGCGGGCA 62.657 61.111 6.74 6.74 0.00 5.36
795 861 1.460255 CAGAGGAGGCCAAACCCAA 59.540 57.895 5.01 0.00 40.58 4.12
804 870 3.601685 CAAACCCAAGCCGCCGTT 61.602 61.111 0.00 0.00 0.00 4.44
806 872 3.785122 AAACCCAAGCCGCCGTTCT 62.785 57.895 0.00 0.00 0.00 3.01
812 878 2.879233 AAGCCGCCGTTCTTCTCCA 61.879 57.895 0.00 0.00 0.00 3.86
814 880 2.434359 CCGCCGTTCTTCTCCACC 60.434 66.667 0.00 0.00 0.00 4.61
815 881 2.342279 CGCCGTTCTTCTCCACCA 59.658 61.111 0.00 0.00 0.00 4.17
819 1909 0.320771 CCGTTCTTCTCCACCACCTG 60.321 60.000 0.00 0.00 0.00 4.00
826 1916 3.198635 TCTTCTCCACCACCTGATTCATC 59.801 47.826 0.00 0.00 0.00 2.92
831 1921 0.179000 ACCACCTGATTCATCTCGCC 59.821 55.000 0.00 0.00 0.00 5.54
849 1939 2.401990 CGCGCCCATAAAACCGAC 59.598 61.111 0.00 0.00 0.00 4.79
881 1971 2.099405 CAACAACCTCCAACAACCAGT 58.901 47.619 0.00 0.00 0.00 4.00
886 1976 1.134098 ACCTCCAACAACCAGTGTCAG 60.134 52.381 0.00 0.00 40.60 3.51
887 1977 0.947244 CTCCAACAACCAGTGTCAGC 59.053 55.000 0.00 0.00 40.60 4.26
888 1978 0.254462 TCCAACAACCAGTGTCAGCA 59.746 50.000 0.00 0.00 40.60 4.41
889 1979 1.102154 CCAACAACCAGTGTCAGCAA 58.898 50.000 0.00 0.00 40.60 3.91
897 1987 1.331756 CCAGTGTCAGCAACAACAGTC 59.668 52.381 0.00 0.00 40.31 3.51
905 1995 2.203294 AACAACAGTCCCCACCGC 60.203 61.111 0.00 0.00 0.00 5.68
918 2008 3.637273 ACCGCCCACAAGACCCTC 61.637 66.667 0.00 0.00 0.00 4.30
920 2010 2.429930 CGCCCACAAGACCCTCAA 59.570 61.111 0.00 0.00 0.00 3.02
923 2013 0.890996 GCCCACAAGACCCTCAACTG 60.891 60.000 0.00 0.00 0.00 3.16
924 2014 0.764890 CCCACAAGACCCTCAACTGA 59.235 55.000 0.00 0.00 0.00 3.41
925 2015 1.142870 CCCACAAGACCCTCAACTGAA 59.857 52.381 0.00 0.00 0.00 3.02
926 2016 2.224867 CCCACAAGACCCTCAACTGAAT 60.225 50.000 0.00 0.00 0.00 2.57
929 2019 4.136796 CACAAGACCCTCAACTGAATTCA 58.863 43.478 8.12 8.12 0.00 2.57
933 2023 2.814336 GACCCTCAACTGAATTCACACC 59.186 50.000 3.38 0.00 0.00 4.16
934 2024 2.174639 ACCCTCAACTGAATTCACACCA 59.825 45.455 3.38 0.00 0.00 4.17
935 2025 2.554032 CCCTCAACTGAATTCACACCAC 59.446 50.000 3.38 0.00 0.00 4.16
936 2026 2.224079 CCTCAACTGAATTCACACCACG 59.776 50.000 3.38 0.00 0.00 4.94
937 2027 1.601903 TCAACTGAATTCACACCACGC 59.398 47.619 3.38 0.00 0.00 5.34
938 2028 0.951558 AACTGAATTCACACCACGCC 59.048 50.000 3.38 0.00 0.00 5.68
939 2029 1.227999 ACTGAATTCACACCACGCCG 61.228 55.000 3.38 0.00 0.00 6.46
940 2030 1.911293 CTGAATTCACACCACGCCGG 61.911 60.000 3.38 0.00 42.50 6.13
952 2042 4.849329 CGCCGGTGCCGTAGTCTC 62.849 72.222 0.00 0.00 37.81 3.36
953 2043 3.755628 GCCGGTGCCGTAGTCTCA 61.756 66.667 1.90 0.00 37.81 3.27
954 2044 2.967397 CCGGTGCCGTAGTCTCAA 59.033 61.111 9.90 0.00 37.81 3.02
955 2045 1.445582 CCGGTGCCGTAGTCTCAAC 60.446 63.158 9.90 0.00 37.81 3.18
956 2046 1.445582 CGGTGCCGTAGTCTCAACC 60.446 63.158 1.93 0.00 34.35 3.77
957 2047 1.079336 GGTGCCGTAGTCTCAACCC 60.079 63.158 0.00 0.00 0.00 4.11
958 2048 1.669440 GTGCCGTAGTCTCAACCCA 59.331 57.895 0.00 0.00 0.00 4.51
959 2049 0.389948 GTGCCGTAGTCTCAACCCAG 60.390 60.000 0.00 0.00 0.00 4.45
960 2050 1.448013 GCCGTAGTCTCAACCCAGC 60.448 63.158 0.00 0.00 0.00 4.85
961 2051 1.889530 GCCGTAGTCTCAACCCAGCT 61.890 60.000 0.00 0.00 0.00 4.24
962 2052 0.108615 CCGTAGTCTCAACCCAGCTG 60.109 60.000 6.78 6.78 0.00 4.24
963 2053 0.737715 CGTAGTCTCAACCCAGCTGC 60.738 60.000 8.66 0.00 0.00 5.25
964 2054 0.610687 GTAGTCTCAACCCAGCTGCT 59.389 55.000 8.66 0.00 0.00 4.24
1304 2400 3.889044 GGCGCTCGAGACGATCCA 61.889 66.667 26.02 0.00 34.61 3.41
1356 2452 1.454295 GGAGGAGGAGGAGGACGAC 60.454 68.421 0.00 0.00 0.00 4.34
1360 2456 2.436292 AGGAGGAGGACGACGACG 60.436 66.667 5.58 5.58 45.75 5.12
1361 2457 4.176851 GGAGGAGGACGACGACGC 62.177 72.222 7.30 0.07 43.96 5.19
1362 2458 3.126225 GAGGAGGACGACGACGCT 61.126 66.667 7.30 0.00 43.96 5.07
1363 2459 3.384014 GAGGAGGACGACGACGCTG 62.384 68.421 7.30 0.00 43.96 5.18
1364 2460 3.429141 GGAGGACGACGACGCTGA 61.429 66.667 7.30 0.00 43.96 4.26
1365 2461 2.202324 GAGGACGACGACGCTGAC 60.202 66.667 7.30 0.00 43.96 3.51
1589 2685 1.202463 CCACTACAAGAGGCTCATCGG 60.202 57.143 18.26 5.28 0.00 4.18
1590 2686 0.461961 ACTACAAGAGGCTCATCGGC 59.538 55.000 18.26 0.00 38.75 5.54
1639 2735 0.388134 GAACTACGCGCAGTTCCTCA 60.388 55.000 32.65 1.60 45.75 3.86
1650 2746 1.343465 CAGTTCCTCAACCAGGTACGT 59.657 52.381 0.00 0.00 45.33 3.57
1651 2747 2.559668 CAGTTCCTCAACCAGGTACGTA 59.440 50.000 0.00 0.00 45.33 3.57
1652 2748 2.560105 AGTTCCTCAACCAGGTACGTAC 59.440 50.000 17.56 17.56 45.33 3.67
1653 2749 2.291209 TCCTCAACCAGGTACGTACA 57.709 50.000 26.02 3.87 43.95 2.90
1654 2750 2.165167 TCCTCAACCAGGTACGTACAG 58.835 52.381 26.02 17.33 43.95 2.74
1655 2751 1.891150 CCTCAACCAGGTACGTACAGT 59.109 52.381 26.02 16.87 37.53 3.55
1667 2763 1.514553 GTACAGTACCACCCTCGCC 59.485 63.158 0.00 0.00 0.00 5.54
1735 2831 2.954989 TCAGAACTCAGATCCGGAGATG 59.045 50.000 11.34 11.48 36.26 2.90
1738 2834 4.039004 CAGAACTCAGATCCGGAGATGAAT 59.961 45.833 18.91 9.34 36.26 2.57
1749 2845 5.800296 TCCGGAGATGAATGTTCTAACAAA 58.200 37.500 0.00 0.00 43.03 2.83
1756 2852 0.802494 ATGTTCTAACAAAGGCGCCG 59.198 50.000 23.20 9.91 43.03 6.46
1757 2853 1.231958 TGTTCTAACAAAGGCGCCGG 61.232 55.000 23.20 17.44 35.67 6.13
1758 2854 2.329614 TTCTAACAAAGGCGCCGGC 61.330 57.895 23.20 19.07 38.90 6.13
1801 2897 2.513897 GTGAAAGGGGATCGGCGG 60.514 66.667 7.21 0.00 0.00 6.13
1873 2969 2.577112 CTGCTGTCGGAGTACGCG 60.577 66.667 3.53 3.53 43.86 6.01
1925 3021 3.248171 GCGCGTCCAGCTACTTCG 61.248 66.667 8.43 0.00 45.59 3.79
2031 3127 2.413351 CGAGGACGACGATGCCAT 59.587 61.111 0.00 0.00 42.66 4.40
2039 3135 0.249031 CGACGATGCCATGAGCTACA 60.249 55.000 0.00 0.00 44.23 2.74
2049 3145 1.623542 ATGAGCTACACCGGGTTCCC 61.624 60.000 6.32 0.00 0.00 3.97
2088 3184 1.667830 CTTCCGCCACGAGCTGAAA 60.668 57.895 0.00 0.00 43.13 2.69
2089 3185 1.630244 CTTCCGCCACGAGCTGAAAG 61.630 60.000 0.00 3.49 43.13 2.62
2090 3186 2.048222 CCGCCACGAGCTGAAAGA 60.048 61.111 0.00 0.00 40.39 2.52
2091 3187 1.667830 CCGCCACGAGCTGAAAGAA 60.668 57.895 0.00 0.00 40.39 2.52
2092 3188 1.227999 CCGCCACGAGCTGAAAGAAA 61.228 55.000 0.00 0.00 40.39 2.52
2096 3192 2.494059 CCACGAGCTGAAAGAAAGGAA 58.506 47.619 0.00 0.00 34.07 3.36
2106 3202 3.125573 GAAAGGAACCTCGCCGCC 61.126 66.667 0.00 0.00 0.00 6.13
2147 3243 1.134530 GACGTTGATCGGAGCTCGTG 61.135 60.000 17.62 2.65 44.69 4.35
2148 3244 1.154016 CGTTGATCGGAGCTCGTGT 60.154 57.895 7.83 0.00 40.32 4.49
2149 3245 1.406219 CGTTGATCGGAGCTCGTGTG 61.406 60.000 7.83 0.00 40.32 3.82
2150 3246 1.078759 GTTGATCGGAGCTCGTGTGG 61.079 60.000 7.83 0.00 40.32 4.17
2151 3247 1.532604 TTGATCGGAGCTCGTGTGGT 61.533 55.000 7.83 0.00 40.32 4.16
2152 3248 1.215647 GATCGGAGCTCGTGTGGTT 59.784 57.895 7.83 0.00 40.32 3.67
2153 3249 1.078759 GATCGGAGCTCGTGTGGTTG 61.079 60.000 7.83 0.00 40.32 3.77
2154 3250 3.414700 CGGAGCTCGTGTGGTTGC 61.415 66.667 7.83 0.00 0.00 4.17
2155 3251 2.031163 GGAGCTCGTGTGGTTGCT 59.969 61.111 7.83 0.00 38.59 3.91
2156 3252 1.598130 GGAGCTCGTGTGGTTGCTT 60.598 57.895 7.83 0.00 35.76 3.91
2179 3275 3.118811 GCTTCAGACCTTCAGTAGCAGAT 60.119 47.826 0.00 0.00 0.00 2.90
2181 3277 4.727507 TCAGACCTTCAGTAGCAGATTC 57.272 45.455 0.00 0.00 0.00 2.52
2183 3279 2.769095 AGACCTTCAGTAGCAGATTCCC 59.231 50.000 0.00 0.00 0.00 3.97
2184 3280 2.501723 GACCTTCAGTAGCAGATTCCCA 59.498 50.000 0.00 0.00 0.00 4.37
2185 3281 2.237392 ACCTTCAGTAGCAGATTCCCAC 59.763 50.000 0.00 0.00 0.00 4.61
2186 3282 2.237143 CCTTCAGTAGCAGATTCCCACA 59.763 50.000 0.00 0.00 0.00 4.17
2187 3283 3.118112 CCTTCAGTAGCAGATTCCCACAT 60.118 47.826 0.00 0.00 0.00 3.21
2225 4309 1.687494 GCGTGACTTGCATCGGAGTC 61.687 60.000 8.97 8.97 42.01 3.36
2249 4333 2.417719 GCCTTGTACTTCTGTGTCCTG 58.582 52.381 0.00 0.00 0.00 3.86
2252 4336 0.317160 TGTACTTCTGTGTCCTGGCG 59.683 55.000 0.00 0.00 0.00 5.69
2270 4354 2.589014 GCGTTGAAATCCTTGCAGAAG 58.411 47.619 0.00 0.00 0.00 2.85
2378 4462 1.337387 GTCGCTAGAATAGGCTTCCGT 59.663 52.381 0.00 0.00 39.70 4.69
2439 4523 2.888513 CAGATCTGCAGTGAAAACCG 57.111 50.000 14.67 0.00 0.00 4.44
2496 4580 9.924010 ACTACTTATCTCAAGTTATCAGTACCT 57.076 33.333 0.00 0.00 0.00 3.08
2504 4588 6.441222 TCAAGTTATCAGTACCTAGTGGGAT 58.559 40.000 0.00 0.00 38.76 3.85
2540 4624 8.868522 ACTGAAATGAATATCCACTCAAAAGA 57.131 30.769 0.00 0.00 0.00 2.52
2554 4638 9.621629 TCCACTCAAAAGAGTAATTTAAGTGAA 57.378 29.630 4.31 0.00 37.80 3.18
2555 4639 9.884465 CCACTCAAAAGAGTAATTTAAGTGAAG 57.116 33.333 4.31 0.00 37.80 3.02
2573 4657 8.693542 AAGTGAAGAACAAACAAAGATTTCTG 57.306 30.769 0.00 0.00 0.00 3.02
2619 4703 7.696992 ACAAAAGGTTTCTGAAGTAAACTCA 57.303 32.000 0.00 0.00 37.09 3.41
2630 4714 9.661563 TTCTGAAGTAAACTCAAAGTGTTCTTA 57.338 29.630 0.00 0.00 33.09 2.10
2655 4739 3.186613 CCGCCTTCTTAGAAACTTGTCAC 59.813 47.826 0.00 0.00 0.00 3.67
2678 4762 7.123547 TCACTTGAAAAAGGTGTACAATTTCCT 59.876 33.333 15.98 8.84 33.30 3.36
2680 4764 8.973182 ACTTGAAAAAGGTGTACAATTTCCTAA 58.027 29.630 15.98 8.45 30.80 2.69
2685 4769 9.607988 AAAAAGGTGTACAATTTCCTAAAAAGG 57.392 29.630 0.00 0.00 0.00 3.11
2686 4770 7.907841 AAGGTGTACAATTTCCTAAAAAGGT 57.092 32.000 0.00 0.00 0.00 3.50
2687 4771 7.284919 AGGTGTACAATTTCCTAAAAAGGTG 57.715 36.000 0.00 0.00 0.00 4.00
2688 4772 6.837048 AGGTGTACAATTTCCTAAAAAGGTGT 59.163 34.615 0.00 0.00 0.00 4.16
2689 4773 8.000127 AGGTGTACAATTTCCTAAAAAGGTGTA 59.000 33.333 0.00 0.00 0.00 2.90
2690 4774 8.077991 GGTGTACAATTTCCTAAAAAGGTGTAC 58.922 37.037 0.00 12.61 39.14 2.90
2691 4775 8.623030 GTGTACAATTTCCTAAAAAGGTGTACA 58.377 33.333 15.98 15.98 42.02 2.90
2692 4776 9.186837 TGTACAATTTCCTAAAAAGGTGTACAA 57.813 29.630 16.93 6.96 41.73 2.41
2724 4826 5.678107 GCAATTTGTTGCAAAAATGTTCCCA 60.678 36.000 2.11 0.00 46.60 4.37
2741 4843 8.664669 ATGTTCCCACATAATAAACTTTTCCT 57.335 30.769 0.00 0.00 42.24 3.36
2793 4895 2.034939 TCAGCAAAAGCATGTGTCCAAG 59.965 45.455 0.00 0.00 0.00 3.61
2794 4896 2.034124 AGCAAAAGCATGTGTCCAAGT 58.966 42.857 0.00 0.00 0.00 3.16
2804 4906 4.737352 GCATGTGTCCAAGTCACAAAATGT 60.737 41.667 2.99 0.00 46.47 2.71
2807 4909 5.189928 TGTGTCCAAGTCACAAAATGTAGT 58.810 37.500 0.00 0.00 41.83 2.73
2817 4919 5.992217 GTCACAAAATGTAGTCTCCTCAGTT 59.008 40.000 0.00 0.00 0.00 3.16
2822 4924 7.873505 ACAAAATGTAGTCTCCTCAGTTACTTC 59.126 37.037 0.00 0.00 0.00 3.01
2837 4939 5.823045 CAGTTACTTCCCTCCAATCATTACC 59.177 44.000 0.00 0.00 0.00 2.85
2843 4945 3.202151 TCCCTCCAATCATTACCCTGAAC 59.798 47.826 0.00 0.00 0.00 3.18
2852 4954 7.312899 CAATCATTACCCTGAACTAAAACACC 58.687 38.462 0.00 0.00 0.00 4.16
2859 4961 7.849322 ACCCTGAACTAAAACACCATTTAAT 57.151 32.000 0.00 0.00 0.00 1.40
2929 5031 8.294341 TGTCTAAGTTACAAATTCAGACTTCG 57.706 34.615 0.00 0.00 33.69 3.79
2943 5045 2.628657 AGACTTCGTCAGTTACTTGCCT 59.371 45.455 0.00 0.00 35.01 4.75
2951 5053 3.437049 GTCAGTTACTTGCCTCCAATCAC 59.563 47.826 0.00 0.00 0.00 3.06
2953 5055 3.438087 CAGTTACTTGCCTCCAATCACTG 59.562 47.826 0.00 0.00 31.49 3.66
2955 5057 0.111061 ACTTGCCTCCAATCACTGCA 59.889 50.000 0.00 0.00 0.00 4.41
2977 5079 5.449862 GCACTGAACTGAAAACACCATGTAA 60.450 40.000 0.00 0.00 0.00 2.41
2978 5080 5.971202 CACTGAACTGAAAACACCATGTAAC 59.029 40.000 0.00 0.00 0.00 2.50
2979 5081 5.650266 ACTGAACTGAAAACACCATGTAACA 59.350 36.000 0.00 0.00 0.00 2.41
2980 5082 6.130298 TGAACTGAAAACACCATGTAACAG 57.870 37.500 0.00 0.00 34.05 3.16
2982 5084 6.545666 TGAACTGAAAACACCATGTAACAGAT 59.454 34.615 0.00 0.00 33.04 2.90
2983 5085 7.717436 TGAACTGAAAACACCATGTAACAGATA 59.283 33.333 0.00 0.00 33.04 1.98
2984 5086 8.635765 AACTGAAAACACCATGTAACAGATAT 57.364 30.769 0.00 0.00 33.04 1.63
2985 5087 9.733556 AACTGAAAACACCATGTAACAGATATA 57.266 29.630 0.00 0.00 33.04 0.86
2986 5088 9.162764 ACTGAAAACACCATGTAACAGATATAC 57.837 33.333 0.00 0.00 33.04 1.47
3013 5115 8.879427 ATAAGGGCAAGATATGTTAAATACCC 57.121 34.615 0.00 0.00 0.00 3.69
3014 5116 6.274322 AGGGCAAGATATGTTAAATACCCA 57.726 37.500 0.00 0.00 36.01 4.51
3015 5117 6.068670 AGGGCAAGATATGTTAAATACCCAC 58.931 40.000 0.00 0.00 36.01 4.61
3018 5120 7.722285 GGGCAAGATATGTTAAATACCCACTAA 59.278 37.037 0.00 0.00 33.65 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.876589 TTGAAGCGGTGAGTCGGCC 62.877 63.158 0.00 0.00 42.23 6.13
29 30 1.741770 ATTGAAGCGGTGAGTCGGC 60.742 57.895 0.00 0.00 41.70 5.54
30 31 1.361668 CCATTGAAGCGGTGAGTCGG 61.362 60.000 0.00 0.00 0.00 4.79
31 32 1.970917 GCCATTGAAGCGGTGAGTCG 61.971 60.000 0.00 0.00 0.00 4.18
32 33 0.955428 TGCCATTGAAGCGGTGAGTC 60.955 55.000 0.00 0.00 0.00 3.36
33 34 0.957395 CTGCCATTGAAGCGGTGAGT 60.957 55.000 0.00 0.00 0.00 3.41
34 35 0.674581 TCTGCCATTGAAGCGGTGAG 60.675 55.000 0.00 0.00 37.86 3.51
35 36 0.035152 ATCTGCCATTGAAGCGGTGA 60.035 50.000 0.00 0.00 37.86 4.02
36 37 0.099968 CATCTGCCATTGAAGCGGTG 59.900 55.000 0.00 0.00 37.86 4.94
37 38 1.660560 GCATCTGCCATTGAAGCGGT 61.661 55.000 0.00 0.00 37.86 5.68
38 39 1.065273 GCATCTGCCATTGAAGCGG 59.935 57.895 0.00 0.00 38.00 5.52
39 40 0.248498 CTGCATCTGCCATTGAAGCG 60.248 55.000 0.00 0.00 41.18 4.68
40 41 0.527817 GCTGCATCTGCCATTGAAGC 60.528 55.000 0.00 0.00 41.18 3.86
41 42 0.248498 CGCTGCATCTGCCATTGAAG 60.248 55.000 0.00 0.00 41.18 3.02
42 43 0.677414 TCGCTGCATCTGCCATTGAA 60.677 50.000 0.00 0.00 41.18 2.69
43 44 0.677414 TTCGCTGCATCTGCCATTGA 60.677 50.000 0.00 0.00 41.18 2.57
44 45 0.171679 TTTCGCTGCATCTGCCATTG 59.828 50.000 0.00 0.00 41.18 2.82
45 46 0.171903 GTTTCGCTGCATCTGCCATT 59.828 50.000 0.00 0.00 41.18 3.16
46 47 1.805254 GTTTCGCTGCATCTGCCAT 59.195 52.632 0.00 0.00 41.18 4.40
47 48 2.679934 CGTTTCGCTGCATCTGCCA 61.680 57.895 0.00 0.00 41.18 4.92
48 49 2.099062 CGTTTCGCTGCATCTGCC 59.901 61.111 0.00 0.00 41.18 4.85
49 50 1.061799 CAACGTTTCGCTGCATCTGC 61.062 55.000 0.00 0.00 42.50 4.26
50 51 1.061799 GCAACGTTTCGCTGCATCTG 61.062 55.000 11.63 0.00 46.26 2.90
51 52 1.207593 GCAACGTTTCGCTGCATCT 59.792 52.632 11.63 0.00 46.26 2.90
52 53 3.741058 GCAACGTTTCGCTGCATC 58.259 55.556 11.63 0.00 46.26 3.91
55 56 2.791331 GACGCAACGTTTCGCTGC 60.791 61.111 19.97 9.67 44.05 5.25
56 57 2.127758 GGACGCAACGTTTCGCTG 60.128 61.111 19.97 9.87 41.37 5.18
57 58 2.586635 TGGACGCAACGTTTCGCT 60.587 55.556 19.97 7.61 41.37 4.93
58 59 2.424640 GTGGACGCAACGTTTCGC 60.425 61.111 19.97 10.31 41.37 4.70
59 60 1.768112 AAGGTGGACGCAACGTTTCG 61.768 55.000 18.56 18.56 41.37 3.46
60 61 0.316689 CAAGGTGGACGCAACGTTTC 60.317 55.000 0.00 0.00 41.37 2.78
61 62 0.745128 TCAAGGTGGACGCAACGTTT 60.745 50.000 0.00 0.00 41.37 3.60
62 63 1.153329 TCAAGGTGGACGCAACGTT 60.153 52.632 0.00 0.00 41.37 3.99
63 64 1.594293 CTCAAGGTGGACGCAACGT 60.594 57.895 0.00 0.00 45.10 3.99
64 65 2.954753 GCTCAAGGTGGACGCAACG 61.955 63.158 0.00 0.00 0.00 4.10
65 66 2.617274 GGCTCAAGGTGGACGCAAC 61.617 63.158 0.00 0.00 0.00 4.17
66 67 2.281484 GGCTCAAGGTGGACGCAA 60.281 61.111 0.00 0.00 0.00 4.85
67 68 4.680237 CGGCTCAAGGTGGACGCA 62.680 66.667 0.00 0.00 0.00 5.24
68 69 4.681978 ACGGCTCAAGGTGGACGC 62.682 66.667 0.00 0.00 0.00 5.19
69 70 2.432628 GACGGCTCAAGGTGGACG 60.433 66.667 0.00 0.00 0.00 4.79
70 71 0.670854 GAAGACGGCTCAAGGTGGAC 60.671 60.000 0.00 0.00 0.00 4.02
71 72 1.118965 TGAAGACGGCTCAAGGTGGA 61.119 55.000 0.00 0.00 0.00 4.02
72 73 0.250295 TTGAAGACGGCTCAAGGTGG 60.250 55.000 0.00 0.00 0.00 4.61
73 74 1.813513 ATTGAAGACGGCTCAAGGTG 58.186 50.000 0.00 0.00 0.00 4.00
74 75 3.535561 CATATTGAAGACGGCTCAAGGT 58.464 45.455 0.00 0.00 0.00 3.50
75 76 2.874701 CCATATTGAAGACGGCTCAAGG 59.125 50.000 0.00 0.00 0.00 3.61
76 77 3.797039 TCCATATTGAAGACGGCTCAAG 58.203 45.455 0.00 0.00 0.00 3.02
77 78 3.797039 CTCCATATTGAAGACGGCTCAA 58.203 45.455 0.00 0.00 0.00 3.02
78 79 2.483714 GCTCCATATTGAAGACGGCTCA 60.484 50.000 0.00 0.00 0.00 4.26
79 80 2.139118 GCTCCATATTGAAGACGGCTC 58.861 52.381 0.00 0.00 0.00 4.70
80 81 1.539065 CGCTCCATATTGAAGACGGCT 60.539 52.381 0.00 0.00 0.00 5.52
81 82 0.861837 CGCTCCATATTGAAGACGGC 59.138 55.000 0.00 0.00 0.00 5.68
82 83 1.502231 CCGCTCCATATTGAAGACGG 58.498 55.000 0.00 0.00 0.00 4.79
83 84 1.502231 CCCGCTCCATATTGAAGACG 58.498 55.000 0.00 0.00 0.00 4.18
84 85 1.202698 AGCCCGCTCCATATTGAAGAC 60.203 52.381 0.00 0.00 0.00 3.01
85 86 1.131638 AGCCCGCTCCATATTGAAGA 58.868 50.000 0.00 0.00 0.00 2.87
86 87 1.972872 AAGCCCGCTCCATATTGAAG 58.027 50.000 0.00 0.00 0.00 3.02
87 88 2.435372 AAAGCCCGCTCCATATTGAA 57.565 45.000 0.00 0.00 0.00 2.69
88 89 2.435372 AAAAGCCCGCTCCATATTGA 57.565 45.000 0.00 0.00 0.00 2.57
89 90 3.380004 TGTAAAAAGCCCGCTCCATATTG 59.620 43.478 0.00 0.00 0.00 1.90
90 91 3.626930 TGTAAAAAGCCCGCTCCATATT 58.373 40.909 0.00 0.00 0.00 1.28
91 92 3.214328 CTGTAAAAAGCCCGCTCCATAT 58.786 45.455 0.00 0.00 0.00 1.78
92 93 2.026636 ACTGTAAAAAGCCCGCTCCATA 60.027 45.455 0.00 0.00 0.00 2.74
93 94 1.271926 ACTGTAAAAAGCCCGCTCCAT 60.272 47.619 0.00 0.00 0.00 3.41
94 95 0.109723 ACTGTAAAAAGCCCGCTCCA 59.890 50.000 0.00 0.00 0.00 3.86
95 96 0.521735 CACTGTAAAAAGCCCGCTCC 59.478 55.000 0.00 0.00 0.00 4.70
96 97 0.521735 CCACTGTAAAAAGCCCGCTC 59.478 55.000 0.00 0.00 0.00 5.03
97 98 1.524008 GCCACTGTAAAAAGCCCGCT 61.524 55.000 0.00 0.00 0.00 5.52
98 99 1.080772 GCCACTGTAAAAAGCCCGC 60.081 57.895 0.00 0.00 0.00 6.13
99 100 0.887933 ATGCCACTGTAAAAAGCCCG 59.112 50.000 0.00 0.00 0.00 6.13
100 101 1.892474 TCATGCCACTGTAAAAAGCCC 59.108 47.619 0.00 0.00 0.00 5.19
101 102 3.658757 TTCATGCCACTGTAAAAAGCC 57.341 42.857 0.00 0.00 0.00 4.35
102 103 4.793216 CGTATTCATGCCACTGTAAAAAGC 59.207 41.667 0.00 0.00 0.00 3.51
103 104 5.331902 CCGTATTCATGCCACTGTAAAAAG 58.668 41.667 0.00 0.00 0.00 2.27
104 105 4.156922 CCCGTATTCATGCCACTGTAAAAA 59.843 41.667 0.00 0.00 0.00 1.94
105 106 3.692101 CCCGTATTCATGCCACTGTAAAA 59.308 43.478 0.00 0.00 0.00 1.52
106 107 3.275143 CCCGTATTCATGCCACTGTAAA 58.725 45.455 0.00 0.00 0.00 2.01
107 108 2.912771 CCCGTATTCATGCCACTGTAA 58.087 47.619 0.00 0.00 0.00 2.41
108 109 1.474320 GCCCGTATTCATGCCACTGTA 60.474 52.381 0.00 0.00 0.00 2.74
109 110 0.748005 GCCCGTATTCATGCCACTGT 60.748 55.000 0.00 0.00 0.00 3.55
110 111 0.747644 TGCCCGTATTCATGCCACTG 60.748 55.000 0.00 0.00 0.00 3.66
111 112 0.464373 CTGCCCGTATTCATGCCACT 60.464 55.000 0.00 0.00 0.00 4.00
112 113 2.024918 CTGCCCGTATTCATGCCAC 58.975 57.895 0.00 0.00 0.00 5.01
113 114 1.823470 GCTGCCCGTATTCATGCCA 60.823 57.895 0.00 0.00 0.00 4.92
114 115 0.250295 TAGCTGCCCGTATTCATGCC 60.250 55.000 0.00 0.00 0.00 4.40
115 116 1.151668 CTAGCTGCCCGTATTCATGC 58.848 55.000 0.00 0.00 0.00 4.06
116 117 1.151668 GCTAGCTGCCCGTATTCATG 58.848 55.000 7.70 0.00 35.15 3.07
117 118 0.319900 CGCTAGCTGCCCGTATTCAT 60.320 55.000 13.93 0.00 38.78 2.57
118 119 1.067416 CGCTAGCTGCCCGTATTCA 59.933 57.895 13.93 0.00 38.78 2.57
119 120 2.310966 GCGCTAGCTGCCCGTATTC 61.311 63.158 13.93 0.00 41.01 1.75
120 121 2.280186 GCGCTAGCTGCCCGTATT 60.280 61.111 13.93 0.00 41.01 1.89
150 151 3.308878 CTTTTTCCTCGCCCGCACG 62.309 63.158 0.00 0.00 0.00 5.34
151 152 1.912371 CTCTTTTTCCTCGCCCGCAC 61.912 60.000 0.00 0.00 0.00 5.34
152 153 1.671054 CTCTTTTTCCTCGCCCGCA 60.671 57.895 0.00 0.00 0.00 5.69
153 154 2.399356 CCTCTTTTTCCTCGCCCGC 61.399 63.158 0.00 0.00 0.00 6.13
154 155 0.605589 AACCTCTTTTTCCTCGCCCG 60.606 55.000 0.00 0.00 0.00 6.13
155 156 1.269723 CAAACCTCTTTTTCCTCGCCC 59.730 52.381 0.00 0.00 0.00 6.13
156 157 1.269723 CCAAACCTCTTTTTCCTCGCC 59.730 52.381 0.00 0.00 0.00 5.54
157 158 1.269723 CCCAAACCTCTTTTTCCTCGC 59.730 52.381 0.00 0.00 0.00 5.03
158 159 2.293399 CACCCAAACCTCTTTTTCCTCG 59.707 50.000 0.00 0.00 0.00 4.63
159 160 2.628178 CCACCCAAACCTCTTTTTCCTC 59.372 50.000 0.00 0.00 0.00 3.71
160 161 2.246327 TCCACCCAAACCTCTTTTTCCT 59.754 45.455 0.00 0.00 0.00 3.36
161 162 2.364324 GTCCACCCAAACCTCTTTTTCC 59.636 50.000 0.00 0.00 0.00 3.13
162 163 2.364324 GGTCCACCCAAACCTCTTTTTC 59.636 50.000 0.00 0.00 32.54 2.29
163 164 2.292587 TGGTCCACCCAAACCTCTTTTT 60.293 45.455 0.00 0.00 41.50 1.94
164 165 1.289530 TGGTCCACCCAAACCTCTTTT 59.710 47.619 0.00 0.00 41.50 2.27
165 166 0.930726 TGGTCCACCCAAACCTCTTT 59.069 50.000 0.00 0.00 41.50 2.52
166 167 0.478507 CTGGTCCACCCAAACCTCTT 59.521 55.000 0.00 0.00 44.65 2.85
167 168 1.427072 CCTGGTCCACCCAAACCTCT 61.427 60.000 0.00 0.00 44.65 3.69
168 169 1.074951 CCTGGTCCACCCAAACCTC 59.925 63.158 0.00 0.00 44.65 3.85
169 170 2.469765 CCCTGGTCCACCCAAACCT 61.470 63.158 0.00 0.00 44.65 3.50
170 171 2.117423 CCCTGGTCCACCCAAACC 59.883 66.667 0.00 0.00 44.65 3.27
171 172 2.600470 GCCCTGGTCCACCCAAAC 60.600 66.667 0.00 0.00 44.65 2.93
172 173 4.278513 CGCCCTGGTCCACCCAAA 62.279 66.667 0.00 0.00 44.65 3.28
182 183 4.785453 GGCTTCTGACCGCCCTGG 62.785 72.222 6.00 0.00 46.41 4.45
189 190 4.373116 TCGTGCCGGCTTCTGACC 62.373 66.667 29.70 5.51 0.00 4.02
190 191 2.811317 CTCGTGCCGGCTTCTGAC 60.811 66.667 29.70 16.17 0.00 3.51
191 192 2.989253 TCTCGTGCCGGCTTCTGA 60.989 61.111 29.70 17.93 0.00 3.27
192 193 2.507992 CTCTCGTGCCGGCTTCTG 60.508 66.667 29.70 15.33 0.00 3.02
193 194 4.443266 GCTCTCGTGCCGGCTTCT 62.443 66.667 29.70 0.00 0.00 2.85
202 203 4.477975 GTCCCGGTCGCTCTCGTG 62.478 72.222 0.00 0.00 36.96 4.35
203 204 4.719106 AGTCCCGGTCGCTCTCGT 62.719 66.667 0.00 0.00 36.96 4.18
204 205 3.878519 GAGTCCCGGTCGCTCTCG 61.879 72.222 0.00 0.00 0.00 4.04
205 206 3.519930 GGAGTCCCGGTCGCTCTC 61.520 72.222 14.16 8.05 0.00 3.20
215 216 3.978571 GAGGCTTTGCGGGAGTCCC 62.979 68.421 19.37 19.37 41.09 4.46
216 217 2.436824 GAGGCTTTGCGGGAGTCC 60.437 66.667 0.00 0.00 0.00 3.85
217 218 1.614241 TAGGAGGCTTTGCGGGAGTC 61.614 60.000 0.00 0.00 0.00 3.36
218 219 1.198759 TTAGGAGGCTTTGCGGGAGT 61.199 55.000 0.00 0.00 0.00 3.85
219 220 0.181350 ATTAGGAGGCTTTGCGGGAG 59.819 55.000 0.00 0.00 0.00 4.30
220 221 0.623723 AATTAGGAGGCTTTGCGGGA 59.376 50.000 0.00 0.00 0.00 5.14
221 222 1.134946 CAAATTAGGAGGCTTTGCGGG 59.865 52.381 0.00 0.00 0.00 6.13
222 223 1.818674 ACAAATTAGGAGGCTTTGCGG 59.181 47.619 0.00 0.00 34.08 5.69
223 224 2.749621 AGACAAATTAGGAGGCTTTGCG 59.250 45.455 0.00 0.00 34.08 4.85
224 225 4.790765 AAGACAAATTAGGAGGCTTTGC 57.209 40.909 0.00 0.00 34.08 3.68
225 226 9.710900 AAAATTAAGACAAATTAGGAGGCTTTG 57.289 29.630 0.00 0.00 36.26 2.77
226 227 9.710900 CAAAATTAAGACAAATTAGGAGGCTTT 57.289 29.630 0.00 0.00 0.00 3.51
227 228 7.819415 GCAAAATTAAGACAAATTAGGAGGCTT 59.181 33.333 0.00 0.00 0.00 4.35
228 229 7.323420 GCAAAATTAAGACAAATTAGGAGGCT 58.677 34.615 0.00 0.00 0.00 4.58
229 230 6.253512 CGCAAAATTAAGACAAATTAGGAGGC 59.746 38.462 0.00 0.00 0.00 4.70
230 231 6.751888 CCGCAAAATTAAGACAAATTAGGAGG 59.248 38.462 0.00 0.00 0.00 4.30
231 232 6.751888 CCCGCAAAATTAAGACAAATTAGGAG 59.248 38.462 0.00 0.00 0.00 3.69
232 233 6.434652 TCCCGCAAAATTAAGACAAATTAGGA 59.565 34.615 0.00 0.00 0.00 2.94
233 234 6.626302 TCCCGCAAAATTAAGACAAATTAGG 58.374 36.000 0.00 0.00 0.00 2.69
234 235 7.535139 TCTCCCGCAAAATTAAGACAAATTAG 58.465 34.615 0.00 0.00 0.00 1.73
235 236 7.455641 TCTCCCGCAAAATTAAGACAAATTA 57.544 32.000 0.00 0.00 0.00 1.40
236 237 6.339587 TCTCCCGCAAAATTAAGACAAATT 57.660 33.333 0.00 0.00 0.00 1.82
237 238 5.975693 TCTCCCGCAAAATTAAGACAAAT 57.024 34.783 0.00 0.00 0.00 2.32
238 239 5.776173 TTCTCCCGCAAAATTAAGACAAA 57.224 34.783 0.00 0.00 0.00 2.83
239 240 5.300792 ACTTTCTCCCGCAAAATTAAGACAA 59.699 36.000 0.00 0.00 0.00 3.18
240 241 4.825085 ACTTTCTCCCGCAAAATTAAGACA 59.175 37.500 0.00 0.00 0.00 3.41
241 242 5.372547 ACTTTCTCCCGCAAAATTAAGAC 57.627 39.130 0.00 0.00 0.00 3.01
242 243 5.121142 CGTACTTTCTCCCGCAAAATTAAGA 59.879 40.000 0.00 0.00 0.00 2.10
243 244 5.106830 ACGTACTTTCTCCCGCAAAATTAAG 60.107 40.000 0.00 0.00 0.00 1.85
244 245 4.756135 ACGTACTTTCTCCCGCAAAATTAA 59.244 37.500 0.00 0.00 0.00 1.40
245 246 4.152759 CACGTACTTTCTCCCGCAAAATTA 59.847 41.667 0.00 0.00 0.00 1.40
246 247 3.058501 CACGTACTTTCTCCCGCAAAATT 60.059 43.478 0.00 0.00 0.00 1.82
247 248 2.482721 CACGTACTTTCTCCCGCAAAAT 59.517 45.455 0.00 0.00 0.00 1.82
248 249 1.868498 CACGTACTTTCTCCCGCAAAA 59.132 47.619 0.00 0.00 0.00 2.44
249 250 1.504359 CACGTACTTTCTCCCGCAAA 58.496 50.000 0.00 0.00 0.00 3.68
250 251 0.947180 GCACGTACTTTCTCCCGCAA 60.947 55.000 0.00 0.00 0.00 4.85
251 252 1.373748 GCACGTACTTTCTCCCGCA 60.374 57.895 0.00 0.00 0.00 5.69
252 253 2.442188 CGCACGTACTTTCTCCCGC 61.442 63.158 0.00 0.00 0.00 6.13
253 254 1.804326 CCGCACGTACTTTCTCCCG 60.804 63.158 0.00 0.00 0.00 5.14
254 255 0.735287 GTCCGCACGTACTTTCTCCC 60.735 60.000 0.00 0.00 0.00 4.30
255 256 0.735287 GGTCCGCACGTACTTTCTCC 60.735 60.000 0.00 0.00 0.00 3.71
256 257 0.038892 TGGTCCGCACGTACTTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
257 258 0.319297 GTGGTCCGCACGTACTTTCT 60.319 55.000 0.00 0.00 0.00 2.52
258 259 1.611592 CGTGGTCCGCACGTACTTTC 61.612 60.000 2.76 0.00 40.71 2.62
259 260 1.662446 CGTGGTCCGCACGTACTTT 60.662 57.895 2.76 0.00 40.71 2.66
260 261 2.049802 CGTGGTCCGCACGTACTT 60.050 61.111 2.76 0.00 40.71 2.24
266 267 1.206578 CATTCAACGTGGTCCGCAC 59.793 57.895 2.76 0.00 41.42 5.34
267 268 1.963855 CCATTCAACGTGGTCCGCA 60.964 57.895 2.76 0.00 41.42 5.69
268 269 1.669760 TCCATTCAACGTGGTCCGC 60.670 57.895 0.00 0.00 41.42 5.54
269 270 1.296056 GGTCCATTCAACGTGGTCCG 61.296 60.000 0.00 0.00 44.03 4.79
270 271 1.296056 CGGTCCATTCAACGTGGTCC 61.296 60.000 0.00 0.00 40.27 4.46
271 272 1.908066 GCGGTCCATTCAACGTGGTC 61.908 60.000 0.00 0.00 37.96 4.02
272 273 1.964373 GCGGTCCATTCAACGTGGT 60.964 57.895 0.00 0.00 37.96 4.16
273 274 1.305219 ATGCGGTCCATTCAACGTGG 61.305 55.000 0.00 0.00 38.11 4.94
274 275 0.521291 AATGCGGTCCATTCAACGTG 59.479 50.000 0.00 0.00 40.02 4.49
275 276 2.006888 CTAATGCGGTCCATTCAACGT 58.993 47.619 0.00 0.00 42.99 3.99
276 277 2.276201 TCTAATGCGGTCCATTCAACG 58.724 47.619 0.00 0.00 42.99 4.10
277 278 3.003689 CCATCTAATGCGGTCCATTCAAC 59.996 47.826 0.00 0.00 42.99 3.18
278 279 3.213506 CCATCTAATGCGGTCCATTCAA 58.786 45.455 0.00 0.00 42.99 2.69
279 280 2.849942 CCATCTAATGCGGTCCATTCA 58.150 47.619 0.00 0.00 42.99 2.57
280 281 1.537202 GCCATCTAATGCGGTCCATTC 59.463 52.381 0.00 0.00 42.99 2.67
281 282 1.143684 AGCCATCTAATGCGGTCCATT 59.856 47.619 0.00 0.00 45.75 3.16
282 283 0.767375 AGCCATCTAATGCGGTCCAT 59.233 50.000 0.00 0.00 35.06 3.41
283 284 0.546122 AAGCCATCTAATGCGGTCCA 59.454 50.000 0.00 0.00 0.00 4.02
284 285 1.604278 GAAAGCCATCTAATGCGGTCC 59.396 52.381 0.00 0.00 0.00 4.46
285 286 1.604278 GGAAAGCCATCTAATGCGGTC 59.396 52.381 0.00 0.00 0.00 4.79
286 287 1.064758 TGGAAAGCCATCTAATGCGGT 60.065 47.619 0.00 0.00 39.92 5.68
287 288 1.679139 TGGAAAGCCATCTAATGCGG 58.321 50.000 0.00 0.00 39.92 5.69
296 297 8.727458 TTGTCCAAACATCATATGGAAAGCCAT 61.727 37.037 2.13 2.66 45.44 4.40
297 298 7.481036 TTGTCCAAACATCATATGGAAAGCCA 61.481 38.462 2.13 0.00 44.41 4.75
298 299 4.402155 TGTCCAAACATCATATGGAAAGCC 59.598 41.667 2.13 0.00 44.41 4.35
299 300 5.581126 TGTCCAAACATCATATGGAAAGC 57.419 39.130 2.13 0.00 44.41 3.51
300 301 6.029607 CGTTGTCCAAACATCATATGGAAAG 58.970 40.000 2.13 0.00 44.41 2.62
301 302 5.475220 ACGTTGTCCAAACATCATATGGAAA 59.525 36.000 2.13 0.00 44.41 3.13
302 303 5.007034 ACGTTGTCCAAACATCATATGGAA 58.993 37.500 2.13 0.00 44.41 3.53
303 304 4.394610 CACGTTGTCCAAACATCATATGGA 59.605 41.667 2.13 0.00 40.84 3.41
304 305 4.394610 TCACGTTGTCCAAACATCATATGG 59.605 41.667 2.13 0.00 34.73 2.74
305 306 5.544136 TCACGTTGTCCAAACATCATATG 57.456 39.130 0.00 0.00 34.73 1.78
306 307 5.296780 GGATCACGTTGTCCAAACATCATAT 59.703 40.000 10.38 0.00 34.73 1.78
307 308 4.634004 GGATCACGTTGTCCAAACATCATA 59.366 41.667 10.38 0.00 34.73 2.15
308 309 3.440173 GGATCACGTTGTCCAAACATCAT 59.560 43.478 10.38 0.00 34.73 2.45
309 310 2.811431 GGATCACGTTGTCCAAACATCA 59.189 45.455 10.38 0.00 34.73 3.07
310 311 2.159707 CGGATCACGTTGTCCAAACATC 60.160 50.000 14.48 0.00 37.93 3.06
311 312 1.804151 CGGATCACGTTGTCCAAACAT 59.196 47.619 14.48 0.00 37.93 2.71
312 313 1.202545 TCGGATCACGTTGTCCAAACA 60.203 47.619 14.48 0.00 44.69 2.83
313 314 1.504359 TCGGATCACGTTGTCCAAAC 58.496 50.000 14.48 0.00 44.69 2.93
314 315 1.868498 GTTCGGATCACGTTGTCCAAA 59.132 47.619 14.48 1.72 44.69 3.28
315 316 1.504359 GTTCGGATCACGTTGTCCAA 58.496 50.000 14.48 6.73 44.69 3.53
316 317 0.320073 GGTTCGGATCACGTTGTCCA 60.320 55.000 14.48 1.83 44.69 4.02
317 318 1.017701 GGGTTCGGATCACGTTGTCC 61.018 60.000 6.00 6.00 44.69 4.02
318 319 0.320073 TGGGTTCGGATCACGTTGTC 60.320 55.000 0.00 0.00 44.69 3.18
319 320 0.323629 ATGGGTTCGGATCACGTTGT 59.676 50.000 0.00 0.00 44.69 3.32
320 321 0.726827 CATGGGTTCGGATCACGTTG 59.273 55.000 0.00 0.00 44.69 4.10
321 322 1.024579 GCATGGGTTCGGATCACGTT 61.025 55.000 0.00 0.00 44.69 3.99
322 323 1.449601 GCATGGGTTCGGATCACGT 60.450 57.895 0.00 0.00 44.69 4.49
323 324 2.525248 CGCATGGGTTCGGATCACG 61.525 63.158 0.68 0.00 46.11 4.35
324 325 3.409856 CGCATGGGTTCGGATCAC 58.590 61.111 0.68 0.00 0.00 3.06
335 336 3.814268 CGCAAACCTCCCGCATGG 61.814 66.667 0.00 0.00 0.00 3.66
336 337 3.814268 CCGCAAACCTCCCGCATG 61.814 66.667 0.00 0.00 0.00 4.06
355 356 4.634133 GTGTGTGGTCGTCGCCGA 62.634 66.667 0.00 0.00 41.73 5.54
356 357 4.934942 TGTGTGTGGTCGTCGCCG 62.935 66.667 0.00 0.00 0.00 6.46
357 358 3.335534 GTGTGTGTGGTCGTCGCC 61.336 66.667 0.00 0.00 0.00 5.54
358 359 3.335534 GGTGTGTGTGGTCGTCGC 61.336 66.667 0.00 0.00 0.00 5.19
359 360 2.660552 GGGTGTGTGTGGTCGTCG 60.661 66.667 0.00 0.00 0.00 5.12
360 361 2.280592 GGGGTGTGTGTGGTCGTC 60.281 66.667 0.00 0.00 0.00 4.20
361 362 3.868985 GGGGGTGTGTGTGGTCGT 61.869 66.667 0.00 0.00 0.00 4.34
362 363 2.690653 AATGGGGGTGTGTGTGGTCG 62.691 60.000 0.00 0.00 0.00 4.79
363 364 0.893727 GAATGGGGGTGTGTGTGGTC 60.894 60.000 0.00 0.00 0.00 4.02
373 374 1.197812 GGTACTACACGAATGGGGGT 58.802 55.000 0.00 0.00 0.00 4.95
374 375 1.411612 GAGGTACTACACGAATGGGGG 59.588 57.143 0.00 0.00 41.55 5.40
378 379 3.243771 GGATGGGAGGTACTACACGAATG 60.244 52.174 0.00 0.00 44.82 2.67
379 380 2.963782 GGATGGGAGGTACTACACGAAT 59.036 50.000 0.00 0.00 44.82 3.34
380 381 2.381911 GGATGGGAGGTACTACACGAA 58.618 52.381 0.00 0.00 44.82 3.85
381 382 1.748244 CGGATGGGAGGTACTACACGA 60.748 57.143 0.00 0.00 44.82 4.35
382 383 0.666913 CGGATGGGAGGTACTACACG 59.333 60.000 0.00 0.00 44.82 4.49
383 384 1.038280 CCGGATGGGAGGTACTACAC 58.962 60.000 0.00 0.00 44.82 2.90
385 386 3.835810 TCCGGATGGGAGGTACTAC 57.164 57.895 0.00 0.00 41.55 2.73
445 446 0.898789 AGTGGTAGTGTGGTCTCGGG 60.899 60.000 0.00 0.00 0.00 5.14
461 462 0.388649 GTGCGTCAGGGAGTGTAGTG 60.389 60.000 0.00 0.00 0.00 2.74
462 463 0.826256 TGTGCGTCAGGGAGTGTAGT 60.826 55.000 0.00 0.00 0.00 2.73
463 464 0.109086 CTGTGCGTCAGGGAGTGTAG 60.109 60.000 1.43 0.00 40.23 2.74
464 465 1.964448 CTGTGCGTCAGGGAGTGTA 59.036 57.895 1.43 0.00 40.23 2.90
465 466 2.737180 CTGTGCGTCAGGGAGTGT 59.263 61.111 1.43 0.00 40.23 3.55
472 473 0.529337 CCAGCTATCCTGTGCGTCAG 60.529 60.000 0.00 2.30 40.06 3.51
473 474 0.970427 TCCAGCTATCCTGTGCGTCA 60.970 55.000 0.00 0.00 40.06 4.35
486 487 2.842496 TCTGTGGAGAATCATTCCAGCT 59.158 45.455 0.00 0.00 45.00 4.24
490 491 2.092753 TGGCTCTGTGGAGAATCATTCC 60.093 50.000 0.00 0.00 41.86 3.01
503 504 2.108976 CGTGGTGTGTGGCTCTGT 59.891 61.111 0.00 0.00 0.00 3.41
546 547 3.147595 TGATCCGGCGGAGTGAGG 61.148 66.667 33.82 2.28 34.05 3.86
560 561 0.333312 ACTGGAGACCGGAGAGTGAT 59.667 55.000 9.46 0.00 33.36 3.06
570 571 2.952116 ACTAGCTGGATACTGGAGACC 58.048 52.381 3.17 0.00 35.79 3.85
571 572 6.466885 TTTTACTAGCTGGATACTGGAGAC 57.533 41.667 3.17 0.00 35.79 3.36
592 593 1.391826 CCGTGTTGTTTTGCGCTTTTT 59.608 42.857 9.73 0.00 0.00 1.94
642 695 1.432270 CGTCCCGTCTACCGTCTACC 61.432 65.000 0.00 0.00 33.66 3.18
649 702 2.570181 CCACACGTCCCGTCTACC 59.430 66.667 0.00 0.00 38.32 3.18
650 703 2.570181 CCCACACGTCCCGTCTAC 59.430 66.667 0.00 0.00 38.32 2.59
651 704 3.376078 GCCCACACGTCCCGTCTA 61.376 66.667 0.00 0.00 38.32 2.59
674 727 4.504916 CTCTGGCTCGGCTGGACG 62.505 72.222 0.00 0.00 0.00 4.79
675 728 4.154347 CCTCTGGCTCGGCTGGAC 62.154 72.222 0.00 0.00 0.00 4.02
725 783 3.816090 GTGTGGGGTGTGGGGTGT 61.816 66.667 0.00 0.00 0.00 4.16
749 807 2.741985 CATGTGAAGCACGGCCGA 60.742 61.111 35.90 6.79 37.14 5.54
773 831 1.682257 GTTTGGCCTCCTCTGCTCT 59.318 57.895 3.32 0.00 0.00 4.09
795 861 3.311110 TGGAGAAGAACGGCGGCT 61.311 61.111 13.24 5.10 0.00 5.52
804 870 2.619931 TGAATCAGGTGGTGGAGAAGA 58.380 47.619 0.00 0.00 0.00 2.87
806 872 3.184628 AGATGAATCAGGTGGTGGAGAA 58.815 45.455 0.00 0.00 0.00 2.87
812 878 0.179000 GGCGAGATGAATCAGGTGGT 59.821 55.000 0.00 0.00 0.00 4.16
814 880 0.877649 CGGGCGAGATGAATCAGGTG 60.878 60.000 0.00 0.00 0.00 4.00
815 881 1.443407 CGGGCGAGATGAATCAGGT 59.557 57.895 0.00 0.00 0.00 4.00
819 1909 3.706668 GCGCGGGCGAGATGAATC 61.707 66.667 18.30 0.00 42.83 2.52
831 1921 2.820479 TCGGTTTTATGGGCGCGG 60.820 61.111 8.83 0.00 0.00 6.46
866 1956 0.916086 TGACACTGGTTGTTGGAGGT 59.084 50.000 0.00 0.00 39.17 3.85
881 1971 0.465460 GGGGACTGTTGTTGCTGACA 60.465 55.000 0.00 0.00 36.19 3.58
886 1976 2.551912 CGGTGGGGACTGTTGTTGC 61.552 63.158 0.00 0.00 0.00 4.17
887 1977 2.551912 GCGGTGGGGACTGTTGTTG 61.552 63.158 0.00 0.00 0.00 3.33
888 1978 2.203294 GCGGTGGGGACTGTTGTT 60.203 61.111 0.00 0.00 0.00 2.83
889 1979 4.265056 GGCGGTGGGGACTGTTGT 62.265 66.667 0.00 0.00 0.00 3.32
905 1995 0.764890 TCAGTTGAGGGTCTTGTGGG 59.235 55.000 0.00 0.00 0.00 4.61
907 1997 4.023707 GTGAATTCAGTTGAGGGTCTTGTG 60.024 45.833 8.80 0.00 0.00 3.33
910 2000 4.137543 GTGTGAATTCAGTTGAGGGTCTT 58.862 43.478 8.80 0.00 0.00 3.01
916 2006 2.349817 GCGTGGTGTGAATTCAGTTGAG 60.350 50.000 8.80 0.63 0.00 3.02
918 2008 1.334960 GGCGTGGTGTGAATTCAGTTG 60.335 52.381 8.80 0.00 0.00 3.16
920 2010 1.227999 CGGCGTGGTGTGAATTCAGT 61.228 55.000 8.80 0.00 0.00 3.41
923 2013 2.867472 CCGGCGTGGTGTGAATTC 59.133 61.111 6.01 0.00 0.00 2.17
936 2026 3.291101 TTGAGACTACGGCACCGGC 62.291 63.158 14.51 0.00 44.69 6.13
937 2027 1.445582 GTTGAGACTACGGCACCGG 60.446 63.158 14.51 0.00 44.69 5.28
938 2028 1.445582 GGTTGAGACTACGGCACCG 60.446 63.158 7.71 7.71 46.03 4.94
939 2029 1.079336 GGGTTGAGACTACGGCACC 60.079 63.158 0.00 0.00 0.00 5.01
940 2030 0.389948 CTGGGTTGAGACTACGGCAC 60.390 60.000 0.00 0.00 0.00 5.01
941 2031 1.972198 CTGGGTTGAGACTACGGCA 59.028 57.895 0.00 0.00 0.00 5.69
942 2032 1.448013 GCTGGGTTGAGACTACGGC 60.448 63.158 0.00 0.00 0.00 5.68
943 2033 0.108615 CAGCTGGGTTGAGACTACGG 60.109 60.000 5.57 0.00 0.00 4.02
944 2034 0.737715 GCAGCTGGGTTGAGACTACG 60.738 60.000 17.12 0.00 0.00 3.51
945 2035 0.610687 AGCAGCTGGGTTGAGACTAC 59.389 55.000 17.12 0.00 0.00 2.73
946 2036 0.898320 GAGCAGCTGGGTTGAGACTA 59.102 55.000 17.12 0.00 0.00 2.59
947 2037 1.676384 GAGCAGCTGGGTTGAGACT 59.324 57.895 17.12 0.23 0.00 3.24
948 2038 1.739562 CGAGCAGCTGGGTTGAGAC 60.740 63.158 17.12 0.00 0.00 3.36
949 2039 2.210013 ACGAGCAGCTGGGTTGAGA 61.210 57.895 17.12 0.00 32.51 3.27
950 2040 2.031516 CACGAGCAGCTGGGTTGAG 61.032 63.158 17.12 1.14 32.51 3.02
951 2041 2.031012 CACGAGCAGCTGGGTTGA 59.969 61.111 17.12 0.00 32.51 3.18
952 2042 3.730761 GCACGAGCAGCTGGGTTG 61.731 66.667 17.12 8.31 41.58 3.77
977 2067 4.785512 CTCGTTCTCGCTGCCGCT 62.786 66.667 0.00 0.00 36.96 5.52
985 2075 1.941734 GCATCGCTCCTCGTTCTCG 60.942 63.158 0.00 0.00 39.67 4.04
990 2080 3.069980 GACCAGCATCGCTCCTCGT 62.070 63.158 0.00 0.00 36.40 4.18
991 2081 2.279120 GACCAGCATCGCTCCTCG 60.279 66.667 0.00 0.00 36.40 4.63
992 2082 1.227205 CTGACCAGCATCGCTCCTC 60.227 63.158 0.00 0.00 36.40 3.71
993 2083 2.729479 CCTGACCAGCATCGCTCCT 61.729 63.158 0.00 0.00 36.40 3.69
994 2084 2.202987 CCTGACCAGCATCGCTCC 60.203 66.667 0.00 0.00 36.40 4.70
995 2085 1.227205 CTCCTGACCAGCATCGCTC 60.227 63.158 0.00 0.00 36.40 5.03
999 2089 2.894387 GCGCTCCTGACCAGCATC 60.894 66.667 0.00 0.00 36.61 3.91
1251 2347 3.612681 AGGTGGTGGTGGTCGTCG 61.613 66.667 0.00 0.00 0.00 5.12
1252 2348 2.030562 CAGGTGGTGGTGGTCGTC 59.969 66.667 0.00 0.00 0.00 4.20
1253 2349 4.250305 GCAGGTGGTGGTGGTCGT 62.250 66.667 0.00 0.00 0.00 4.34
1334 2430 1.619975 TCCTCCTCCTCCTCCTCGT 60.620 63.158 0.00 0.00 0.00 4.18
1356 2452 1.797933 CGTCTCTTGGTCAGCGTCG 60.798 63.158 0.00 0.00 0.00 5.12
1360 2456 0.037790 AAGCTCGTCTCTTGGTCAGC 60.038 55.000 0.00 0.00 0.00 4.26
1361 2457 2.064762 CAAAGCTCGTCTCTTGGTCAG 58.935 52.381 0.00 0.00 0.00 3.51
1362 2458 1.270305 CCAAAGCTCGTCTCTTGGTCA 60.270 52.381 4.69 0.00 0.00 4.02
1363 2459 1.433534 CCAAAGCTCGTCTCTTGGTC 58.566 55.000 4.69 0.00 0.00 4.02
1364 2460 0.035458 CCCAAAGCTCGTCTCTTGGT 59.965 55.000 10.85 0.00 0.00 3.67
1365 2461 1.301677 GCCCAAAGCTCGTCTCTTGG 61.302 60.000 5.73 5.73 38.99 3.61
1515 2611 4.537433 GAGGCCGCCAGGTAGCTG 62.537 72.222 15.13 15.13 40.50 4.24
1590 2686 4.760047 CCGTTGCAGGGGTCCTCG 62.760 72.222 0.00 0.00 0.00 4.63
1650 2746 2.048023 CGGCGAGGGTGGTACTGTA 61.048 63.158 0.00 0.00 0.00 2.74
1651 2747 3.379445 CGGCGAGGGTGGTACTGT 61.379 66.667 0.00 0.00 0.00 3.55
1652 2748 4.814294 GCGGCGAGGGTGGTACTG 62.814 72.222 12.98 0.00 0.00 2.74
1654 2750 4.509737 GAGCGGCGAGGGTGGTAC 62.510 72.222 12.98 0.00 0.00 3.34
1655 2751 4.753662 AGAGCGGCGAGGGTGGTA 62.754 66.667 12.98 0.00 0.00 3.25
1707 2803 3.260740 GGATCTGAGTTCTGAACTGCAG 58.739 50.000 26.47 26.53 43.03 4.41
1712 2808 2.755655 TCTCCGGATCTGAGTTCTGAAC 59.244 50.000 3.57 12.54 0.00 3.18
1735 2831 2.727916 CGGCGCCTTTGTTAGAACATTC 60.728 50.000 26.68 0.00 38.95 2.67
1738 2834 1.231958 CCGGCGCCTTTGTTAGAACA 61.232 55.000 26.68 0.00 37.08 3.18
1759 2855 0.934901 ACATTCCGATCATCGCGTCG 60.935 55.000 5.77 8.07 38.82 5.12
1760 2856 1.071239 CAACATTCCGATCATCGCGTC 60.071 52.381 5.77 0.00 38.82 5.19
1767 2863 1.003003 TCACCTGCAACATTCCGATCA 59.997 47.619 0.00 0.00 0.00 2.92
1769 2865 2.198827 TTCACCTGCAACATTCCGAT 57.801 45.000 0.00 0.00 0.00 4.18
1801 2897 0.183252 AGTAGTACTCCTCCGCCCTC 59.817 60.000 0.00 0.00 0.00 4.30
1873 2969 2.930562 ACCTCCCACACCAGCCTC 60.931 66.667 0.00 0.00 0.00 4.70
1912 3008 1.139095 CCGGTCGAAGTAGCTGGAC 59.861 63.158 0.00 0.00 0.00 4.02
2031 3127 3.384348 GGAACCCGGTGTAGCTCA 58.616 61.111 0.00 0.00 0.00 4.26
2088 3184 2.047179 GCGGCGAGGTTCCTTTCT 60.047 61.111 12.98 0.00 0.00 2.52
2089 3185 3.125573 GGCGGCGAGGTTCCTTTC 61.126 66.667 12.98 0.00 0.00 2.62
2107 3203 1.216710 CTTCAGAGAGGGACGGCAC 59.783 63.158 0.00 0.00 0.00 5.01
2108 3204 2.650116 GCTTCAGAGAGGGACGGCA 61.650 63.158 0.00 0.00 0.00 5.69
2109 3205 2.185608 GCTTCAGAGAGGGACGGC 59.814 66.667 0.00 0.00 0.00 5.68
2110 3206 0.967887 TCAGCTTCAGAGAGGGACGG 60.968 60.000 0.00 0.00 0.00 4.79
2111 3207 0.172352 GTCAGCTTCAGAGAGGGACG 59.828 60.000 0.00 0.00 0.00 4.79
2147 3243 0.312102 GGTCTGAAGCAAGCAACCAC 59.688 55.000 0.00 0.00 0.00 4.16
2148 3244 0.183492 AGGTCTGAAGCAAGCAACCA 59.817 50.000 0.00 0.00 0.00 3.67
2149 3245 1.268079 GAAGGTCTGAAGCAAGCAACC 59.732 52.381 0.00 0.00 0.00 3.77
2150 3246 1.949525 TGAAGGTCTGAAGCAAGCAAC 59.050 47.619 0.00 0.00 0.00 4.17
2151 3247 2.224606 CTGAAGGTCTGAAGCAAGCAA 58.775 47.619 0.00 0.00 0.00 3.91
2152 3248 1.141657 ACTGAAGGTCTGAAGCAAGCA 59.858 47.619 0.00 0.00 0.00 3.91
2153 3249 1.889545 ACTGAAGGTCTGAAGCAAGC 58.110 50.000 0.00 0.00 0.00 4.01
2154 3250 2.999355 GCTACTGAAGGTCTGAAGCAAG 59.001 50.000 0.00 0.00 0.00 4.01
2155 3251 2.368548 TGCTACTGAAGGTCTGAAGCAA 59.631 45.455 0.00 0.00 35.70 3.91
2156 3252 1.970640 TGCTACTGAAGGTCTGAAGCA 59.029 47.619 0.00 0.00 36.23 3.91
2183 3279 1.086696 CCGCCTACAAGGACAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
2184 3280 0.690762 ACCGCCTACAAGGACAATGT 59.309 50.000 0.00 0.00 37.67 2.71
2185 3281 1.338674 TGACCGCCTACAAGGACAATG 60.339 52.381 0.00 0.00 37.67 2.82
2186 3282 0.981183 TGACCGCCTACAAGGACAAT 59.019 50.000 0.00 0.00 37.67 2.71
2187 3283 0.320374 CTGACCGCCTACAAGGACAA 59.680 55.000 0.00 0.00 37.67 3.18
2225 4309 1.000955 ACACAGAAGTACAAGGCGGAG 59.999 52.381 0.00 0.00 0.00 4.63
2249 4333 0.881118 TCTGCAAGGATTTCAACGCC 59.119 50.000 0.00 0.00 0.00 5.68
2270 4354 0.106819 ACAGGCTCAATCTGATGGCC 60.107 55.000 16.59 16.59 42.74 5.36
2327 4411 3.123620 GTTCCTGCTGGAGCTGCG 61.124 66.667 17.54 0.00 44.24 5.18
2378 4462 4.736168 GCAACACTTAAAGATGTGGCAACA 60.736 41.667 0.00 0.00 43.97 3.33
2424 4508 0.537143 ATGCCGGTTTTCACTGCAGA 60.537 50.000 23.35 0.00 35.19 4.26
2439 4523 5.779529 AACCTGTCATATTGATTGATGCC 57.220 39.130 0.00 0.00 0.00 4.40
2554 4638 9.487790 TTTGTTTCAGAAATCTTTGTTTGTTCT 57.512 25.926 0.00 0.00 0.00 3.01
2595 4679 7.696992 TGAGTTTACTTCAGAAACCTTTTGT 57.303 32.000 0.00 0.00 37.48 2.83
2596 4680 8.980143 TTTGAGTTTACTTCAGAAACCTTTTG 57.020 30.769 0.00 0.00 37.48 2.44
2619 4703 3.071167 AGAAGGCGGACTAAGAACACTTT 59.929 43.478 0.00 0.00 0.00 2.66
2630 4714 3.071167 ACAAGTTTCTAAGAAGGCGGACT 59.929 43.478 0.00 0.00 0.00 3.85
2655 4739 9.810545 TTTAGGAAATTGTACACCTTTTTCAAG 57.189 29.630 7.96 0.00 34.42 3.02
2678 4762 7.946381 TGCATGGATATTGTACACCTTTTTA 57.054 32.000 0.00 0.00 0.00 1.52
2680 4764 6.849085 TTGCATGGATATTGTACACCTTTT 57.151 33.333 0.00 0.00 0.00 2.27
2684 4768 6.572519 ACAAATTGCATGGATATTGTACACC 58.427 36.000 13.91 0.00 29.89 4.16
2685 4769 7.897920 CAACAAATTGCATGGATATTGTACAC 58.102 34.615 15.27 0.00 31.33 2.90
2714 4816 9.719355 GGAAAAGTTTATTATGTGGGAACATTT 57.281 29.630 0.00 0.00 46.14 2.32
2738 4840 8.373220 CCCTTTACTAAAACAGTCTCTTTAGGA 58.627 37.037 12.51 4.66 38.76 2.94
2741 4843 7.072834 ACCCCCTTTACTAAAACAGTCTCTTTA 59.927 37.037 0.00 0.00 38.80 1.85
2756 4858 2.445525 TGCTGAAGAAACCCCCTTTACT 59.554 45.455 0.00 0.00 0.00 2.24
2762 4864 1.270305 GCTTTTGCTGAAGAAACCCCC 60.270 52.381 4.17 0.00 43.35 5.40
2793 4895 5.542779 ACTGAGGAGACTACATTTTGTGAC 58.457 41.667 0.00 0.00 44.43 3.67
2794 4896 5.808366 ACTGAGGAGACTACATTTTGTGA 57.192 39.130 0.00 0.00 44.43 3.58
2804 4906 4.325187 GGAGGGAAGTAACTGAGGAGACTA 60.325 50.000 0.00 0.00 44.43 2.59
2807 4909 2.382305 TGGAGGGAAGTAACTGAGGAGA 59.618 50.000 0.00 0.00 0.00 3.71
2817 4919 4.412199 CAGGGTAATGATTGGAGGGAAGTA 59.588 45.833 0.00 0.00 0.00 2.24
2822 4924 3.203040 AGTTCAGGGTAATGATTGGAGGG 59.797 47.826 0.00 0.00 0.00 4.30
2867 4969 4.451629 TTAGCCTATCGTAGCCTTATGC 57.548 45.455 0.00 0.00 41.71 3.14
2929 5031 3.437049 GTGATTGGAGGCAAGTAACTGAC 59.563 47.826 0.00 0.00 0.00 3.51
2943 5045 2.104622 TCAGTTCAGTGCAGTGATTGGA 59.895 45.455 24.41 17.64 0.00 3.53
2951 5053 2.423185 TGGTGTTTTCAGTTCAGTGCAG 59.577 45.455 0.00 0.00 0.00 4.41
2953 5055 3.181487 ACATGGTGTTTTCAGTTCAGTGC 60.181 43.478 0.00 0.00 0.00 4.40
2955 5057 5.650266 TGTTACATGGTGTTTTCAGTTCAGT 59.350 36.000 0.00 0.00 0.00 3.41
2988 5090 8.452868 TGGGTATTTAACATATCTTGCCCTTAT 58.547 33.333 0.00 0.00 33.83 1.73
2989 5091 7.722285 GTGGGTATTTAACATATCTTGCCCTTA 59.278 37.037 0.00 0.00 33.83 2.69
2990 5092 6.549736 GTGGGTATTTAACATATCTTGCCCTT 59.450 38.462 0.00 0.00 33.83 3.95
2992 5094 6.068670 AGTGGGTATTTAACATATCTTGCCC 58.931 40.000 0.00 0.00 0.00 5.36
2993 5095 8.685838 TTAGTGGGTATTTAACATATCTTGCC 57.314 34.615 0.00 0.00 0.00 4.52
3001 5103 8.856103 GGCATACAATTAGTGGGTATTTAACAT 58.144 33.333 0.00 0.00 0.00 2.71
3002 5104 7.285858 GGGCATACAATTAGTGGGTATTTAACA 59.714 37.037 0.00 0.00 0.00 2.41
3003 5105 7.504574 AGGGCATACAATTAGTGGGTATTTAAC 59.495 37.037 0.00 0.00 0.00 2.01
3004 5106 7.588169 AGGGCATACAATTAGTGGGTATTTAA 58.412 34.615 0.00 0.00 0.00 1.52
3005 5107 7.156694 AGGGCATACAATTAGTGGGTATTTA 57.843 36.000 0.00 0.00 0.00 1.40
3006 5108 6.025793 AGGGCATACAATTAGTGGGTATTT 57.974 37.500 0.00 0.00 0.00 1.40
3007 5109 5.663158 AGGGCATACAATTAGTGGGTATT 57.337 39.130 0.00 0.00 0.00 1.89
3008 5110 5.663158 AAGGGCATACAATTAGTGGGTAT 57.337 39.130 0.00 0.00 0.00 2.73
3009 5111 5.459982 AAAGGGCATACAATTAGTGGGTA 57.540 39.130 0.00 0.00 0.00 3.69
3010 5112 4.331159 AAAGGGCATACAATTAGTGGGT 57.669 40.909 0.00 0.00 0.00 4.51
3011 5113 4.278419 GCTAAAGGGCATACAATTAGTGGG 59.722 45.833 0.00 0.00 0.00 4.61
3012 5114 4.887071 TGCTAAAGGGCATACAATTAGTGG 59.113 41.667 0.00 0.00 37.29 4.00
3013 5115 5.356751 TGTGCTAAAGGGCATACAATTAGTG 59.643 40.000 0.00 0.00 44.34 2.74
3014 5116 5.505780 TGTGCTAAAGGGCATACAATTAGT 58.494 37.500 0.00 0.00 44.34 2.24
3015 5117 5.506317 GCTGTGCTAAAGGGCATACAATTAG 60.506 44.000 0.00 0.00 44.34 1.73
3018 5120 2.689983 GCTGTGCTAAAGGGCATACAAT 59.310 45.455 0.00 0.00 44.34 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.