Multiple sequence alignment - TraesCS4B01G342800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G342800 chr4B 100.000 3323 0 0 1 3323 636736253 636739575 0.000000e+00 6137.0
1 TraesCS4B01G342800 chr4B 89.489 352 25 6 2569 2918 471062685 471063026 5.090000e-118 435.0
2 TraesCS4B01G342800 chr4B 87.633 283 29 4 3046 3323 628110030 628109749 1.150000e-84 324.0
3 TraesCS4B01G342800 chr4B 100.000 34 0 0 2966 2999 169922033 169922066 2.770000e-06 63.9
4 TraesCS4B01G342800 chr4B 100.000 33 0 0 2928 2960 636703376 636703408 9.950000e-06 62.1
5 TraesCS4B01G342800 chr5A 91.679 2620 141 33 1 2571 675780027 675782618 0.000000e+00 3559.0
6 TraesCS4B01G342800 chr4D 93.957 2350 105 8 241 2573 496695039 496697368 0.000000e+00 3518.0
7 TraesCS4B01G342800 chr4D 93.522 247 16 0 1 247 496694770 496695016 5.240000e-98 368.0
8 TraesCS4B01G342800 chr4D 85.586 111 9 6 2967 3070 42192579 42192469 3.500000e-20 110.0
9 TraesCS4B01G342800 chr4D 93.182 44 3 0 2925 2968 496697406 496697449 7.700000e-07 65.8
10 TraesCS4B01G342800 chr1D 85.333 2625 279 55 16 2571 477239396 477241983 0.000000e+00 2617.0
11 TraesCS4B01G342800 chr1D 78.799 783 105 32 275 1032 477244065 477244811 1.400000e-128 470.0
12 TraesCS4B01G342800 chr1D 89.865 296 30 0 1707 2002 477238107 477238402 6.730000e-102 381.0
13 TraesCS4B01G342800 chr1D 84.466 206 19 5 2190 2382 477238443 477238648 1.220000e-44 191.0
14 TraesCS4B01G342800 chr1A 84.823 2662 288 61 16 2571 573440270 573442921 0.000000e+00 2571.0
15 TraesCS4B01G342800 chr1A 85.185 189 18 4 2204 2382 573392824 573393012 5.660000e-43 185.0
16 TraesCS4B01G342800 chr1A 87.500 144 8 5 2437 2571 573439936 573440078 1.230000e-34 158.0
17 TraesCS4B01G342800 chr1B 86.390 2388 234 56 241 2571 664806898 664809251 0.000000e+00 2525.0
18 TraesCS4B01G342800 chr1B 80.398 704 91 23 278 959 664809982 664810660 2.980000e-135 492.0
19 TraesCS4B01G342800 chr2D 90.057 352 23 8 2569 2918 572695658 572695999 2.350000e-121 446.0
20 TraesCS4B01G342800 chr2D 89.174 351 27 6 2569 2918 633203619 633203279 8.520000e-116 427.0
21 TraesCS4B01G342800 chr2D 79.231 130 11 13 2957 3071 649182357 649182485 3.550000e-10 76.8
22 TraesCS4B01G342800 chr7D 89.577 355 23 10 2569 2919 170231392 170231736 3.940000e-119 438.0
23 TraesCS4B01G342800 chr7D 95.122 41 1 1 2960 2999 610621411 610621371 2.770000e-06 63.9
24 TraesCS4B01G342800 chr6B 89.685 349 26 6 2569 2916 368478504 368478843 1.420000e-118 436.0
25 TraesCS4B01G342800 chr6B 89.112 349 28 6 2569 2916 674186822 674186483 3.060000e-115 425.0
26 TraesCS4B01G342800 chr6B 86.757 370 33 11 2967 3321 716573577 716573209 6.680000e-107 398.0
27 TraesCS4B01G342800 chr6B 85.484 372 36 13 2967 3323 641755911 641755543 4.050000e-99 372.0
28 TraesCS4B01G342800 chr6B 84.104 346 42 10 2578 2917 79305135 79304797 4.140000e-84 322.0
29 TraesCS4B01G342800 chr7B 89.429 350 25 10 2569 2916 609288749 609289088 6.590000e-117 431.0
30 TraesCS4B01G342800 chr7B 87.379 103 8 5 2968 3067 680667810 680667910 2.710000e-21 113.0
31 TraesCS4B01G342800 chr7B 82.828 99 7 8 2967 3056 254840362 254840459 2.750000e-11 80.5
32 TraesCS4B01G342800 chr5B 89.398 349 27 6 2569 2916 695727613 695727952 6.590000e-117 431.0
33 TraesCS4B01G342800 chr5D 87.887 355 34 8 2569 2917 467428037 467427686 3.090000e-110 409.0
34 TraesCS4B01G342800 chr3B 86.792 371 33 10 2968 3323 820474114 820474483 1.860000e-107 399.0
35 TraesCS4B01G342800 chr3B 83.191 351 44 15 2569 2916 395923492 395923830 1.160000e-79 307.0
36 TraesCS4B01G342800 chr2B 86.792 371 33 11 2968 3323 737937394 737937763 1.860000e-107 399.0
37 TraesCS4B01G342800 chr4A 82.817 355 40 15 2569 2915 726856126 726856467 6.970000e-77 298.0
38 TraesCS4B01G342800 chr4A 100.000 28 0 0 588 615 455308886 455308859 6.000000e-03 52.8
39 TraesCS4B01G342800 chr3A 72.078 924 175 61 1128 2023 434951130 434950262 2.020000e-47 200.0
40 TraesCS4B01G342800 chr3A 100.000 28 0 0 588 615 19177580 19177553 6.000000e-03 52.8
41 TraesCS4B01G342800 chr3D 82.883 111 10 6 2967 3069 47788340 47788449 1.270000e-14 91.6
42 TraesCS4B01G342800 chr7A 81.481 108 9 9 2967 3064 310594906 310595012 9.880000e-11 78.7
43 TraesCS4B01G342800 chr6A 92.683 41 1 2 2965 3004 201359994 201359955 1.290000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G342800 chr4B 636736253 636739575 3322 False 6137.000000 6137 100.000000 1 3323 1 chr4B.!!$F4 3322
1 TraesCS4B01G342800 chr5A 675780027 675782618 2591 False 3559.000000 3559 91.679000 1 2571 1 chr5A.!!$F1 2570
2 TraesCS4B01G342800 chr4D 496694770 496697449 2679 False 1317.266667 3518 93.553667 1 2968 3 chr4D.!!$F1 2967
3 TraesCS4B01G342800 chr1D 477238107 477244811 6704 False 914.750000 2617 84.615750 16 2571 4 chr1D.!!$F1 2555
4 TraesCS4B01G342800 chr1A 573439936 573442921 2985 False 1364.500000 2571 86.161500 16 2571 2 chr1A.!!$F2 2555
5 TraesCS4B01G342800 chr1B 664806898 664810660 3762 False 1508.500000 2525 83.394000 241 2571 2 chr1B.!!$F1 2330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 1709 1.382629 GGGCCCTAGTTTTCAGCCA 59.617 57.895 17.04 0.0 45.72 4.75 F
1339 2741 0.815734 GCTCTACCGCCAGTTCTACA 59.184 55.000 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 3146 1.037579 AGCACGATGTCGATGGGAGA 61.038 55.0 9.67 0.0 43.02 3.71 R
2592 4055 0.096628 CTCCGTCGGAGTGAGTAACG 59.903 60.0 29.66 5.1 44.25 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 1408 3.569701 CCAAAATTGACAGTGCAGTAGGT 59.430 43.478 0.00 0.00 0.00 3.08
232 1521 5.865552 AGGAATTGTTCTTTGCGATCAATTG 59.134 36.000 12.89 0.00 45.33 2.32
243 1532 9.176181 TCTTTGCGATCAATTGTTTTTAGTAAC 57.824 29.630 5.13 0.00 31.33 2.50
261 1580 6.013842 AGTAACTTATTTTTGCTGCTGGAC 57.986 37.500 0.00 0.00 0.00 4.02
266 1585 1.896220 TTTTTGCTGCTGGACTCGAT 58.104 45.000 0.00 0.00 0.00 3.59
353 1678 2.433145 CGTCACTCGTGCCATGCT 60.433 61.111 0.00 0.00 34.52 3.79
384 1709 1.382629 GGGCCCTAGTTTTCAGCCA 59.617 57.895 17.04 0.00 45.72 4.75
473 1806 8.978874 AGGTTCAAGAATGCACATATGTATTA 57.021 30.769 8.32 0.00 40.77 0.98
509 1844 4.634199 ACTGGCATGTTTTCCAATTCAAG 58.366 39.130 0.00 0.00 30.98 3.02
545 1882 2.361230 GGTTTCTCGGGCCCAAGG 60.361 66.667 24.92 11.10 0.00 3.61
566 1903 3.385755 GGATGCCATAATCATATTGGGGC 59.614 47.826 0.00 0.00 40.29 5.80
571 1908 5.015072 TGCCATAATCATATTGGGGCTTCTA 59.985 40.000 13.82 0.00 40.51 2.10
750 2100 2.983030 GTGTGCACCCAATCGGCA 60.983 61.111 15.69 0.00 33.26 5.69
781 2131 2.088423 CTACAAATACGCCCCAAAGCA 58.912 47.619 0.00 0.00 0.00 3.91
940 2309 2.781431 TACGCTGCCTCTCCAGTCCA 62.781 60.000 0.00 0.00 35.28 4.02
1016 2418 3.913573 CATGTACGCGTCCGCAGC 61.914 66.667 18.63 0.65 42.06 5.25
1297 2699 4.069232 CCTCCTTCGCGCTGGACA 62.069 66.667 14.34 0.00 0.00 4.02
1339 2741 0.815734 GCTCTACCGCCAGTTCTACA 59.184 55.000 0.00 0.00 0.00 2.74
1614 3016 3.467803 CTTCTCGTTTCAAAGGGTCACT 58.532 45.455 0.00 0.00 0.00 3.41
1637 3039 4.463879 CAGCCTGGACCAGCTCCG 62.464 72.222 16.72 3.48 43.03 4.63
1744 3146 1.383803 GCATCCACCTCTCTCCCCT 60.384 63.158 0.00 0.00 0.00 4.79
1756 3158 1.075970 CTCCCCTCTCCCATCGACA 60.076 63.158 0.00 0.00 0.00 4.35
1915 3317 2.509336 CCATGTCCGTGAGCCGTC 60.509 66.667 0.00 0.00 33.66 4.79
2035 3437 1.300963 CCACTGGCATACTGGTGCT 59.699 57.895 7.14 0.00 44.45 4.40
2121 3523 0.104304 AGTTTGTCCGCGTGTTCTCT 59.896 50.000 4.92 0.00 0.00 3.10
2154 3556 2.833582 GTCCAGGAGATCGGCGGA 60.834 66.667 7.21 0.00 0.00 5.54
2439 3888 1.524848 AGTCGTGAGTCAGTCGTCAT 58.475 50.000 0.00 0.00 0.00 3.06
2448 3897 6.568653 CGTGAGTCAGTCGTCATATGGATATT 60.569 42.308 2.13 0.00 0.00 1.28
2470 3919 6.428083 TTGGTCTAGGTCAATAAAGTGTCA 57.572 37.500 0.00 0.00 0.00 3.58
2474 3928 6.128254 GGTCTAGGTCAATAAAGTGTCAAAGC 60.128 42.308 0.00 0.00 0.00 3.51
2512 3969 5.702209 TGTCGTTATTCCTTCCTGGTTTTAC 59.298 40.000 0.00 0.00 37.07 2.01
2573 4036 3.599343 TCATGGTTGCTTGCTACTACTG 58.401 45.455 7.08 3.58 0.00 2.74
2575 4038 0.721718 GGTTGCTTGCTACTACTGCG 59.278 55.000 7.08 0.00 0.00 5.18
2576 4039 0.095417 GTTGCTTGCTACTACTGCGC 59.905 55.000 0.00 0.00 0.00 6.09
2577 4040 0.037326 TTGCTTGCTACTACTGCGCT 60.037 50.000 9.73 0.00 0.00 5.92
2578 4041 0.737367 TGCTTGCTACTACTGCGCTG 60.737 55.000 13.23 13.23 0.00 5.18
2579 4042 0.458543 GCTTGCTACTACTGCGCTGA 60.459 55.000 21.92 3.90 0.00 4.26
2580 4043 1.804372 GCTTGCTACTACTGCGCTGAT 60.804 52.381 21.92 7.85 0.00 2.90
2581 4044 2.123342 CTTGCTACTACTGCGCTGATC 58.877 52.381 21.92 3.74 0.00 2.92
2582 4045 0.385751 TGCTACTACTGCGCTGATCC 59.614 55.000 21.92 3.68 0.00 3.36
2584 4047 0.663688 CTACTACTGCGCTGATCCGT 59.336 55.000 21.92 13.02 0.00 4.69
2585 4048 1.871676 CTACTACTGCGCTGATCCGTA 59.128 52.381 21.92 13.40 0.00 4.02
2586 4049 1.319541 ACTACTGCGCTGATCCGTAT 58.680 50.000 21.92 0.00 0.00 3.06
2587 4050 1.001268 ACTACTGCGCTGATCCGTATG 60.001 52.381 21.92 4.17 0.00 2.39
2588 4051 1.001268 CTACTGCGCTGATCCGTATGT 60.001 52.381 21.92 0.00 0.00 2.29
2589 4052 1.029681 ACTGCGCTGATCCGTATGTA 58.970 50.000 21.92 0.00 0.00 2.29
2592 4055 1.001706 TGCGCTGATCCGTATGTAGTC 60.002 52.381 9.73 0.00 0.00 2.59
2593 4056 1.951792 CGCTGATCCGTATGTAGTCG 58.048 55.000 0.00 0.00 0.00 4.18
2594 4057 1.263484 CGCTGATCCGTATGTAGTCGT 59.737 52.381 0.00 0.00 0.00 4.34
2595 4058 2.286831 CGCTGATCCGTATGTAGTCGTT 60.287 50.000 0.00 0.00 0.00 3.85
2597 4060 4.217497 GCTGATCCGTATGTAGTCGTTAC 58.783 47.826 0.00 0.00 0.00 2.50
2598 4061 4.024218 GCTGATCCGTATGTAGTCGTTACT 60.024 45.833 0.00 0.00 39.91 2.24
2600 4063 5.118286 TGATCCGTATGTAGTCGTTACTCA 58.882 41.667 0.00 0.00 37.15 3.41
2601 4064 4.864916 TCCGTATGTAGTCGTTACTCAC 57.135 45.455 0.00 0.58 37.15 3.51
2603 4066 4.568359 TCCGTATGTAGTCGTTACTCACTC 59.432 45.833 0.00 0.00 37.15 3.51
2605 4068 4.549680 CGTATGTAGTCGTTACTCACTCCG 60.550 50.000 0.00 0.00 37.15 4.63
2608 4071 3.286901 GTCGTTACTCACTCCGACG 57.713 57.895 0.00 0.00 40.04 5.12
2609 4072 0.179205 GTCGTTACTCACTCCGACGG 60.179 60.000 7.84 7.84 40.04 4.79
2610 4073 0.320683 TCGTTACTCACTCCGACGGA 60.321 55.000 17.28 17.28 34.72 4.69
2625 4088 4.475135 GGAGGCCAGGGAGCGTTC 62.475 72.222 5.01 0.00 0.00 3.95
2628 4091 4.162690 GGCCAGGGAGCGTTCGAT 62.163 66.667 0.00 0.00 0.00 3.59
2629 4092 2.125106 GCCAGGGAGCGTTCGATT 60.125 61.111 0.00 0.00 0.00 3.34
2630 4093 1.143183 GCCAGGGAGCGTTCGATTA 59.857 57.895 0.00 0.00 0.00 1.75
2631 4094 1.152383 GCCAGGGAGCGTTCGATTAC 61.152 60.000 0.00 0.00 0.00 1.89
2632 4095 0.460311 CCAGGGAGCGTTCGATTACT 59.540 55.000 0.00 0.00 0.00 2.24
2633 4096 1.560923 CAGGGAGCGTTCGATTACTG 58.439 55.000 0.00 0.00 0.00 2.74
2637 4100 2.395654 GGAGCGTTCGATTACTGGATC 58.604 52.381 0.00 0.00 0.00 3.36
2639 4102 3.046390 GAGCGTTCGATTACTGGATCTG 58.954 50.000 0.00 0.00 0.00 2.90
2653 4116 3.191078 GGATCTGTCCAGTGGAAGATG 57.809 52.381 27.54 14.85 44.42 2.90
2654 4117 2.158842 GGATCTGTCCAGTGGAAGATGG 60.159 54.545 27.54 13.45 44.42 3.51
2655 4118 2.030027 TCTGTCCAGTGGAAGATGGT 57.970 50.000 15.09 0.00 37.84 3.55
2657 4120 3.099905 TCTGTCCAGTGGAAGATGGTAG 58.900 50.000 15.09 4.30 37.84 3.18
2659 4122 0.824109 TCCAGTGGAAGATGGTAGCG 59.176 55.000 10.20 0.00 37.84 4.26
2660 4123 0.811616 CCAGTGGAAGATGGTAGCGC 60.812 60.000 1.68 0.00 0.00 5.92
2661 4124 1.141881 AGTGGAAGATGGTAGCGCG 59.858 57.895 0.00 0.00 0.00 6.86
2663 4126 2.280186 GGAAGATGGTAGCGCGGG 60.280 66.667 8.83 0.00 0.00 6.13
2664 4127 2.792947 GGAAGATGGTAGCGCGGGA 61.793 63.158 8.83 0.00 0.00 5.14
2665 4128 1.367840 GAAGATGGTAGCGCGGGAT 59.632 57.895 8.83 0.00 0.00 3.85
2666 4129 0.601558 GAAGATGGTAGCGCGGGATA 59.398 55.000 8.83 0.00 0.00 2.59
2668 4131 1.267121 AGATGGTAGCGCGGGATATT 58.733 50.000 8.83 0.00 0.00 1.28
2669 4132 1.623811 AGATGGTAGCGCGGGATATTT 59.376 47.619 8.83 0.00 0.00 1.40
2670 4133 2.038557 AGATGGTAGCGCGGGATATTTT 59.961 45.455 8.83 0.00 0.00 1.82
2671 4134 2.335316 TGGTAGCGCGGGATATTTTT 57.665 45.000 8.83 0.00 0.00 1.94
2672 4135 3.472283 TGGTAGCGCGGGATATTTTTA 57.528 42.857 8.83 0.00 0.00 1.52
2673 4136 3.806380 TGGTAGCGCGGGATATTTTTAA 58.194 40.909 8.83 0.00 0.00 1.52
2674 4137 3.560896 TGGTAGCGCGGGATATTTTTAAC 59.439 43.478 8.83 0.00 0.00 2.01
2676 4139 1.600485 AGCGCGGGATATTTTTAACCG 59.400 47.619 8.83 0.00 46.78 4.44
2679 4142 2.355444 CGCGGGATATTTTTAACCGGTT 59.645 45.455 25.64 25.64 44.39 4.44
2680 4143 3.181498 CGCGGGATATTTTTAACCGGTTT 60.181 43.478 27.64 9.68 44.39 3.27
2681 4144 4.034975 CGCGGGATATTTTTAACCGGTTTA 59.965 41.667 27.64 14.70 44.39 2.01
2682 4145 5.273170 GCGGGATATTTTTAACCGGTTTAC 58.727 41.667 27.64 5.79 44.39 2.01
2683 4146 5.163673 GCGGGATATTTTTAACCGGTTTACA 60.164 40.000 27.64 6.62 44.39 2.41
2684 4147 6.459985 GCGGGATATTTTTAACCGGTTTACAT 60.460 38.462 27.64 14.48 44.39 2.29
2685 4148 7.255070 GCGGGATATTTTTAACCGGTTTACATA 60.255 37.037 27.64 16.09 44.39 2.29
2686 4149 8.284693 CGGGATATTTTTAACCGGTTTACATAG 58.715 37.037 27.64 2.81 40.79 2.23
2687 4150 8.077991 GGGATATTTTTAACCGGTTTACATAGC 58.922 37.037 27.64 17.46 0.00 2.97
2688 4151 7.799914 GGATATTTTTAACCGGTTTACATAGCG 59.200 37.037 27.64 0.00 38.65 4.26
2695 4158 2.546778 CGGTTTACATAGCGGTCATGT 58.453 47.619 12.19 12.19 39.82 3.21
2696 4159 3.708890 CGGTTTACATAGCGGTCATGTA 58.291 45.455 10.72 10.72 37.74 2.29
2697 4160 4.114073 CGGTTTACATAGCGGTCATGTAA 58.886 43.478 17.73 17.73 43.60 2.41
2698 4161 4.748102 CGGTTTACATAGCGGTCATGTAAT 59.252 41.667 20.18 0.00 44.28 1.89
2699 4162 5.921976 CGGTTTACATAGCGGTCATGTAATA 59.078 40.000 20.18 13.25 44.28 0.98
2700 4163 6.089016 CGGTTTACATAGCGGTCATGTAATAG 59.911 42.308 20.18 14.37 44.28 1.73
2701 4164 6.367969 GGTTTACATAGCGGTCATGTAATAGG 59.632 42.308 20.18 0.00 44.28 2.57
2702 4165 6.904463 TTACATAGCGGTCATGTAATAGGA 57.096 37.500 17.73 4.67 41.58 2.94
2703 4166 7.476540 TTACATAGCGGTCATGTAATAGGAT 57.523 36.000 17.73 0.00 41.58 3.24
2704 4167 8.584063 TTACATAGCGGTCATGTAATAGGATA 57.416 34.615 17.73 3.73 41.58 2.59
2705 4168 7.101652 ACATAGCGGTCATGTAATAGGATAG 57.898 40.000 0.00 0.00 34.88 2.08
2706 4169 6.096987 ACATAGCGGTCATGTAATAGGATAGG 59.903 42.308 0.00 0.00 34.88 2.57
2707 4170 3.195825 AGCGGTCATGTAATAGGATAGGC 59.804 47.826 0.00 0.00 0.00 3.93
2708 4171 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
2709 4172 4.562757 GCGGTCATGTAATAGGATAGGCAA 60.563 45.833 0.00 0.00 0.00 4.52
2710 4173 5.734720 CGGTCATGTAATAGGATAGGCAAT 58.265 41.667 0.00 0.00 0.00 3.56
2711 4174 6.173339 CGGTCATGTAATAGGATAGGCAATT 58.827 40.000 0.00 0.00 0.00 2.32
2712 4175 7.327975 CGGTCATGTAATAGGATAGGCAATTA 58.672 38.462 0.00 0.00 0.00 1.40
2713 4176 7.492669 CGGTCATGTAATAGGATAGGCAATTAG 59.507 40.741 0.00 0.00 0.00 1.73
2714 4177 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
2715 4178 9.726438 GTCATGTAATAGGATAGGCAATTAGTT 57.274 33.333 0.00 0.00 0.00 2.24
2729 4192 8.879427 AGGCAATTAGTTTACCTATCTTTGTT 57.121 30.769 0.00 0.00 0.00 2.83
2730 4193 9.309224 AGGCAATTAGTTTACCTATCTTTGTTT 57.691 29.630 0.00 0.00 0.00 2.83
2731 4194 9.923143 GGCAATTAGTTTACCTATCTTTGTTTT 57.077 29.630 0.00 0.00 0.00 2.43
2739 4202 3.689649 ACCTATCTTTGTTTTGCTAGCCG 59.310 43.478 13.29 0.00 0.00 5.52
2744 4207 3.129638 TCTTTGTTTTGCTAGCCGTTTGT 59.870 39.130 13.29 0.00 0.00 2.83
2754 4217 4.026226 CCGTTTGTGGCTTTTGGC 57.974 55.556 0.00 0.00 46.23 4.52
2767 4230 3.768406 GCTTTTGGCCCTTTTGTTTTTG 58.232 40.909 0.00 0.00 34.27 2.44
2768 4231 3.428725 GCTTTTGGCCCTTTTGTTTTTGG 60.429 43.478 0.00 0.00 34.27 3.28
2769 4232 1.756430 TTGGCCCTTTTGTTTTTGGC 58.244 45.000 0.00 0.00 41.42 4.52
2771 4234 0.462937 GGCCCTTTTGTTTTTGGCGT 60.463 50.000 0.00 0.00 43.09 5.68
2772 4235 1.374560 GCCCTTTTGTTTTTGGCGTT 58.625 45.000 0.00 0.00 31.55 4.84
2773 4236 1.063321 GCCCTTTTGTTTTTGGCGTTG 59.937 47.619 0.00 0.00 31.55 4.10
2774 4237 2.351455 CCCTTTTGTTTTTGGCGTTGT 58.649 42.857 0.00 0.00 0.00 3.32
2775 4238 2.095053 CCCTTTTGTTTTTGGCGTTGTG 59.905 45.455 0.00 0.00 0.00 3.33
2776 4239 2.996621 CCTTTTGTTTTTGGCGTTGTGA 59.003 40.909 0.00 0.00 0.00 3.58
2777 4240 3.181525 CCTTTTGTTTTTGGCGTTGTGAC 60.182 43.478 0.00 0.00 0.00 3.67
2778 4241 3.305398 TTTGTTTTTGGCGTTGTGACT 57.695 38.095 0.00 0.00 0.00 3.41
2779 4242 2.553079 TGTTTTTGGCGTTGTGACTC 57.447 45.000 0.00 0.00 0.00 3.36
2780 4243 2.088423 TGTTTTTGGCGTTGTGACTCT 58.912 42.857 0.00 0.00 0.00 3.24
2781 4244 2.490115 TGTTTTTGGCGTTGTGACTCTT 59.510 40.909 0.00 0.00 0.00 2.85
2782 4245 3.057174 TGTTTTTGGCGTTGTGACTCTTT 60.057 39.130 0.00 0.00 0.00 2.52
2784 4247 1.745232 TTGGCGTTGTGACTCTTTGT 58.255 45.000 0.00 0.00 0.00 2.83
2786 4249 1.295792 GGCGTTGTGACTCTTTGTGA 58.704 50.000 0.00 0.00 0.00 3.58
2788 4251 1.333258 GCGTTGTGACTCTTTGTGAGC 60.333 52.381 0.00 0.00 46.41 4.26
2789 4252 2.205074 CGTTGTGACTCTTTGTGAGCT 58.795 47.619 0.00 0.00 46.41 4.09
2790 4253 2.609459 CGTTGTGACTCTTTGTGAGCTT 59.391 45.455 0.00 0.00 46.41 3.74
2791 4254 3.544834 CGTTGTGACTCTTTGTGAGCTTG 60.545 47.826 0.00 0.00 46.41 4.01
2792 4255 3.266510 TGTGACTCTTTGTGAGCTTGT 57.733 42.857 0.00 0.00 46.41 3.16
2794 4257 2.219674 GTGACTCTTTGTGAGCTTGTCG 59.780 50.000 0.00 0.00 46.41 4.35
2795 4258 2.159099 TGACTCTTTGTGAGCTTGTCGT 60.159 45.455 0.00 0.00 46.41 4.34
2798 4261 4.632153 ACTCTTTGTGAGCTTGTCGTTAT 58.368 39.130 0.00 0.00 46.41 1.89
2799 4262 4.686554 ACTCTTTGTGAGCTTGTCGTTATC 59.313 41.667 0.00 0.00 46.41 1.75
2800 4263 4.883083 TCTTTGTGAGCTTGTCGTTATCT 58.117 39.130 0.00 0.00 0.00 1.98
2801 4264 5.297547 TCTTTGTGAGCTTGTCGTTATCTT 58.702 37.500 0.00 0.00 0.00 2.40
2803 4266 3.990092 TGTGAGCTTGTCGTTATCTTGT 58.010 40.909 0.00 0.00 0.00 3.16
2806 4269 5.295787 TGTGAGCTTGTCGTTATCTTGTTTT 59.704 36.000 0.00 0.00 0.00 2.43
2807 4270 5.846473 GTGAGCTTGTCGTTATCTTGTTTTC 59.154 40.000 0.00 0.00 0.00 2.29
2809 4272 5.990408 AGCTTGTCGTTATCTTGTTTTCAG 58.010 37.500 0.00 0.00 0.00 3.02
2812 4275 6.292919 GCTTGTCGTTATCTTGTTTTCAGACT 60.293 38.462 0.00 0.00 0.00 3.24
2813 4276 7.548196 TTGTCGTTATCTTGTTTTCAGACTT 57.452 32.000 0.00 0.00 0.00 3.01
2814 4277 7.548196 TGTCGTTATCTTGTTTTCAGACTTT 57.452 32.000 0.00 0.00 0.00 2.66
2815 4278 8.651391 TGTCGTTATCTTGTTTTCAGACTTTA 57.349 30.769 0.00 0.00 0.00 1.85
2816 4279 9.100554 TGTCGTTATCTTGTTTTCAGACTTTAA 57.899 29.630 0.00 0.00 0.00 1.52
2817 4280 9.925268 GTCGTTATCTTGTTTTCAGACTTTAAA 57.075 29.630 0.00 0.00 0.00 1.52
2823 4286 8.980143 TCTTGTTTTCAGACTTTAAAACCTTG 57.020 30.769 15.44 8.92 42.32 3.61
2824 4287 8.581578 TCTTGTTTTCAGACTTTAAAACCTTGT 58.418 29.630 15.44 0.00 42.32 3.16
2825 4288 9.203421 CTTGTTTTCAGACTTTAAAACCTTGTT 57.797 29.630 15.44 0.00 42.32 2.83
2826 4289 8.527567 TGTTTTCAGACTTTAAAACCTTGTTG 57.472 30.769 15.44 0.00 42.32 3.33
2827 4290 8.361139 TGTTTTCAGACTTTAAAACCTTGTTGA 58.639 29.630 15.44 0.00 42.32 3.18
2828 4291 9.198837 GTTTTCAGACTTTAAAACCTTGTTGAA 57.801 29.630 10.09 0.00 38.87 2.69
2829 4292 8.751302 TTTCAGACTTTAAAACCTTGTTGAAC 57.249 30.769 0.00 0.00 0.00 3.18
2830 4293 7.455641 TCAGACTTTAAAACCTTGTTGAACA 57.544 32.000 0.00 0.00 0.00 3.18
2831 4294 7.309920 TCAGACTTTAAAACCTTGTTGAACAC 58.690 34.615 0.00 0.00 0.00 3.32
2832 4295 6.530181 CAGACTTTAAAACCTTGTTGAACACC 59.470 38.462 0.00 0.00 0.00 4.16
2833 4296 6.436218 AGACTTTAAAACCTTGTTGAACACCT 59.564 34.615 0.00 0.00 0.00 4.00
2834 4297 6.999950 ACTTTAAAACCTTGTTGAACACCTT 58.000 32.000 0.00 0.00 0.00 3.50
2835 4298 7.446769 ACTTTAAAACCTTGTTGAACACCTTT 58.553 30.769 0.00 0.00 0.00 3.11
2836 4299 8.586744 ACTTTAAAACCTTGTTGAACACCTTTA 58.413 29.630 0.00 0.00 0.00 1.85
2837 4300 9.594478 CTTTAAAACCTTGTTGAACACCTTTAT 57.406 29.630 0.00 0.00 0.00 1.40
2838 4301 9.945904 TTTAAAACCTTGTTGAACACCTTTATT 57.054 25.926 0.00 0.00 0.00 1.40
2839 4302 9.945904 TTAAAACCTTGTTGAACACCTTTATTT 57.054 25.926 0.00 0.00 0.00 1.40
2856 4319 9.974980 ACCTTTATTTATTTATAAATGTGGCCG 57.025 29.630 18.98 4.39 41.58 6.13
2857 4320 9.974980 CCTTTATTTATTTATAAATGTGGCCGT 57.025 29.630 18.98 3.20 41.58 5.68
2866 4329 0.463654 AATGTGGCCGTATGCATCGT 60.464 50.000 0.19 0.00 43.89 3.73
2880 4343 1.766069 CATCGTATGCATCGTTCCGA 58.234 50.000 0.19 5.14 41.13 4.55
2889 4352 1.227380 ATCGTTCCGATGCAGAGGC 60.227 57.895 5.43 0.00 45.24 4.70
2890 4353 2.960957 ATCGTTCCGATGCAGAGGCG 62.961 60.000 5.43 4.98 45.24 5.52
2891 4354 2.892425 GTTCCGATGCAGAGGCGG 60.892 66.667 12.24 12.24 45.35 6.13
2892 4355 4.161295 TTCCGATGCAGAGGCGGG 62.161 66.667 16.62 1.70 44.87 6.13
2896 4359 3.474570 GATGCAGAGGCGGGGAGT 61.475 66.667 0.00 0.00 45.35 3.85
2897 4360 3.453070 GATGCAGAGGCGGGGAGTC 62.453 68.421 0.00 0.00 45.35 3.36
2898 4361 3.991924 ATGCAGAGGCGGGGAGTCT 62.992 63.158 0.00 0.00 45.35 3.24
2963 4426 1.789078 GCCTGTGCGCTCCCATTATG 61.789 60.000 9.73 0.00 0.00 1.90
2968 4431 3.138304 TGTGCGCTCCCATTATGATTAC 58.862 45.455 9.73 0.00 0.00 1.89
2969 4432 3.181455 TGTGCGCTCCCATTATGATTACT 60.181 43.478 9.73 0.00 0.00 2.24
2970 4433 4.039852 TGTGCGCTCCCATTATGATTACTA 59.960 41.667 9.73 0.00 0.00 1.82
2971 4434 4.627467 GTGCGCTCCCATTATGATTACTAG 59.373 45.833 9.73 0.00 0.00 2.57
2972 4435 4.184629 GCGCTCCCATTATGATTACTAGG 58.815 47.826 0.00 0.00 0.00 3.02
2973 4436 4.322801 GCGCTCCCATTATGATTACTAGGT 60.323 45.833 0.00 0.00 0.00 3.08
2974 4437 5.105473 GCGCTCCCATTATGATTACTAGGTA 60.105 44.000 0.00 0.00 0.00 3.08
2975 4438 6.565234 CGCTCCCATTATGATTACTAGGTAG 58.435 44.000 0.00 0.00 0.00 3.18
2976 4439 6.405953 CGCTCCCATTATGATTACTAGGTAGG 60.406 46.154 0.00 0.00 0.00 3.18
2977 4440 6.668283 GCTCCCATTATGATTACTAGGTAGGA 59.332 42.308 0.00 0.00 0.00 2.94
2978 4441 7.180408 GCTCCCATTATGATTACTAGGTAGGAA 59.820 40.741 0.00 0.00 0.00 3.36
2979 4442 8.666129 TCCCATTATGATTACTAGGTAGGAAG 57.334 38.462 0.00 0.00 27.87 3.46
2981 4444 8.314751 CCCATTATGATTACTAGGTAGGAAGTG 58.685 40.741 0.00 0.00 27.87 3.16
2982 4445 7.819900 CCATTATGATTACTAGGTAGGAAGTGC 59.180 40.741 0.00 0.00 27.87 4.40
2983 4446 4.913335 TGATTACTAGGTAGGAAGTGCG 57.087 45.455 0.00 0.00 27.87 5.34
2984 4447 3.635373 TGATTACTAGGTAGGAAGTGCGG 59.365 47.826 0.00 0.00 27.87 5.69
2986 4449 0.324460 ACTAGGTAGGAAGTGCGGCT 60.324 55.000 0.00 0.00 0.00 5.52
2987 4450 0.824759 CTAGGTAGGAAGTGCGGCTT 59.175 55.000 0.00 0.00 40.76 4.35
2989 4452 2.399356 GGTAGGAAGTGCGGCTTGC 61.399 63.158 0.00 4.58 44.59 4.01
2990 4453 2.046314 TAGGAAGTGCGGCTTGCC 60.046 61.111 0.00 0.75 45.25 4.52
2991 4454 3.950794 TAGGAAGTGCGGCTTGCCG 62.951 63.158 27.32 27.32 45.25 5.69
3010 4473 4.065281 ACCCGGTGCTGCGAGTAC 62.065 66.667 0.00 0.00 0.00 2.73
3011 4474 4.063967 CCCGGTGCTGCGAGTACA 62.064 66.667 0.00 0.00 32.12 2.90
3013 4476 2.258591 CGGTGCTGCGAGTACAGT 59.741 61.111 0.00 0.00 39.96 3.55
3015 4478 1.289066 GGTGCTGCGAGTACAGTCA 59.711 57.895 0.00 0.00 39.96 3.41
3016 4479 0.108615 GGTGCTGCGAGTACAGTCAT 60.109 55.000 0.00 0.00 39.96 3.06
3017 4480 1.134367 GGTGCTGCGAGTACAGTCATA 59.866 52.381 0.00 0.00 39.96 2.15
3018 4481 2.223829 GGTGCTGCGAGTACAGTCATAT 60.224 50.000 0.00 0.00 39.96 1.78
3019 4482 3.046390 GTGCTGCGAGTACAGTCATATC 58.954 50.000 0.00 0.00 39.96 1.63
3020 4483 2.034685 TGCTGCGAGTACAGTCATATCC 59.965 50.000 0.00 0.00 39.96 2.59
3021 4484 2.034685 GCTGCGAGTACAGTCATATCCA 59.965 50.000 0.00 0.00 39.96 3.41
3022 4485 3.490933 GCTGCGAGTACAGTCATATCCAA 60.491 47.826 0.00 0.00 39.96 3.53
3023 4486 4.797604 GCTGCGAGTACAGTCATATCCAAT 60.798 45.833 0.00 0.00 39.96 3.16
3024 4487 4.871513 TGCGAGTACAGTCATATCCAATC 58.128 43.478 0.00 0.00 0.00 2.67
3027 4490 4.238514 GAGTACAGTCATATCCAATCCGC 58.761 47.826 0.00 0.00 0.00 5.54
3028 4491 3.898123 AGTACAGTCATATCCAATCCGCT 59.102 43.478 0.00 0.00 0.00 5.52
3030 4493 5.717178 AGTACAGTCATATCCAATCCGCTAT 59.283 40.000 0.00 0.00 0.00 2.97
3031 4494 6.890268 AGTACAGTCATATCCAATCCGCTATA 59.110 38.462 0.00 0.00 0.00 1.31
3033 4496 7.898014 ACAGTCATATCCAATCCGCTATATA 57.102 36.000 0.00 0.00 0.00 0.86
3035 4498 7.561722 ACAGTCATATCCAATCCGCTATATAGT 59.438 37.037 11.38 0.00 0.00 2.12
3036 4499 8.079203 CAGTCATATCCAATCCGCTATATAGTC 58.921 40.741 11.38 3.33 0.00 2.59
3037 4500 7.780271 AGTCATATCCAATCCGCTATATAGTCA 59.220 37.037 11.38 0.00 0.00 3.41
3039 4502 9.807921 TCATATCCAATCCGCTATATAGTCATA 57.192 33.333 11.38 0.00 0.00 2.15
3042 4505 8.712228 ATCCAATCCGCTATATAGTCATATGA 57.288 34.615 11.38 0.00 0.00 2.15
3043 4506 8.171164 TCCAATCCGCTATATAGTCATATGAG 57.829 38.462 5.42 0.00 0.00 2.90
3044 4507 6.865726 CCAATCCGCTATATAGTCATATGAGC 59.134 42.308 5.42 3.23 0.00 4.26
3045 4508 7.428826 CAATCCGCTATATAGTCATATGAGCA 58.571 38.462 5.42 0.00 30.82 4.26
3046 4509 7.773489 ATCCGCTATATAGTCATATGAGCAT 57.227 36.000 5.42 5.02 30.82 3.79
3047 4510 7.588497 TCCGCTATATAGTCATATGAGCATT 57.412 36.000 5.42 0.00 30.82 3.56
3049 4512 6.145209 CCGCTATATAGTCATATGAGCATTGC 59.855 42.308 5.42 0.00 30.82 3.56
3050 4513 6.698766 CGCTATATAGTCATATGAGCATTGCA 59.301 38.462 11.91 0.00 30.82 4.08
3051 4514 7.223387 CGCTATATAGTCATATGAGCATTGCAA 59.777 37.037 11.91 0.00 30.82 4.08
3052 4515 8.886719 GCTATATAGTCATATGAGCATTGCAAA 58.113 33.333 11.91 0.00 31.26 3.68
3057 4520 7.754851 AGTCATATGAGCATTGCAAATATGA 57.245 32.000 26.35 26.35 40.18 2.15
3059 4522 8.635328 AGTCATATGAGCATTGCAAATATGAAA 58.365 29.630 29.03 16.83 41.99 2.69
3060 4523 9.251792 GTCATATGAGCATTGCAAATATGAAAA 57.748 29.630 29.03 16.38 41.99 2.29
3065 4528 8.133754 TGAGCATTGCAAATATGAAAAATAGC 57.866 30.769 11.91 0.00 0.00 2.97
3066 4529 7.764901 TGAGCATTGCAAATATGAAAAATAGCA 59.235 29.630 11.91 0.00 0.00 3.49
3067 4530 8.495361 AGCATTGCAAATATGAAAAATAGCAA 57.505 26.923 11.91 0.00 43.69 3.91
3087 4550 9.956720 ATAGCAATGAATAGTTATTGTTCAAGC 57.043 29.630 9.09 6.80 39.84 4.01
3091 4585 9.577110 CAATGAATAGTTATTGTTCAAGCATGT 57.423 29.630 0.00 0.00 39.84 3.21
3099 4593 9.248291 AGTTATTGTTCAAGCATGTAAACAAAG 57.752 29.630 11.43 0.00 42.80 2.77
3103 4597 9.762933 ATTGTTCAAGCATGTAAACAAAGTATT 57.237 25.926 11.43 0.00 42.80 1.89
3112 4606 9.739786 GCATGTAAACAAAGTATTAATTGTTGC 57.260 29.630 5.84 2.79 46.09 4.17
3113 4607 9.936108 CATGTAAACAAAGTATTAATTGTTGCG 57.064 29.630 5.84 0.00 46.09 4.85
3118 4612 9.522804 AAACAAAGTATTAATTGTTGCGAAAGA 57.477 25.926 5.84 0.00 46.09 2.52
3119 4613 9.522804 AACAAAGTATTAATTGTTGCGAAAGAA 57.477 25.926 4.51 0.00 45.34 2.52
3120 4614 9.522804 ACAAAGTATTAATTGTTGCGAAAGAAA 57.477 25.926 0.00 0.00 36.39 2.52
3125 4619 9.726034 GTATTAATTGTTGCGAAAGAAAATGTG 57.274 29.630 0.00 0.00 0.00 3.21
3126 4620 5.655893 AATTGTTGCGAAAGAAAATGTGG 57.344 34.783 0.00 0.00 0.00 4.17
3127 4621 3.791973 TGTTGCGAAAGAAAATGTGGT 57.208 38.095 0.00 0.00 0.00 4.16
3129 4623 3.862267 TGTTGCGAAAGAAAATGTGGTTG 59.138 39.130 0.00 0.00 0.00 3.77
3130 4624 2.468831 TGCGAAAGAAAATGTGGTTGC 58.531 42.857 0.00 0.00 0.00 4.17
3131 4625 1.792367 GCGAAAGAAAATGTGGTTGCC 59.208 47.619 0.00 0.00 0.00 4.52
3132 4626 2.050691 CGAAAGAAAATGTGGTTGCCG 58.949 47.619 0.00 0.00 0.00 5.69
3133 4627 2.287308 CGAAAGAAAATGTGGTTGCCGA 60.287 45.455 0.00 0.00 0.00 5.54
3134 4628 2.793278 AAGAAAATGTGGTTGCCGAC 57.207 45.000 0.00 0.00 0.00 4.79
3135 4629 1.686355 AGAAAATGTGGTTGCCGACA 58.314 45.000 0.00 0.00 0.00 4.35
3136 4630 2.028130 AGAAAATGTGGTTGCCGACAA 58.972 42.857 0.00 0.00 0.00 3.18
3139 4633 0.602562 AATGTGGTTGCCGACAATGG 59.397 50.000 0.00 0.00 38.27 3.16
3140 4634 0.251121 ATGTGGTTGCCGACAATGGA 60.251 50.000 0.00 0.00 38.27 3.41
3141 4635 0.251121 TGTGGTTGCCGACAATGGAT 60.251 50.000 0.00 0.00 38.27 3.41
3142 4636 0.451783 GTGGTTGCCGACAATGGATC 59.548 55.000 0.00 0.00 38.27 3.36
3143 4637 0.037447 TGGTTGCCGACAATGGATCA 59.963 50.000 0.00 0.00 38.27 2.92
3144 4638 0.734889 GGTTGCCGACAATGGATCAG 59.265 55.000 0.00 0.00 38.27 2.90
3146 4640 1.398390 GTTGCCGACAATGGATCAGTC 59.602 52.381 0.00 0.00 38.27 3.51
3147 4641 0.107703 TGCCGACAATGGATCAGTCC 60.108 55.000 0.00 0.00 45.31 3.85
3156 4650 3.179925 GGATCAGTCCAATGCAGCA 57.820 52.632 0.00 0.00 44.42 4.41
3158 4652 1.820519 GGATCAGTCCAATGCAGCAAA 59.179 47.619 0.00 0.00 44.42 3.68
3159 4653 2.429610 GGATCAGTCCAATGCAGCAAAT 59.570 45.455 0.00 0.00 44.42 2.32
3162 4656 5.394443 GGATCAGTCCAATGCAGCAAATTTA 60.394 40.000 0.00 0.00 44.42 1.40
3164 4658 4.280425 TCAGTCCAATGCAGCAAATTTACA 59.720 37.500 0.00 0.00 0.00 2.41
3165 4659 4.624024 CAGTCCAATGCAGCAAATTTACAG 59.376 41.667 0.00 0.00 0.00 2.74
3167 4661 4.860907 GTCCAATGCAGCAAATTTACAGAG 59.139 41.667 0.00 0.00 0.00 3.35
3169 4663 4.239304 CAATGCAGCAAATTTACAGAGCA 58.761 39.130 0.00 5.90 35.03 4.26
3170 4664 4.730949 ATGCAGCAAATTTACAGAGCAT 57.269 36.364 0.00 9.06 36.71 3.79
3171 4665 4.524316 TGCAGCAAATTTACAGAGCATT 57.476 36.364 0.00 0.00 0.00 3.56
3175 4669 5.579511 GCAGCAAATTTACAGAGCATTTCAT 59.420 36.000 0.00 0.00 0.00 2.57
3176 4670 6.237755 GCAGCAAATTTACAGAGCATTTCATC 60.238 38.462 0.00 0.00 0.00 2.92
3177 4671 6.255020 CAGCAAATTTACAGAGCATTTCATCC 59.745 38.462 0.00 0.00 0.00 3.51
3178 4672 6.071221 AGCAAATTTACAGAGCATTTCATCCA 60.071 34.615 0.00 0.00 0.00 3.41
3179 4673 6.591062 GCAAATTTACAGAGCATTTCATCCAA 59.409 34.615 0.00 0.00 0.00 3.53
3181 4675 4.970662 TTACAGAGCATTTCATCCAAGC 57.029 40.909 0.00 0.00 0.00 4.01
3183 4677 3.159472 ACAGAGCATTTCATCCAAGCAA 58.841 40.909 0.00 0.00 0.00 3.91
3184 4678 3.575256 ACAGAGCATTTCATCCAAGCAAA 59.425 39.130 0.00 0.00 0.00 3.68
3185 4679 4.174009 CAGAGCATTTCATCCAAGCAAAG 58.826 43.478 0.00 0.00 0.00 2.77
3187 4681 2.004733 GCATTTCATCCAAGCAAAGCC 58.995 47.619 0.00 0.00 0.00 4.35
3188 4682 2.613474 GCATTTCATCCAAGCAAAGCCA 60.613 45.455 0.00 0.00 0.00 4.75
3190 4684 3.834489 TTTCATCCAAGCAAAGCCAAA 57.166 38.095 0.00 0.00 0.00 3.28
3191 4685 3.389925 TTCATCCAAGCAAAGCCAAAG 57.610 42.857 0.00 0.00 0.00 2.77
3192 4686 1.619827 TCATCCAAGCAAAGCCAAAGG 59.380 47.619 0.00 0.00 0.00 3.11
3212 4706 3.324846 AGGCAAGCAATCAGATATACCGA 59.675 43.478 0.00 0.00 0.00 4.69
3213 4707 4.065088 GGCAAGCAATCAGATATACCGAA 58.935 43.478 0.00 0.00 0.00 4.30
3214 4708 4.515191 GGCAAGCAATCAGATATACCGAAA 59.485 41.667 0.00 0.00 0.00 3.46
3216 4710 5.683859 CAAGCAATCAGATATACCGAAAGC 58.316 41.667 0.00 0.00 0.00 3.51
3217 4711 4.960938 AGCAATCAGATATACCGAAAGCA 58.039 39.130 0.00 0.00 0.00 3.91
3218 4712 5.368145 AGCAATCAGATATACCGAAAGCAA 58.632 37.500 0.00 0.00 0.00 3.91
3220 4714 6.017605 AGCAATCAGATATACCGAAAGCAAAG 60.018 38.462 0.00 0.00 0.00 2.77
3221 4715 6.662616 CAATCAGATATACCGAAAGCAAAGG 58.337 40.000 0.00 0.00 0.00 3.11
3222 4716 5.607939 TCAGATATACCGAAAGCAAAGGA 57.392 39.130 0.00 0.00 0.00 3.36
3223 4717 5.601662 TCAGATATACCGAAAGCAAAGGAG 58.398 41.667 0.00 0.00 0.00 3.69
3224 4718 4.212214 CAGATATACCGAAAGCAAAGGAGC 59.788 45.833 0.00 0.00 0.00 4.70
3225 4719 2.489938 ATACCGAAAGCAAAGGAGCA 57.510 45.000 0.00 0.00 36.85 4.26
3230 4792 3.181466 ACCGAAAGCAAAGGAGCATTTTT 60.181 39.130 0.00 0.00 36.85 1.94
3233 4795 4.746611 CGAAAGCAAAGGAGCATTTTTCTT 59.253 37.500 0.00 0.00 36.85 2.52
3239 4801 7.047271 AGCAAAGGAGCATTTTTCTTACAAAA 58.953 30.769 0.00 0.00 36.85 2.44
3240 4802 7.552330 AGCAAAGGAGCATTTTTCTTACAAAAA 59.448 29.630 0.00 0.00 36.85 1.94
3263 4825 9.613428 AAAATAAGTTTAGACGATGGATCATCA 57.387 29.630 8.38 0.00 40.54 3.07
3264 4826 8.594881 AATAAGTTTAGACGATGGATCATCAC 57.405 34.615 8.38 2.49 40.54 3.06
3265 4827 5.860941 AGTTTAGACGATGGATCATCACT 57.139 39.130 8.38 8.53 40.54 3.41
3267 4829 7.348080 AGTTTAGACGATGGATCATCACTAA 57.652 36.000 14.33 14.33 40.54 2.24
3268 4830 7.429633 AGTTTAGACGATGGATCATCACTAAG 58.570 38.462 16.07 3.25 40.54 2.18
3269 4831 6.961360 TTAGACGATGGATCATCACTAAGT 57.039 37.500 14.33 4.03 40.54 2.24
3270 4832 8.350722 GTTTAGACGATGGATCATCACTAAGTA 58.649 37.037 16.07 7.58 40.54 2.24
3271 4833 6.961360 AGACGATGGATCATCACTAAGTAA 57.039 37.500 8.38 0.00 40.54 2.24
3272 4834 7.348080 AGACGATGGATCATCACTAAGTAAA 57.652 36.000 8.38 0.00 40.54 2.01
3275 4837 9.130312 GACGATGGATCATCACTAAGTAAATAC 57.870 37.037 8.38 0.00 40.54 1.89
3276 4838 8.638873 ACGATGGATCATCACTAAGTAAATACA 58.361 33.333 8.38 0.00 40.54 2.29
3277 4839 9.476202 CGATGGATCATCACTAAGTAAATACAA 57.524 33.333 8.38 0.00 40.54 2.41
3280 4842 9.599866 TGGATCATCACTAAGTAAATACAACAG 57.400 33.333 0.00 0.00 0.00 3.16
3281 4843 9.601217 GGATCATCACTAAGTAAATACAACAGT 57.399 33.333 0.00 0.00 0.00 3.55
3284 4846 9.990360 TCATCACTAAGTAAATACAACAGTTGA 57.010 29.630 20.56 4.20 0.00 3.18
3286 4848 9.998106 ATCACTAAGTAAATACAACAGTTGAGT 57.002 29.630 20.56 6.49 0.00 3.41
3287 4849 9.472361 TCACTAAGTAAATACAACAGTTGAGTC 57.528 33.333 20.56 4.37 0.00 3.36
3288 4850 9.256477 CACTAAGTAAATACAACAGTTGAGTCA 57.744 33.333 20.56 2.55 0.00 3.41
3298 4860 9.712305 ATACAACAGTTGAGTCATTATATAGGC 57.288 33.333 20.56 0.00 0.00 3.93
3299 4861 7.564793 ACAACAGTTGAGTCATTATATAGGCA 58.435 34.615 20.56 0.00 0.00 4.75
3301 4863 8.892723 CAACAGTTGAGTCATTATATAGGCAAA 58.107 33.333 7.61 0.00 0.00 3.68
3302 4864 8.668510 ACAGTTGAGTCATTATATAGGCAAAG 57.331 34.615 0.00 0.00 0.00 2.77
3304 4866 7.173907 CAGTTGAGTCATTATATAGGCAAAGGG 59.826 40.741 0.00 0.00 0.00 3.95
3305 4867 7.072454 AGTTGAGTCATTATATAGGCAAAGGGA 59.928 37.037 0.00 0.00 0.00 4.20
3306 4868 7.009179 TGAGTCATTATATAGGCAAAGGGAG 57.991 40.000 0.00 0.00 0.00 4.30
3307 4869 5.810095 AGTCATTATATAGGCAAAGGGAGC 58.190 41.667 0.00 0.00 0.00 4.70
3315 4877 2.799176 GCAAAGGGAGCCACATAGG 58.201 57.895 0.00 0.00 41.84 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 1313 8.656849 GGTCGACTCGCAAATTCATAATATTAT 58.343 33.333 16.46 1.91 0.00 1.28
44 1330 1.129998 ACTATCACAACGGTCGACTCG 59.870 52.381 16.46 18.68 0.00 4.18
243 1532 3.436704 TCGAGTCCAGCAGCAAAAATAAG 59.563 43.478 0.00 0.00 0.00 1.73
261 1580 0.105964 TCCCCGCATTAACCATCGAG 59.894 55.000 0.00 0.00 0.00 4.04
266 1585 4.956700 TGAAATTAATCCCCGCATTAACCA 59.043 37.500 0.00 0.00 32.30 3.67
299 1618 7.315890 GTTTTAGGTCCTCAGGATTGATTTTG 58.684 38.462 0.00 0.00 32.73 2.44
300 1619 6.151144 CGTTTTAGGTCCTCAGGATTGATTTT 59.849 38.462 0.00 0.00 32.73 1.82
314 1633 5.521516 GTAAGTGCTTACGTTTTAGGTCC 57.478 43.478 0.00 0.00 36.47 4.46
509 1844 7.984391 AGAAACCATTCCATTTCAACAAAAAC 58.016 30.769 0.00 0.00 37.30 2.43
522 1858 1.001393 GGCCCGAGAAACCATTCCA 60.001 57.895 0.00 0.00 36.12 3.53
545 1882 4.284178 AGCCCCAATATGATTATGGCATC 58.716 43.478 1.65 0.00 39.85 3.91
566 1903 1.412710 TCCGTGCCAGGCTTATAGAAG 59.587 52.381 14.15 0.00 35.60 2.85
571 1908 2.590092 GGTCCGTGCCAGGCTTAT 59.410 61.111 14.15 0.00 0.00 1.73
622 1966 1.414181 CTCACAATAGATCAGGGGCGT 59.586 52.381 0.00 0.00 0.00 5.68
623 1967 1.875576 GCTCACAATAGATCAGGGGCG 60.876 57.143 0.00 0.00 0.00 6.13
750 2100 3.368116 GCGTATTTGTAGGTGTGGAGAGT 60.368 47.826 0.00 0.00 0.00 3.24
781 2131 1.293498 GTGTGAGCGTCCAGTCCAT 59.707 57.895 0.00 0.00 0.00 3.41
874 2243 4.678743 GGCGGGTTCCTTGCCCTT 62.679 66.667 12.29 0.00 43.92 3.95
1064 2466 2.156051 GACGTTCTCCGCTTCCTGGT 62.156 60.000 0.00 0.00 41.42 4.00
1081 2483 0.593618 TGGATGAGATAGAGCGCGAC 59.406 55.000 12.10 2.22 0.00 5.19
1119 2521 2.584608 CCCGCCTCGATGGTTTCT 59.415 61.111 0.00 0.00 38.35 2.52
1270 2672 4.070552 GAAGGAGGAGTGCGGCGT 62.071 66.667 9.37 0.00 0.00 5.68
1329 2731 1.376609 GCCCCGCATTGTAGAACTGG 61.377 60.000 0.00 0.00 0.00 4.00
1339 2741 3.489513 GAGGTAGGGCCCCGCATT 61.490 66.667 21.43 0.62 38.26 3.56
1614 3016 2.523168 TGGTCCAGGCTGTCGTCA 60.523 61.111 14.43 3.50 0.00 4.35
1637 3039 2.438434 CCTGGAACATCCACGGCC 60.438 66.667 0.00 0.00 42.67 6.13
1744 3146 1.037579 AGCACGATGTCGATGGGAGA 61.038 55.000 9.67 0.00 43.02 3.71
1756 3158 2.419198 GATCCAGCCGAGCACGAT 59.581 61.111 4.70 0.00 42.66 3.73
2064 3466 3.625897 CTCGGACCCAGTGGCACA 61.626 66.667 21.41 0.00 33.59 4.57
2417 3844 0.788995 ACGACTGACTCACGACTACG 59.211 55.000 0.00 0.00 45.75 3.51
2418 3845 1.797046 TGACGACTGACTCACGACTAC 59.203 52.381 0.00 0.00 0.00 2.73
2419 3846 2.159327 TGACGACTGACTCACGACTA 57.841 50.000 0.00 0.00 0.00 2.59
2420 3847 1.524848 ATGACGACTGACTCACGACT 58.475 50.000 0.00 0.00 0.00 4.18
2448 3897 6.428083 TTGACACTTTATTGACCTAGACCA 57.572 37.500 0.00 0.00 0.00 4.02
2470 3919 4.021894 ACGACACTATCTCTCACAAGCTTT 60.022 41.667 0.00 0.00 0.00 3.51
2474 3928 6.693545 GGAATAACGACACTATCTCTCACAAG 59.306 42.308 0.00 0.00 0.00 3.16
2512 3969 9.490663 GATGAAACAAATTAACTGTTCGATAGG 57.509 33.333 0.00 0.00 35.98 2.57
2573 4036 1.687628 GACTACATACGGATCAGCGC 58.312 55.000 0.00 0.00 0.00 5.92
2575 4038 3.351020 AACGACTACATACGGATCAGC 57.649 47.619 0.00 0.00 0.00 4.26
2576 4039 5.235831 TGAGTAACGACTACATACGGATCAG 59.764 44.000 0.00 0.00 35.45 2.90
2577 4040 5.007039 GTGAGTAACGACTACATACGGATCA 59.993 44.000 0.00 0.00 35.45 2.92
2578 4041 5.236047 AGTGAGTAACGACTACATACGGATC 59.764 44.000 0.00 0.00 35.45 3.36
2579 4042 5.121811 AGTGAGTAACGACTACATACGGAT 58.878 41.667 0.00 0.00 35.45 4.18
2580 4043 4.507710 AGTGAGTAACGACTACATACGGA 58.492 43.478 0.00 0.00 35.45 4.69
2581 4044 4.260538 GGAGTGAGTAACGACTACATACGG 60.261 50.000 0.00 0.00 35.45 4.02
2582 4045 4.549680 CGGAGTGAGTAACGACTACATACG 60.550 50.000 0.00 0.00 35.45 3.06
2584 4047 4.758688 TCGGAGTGAGTAACGACTACATA 58.241 43.478 0.00 0.00 35.45 2.29
2585 4048 3.603532 TCGGAGTGAGTAACGACTACAT 58.396 45.455 0.00 0.00 35.45 2.29
2586 4049 3.044235 TCGGAGTGAGTAACGACTACA 57.956 47.619 0.00 0.00 35.45 2.74
2592 4055 0.096628 CTCCGTCGGAGTGAGTAACG 59.903 60.000 29.66 5.10 44.25 3.18
2593 4056 3.992636 CTCCGTCGGAGTGAGTAAC 57.007 57.895 29.66 0.00 44.25 2.50
2608 4071 4.475135 GAACGCTCCCTGGCCTCC 62.475 72.222 3.32 0.00 0.00 4.30
2609 4072 4.821589 CGAACGCTCCCTGGCCTC 62.822 72.222 3.32 0.00 0.00 4.70
2611 4074 2.306255 TAATCGAACGCTCCCTGGCC 62.306 60.000 0.00 0.00 0.00 5.36
2612 4075 1.143183 TAATCGAACGCTCCCTGGC 59.857 57.895 0.00 0.00 0.00 4.85
2614 4077 1.560923 CAGTAATCGAACGCTCCCTG 58.439 55.000 0.00 0.00 0.00 4.45
2615 4078 0.460311 CCAGTAATCGAACGCTCCCT 59.540 55.000 0.00 0.00 0.00 4.20
2617 4080 2.034812 AGATCCAGTAATCGAACGCTCC 59.965 50.000 0.00 0.00 0.00 4.70
2618 4081 3.046390 CAGATCCAGTAATCGAACGCTC 58.954 50.000 0.00 0.00 0.00 5.03
2619 4082 2.427453 ACAGATCCAGTAATCGAACGCT 59.573 45.455 0.00 0.00 0.00 5.07
2621 4084 3.372954 GGACAGATCCAGTAATCGAACG 58.627 50.000 0.00 0.00 45.47 3.95
2633 4096 2.158842 CCATCTTCCACTGGACAGATCC 60.159 54.545 14.87 0.00 46.48 3.36
2637 4100 2.419297 GCTACCATCTTCCACTGGACAG 60.419 54.545 0.00 0.00 36.35 3.51
2639 4102 1.471676 CGCTACCATCTTCCACTGGAC 60.472 57.143 0.00 0.00 36.35 4.02
2643 4106 1.141881 CGCGCTACCATCTTCCACT 59.858 57.895 5.56 0.00 0.00 4.00
2644 4107 1.883084 CCGCGCTACCATCTTCCAC 60.883 63.158 5.56 0.00 0.00 4.02
2646 4109 2.100879 ATCCCGCGCTACCATCTTCC 62.101 60.000 5.56 0.00 0.00 3.46
2648 4111 1.267121 ATATCCCGCGCTACCATCTT 58.733 50.000 5.56 0.00 0.00 2.40
2649 4112 1.267121 AATATCCCGCGCTACCATCT 58.733 50.000 5.56 0.00 0.00 2.90
2650 4113 2.094762 AAATATCCCGCGCTACCATC 57.905 50.000 5.56 0.00 0.00 3.51
2652 4115 2.335316 AAAAATATCCCGCGCTACCA 57.665 45.000 5.56 0.00 0.00 3.25
2653 4116 3.058708 GGTTAAAAATATCCCGCGCTACC 60.059 47.826 5.56 0.00 0.00 3.18
2654 4117 3.363280 CGGTTAAAAATATCCCGCGCTAC 60.363 47.826 5.56 0.00 0.00 3.58
2655 4118 2.801679 CGGTTAAAAATATCCCGCGCTA 59.198 45.455 5.56 0.00 0.00 4.26
2657 4120 1.334329 CCGGTTAAAAATATCCCGCGC 60.334 52.381 0.00 0.00 37.37 6.86
2659 4122 4.374843 AAACCGGTTAAAAATATCCCGC 57.625 40.909 22.60 0.00 37.37 6.13
2660 4123 6.434018 TGTAAACCGGTTAAAAATATCCCG 57.566 37.500 22.60 0.00 38.39 5.14
2661 4124 8.077991 GCTATGTAAACCGGTTAAAAATATCCC 58.922 37.037 22.60 5.23 0.00 3.85
2663 4126 7.799914 CCGCTATGTAAACCGGTTAAAAATATC 59.200 37.037 22.60 11.10 36.18 1.63
2664 4127 7.641760 CCGCTATGTAAACCGGTTAAAAATAT 58.358 34.615 22.60 12.35 36.18 1.28
2665 4128 7.014092 CCGCTATGTAAACCGGTTAAAAATA 57.986 36.000 22.60 15.03 36.18 1.40
2666 4129 5.882553 CCGCTATGTAAACCGGTTAAAAAT 58.117 37.500 22.60 14.69 36.18 1.82
2668 4131 4.943142 CCGCTATGTAAACCGGTTAAAA 57.057 40.909 22.60 9.31 36.18 1.52
2674 4137 1.864711 CATGACCGCTATGTAAACCGG 59.135 52.381 0.00 0.00 45.80 5.28
2680 4143 7.284716 CCTATCCTATTACATGACCGCTATGTA 59.715 40.741 0.00 0.00 39.36 2.29
2681 4144 6.096987 CCTATCCTATTACATGACCGCTATGT 59.903 42.308 0.00 0.00 41.36 2.29
2682 4145 6.507900 CCTATCCTATTACATGACCGCTATG 58.492 44.000 0.00 0.00 0.00 2.23
2683 4146 5.069251 GCCTATCCTATTACATGACCGCTAT 59.931 44.000 0.00 0.00 0.00 2.97
2684 4147 4.401519 GCCTATCCTATTACATGACCGCTA 59.598 45.833 0.00 0.00 0.00 4.26
2685 4148 3.195825 GCCTATCCTATTACATGACCGCT 59.804 47.826 0.00 0.00 0.00 5.52
2686 4149 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
2687 4150 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
2688 4151 8.322091 ACTAATTGCCTATCCTATTACATGACC 58.678 37.037 0.00 0.00 0.00 4.02
2689 4152 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
2705 4168 9.923143 AAAACAAAGATAGGTAAACTAATTGCC 57.077 29.630 0.00 0.00 43.60 4.52
2711 4174 8.943002 GCTAGCAAAACAAAGATAGGTAAACTA 58.057 33.333 10.63 0.00 35.80 2.24
2712 4175 7.094334 GGCTAGCAAAACAAAGATAGGTAAACT 60.094 37.037 18.24 0.00 0.00 2.66
2713 4176 7.027760 GGCTAGCAAAACAAAGATAGGTAAAC 58.972 38.462 18.24 0.00 0.00 2.01
2714 4177 6.128117 CGGCTAGCAAAACAAAGATAGGTAAA 60.128 38.462 18.24 0.00 0.00 2.01
2715 4178 5.353123 CGGCTAGCAAAACAAAGATAGGTAA 59.647 40.000 18.24 0.00 0.00 2.85
2716 4179 4.873827 CGGCTAGCAAAACAAAGATAGGTA 59.126 41.667 18.24 0.00 0.00 3.08
2717 4180 3.689649 CGGCTAGCAAAACAAAGATAGGT 59.310 43.478 18.24 0.00 0.00 3.08
2718 4181 3.689649 ACGGCTAGCAAAACAAAGATAGG 59.310 43.478 18.24 0.00 0.00 2.57
2719 4182 4.946784 ACGGCTAGCAAAACAAAGATAG 57.053 40.909 18.24 0.00 0.00 2.08
2720 4183 5.009210 ACAAACGGCTAGCAAAACAAAGATA 59.991 36.000 18.24 0.00 0.00 1.98
2721 4184 4.202111 ACAAACGGCTAGCAAAACAAAGAT 60.202 37.500 18.24 0.00 0.00 2.40
2722 4185 3.129638 ACAAACGGCTAGCAAAACAAAGA 59.870 39.130 18.24 0.00 0.00 2.52
2723 4186 3.242712 CACAAACGGCTAGCAAAACAAAG 59.757 43.478 18.24 0.73 0.00 2.77
2724 4187 3.182967 CACAAACGGCTAGCAAAACAAA 58.817 40.909 18.24 0.00 0.00 2.83
2725 4188 2.480416 CCACAAACGGCTAGCAAAACAA 60.480 45.455 18.24 0.00 0.00 2.83
2726 4189 1.066303 CCACAAACGGCTAGCAAAACA 59.934 47.619 18.24 0.00 0.00 2.83
2727 4190 1.766069 CCACAAACGGCTAGCAAAAC 58.234 50.000 18.24 0.00 0.00 2.43
2750 4213 1.756430 GCCAAAAACAAAAGGGCCAA 58.244 45.000 6.18 0.00 38.70 4.52
2752 4215 0.462937 ACGCCAAAAACAAAAGGGCC 60.463 50.000 0.00 0.00 41.58 5.80
2753 4216 1.063321 CAACGCCAAAAACAAAAGGGC 59.937 47.619 0.00 0.00 41.20 5.19
2754 4217 2.095053 CACAACGCCAAAAACAAAAGGG 59.905 45.455 0.00 0.00 0.00 3.95
2756 4219 3.677596 AGTCACAACGCCAAAAACAAAAG 59.322 39.130 0.00 0.00 0.00 2.27
2757 4220 3.654414 AGTCACAACGCCAAAAACAAAA 58.346 36.364 0.00 0.00 0.00 2.44
2758 4221 3.057174 AGAGTCACAACGCCAAAAACAAA 60.057 39.130 0.00 0.00 0.00 2.83
2759 4222 2.490115 AGAGTCACAACGCCAAAAACAA 59.510 40.909 0.00 0.00 0.00 2.83
2760 4223 2.088423 AGAGTCACAACGCCAAAAACA 58.912 42.857 0.00 0.00 0.00 2.83
2761 4224 2.844122 AGAGTCACAACGCCAAAAAC 57.156 45.000 0.00 0.00 0.00 2.43
2762 4225 3.057174 ACAAAGAGTCACAACGCCAAAAA 60.057 39.130 0.00 0.00 0.00 1.94
2763 4226 2.490115 ACAAAGAGTCACAACGCCAAAA 59.510 40.909 0.00 0.00 0.00 2.44
2764 4227 2.088423 ACAAAGAGTCACAACGCCAAA 58.912 42.857 0.00 0.00 0.00 3.28
2766 4229 1.013596 CACAAAGAGTCACAACGCCA 58.986 50.000 0.00 0.00 0.00 5.69
2767 4230 1.261619 CTCACAAAGAGTCACAACGCC 59.738 52.381 0.00 0.00 39.62 5.68
2768 4231 1.333258 GCTCACAAAGAGTCACAACGC 60.333 52.381 0.00 0.00 46.47 4.84
2769 4232 2.205074 AGCTCACAAAGAGTCACAACG 58.795 47.619 0.00 0.00 46.47 4.10
2771 4234 3.609853 ACAAGCTCACAAAGAGTCACAA 58.390 40.909 0.00 0.00 46.47 3.33
2772 4235 3.198068 GACAAGCTCACAAAGAGTCACA 58.802 45.455 0.00 0.00 46.47 3.58
2773 4236 2.219674 CGACAAGCTCACAAAGAGTCAC 59.780 50.000 0.00 0.00 46.47 3.67
2774 4237 2.159099 ACGACAAGCTCACAAAGAGTCA 60.159 45.455 0.00 0.00 46.47 3.41
2775 4238 2.474816 ACGACAAGCTCACAAAGAGTC 58.525 47.619 0.00 0.00 46.47 3.36
2776 4239 2.604046 ACGACAAGCTCACAAAGAGT 57.396 45.000 0.00 0.00 46.47 3.24
2778 4241 4.883083 AGATAACGACAAGCTCACAAAGA 58.117 39.130 0.00 0.00 0.00 2.52
2779 4242 5.050091 ACAAGATAACGACAAGCTCACAAAG 60.050 40.000 0.00 0.00 0.00 2.77
2780 4243 4.814234 ACAAGATAACGACAAGCTCACAAA 59.186 37.500 0.00 0.00 0.00 2.83
2781 4244 4.377021 ACAAGATAACGACAAGCTCACAA 58.623 39.130 0.00 0.00 0.00 3.33
2782 4245 3.990092 ACAAGATAACGACAAGCTCACA 58.010 40.909 0.00 0.00 0.00 3.58
2784 4247 5.525745 TGAAAACAAGATAACGACAAGCTCA 59.474 36.000 0.00 0.00 0.00 4.26
2786 4249 5.758296 TCTGAAAACAAGATAACGACAAGCT 59.242 36.000 0.00 0.00 0.00 3.74
2787 4250 5.846473 GTCTGAAAACAAGATAACGACAAGC 59.154 40.000 0.00 0.00 0.00 4.01
2788 4251 7.178712 AGTCTGAAAACAAGATAACGACAAG 57.821 36.000 0.00 0.00 0.00 3.16
2789 4252 7.548196 AAGTCTGAAAACAAGATAACGACAA 57.452 32.000 0.00 0.00 0.00 3.18
2790 4253 7.548196 AAAGTCTGAAAACAAGATAACGACA 57.452 32.000 0.00 0.00 0.00 4.35
2791 4254 9.925268 TTTAAAGTCTGAAAACAAGATAACGAC 57.075 29.630 0.00 0.00 0.00 4.34
2798 4261 8.581578 ACAAGGTTTTAAAGTCTGAAAACAAGA 58.418 29.630 18.29 0.00 43.99 3.02
2799 4262 8.757164 ACAAGGTTTTAAAGTCTGAAAACAAG 57.243 30.769 18.29 12.33 43.99 3.16
2800 4263 8.983724 CAACAAGGTTTTAAAGTCTGAAAACAA 58.016 29.630 18.29 0.00 43.99 2.83
2801 4264 8.361139 TCAACAAGGTTTTAAAGTCTGAAAACA 58.639 29.630 18.29 1.88 43.99 2.83
2803 4266 9.198837 GTTCAACAAGGTTTTAAAGTCTGAAAA 57.801 29.630 0.00 0.00 0.00 2.29
2806 4269 7.309920 GTGTTCAACAAGGTTTTAAAGTCTGA 58.690 34.615 0.00 0.00 0.00 3.27
2807 4270 6.530181 GGTGTTCAACAAGGTTTTAAAGTCTG 59.470 38.462 0.00 0.00 0.00 3.51
2809 4272 6.627243 AGGTGTTCAACAAGGTTTTAAAGTC 58.373 36.000 0.00 0.00 0.00 3.01
2812 4275 9.945904 AATAAAGGTGTTCAACAAGGTTTTAAA 57.054 25.926 0.00 0.00 0.00 1.52
2813 4276 9.945904 AAATAAAGGTGTTCAACAAGGTTTTAA 57.054 25.926 0.00 0.00 0.00 1.52
2830 4293 9.974980 CGGCCACATTTATAAATAAATAAAGGT 57.025 29.630 10.34 0.00 43.39 3.50
2831 4294 9.974980 ACGGCCACATTTATAAATAAATAAAGG 57.025 29.630 10.34 9.98 40.07 3.11
2836 4299 8.580720 TGCATACGGCCACATTTATAAATAAAT 58.419 29.630 10.34 2.73 41.37 1.40
2837 4300 7.941919 TGCATACGGCCACATTTATAAATAAA 58.058 30.769 10.34 0.00 43.89 1.40
2838 4301 7.511959 TGCATACGGCCACATTTATAAATAA 57.488 32.000 10.34 0.00 43.89 1.40
2839 4302 7.413548 CGATGCATACGGCCACATTTATAAATA 60.414 37.037 10.34 0.00 43.89 1.40
2840 4303 6.588719 ATGCATACGGCCACATTTATAAAT 57.411 33.333 2.24 4.81 43.89 1.40
2841 4304 5.334491 CGATGCATACGGCCACATTTATAAA 60.334 40.000 2.24 0.00 43.89 1.40
2842 4305 4.153296 CGATGCATACGGCCACATTTATAA 59.847 41.667 2.24 0.00 43.89 0.98
2843 4306 3.682377 CGATGCATACGGCCACATTTATA 59.318 43.478 2.24 0.00 43.89 0.98
2844 4307 2.483877 CGATGCATACGGCCACATTTAT 59.516 45.455 2.24 0.00 43.89 1.40
2845 4308 1.870402 CGATGCATACGGCCACATTTA 59.130 47.619 2.24 0.00 43.89 1.40
2846 4309 0.662619 CGATGCATACGGCCACATTT 59.337 50.000 2.24 0.00 43.89 2.32
2847 4310 0.463654 ACGATGCATACGGCCACATT 60.464 50.000 18.34 0.00 43.89 2.71
2848 4311 0.391228 TACGATGCATACGGCCACAT 59.609 50.000 18.34 0.00 43.89 3.21
2849 4312 0.391228 ATACGATGCATACGGCCACA 59.609 50.000 18.34 0.00 43.89 4.17
2850 4313 0.790207 CATACGATGCATACGGCCAC 59.210 55.000 18.34 0.00 43.89 5.01
2851 4314 3.209266 CATACGATGCATACGGCCA 57.791 52.632 18.34 7.46 43.89 5.36
2875 4338 4.161295 CCCGCCTCTGCATCGGAA 62.161 66.667 15.42 0.00 45.53 4.30
2878 4341 4.598894 CTCCCCGCCTCTGCATCG 62.599 72.222 0.00 0.00 37.32 3.84
2879 4342 3.453070 GACTCCCCGCCTCTGCATC 62.453 68.421 0.00 0.00 37.32 3.91
2880 4343 3.474570 GACTCCCCGCCTCTGCAT 61.475 66.667 0.00 0.00 37.32 3.96
2881 4344 4.704103 AGACTCCCCGCCTCTGCA 62.704 66.667 0.00 0.00 37.32 4.41
2882 4345 3.844090 GAGACTCCCCGCCTCTGC 61.844 72.222 0.00 0.00 0.00 4.26
2963 4426 3.552478 GCCGCACTTCCTACCTAGTAATC 60.552 52.174 0.00 0.00 0.00 1.75
2968 4431 0.824759 AAGCCGCACTTCCTACCTAG 59.175 55.000 0.00 0.00 30.77 3.02
2969 4432 0.535335 CAAGCCGCACTTCCTACCTA 59.465 55.000 0.00 0.00 36.04 3.08
2970 4433 1.296715 CAAGCCGCACTTCCTACCT 59.703 57.895 0.00 0.00 36.04 3.08
2971 4434 2.399356 GCAAGCCGCACTTCCTACC 61.399 63.158 0.00 0.00 41.79 3.18
2972 4435 2.399356 GGCAAGCCGCACTTCCTAC 61.399 63.158 0.00 0.00 45.17 3.18
2973 4436 2.046314 GGCAAGCCGCACTTCCTA 60.046 61.111 0.00 0.00 45.17 2.94
2992 4455 4.063967 TACTCGCAGCACCGGGTG 62.064 66.667 22.87 22.87 42.76 4.61
2993 4456 4.065281 GTACTCGCAGCACCGGGT 62.065 66.667 6.32 6.76 45.22 5.28
2995 4458 2.507102 CTGTACTCGCAGCACCGG 60.507 66.667 0.00 0.00 0.00 5.28
2998 4461 2.561733 TATGACTGTACTCGCAGCAC 57.438 50.000 0.00 0.00 39.96 4.40
2999 4462 2.034685 GGATATGACTGTACTCGCAGCA 59.965 50.000 0.00 0.00 39.96 4.41
3000 4463 2.034685 TGGATATGACTGTACTCGCAGC 59.965 50.000 0.00 0.00 39.96 5.25
3002 4465 4.262036 GGATTGGATATGACTGTACTCGCA 60.262 45.833 0.00 0.00 0.00 5.10
3003 4466 4.238514 GGATTGGATATGACTGTACTCGC 58.761 47.826 0.00 0.00 0.00 5.03
3005 4468 4.021894 AGCGGATTGGATATGACTGTACTC 60.022 45.833 0.00 0.00 0.00 2.59
3006 4469 3.898123 AGCGGATTGGATATGACTGTACT 59.102 43.478 0.00 0.00 0.00 2.73
3007 4470 4.258702 AGCGGATTGGATATGACTGTAC 57.741 45.455 0.00 0.00 0.00 2.90
3008 4471 7.898014 ATATAGCGGATTGGATATGACTGTA 57.102 36.000 0.00 0.00 0.00 2.74
3010 4473 7.946207 ACTATATAGCGGATTGGATATGACTG 58.054 38.462 9.78 0.00 0.00 3.51
3011 4474 7.780271 TGACTATATAGCGGATTGGATATGACT 59.220 37.037 9.78 0.00 0.00 3.41
3013 4476 8.712228 ATGACTATATAGCGGATTGGATATGA 57.288 34.615 9.78 0.00 0.00 2.15
3016 4479 9.807921 TCATATGACTATATAGCGGATTGGATA 57.192 33.333 9.78 0.00 0.00 2.59
3017 4480 8.712228 TCATATGACTATATAGCGGATTGGAT 57.288 34.615 9.78 0.00 0.00 3.41
3018 4481 7.255625 GCTCATATGACTATATAGCGGATTGGA 60.256 40.741 9.78 0.07 0.00 3.53
3019 4482 6.865726 GCTCATATGACTATATAGCGGATTGG 59.134 42.308 9.78 0.00 0.00 3.16
3020 4483 7.428826 TGCTCATATGACTATATAGCGGATTG 58.571 38.462 9.78 3.47 33.43 2.67
3021 4484 7.588497 TGCTCATATGACTATATAGCGGATT 57.412 36.000 9.78 0.00 33.43 3.01
3022 4485 7.773489 ATGCTCATATGACTATATAGCGGAT 57.227 36.000 9.78 2.41 33.43 4.18
3023 4486 7.428826 CAATGCTCATATGACTATATAGCGGA 58.571 38.462 9.78 0.00 33.43 5.54
3024 4487 6.145209 GCAATGCTCATATGACTATATAGCGG 59.855 42.308 9.78 0.00 33.43 5.52
3031 4494 9.457436 TCATATTTGCAATGCTCATATGACTAT 57.543 29.630 23.69 0.00 36.60 2.12
3033 4496 7.754851 TCATATTTGCAATGCTCATATGACT 57.245 32.000 23.69 1.25 36.60 3.41
3035 4498 9.819267 TTTTTCATATTTGCAATGCTCATATGA 57.181 25.926 23.69 23.69 38.07 2.15
3039 4502 8.770828 GCTATTTTTCATATTTGCAATGCTCAT 58.229 29.630 6.82 0.70 0.00 2.90
3042 4505 8.495361 TTGCTATTTTTCATATTTGCAATGCT 57.505 26.923 6.82 0.00 34.82 3.79
3062 4525 8.955388 TGCTTGAACAATAACTATTCATTGCTA 58.045 29.630 0.00 0.00 35.91 3.49
3063 4526 7.829725 TGCTTGAACAATAACTATTCATTGCT 58.170 30.769 0.00 0.00 35.91 3.91
3065 4528 9.577110 ACATGCTTGAACAATAACTATTCATTG 57.423 29.630 6.60 0.00 37.99 2.82
3073 4536 9.248291 CTTTGTTTACATGCTTGAACAATAACT 57.752 29.630 15.72 0.00 40.44 2.24
3074 4537 9.030301 ACTTTGTTTACATGCTTGAACAATAAC 57.970 29.630 15.72 7.71 40.44 1.89
3086 4549 9.739786 GCAACAATTAATACTTTGTTTACATGC 57.260 29.630 2.83 1.39 41.90 4.06
3087 4550 9.936108 CGCAACAATTAATACTTTGTTTACATG 57.064 29.630 2.83 0.00 41.90 3.21
3099 4593 9.726034 CACATTTTCTTTCGCAACAATTAATAC 57.274 29.630 0.00 0.00 0.00 1.89
3103 4597 6.276847 ACCACATTTTCTTTCGCAACAATTA 58.723 32.000 0.00 0.00 0.00 1.40
3108 4602 3.302415 GCAACCACATTTTCTTTCGCAAC 60.302 43.478 0.00 0.00 0.00 4.17
3111 4605 1.792367 GGCAACCACATTTTCTTTCGC 59.208 47.619 0.00 0.00 0.00 4.70
3112 4606 2.050691 CGGCAACCACATTTTCTTTCG 58.949 47.619 0.00 0.00 0.00 3.46
3113 4607 3.049912 GTCGGCAACCACATTTTCTTTC 58.950 45.455 0.00 0.00 0.00 2.62
3116 4610 1.686355 TGTCGGCAACCACATTTTCT 58.314 45.000 0.00 0.00 0.00 2.52
3117 4611 2.500509 TTGTCGGCAACCACATTTTC 57.499 45.000 0.00 0.00 0.00 2.29
3118 4612 2.547642 CCATTGTCGGCAACCACATTTT 60.548 45.455 3.66 0.00 37.44 1.82
3119 4613 1.000731 CCATTGTCGGCAACCACATTT 59.999 47.619 3.66 0.00 37.44 2.32
3120 4614 0.602562 CCATTGTCGGCAACCACATT 59.397 50.000 3.66 0.00 37.44 2.71
3122 4616 0.251121 ATCCATTGTCGGCAACCACA 60.251 50.000 3.66 0.00 37.44 4.17
3123 4617 0.451783 GATCCATTGTCGGCAACCAC 59.548 55.000 3.66 0.00 37.44 4.16
3125 4619 0.734889 CTGATCCATTGTCGGCAACC 59.265 55.000 3.66 0.00 37.44 3.77
3126 4620 1.398390 GACTGATCCATTGTCGGCAAC 59.602 52.381 3.66 0.00 37.44 4.17
3127 4621 1.678728 GGACTGATCCATTGTCGGCAA 60.679 52.381 4.23 4.23 45.47 4.52
3129 4623 2.695314 GGACTGATCCATTGTCGGC 58.305 57.895 0.00 0.00 45.47 5.54
3139 4633 3.795623 ATTTGCTGCATTGGACTGATC 57.204 42.857 1.84 0.00 0.00 2.92
3140 4634 4.546829 AAATTTGCTGCATTGGACTGAT 57.453 36.364 1.84 0.00 0.00 2.90
3141 4635 4.280425 TGTAAATTTGCTGCATTGGACTGA 59.720 37.500 1.84 0.00 0.00 3.41
3142 4636 4.558178 TGTAAATTTGCTGCATTGGACTG 58.442 39.130 1.84 0.00 0.00 3.51
3143 4637 4.523943 TCTGTAAATTTGCTGCATTGGACT 59.476 37.500 1.84 0.00 0.00 3.85
3144 4638 4.808558 TCTGTAAATTTGCTGCATTGGAC 58.191 39.130 1.84 0.00 0.00 4.02
3146 4640 3.615496 GCTCTGTAAATTTGCTGCATTGG 59.385 43.478 1.84 0.00 0.00 3.16
3147 4641 4.239304 TGCTCTGTAAATTTGCTGCATTG 58.761 39.130 1.84 1.02 0.00 2.82
3148 4642 4.524316 TGCTCTGTAAATTTGCTGCATT 57.476 36.364 1.84 0.00 0.00 3.56
3149 4643 4.730949 ATGCTCTGTAAATTTGCTGCAT 57.269 36.364 19.75 19.75 35.44 3.96
3151 4645 4.925054 TGAAATGCTCTGTAAATTTGCTGC 59.075 37.500 7.80 9.43 0.00 5.25
3152 4646 6.255020 GGATGAAATGCTCTGTAAATTTGCTG 59.745 38.462 7.80 7.27 0.00 4.41
3154 4648 6.101332 TGGATGAAATGCTCTGTAAATTTGC 58.899 36.000 0.00 0.00 34.76 3.68
3155 4649 7.201496 GCTTGGATGAAATGCTCTGTAAATTTG 60.201 37.037 0.00 0.00 34.76 2.32
3156 4650 6.815142 GCTTGGATGAAATGCTCTGTAAATTT 59.185 34.615 0.00 0.00 34.76 1.82
3158 4652 5.419788 TGCTTGGATGAAATGCTCTGTAAAT 59.580 36.000 0.00 0.00 34.76 1.40
3159 4653 4.766373 TGCTTGGATGAAATGCTCTGTAAA 59.234 37.500 0.00 0.00 34.76 2.01
3162 4656 2.799017 TGCTTGGATGAAATGCTCTGT 58.201 42.857 0.00 0.00 34.76 3.41
3164 4658 3.368116 GCTTTGCTTGGATGAAATGCTCT 60.368 43.478 0.00 0.00 34.76 4.09
3165 4659 2.928116 GCTTTGCTTGGATGAAATGCTC 59.072 45.455 0.00 0.00 34.76 4.26
3167 4661 2.004733 GGCTTTGCTTGGATGAAATGC 58.995 47.619 0.00 0.00 33.97 3.56
3169 4663 4.320870 CTTTGGCTTTGCTTGGATGAAAT 58.679 39.130 0.00 0.00 0.00 2.17
3170 4664 3.494749 CCTTTGGCTTTGCTTGGATGAAA 60.495 43.478 0.00 0.00 0.00 2.69
3171 4665 2.037511 CCTTTGGCTTTGCTTGGATGAA 59.962 45.455 0.00 0.00 0.00 2.57
3175 4669 1.747774 GCCTTTGGCTTTGCTTGGA 59.252 52.632 0.73 0.00 46.69 3.53
3176 4670 4.366603 GCCTTTGGCTTTGCTTGG 57.633 55.556 0.73 0.00 46.69 3.61
3187 4681 5.561532 CGGTATATCTGATTGCTTGCCTTTG 60.562 44.000 0.00 0.00 0.00 2.77
3188 4682 4.516698 CGGTATATCTGATTGCTTGCCTTT 59.483 41.667 0.00 0.00 0.00 3.11
3190 4684 3.324846 TCGGTATATCTGATTGCTTGCCT 59.675 43.478 0.00 0.00 0.00 4.75
3191 4685 3.664107 TCGGTATATCTGATTGCTTGCC 58.336 45.455 0.00 0.00 0.00 4.52
3192 4686 5.673337 TTTCGGTATATCTGATTGCTTGC 57.327 39.130 0.00 0.00 0.00 4.01
3196 4690 5.673337 TTGCTTTCGGTATATCTGATTGC 57.327 39.130 0.00 0.00 33.69 3.56
3197 4691 6.483307 TCCTTTGCTTTCGGTATATCTGATTG 59.517 38.462 0.00 0.00 0.00 2.67
3198 4692 6.591935 TCCTTTGCTTTCGGTATATCTGATT 58.408 36.000 0.00 0.00 0.00 2.57
3202 4696 4.141711 TGCTCCTTTGCTTTCGGTATATCT 60.142 41.667 0.00 0.00 0.00 1.98
3203 4697 4.127171 TGCTCCTTTGCTTTCGGTATATC 58.873 43.478 0.00 0.00 0.00 1.63
3205 4699 3.620427 TGCTCCTTTGCTTTCGGTATA 57.380 42.857 0.00 0.00 0.00 1.47
3206 4700 2.489938 TGCTCCTTTGCTTTCGGTAT 57.510 45.000 0.00 0.00 0.00 2.73
3208 4702 1.620822 AATGCTCCTTTGCTTTCGGT 58.379 45.000 0.00 0.00 0.00 4.69
3212 4706 6.581712 TGTAAGAAAAATGCTCCTTTGCTTT 58.418 32.000 4.85 0.00 32.78 3.51
3213 4707 6.160576 TGTAAGAAAAATGCTCCTTTGCTT 57.839 33.333 4.90 4.90 0.00 3.91
3214 4708 5.789643 TGTAAGAAAAATGCTCCTTTGCT 57.210 34.783 0.00 0.00 0.00 3.91
3239 4801 8.424918 AGTGATGATCCATCGTCTAAACTTATT 58.575 33.333 9.65 0.00 43.14 1.40
3240 4802 7.957002 AGTGATGATCCATCGTCTAAACTTAT 58.043 34.615 9.65 0.00 43.14 1.73
3247 4809 8.459911 TTTACTTAGTGATGATCCATCGTCTA 57.540 34.615 9.65 0.00 43.14 2.59
3249 4811 9.130312 GTATTTACTTAGTGATGATCCATCGTC 57.870 37.037 0.00 2.26 43.14 4.20
3251 4813 9.476202 TTGTATTTACTTAGTGATGATCCATCG 57.524 33.333 0.00 0.00 43.14 3.84
3254 4816 9.599866 CTGTTGTATTTACTTAGTGATGATCCA 57.400 33.333 0.00 0.00 0.00 3.41
3255 4817 9.601217 ACTGTTGTATTTACTTAGTGATGATCC 57.399 33.333 0.00 0.00 0.00 3.36
3261 4823 9.472361 GACTCAACTGTTGTATTTACTTAGTGA 57.528 33.333 19.12 0.00 0.00 3.41
3263 4825 9.998106 ATGACTCAACTGTTGTATTTACTTAGT 57.002 29.630 19.12 11.88 0.00 2.24
3272 4834 9.712305 GCCTATATAATGACTCAACTGTTGTAT 57.288 33.333 19.12 11.17 0.00 2.29
3275 4837 8.437360 TTGCCTATATAATGACTCAACTGTTG 57.563 34.615 14.24 14.24 0.00 3.33
3276 4838 9.113838 CTTTGCCTATATAATGACTCAACTGTT 57.886 33.333 0.00 0.00 0.00 3.16
3277 4839 7.716998 CCTTTGCCTATATAATGACTCAACTGT 59.283 37.037 0.00 0.00 0.00 3.55
3278 4840 7.173907 CCCTTTGCCTATATAATGACTCAACTG 59.826 40.741 0.00 0.00 0.00 3.16
3279 4841 7.072454 TCCCTTTGCCTATATAATGACTCAACT 59.928 37.037 0.00 0.00 0.00 3.16
3280 4842 7.224297 TCCCTTTGCCTATATAATGACTCAAC 58.776 38.462 0.00 0.00 0.00 3.18
3281 4843 7.387265 TCCCTTTGCCTATATAATGACTCAA 57.613 36.000 0.00 0.00 0.00 3.02
3282 4844 6.520742 GCTCCCTTTGCCTATATAATGACTCA 60.521 42.308 0.00 0.00 0.00 3.41
3283 4845 5.877564 GCTCCCTTTGCCTATATAATGACTC 59.122 44.000 0.00 0.00 0.00 3.36
3284 4846 5.280727 GGCTCCCTTTGCCTATATAATGACT 60.281 44.000 0.00 0.00 46.38 3.41
3286 4848 5.179452 GGCTCCCTTTGCCTATATAATGA 57.821 43.478 0.00 0.00 46.38 2.57
3297 4859 2.799176 CCTATGTGGCTCCCTTTGC 58.201 57.895 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.