Multiple sequence alignment - TraesCS4B01G342200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G342200 chr4B 100.000 2276 0 0 1 2276 635324312 635322037 0.000000e+00 4204
1 TraesCS4B01G342200 chr2B 96.475 1305 45 1 1 1304 417497898 417496594 0.000000e+00 2154
2 TraesCS4B01G342200 chr2B 93.350 797 47 3 1303 2097 243970200 243970992 0.000000e+00 1173
3 TraesCS4B01G342200 chr2B 93.225 797 50 3 1303 2097 768979058 768979852 0.000000e+00 1170
4 TraesCS4B01G342200 chr2B 97.175 177 5 0 2099 2275 251535467 251535291 1.320000e-77 300
5 TraesCS4B01G342200 chr2B 96.154 182 7 0 2094 2275 53965859 53965678 4.750000e-77 298
6 TraesCS4B01G342200 chr6B 90.993 1299 110 2 6 1303 522025000 522023708 0.000000e+00 1744
7 TraesCS4B01G342200 chr6B 90.414 1304 122 3 1 1303 218018315 218017014 0.000000e+00 1712
8 TraesCS4B01G342200 chr6B 88.352 1305 146 6 1 1303 119509391 119508091 0.000000e+00 1563
9 TraesCS4B01G342200 chr6B 93.225 797 48 3 1303 2097 668198748 668199540 0.000000e+00 1168
10 TraesCS4B01G342200 chr2D 89.893 1306 128 4 1 1304 116761868 116763171 0.000000e+00 1677
11 TraesCS4B01G342200 chr2A 89.365 1307 135 4 1 1304 769612975 769614280 0.000000e+00 1640
12 TraesCS4B01G342200 chr5A 89.169 1311 139 3 1 1309 79273160 79274469 0.000000e+00 1631
13 TraesCS4B01G342200 chr6A 88.829 1307 142 4 1 1304 510872210 510873515 0.000000e+00 1602
14 TraesCS4B01G342200 chr4A 88.479 1302 144 6 6 1304 660342122 660343420 0.000000e+00 1568
15 TraesCS4B01G342200 chr4A 97.175 177 5 0 2099 2275 645908986 645908810 1.320000e-77 300
16 TraesCS4B01G342200 chr4A 97.175 177 5 0 2099 2275 669912849 669912673 1.320000e-77 300
17 TraesCS4B01G342200 chr5D 93.358 798 45 5 1303 2097 378719352 378718560 0.000000e+00 1173
18 TraesCS4B01G342200 chr5D 93.099 797 49 4 1303 2097 300481462 300482254 0.000000e+00 1162
19 TraesCS4B01G342200 chr4D 93.350 797 47 3 1303 2097 418162851 418163643 0.000000e+00 1173
20 TraesCS4B01G342200 chr3B 93.350 797 47 3 1303 2097 702548538 702549330 0.000000e+00 1173
21 TraesCS4B01G342200 chr3B 93.225 797 48 3 1303 2097 590112425 590111633 0.000000e+00 1168
22 TraesCS4B01G342200 chr1D 93.225 797 51 3 1303 2097 206891722 206892517 0.000000e+00 1170
23 TraesCS4B01G342200 chr7A 97.740 177 4 0 2099 2275 732193999 732194175 2.840000e-79 305
24 TraesCS4B01G342200 chr1B 97.740 177 4 0 2099 2275 6589459 6589635 2.840000e-79 305
25 TraesCS4B01G342200 chr1B 97.740 177 4 0 2099 2275 659067981 659067805 2.840000e-79 305
26 TraesCS4B01G342200 chr1B 97.714 175 4 0 2099 2273 676431147 676431321 3.670000e-78 302
27 TraesCS4B01G342200 chr5B 97.175 177 5 0 2099 2275 571020761 571020585 1.320000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G342200 chr4B 635322037 635324312 2275 True 4204 4204 100.000 1 2276 1 chr4B.!!$R1 2275
1 TraesCS4B01G342200 chr2B 417496594 417497898 1304 True 2154 2154 96.475 1 1304 1 chr2B.!!$R3 1303
2 TraesCS4B01G342200 chr2B 243970200 243970992 792 False 1173 1173 93.350 1303 2097 1 chr2B.!!$F1 794
3 TraesCS4B01G342200 chr2B 768979058 768979852 794 False 1170 1170 93.225 1303 2097 1 chr2B.!!$F2 794
4 TraesCS4B01G342200 chr6B 522023708 522025000 1292 True 1744 1744 90.993 6 1303 1 chr6B.!!$R3 1297
5 TraesCS4B01G342200 chr6B 218017014 218018315 1301 True 1712 1712 90.414 1 1303 1 chr6B.!!$R2 1302
6 TraesCS4B01G342200 chr6B 119508091 119509391 1300 True 1563 1563 88.352 1 1303 1 chr6B.!!$R1 1302
7 TraesCS4B01G342200 chr6B 668198748 668199540 792 False 1168 1168 93.225 1303 2097 1 chr6B.!!$F1 794
8 TraesCS4B01G342200 chr2D 116761868 116763171 1303 False 1677 1677 89.893 1 1304 1 chr2D.!!$F1 1303
9 TraesCS4B01G342200 chr2A 769612975 769614280 1305 False 1640 1640 89.365 1 1304 1 chr2A.!!$F1 1303
10 TraesCS4B01G342200 chr5A 79273160 79274469 1309 False 1631 1631 89.169 1 1309 1 chr5A.!!$F1 1308
11 TraesCS4B01G342200 chr6A 510872210 510873515 1305 False 1602 1602 88.829 1 1304 1 chr6A.!!$F1 1303
12 TraesCS4B01G342200 chr4A 660342122 660343420 1298 False 1568 1568 88.479 6 1304 1 chr4A.!!$F1 1298
13 TraesCS4B01G342200 chr5D 378718560 378719352 792 True 1173 1173 93.358 1303 2097 1 chr5D.!!$R1 794
14 TraesCS4B01G342200 chr5D 300481462 300482254 792 False 1162 1162 93.099 1303 2097 1 chr5D.!!$F1 794
15 TraesCS4B01G342200 chr4D 418162851 418163643 792 False 1173 1173 93.350 1303 2097 1 chr4D.!!$F1 794
16 TraesCS4B01G342200 chr3B 702548538 702549330 792 False 1173 1173 93.350 1303 2097 1 chr3B.!!$F1 794
17 TraesCS4B01G342200 chr3B 590111633 590112425 792 True 1168 1168 93.225 1303 2097 1 chr3B.!!$R1 794
18 TraesCS4B01G342200 chr1D 206891722 206892517 795 False 1170 1170 93.225 1303 2097 1 chr1D.!!$F1 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 640 2.079158 CAAGCTGGTGACGATCATGTT 58.921 47.619 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2190 0.033109 GACTAAAGGGCCAGGGCATT 60.033 55.0 16.36 11.91 44.11 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
256 257 2.757314 TCGTGCTCTCATGACTCAGAAT 59.243 45.455 0.00 0.00 33.54 2.40
475 476 6.228995 TCAGCATGAAGATTAGGACATGATC 58.771 40.000 0.00 0.00 45.97 2.92
639 640 2.079158 CAAGCTGGTGACGATCATGTT 58.921 47.619 0.00 0.00 0.00 2.71
651 652 3.326006 ACGATCATGTTGGCTATCTGGAT 59.674 43.478 0.00 0.00 0.00 3.41
668 669 6.101650 TCTGGATGTCACGCAATAATCTAT 57.898 37.500 0.00 0.00 0.00 1.98
920 922 6.391649 TGGTGTAAACCTTATCAGGGGATTAT 59.608 38.462 3.10 0.00 46.01 1.28
935 937 3.844804 GGGATTATCGACCCCCTTATCTT 59.155 47.826 0.00 0.00 40.19 2.40
1034 1036 2.737039 GCTTGGAGGTCGTCAATCTCTC 60.737 54.545 0.00 0.00 0.00 3.20
1080 1082 1.107538 TCGTGGCGCCTATCTTAGCT 61.108 55.000 29.70 0.00 0.00 3.32
1193 1195 2.794103 TGCAAGCACACTGGATGTAAT 58.206 42.857 0.00 0.00 40.64 1.89
1210 1212 7.667635 TGGATGTAATAGAATGTTGGTTTGACA 59.332 33.333 0.00 0.00 0.00 3.58
1243 1246 5.126067 GCATCATTTTAACTAGCCTCCTCA 58.874 41.667 0.00 0.00 0.00 3.86
1248 1251 4.803098 TTTAACTAGCCTCCTCACAGAC 57.197 45.455 0.00 0.00 0.00 3.51
1263 1266 2.270527 GACTCTGCAGGGGCTTCC 59.729 66.667 20.01 0.00 41.91 3.46
1334 1338 2.937469 TGACCGCCAATGCATTTTAG 57.063 45.000 9.83 2.78 37.32 1.85
1380 1384 4.541250 AGGGGAATCCAAATATGCTTCA 57.459 40.909 0.09 0.00 38.24 3.02
1385 1389 6.042437 GGGGAATCCAAATATGCTTCATCTTT 59.958 38.462 0.09 0.00 35.00 2.52
1402 1406 2.880890 TCTTTTGTCCTTGAGCTCTTGC 59.119 45.455 16.19 1.62 40.05 4.01
1412 1416 2.318908 TGAGCTCTTGCCAAACCAATT 58.681 42.857 16.19 0.00 40.80 2.32
1419 1424 5.782047 CTCTTGCCAAACCAATTCACATAA 58.218 37.500 0.00 0.00 0.00 1.90
1429 1434 4.006989 CCAATTCACATAAGGTTGTCCGA 58.993 43.478 0.00 0.00 39.05 4.55
1430 1435 4.457603 CCAATTCACATAAGGTTGTCCGAA 59.542 41.667 0.00 0.00 39.05 4.30
1510 1516 4.575973 GGCAGCGATGGCATCCCT 62.576 66.667 23.35 15.16 43.41 4.20
1534 1540 4.194720 CGAGTTCCTCGCCTCCCG 62.195 72.222 0.20 0.00 46.75 5.14
1535 1541 3.069318 GAGTTCCTCGCCTCCCGT 61.069 66.667 0.00 0.00 38.35 5.28
1693 1699 2.093447 CCGCACAGAGGGAGTAGAAAAT 60.093 50.000 0.00 0.00 0.00 1.82
1746 1752 1.336755 GCCGCAAGAAAGAAAAGGACA 59.663 47.619 0.00 0.00 43.02 4.02
1878 1888 5.828747 ACTAGTAGTTAGTGTGTGTGTGTG 58.171 41.667 0.00 0.00 41.10 3.82
1879 1889 4.730949 AGTAGTTAGTGTGTGTGTGTGT 57.269 40.909 0.00 0.00 0.00 3.72
1880 1890 5.080969 AGTAGTTAGTGTGTGTGTGTGTT 57.919 39.130 0.00 0.00 0.00 3.32
1891 1901 1.737236 TGTGTGTGTTTGTGTCTGAGC 59.263 47.619 0.00 0.00 0.00 4.26
1991 2001 5.594926 GGAAAAATTCCTGTCCTATGCATG 58.405 41.667 10.16 0.00 46.57 4.06
2042 2052 3.856104 GATGCATGTCATCTCACTTCG 57.144 47.619 2.46 0.00 46.29 3.79
2052 2062 7.905604 TGTCATCTCACTTCGTATGATTTTT 57.094 32.000 0.00 0.00 31.49 1.94
2092 2102 5.787494 TCCTATCCTATGAATGAAAGGAGGG 59.213 44.000 0.00 0.00 42.53 4.30
2097 2107 4.141298 CCTATGAATGAAAGGAGGGCTCTT 60.141 45.833 0.00 0.00 31.64 2.85
2098 2108 5.072329 CCTATGAATGAAAGGAGGGCTCTTA 59.928 44.000 0.00 0.00 31.64 2.10
2099 2109 4.222124 TGAATGAAAGGAGGGCTCTTAC 57.778 45.455 0.00 0.00 0.00 2.34
2100 2110 3.846588 TGAATGAAAGGAGGGCTCTTACT 59.153 43.478 0.00 0.00 0.00 2.24
2101 2111 5.030147 TGAATGAAAGGAGGGCTCTTACTA 58.970 41.667 0.00 0.00 0.00 1.82
2102 2112 5.129485 TGAATGAAAGGAGGGCTCTTACTAG 59.871 44.000 0.00 0.00 0.00 2.57
2103 2113 4.062490 TGAAAGGAGGGCTCTTACTAGT 57.938 45.455 0.00 0.00 0.00 2.57
2104 2114 5.202746 TGAAAGGAGGGCTCTTACTAGTA 57.797 43.478 0.00 0.00 0.00 1.82
2105 2115 5.202004 TGAAAGGAGGGCTCTTACTAGTAG 58.798 45.833 2.23 0.00 0.00 2.57
2106 2116 5.044328 TGAAAGGAGGGCTCTTACTAGTAGA 60.044 44.000 3.59 2.80 0.00 2.59
2107 2117 5.673130 AAGGAGGGCTCTTACTAGTAGAT 57.327 43.478 3.59 0.00 0.00 1.98
2108 2118 6.783517 AAGGAGGGCTCTTACTAGTAGATA 57.216 41.667 3.59 0.00 0.00 1.98
2109 2119 6.783517 AGGAGGGCTCTTACTAGTAGATAA 57.216 41.667 3.59 0.00 0.00 1.75
2110 2120 7.164233 AGGAGGGCTCTTACTAGTAGATAAA 57.836 40.000 3.59 0.00 0.00 1.40
2111 2121 7.005902 AGGAGGGCTCTTACTAGTAGATAAAC 58.994 42.308 3.59 0.00 0.00 2.01
2112 2122 6.209192 GGAGGGCTCTTACTAGTAGATAAACC 59.791 46.154 3.59 3.57 0.00 3.27
2113 2123 6.680540 AGGGCTCTTACTAGTAGATAAACCA 58.319 40.000 3.59 0.00 0.00 3.67
2114 2124 6.550481 AGGGCTCTTACTAGTAGATAAACCAC 59.450 42.308 3.59 0.00 0.00 4.16
2115 2125 6.239261 GGGCTCTTACTAGTAGATAAACCACC 60.239 46.154 3.59 0.00 0.00 4.61
2116 2126 6.323225 GGCTCTTACTAGTAGATAAACCACCA 59.677 42.308 3.59 0.00 0.00 4.17
2117 2127 7.015389 GGCTCTTACTAGTAGATAAACCACCAT 59.985 40.741 3.59 0.00 0.00 3.55
2118 2128 8.422566 GCTCTTACTAGTAGATAAACCACCATT 58.577 37.037 3.59 0.00 0.00 3.16
2123 2133 8.247666 ACTAGTAGATAAACCACCATTAGTCC 57.752 38.462 3.59 0.00 0.00 3.85
2124 2134 6.496144 AGTAGATAAACCACCATTAGTCCC 57.504 41.667 0.00 0.00 0.00 4.46
2125 2135 4.417426 AGATAAACCACCATTAGTCCCG 57.583 45.455 0.00 0.00 0.00 5.14
2126 2136 3.135895 AGATAAACCACCATTAGTCCCGG 59.864 47.826 0.00 0.00 0.00 5.73
2127 2137 1.069775 AAACCACCATTAGTCCCGGT 58.930 50.000 0.00 0.00 0.00 5.28
2128 2138 1.069775 AACCACCATTAGTCCCGGTT 58.930 50.000 0.00 0.00 29.61 4.44
2129 2139 0.326927 ACCACCATTAGTCCCGGTTG 59.673 55.000 0.00 0.00 0.00 3.77
2130 2140 0.393808 CCACCATTAGTCCCGGTTGG 60.394 60.000 0.00 0.00 0.00 3.77
2131 2141 0.326927 CACCATTAGTCCCGGTTGGT 59.673 55.000 0.00 0.53 41.27 3.67
2132 2142 1.555992 CACCATTAGTCCCGGTTGGTA 59.444 52.381 0.00 0.00 38.61 3.25
2133 2143 2.027007 CACCATTAGTCCCGGTTGGTAA 60.027 50.000 0.00 0.00 38.61 2.85
2134 2144 2.237893 ACCATTAGTCCCGGTTGGTAAG 59.762 50.000 0.00 0.00 38.87 2.34
2135 2145 2.420967 CCATTAGTCCCGGTTGGTAAGG 60.421 54.545 0.00 0.00 34.77 2.69
2136 2146 2.028561 TTAGTCCCGGTTGGTAAGGT 57.971 50.000 0.00 0.00 34.77 3.50
2137 2147 1.560505 TAGTCCCGGTTGGTAAGGTC 58.439 55.000 0.00 0.00 34.77 3.85
2138 2148 1.196766 AGTCCCGGTTGGTAAGGTCC 61.197 60.000 0.00 0.00 34.77 4.46
2139 2149 1.159184 TCCCGGTTGGTAAGGTCCT 59.841 57.895 0.00 0.00 34.77 3.85
2140 2150 0.474273 TCCCGGTTGGTAAGGTCCTT 60.474 55.000 9.62 9.62 34.77 3.36
2141 2151 0.402887 CCCGGTTGGTAAGGTCCTTT 59.597 55.000 10.04 0.00 0.00 3.11
2142 2152 1.202964 CCCGGTTGGTAAGGTCCTTTT 60.203 52.381 10.04 0.00 0.00 2.27
2143 2153 1.883926 CCGGTTGGTAAGGTCCTTTTG 59.116 52.381 10.04 0.00 0.00 2.44
2144 2154 2.578786 CGGTTGGTAAGGTCCTTTTGT 58.421 47.619 10.04 0.00 0.00 2.83
2145 2155 2.551032 CGGTTGGTAAGGTCCTTTTGTC 59.449 50.000 10.04 0.00 0.00 3.18
2146 2156 2.889045 GGTTGGTAAGGTCCTTTTGTCC 59.111 50.000 10.04 8.39 0.00 4.02
2147 2157 2.889045 GTTGGTAAGGTCCTTTTGTCCC 59.111 50.000 10.04 3.57 0.00 4.46
2148 2158 1.072648 TGGTAAGGTCCTTTTGTCCCG 59.927 52.381 10.04 0.00 0.00 5.14
2149 2159 1.612462 GGTAAGGTCCTTTTGTCCCGG 60.612 57.143 10.04 0.00 0.00 5.73
2150 2160 1.072806 GTAAGGTCCTTTTGTCCCGGT 59.927 52.381 10.04 0.00 0.00 5.28
2151 2161 0.554305 AAGGTCCTTTTGTCCCGGTT 59.446 50.000 0.00 0.00 0.00 4.44
2152 2162 0.109913 AGGTCCTTTTGTCCCGGTTC 59.890 55.000 0.00 0.00 0.00 3.62
2153 2163 0.892358 GGTCCTTTTGTCCCGGTTCC 60.892 60.000 0.00 0.00 0.00 3.62
2154 2164 0.109913 GTCCTTTTGTCCCGGTTCCT 59.890 55.000 0.00 0.00 0.00 3.36
2155 2165 0.109723 TCCTTTTGTCCCGGTTCCTG 59.890 55.000 0.00 0.00 0.00 3.86
2156 2166 0.109723 CCTTTTGTCCCGGTTCCTGA 59.890 55.000 0.00 0.00 0.00 3.86
2157 2167 1.477923 CCTTTTGTCCCGGTTCCTGAA 60.478 52.381 0.00 0.00 0.00 3.02
2158 2168 1.607148 CTTTTGTCCCGGTTCCTGAAC 59.393 52.381 0.00 1.33 40.45 3.18
2168 2178 2.845363 GTTCCTGAACCGGGACTAAA 57.155 50.000 6.32 0.00 38.83 1.85
2169 2179 2.696506 GTTCCTGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 38.83 1.85
2170 2180 1.272807 TCCTGAACCGGGACTAAAGG 58.727 55.000 6.32 3.89 33.41 3.11
2171 2181 0.252197 CCTGAACCGGGACTAAAGGG 59.748 60.000 6.32 0.00 29.82 3.95
2172 2182 0.981943 CTGAACCGGGACTAAAGGGT 59.018 55.000 6.32 0.00 0.00 4.34
2173 2183 0.978907 TGAACCGGGACTAAAGGGTC 59.021 55.000 6.32 0.00 41.92 4.46
2174 2184 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
2175 2185 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
2176 2186 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
2177 2187 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
2178 2188 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
2179 2189 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
2180 2190 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
2181 2191 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
2182 2192 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
2183 2193 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
2184 2194 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
2185 2195 4.763073 ACTAAAGGGTCGTTACTAATGCC 58.237 43.478 0.00 0.00 0.00 4.40
2186 2196 2.704464 AAGGGTCGTTACTAATGCCC 57.296 50.000 10.40 10.40 35.35 5.36
2187 2197 1.875488 AGGGTCGTTACTAATGCCCT 58.125 50.000 13.37 13.37 38.46 5.19
2188 2198 1.485066 AGGGTCGTTACTAATGCCCTG 59.515 52.381 16.38 0.00 40.36 4.45
2189 2199 1.474498 GGGTCGTTACTAATGCCCTGG 60.474 57.143 10.85 0.00 33.56 4.45
2190 2200 1.296727 GTCGTTACTAATGCCCTGGC 58.703 55.000 0.00 0.00 42.35 4.85
2191 2201 0.179468 TCGTTACTAATGCCCTGGCC 59.821 55.000 5.57 0.00 41.09 5.36
2192 2202 0.818040 CGTTACTAATGCCCTGGCCC 60.818 60.000 5.57 0.00 41.09 5.80
2193 2203 0.551396 GTTACTAATGCCCTGGCCCT 59.449 55.000 5.57 0.00 41.09 5.19
2194 2204 1.063942 GTTACTAATGCCCTGGCCCTT 60.064 52.381 5.57 2.18 41.09 3.95
2195 2205 1.304891 TACTAATGCCCTGGCCCTTT 58.695 50.000 5.57 0.00 41.09 3.11
2196 2206 1.304891 ACTAATGCCCTGGCCCTTTA 58.695 50.000 5.57 1.05 41.09 1.85
2197 2207 1.215423 ACTAATGCCCTGGCCCTTTAG 59.785 52.381 5.57 12.04 41.09 1.85
2198 2208 1.215423 CTAATGCCCTGGCCCTTTAGT 59.785 52.381 5.57 0.00 41.09 2.24
2199 2209 0.033109 AATGCCCTGGCCCTTTAGTC 60.033 55.000 5.57 0.00 41.09 2.59
2200 2210 1.937924 ATGCCCTGGCCCTTTAGTCC 61.938 60.000 5.57 0.00 41.09 3.85
2201 2211 3.007542 CCCTGGCCCTTTAGTCCC 58.992 66.667 0.00 0.00 0.00 4.46
2202 2212 2.590092 CCTGGCCCTTTAGTCCCG 59.410 66.667 0.00 0.00 0.00 5.14
2203 2213 2.590092 CTGGCCCTTTAGTCCCGG 59.410 66.667 0.00 0.00 0.00 5.73
2204 2214 2.204029 TGGCCCTTTAGTCCCGGT 60.204 61.111 0.00 0.00 0.00 5.28
2205 2215 1.848886 CTGGCCCTTTAGTCCCGGTT 61.849 60.000 0.00 0.00 0.00 4.44
2206 2216 1.077930 GGCCCTTTAGTCCCGGTTC 60.078 63.158 0.00 0.00 0.00 3.62
2207 2217 1.681076 GCCCTTTAGTCCCGGTTCA 59.319 57.895 0.00 0.00 0.00 3.18
2208 2218 0.392595 GCCCTTTAGTCCCGGTTCAG 60.393 60.000 0.00 0.00 0.00 3.02
2209 2219 0.981943 CCCTTTAGTCCCGGTTCAGT 59.018 55.000 0.00 0.00 0.00 3.41
2210 2220 1.066358 CCCTTTAGTCCCGGTTCAGTC 60.066 57.143 0.00 0.00 0.00 3.51
2211 2221 1.066358 CCTTTAGTCCCGGTTCAGTCC 60.066 57.143 0.00 0.00 0.00 3.85
2212 2222 1.621814 CTTTAGTCCCGGTTCAGTCCA 59.378 52.381 0.00 0.00 0.00 4.02
2213 2223 1.263356 TTAGTCCCGGTTCAGTCCAG 58.737 55.000 0.00 0.00 0.00 3.86
2214 2224 0.406750 TAGTCCCGGTTCAGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
2215 2225 0.471211 AGTCCCGGTTCAGTCCAGAA 60.471 55.000 0.00 0.00 0.00 3.02
2216 2226 0.320508 GTCCCGGTTCAGTCCAGAAC 60.321 60.000 0.00 0.00 45.50 3.01
2220 2230 4.695560 GTTCAGTCCAGAACCGGG 57.304 61.111 6.32 0.00 41.52 5.73
2221 2231 2.055299 GTTCAGTCCAGAACCGGGA 58.945 57.895 6.32 0.00 41.52 5.14
2226 2236 4.887957 TCCAGAACCGGGACAGAT 57.112 55.556 6.32 0.00 0.00 2.90
2227 2237 2.286826 TCCAGAACCGGGACAGATG 58.713 57.895 6.32 0.00 0.00 2.90
2228 2238 1.221840 CCAGAACCGGGACAGATGG 59.778 63.158 6.32 0.80 0.00 3.51
2229 2239 1.221840 CAGAACCGGGACAGATGGG 59.778 63.158 6.32 0.00 0.00 4.00
2230 2240 2.124695 GAACCGGGACAGATGGGC 60.125 66.667 6.32 0.00 0.00 5.36
2231 2241 3.699134 GAACCGGGACAGATGGGCC 62.699 68.421 6.32 0.00 0.00 5.80
2232 2242 4.741239 ACCGGGACAGATGGGCCT 62.741 66.667 6.32 0.00 0.00 5.19
2233 2243 3.866582 CCGGGACAGATGGGCCTC 61.867 72.222 4.53 0.00 0.00 4.70
2234 2244 3.866582 CGGGACAGATGGGCCTCC 61.867 72.222 4.53 2.00 0.00 4.30
2246 2256 2.753043 GCCTCCACATGGCTGGTG 60.753 66.667 0.00 0.00 46.38 4.17
2247 2257 2.753043 CCTCCACATGGCTGGTGC 60.753 66.667 0.00 0.00 34.94 5.01
2248 2258 3.129502 CTCCACATGGCTGGTGCG 61.130 66.667 0.00 0.00 40.82 5.34
2272 2282 4.351054 CCACGCAGGAGGGCCTTT 62.351 66.667 7.89 0.00 43.90 3.11
2273 2283 3.058160 CACGCAGGAGGGCCTTTG 61.058 66.667 7.89 11.19 43.90 2.77
2274 2284 4.351054 ACGCAGGAGGGCCTTTGG 62.351 66.667 7.89 6.70 43.90 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
226 227 2.859526 TGAGAGCACGATAAGCTGAG 57.140 50.000 0.00 0.00 43.58 3.35
475 476 3.305608 GGGAGCAGTTCAACAAAGAATGG 60.306 47.826 0.00 0.00 0.00 3.16
479 480 2.727123 TGGGAGCAGTTCAACAAAGA 57.273 45.000 0.00 0.00 0.00 2.52
639 640 0.104855 GCGTGACATCCAGATAGCCA 59.895 55.000 0.00 0.00 0.00 4.75
651 652 6.748132 TCATGAGATAGATTATTGCGTGACA 58.252 36.000 0.00 0.00 0.00 3.58
668 669 5.163405 GGTCAGTAGCACCTTTATCATGAGA 60.163 44.000 0.09 0.00 0.00 3.27
830 832 2.370349 CTCCTCTTCGAGCTTCCACTA 58.630 52.381 0.00 0.00 0.00 2.74
920 922 3.307904 GGTTTCAAAGATAAGGGGGTCGA 60.308 47.826 0.00 0.00 0.00 4.20
935 937 1.340600 CCCGGATTGCTAGGGTTTCAA 60.341 52.381 0.73 0.00 40.27 2.69
1058 1060 1.096967 TAAGATAGGCGCCACGACGA 61.097 55.000 31.54 6.59 41.28 4.20
1080 1082 7.246171 ACTAGTAGAGAGCTCCAAAATTTCA 57.754 36.000 10.93 0.00 0.00 2.69
1193 1195 3.568007 GGCAGTGTCAAACCAACATTCTA 59.432 43.478 0.00 0.00 0.00 2.10
1228 1231 4.017808 GAGTCTGTGAGGAGGCTAGTTAA 58.982 47.826 0.00 0.00 0.00 2.01
1243 1246 1.835927 GAAGCCCCTGCAGAGTCTGT 61.836 60.000 21.06 0.00 41.13 3.41
1248 1251 1.035932 CAATGGAAGCCCCTGCAGAG 61.036 60.000 17.39 0.01 41.13 3.35
1263 1266 7.894376 ACATTTGGAGCTTTATTCAACAATG 57.106 32.000 0.00 0.00 0.00 2.82
1334 1338 6.053005 TCAATCCTGGTCATTTATTACCGAC 58.947 40.000 0.00 0.00 38.70 4.79
1373 1377 4.082354 GCTCAAGGACAAAAGATGAAGCAT 60.082 41.667 0.00 0.00 0.00 3.79
1380 1384 3.505293 GCAAGAGCTCAAGGACAAAAGAT 59.495 43.478 17.77 0.00 37.91 2.40
1385 1389 0.473755 TGGCAAGAGCTCAAGGACAA 59.526 50.000 17.77 0.00 41.70 3.18
1402 1406 5.852827 ACAACCTTATGTGAATTGGTTTGG 58.147 37.500 0.00 0.00 38.76 3.28
1412 1416 3.070446 AGTGTTCGGACAACCTTATGTGA 59.930 43.478 0.00 0.00 37.57 3.58
1419 1424 0.106149 GTGGAGTGTTCGGACAACCT 59.894 55.000 18.24 4.96 37.57 3.50
1429 1434 1.462238 AGCTCTGGGGTGGAGTGTT 60.462 57.895 0.00 0.00 33.73 3.32
1430 1435 1.915769 GAGCTCTGGGGTGGAGTGT 60.916 63.158 6.43 0.00 33.73 3.55
1458 1463 3.418913 CGCGGTGGCATGAACGAA 61.419 61.111 0.00 0.00 39.92 3.85
1534 1540 1.729131 CCATTTTGTGCGCGGTCAC 60.729 57.895 8.83 9.28 37.48 3.67
1535 1541 0.885150 TACCATTTTGTGCGCGGTCA 60.885 50.000 8.83 0.00 0.00 4.02
1542 1548 1.135402 CGCTTCCCTACCATTTTGTGC 60.135 52.381 0.00 0.00 0.00 4.57
1616 1622 3.765511 CCTTGGCATCTTCAAATTCCTCA 59.234 43.478 0.00 0.00 0.00 3.86
1693 1699 6.115446 TCTCTTTTCTTGAGTGCTTTCTGAA 58.885 36.000 0.00 0.00 33.59 3.02
1878 1888 0.233332 GCTCGTGCTCAGACACAAAC 59.767 55.000 1.41 0.00 40.73 2.93
1879 1889 0.179086 TGCTCGTGCTCAGACACAAA 60.179 50.000 11.19 0.00 40.73 2.83
1880 1890 0.033920 ATGCTCGTGCTCAGACACAA 59.966 50.000 11.19 0.00 40.73 3.33
1891 1901 2.941453 AGTACTGGTACATGCTCGTG 57.059 50.000 12.54 0.00 38.20 4.35
1937 1947 8.145122 AGTCTAGGCTAATGTGCTAGTAATTTC 58.855 37.037 0.00 0.00 0.00 2.17
1945 1955 6.553476 TCCATTTAGTCTAGGCTAATGTGCTA 59.447 38.462 17.26 2.15 31.83 3.49
1948 1958 8.506168 TTTTCCATTTAGTCTAGGCTAATGTG 57.494 34.615 17.26 17.11 31.83 3.21
1991 2001 7.675062 TCCTATAGAGAAAGAGATGCCATTTC 58.325 38.462 0.00 0.00 33.97 2.17
2092 2102 7.344095 TGGTGGTTTATCTACTAGTAAGAGC 57.656 40.000 3.76 0.00 0.00 4.09
2097 2107 9.359653 GGACTAATGGTGGTTTATCTACTAGTA 57.640 37.037 1.89 1.89 0.00 1.82
2098 2108 7.289549 GGGACTAATGGTGGTTTATCTACTAGT 59.710 40.741 0.00 0.00 0.00 2.57
2099 2109 7.523380 CGGGACTAATGGTGGTTTATCTACTAG 60.523 44.444 0.00 0.00 0.00 2.57
2100 2110 6.266103 CGGGACTAATGGTGGTTTATCTACTA 59.734 42.308 0.00 0.00 0.00 1.82
2101 2111 5.070047 CGGGACTAATGGTGGTTTATCTACT 59.930 44.000 0.00 0.00 0.00 2.57
2102 2112 5.295152 CGGGACTAATGGTGGTTTATCTAC 58.705 45.833 0.00 0.00 0.00 2.59
2103 2113 4.345837 CCGGGACTAATGGTGGTTTATCTA 59.654 45.833 0.00 0.00 0.00 1.98
2104 2114 3.135895 CCGGGACTAATGGTGGTTTATCT 59.864 47.826 0.00 0.00 0.00 1.98
2105 2115 3.118149 ACCGGGACTAATGGTGGTTTATC 60.118 47.826 6.32 0.00 33.91 1.75
2106 2116 2.848071 ACCGGGACTAATGGTGGTTTAT 59.152 45.455 6.32 0.00 33.91 1.40
2107 2117 2.268107 ACCGGGACTAATGGTGGTTTA 58.732 47.619 6.32 0.00 33.91 2.01
2108 2118 1.069775 ACCGGGACTAATGGTGGTTT 58.930 50.000 6.32 0.00 33.91 3.27
2109 2119 1.069775 AACCGGGACTAATGGTGGTT 58.930 50.000 6.32 0.00 35.79 3.67
2110 2120 0.326927 CAACCGGGACTAATGGTGGT 59.673 55.000 6.32 0.00 35.79 4.16
2111 2121 0.393808 CCAACCGGGACTAATGGTGG 60.394 60.000 6.32 0.00 40.01 4.61
2112 2122 0.326927 ACCAACCGGGACTAATGGTG 59.673 55.000 6.32 0.00 42.57 4.17
2113 2123 1.955451 TACCAACCGGGACTAATGGT 58.045 50.000 6.32 12.41 45.81 3.55
2114 2124 2.420967 CCTTACCAACCGGGACTAATGG 60.421 54.545 6.32 6.76 41.15 3.16
2115 2125 2.237893 ACCTTACCAACCGGGACTAATG 59.762 50.000 6.32 0.00 41.15 1.90
2116 2126 2.502947 GACCTTACCAACCGGGACTAAT 59.497 50.000 6.32 0.00 41.15 1.73
2117 2127 1.901833 GACCTTACCAACCGGGACTAA 59.098 52.381 6.32 0.00 41.15 2.24
2118 2128 1.560505 GACCTTACCAACCGGGACTA 58.439 55.000 6.32 0.00 41.15 2.59
2119 2129 1.196766 GGACCTTACCAACCGGGACT 61.197 60.000 6.32 0.00 41.15 3.85
2120 2130 1.196766 AGGACCTTACCAACCGGGAC 61.197 60.000 6.32 0.00 41.15 4.46
2121 2131 0.474273 AAGGACCTTACCAACCGGGA 60.474 55.000 4.44 0.00 41.15 5.14
2122 2132 0.402887 AAAGGACCTTACCAACCGGG 59.597 55.000 7.30 0.00 44.81 5.73
2123 2133 1.883926 CAAAAGGACCTTACCAACCGG 59.116 52.381 7.30 0.00 38.77 5.28
2124 2134 2.551032 GACAAAAGGACCTTACCAACCG 59.449 50.000 7.30 0.00 0.00 4.44
2125 2135 2.889045 GGACAAAAGGACCTTACCAACC 59.111 50.000 7.30 4.60 0.00 3.77
2126 2136 2.889045 GGGACAAAAGGACCTTACCAAC 59.111 50.000 7.30 0.00 0.00 3.77
2127 2137 2.487625 CGGGACAAAAGGACCTTACCAA 60.488 50.000 7.30 0.00 0.00 3.67
2128 2138 1.072648 CGGGACAAAAGGACCTTACCA 59.927 52.381 7.30 0.00 0.00 3.25
2129 2139 1.612462 CCGGGACAAAAGGACCTTACC 60.612 57.143 7.30 8.84 0.00 2.85
2130 2140 1.072806 ACCGGGACAAAAGGACCTTAC 59.927 52.381 7.30 0.00 0.00 2.34
2131 2141 1.437397 ACCGGGACAAAAGGACCTTA 58.563 50.000 7.30 0.00 0.00 2.69
2132 2142 0.554305 AACCGGGACAAAAGGACCTT 59.446 50.000 6.32 0.00 0.00 3.50
2133 2143 0.109913 GAACCGGGACAAAAGGACCT 59.890 55.000 6.32 0.00 0.00 3.85
2134 2144 0.892358 GGAACCGGGACAAAAGGACC 60.892 60.000 6.32 0.00 0.00 4.46
2135 2145 0.109913 AGGAACCGGGACAAAAGGAC 59.890 55.000 6.32 0.00 0.00 3.85
2136 2146 0.109723 CAGGAACCGGGACAAAAGGA 59.890 55.000 6.32 0.00 0.00 3.36
2137 2147 0.109723 TCAGGAACCGGGACAAAAGG 59.890 55.000 6.32 0.00 0.00 3.11
2138 2148 1.607148 GTTCAGGAACCGGGACAAAAG 59.393 52.381 6.32 0.00 35.36 2.27
2139 2149 1.682740 GTTCAGGAACCGGGACAAAA 58.317 50.000 6.32 0.00 35.36 2.44
2140 2150 3.407443 GTTCAGGAACCGGGACAAA 57.593 52.632 6.32 0.00 35.36 2.83
2149 2159 2.614734 CCTTTAGTCCCGGTTCAGGAAC 60.615 54.545 0.00 3.58 40.45 3.62
2150 2160 1.626825 CCTTTAGTCCCGGTTCAGGAA 59.373 52.381 0.00 0.00 34.43 3.36
2151 2161 1.272807 CCTTTAGTCCCGGTTCAGGA 58.727 55.000 0.00 0.00 0.00 3.86
2152 2162 0.252197 CCCTTTAGTCCCGGTTCAGG 59.748 60.000 0.00 0.00 0.00 3.86
2153 2163 0.981943 ACCCTTTAGTCCCGGTTCAG 59.018 55.000 0.00 0.00 0.00 3.02
2154 2164 0.978907 GACCCTTTAGTCCCGGTTCA 59.021 55.000 0.00 0.00 0.00 3.18
2155 2165 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
2156 2166 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
2157 2167 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
2158 2168 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
2159 2169 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
2160 2170 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
2161 2171 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
2162 2172 4.807834 GGCATTAGTAACGACCCTTTAGTC 59.192 45.833 0.00 0.00 0.00 2.59
2163 2173 4.383444 GGGCATTAGTAACGACCCTTTAGT 60.383 45.833 8.75 0.00 34.34 2.24
2164 2174 4.124970 GGGCATTAGTAACGACCCTTTAG 58.875 47.826 8.75 0.00 34.34 1.85
2165 2175 3.776417 AGGGCATTAGTAACGACCCTTTA 59.224 43.478 11.72 0.00 45.55 1.85
2166 2176 2.574824 AGGGCATTAGTAACGACCCTTT 59.425 45.455 11.72 0.00 45.55 3.11
2167 2177 2.093128 CAGGGCATTAGTAACGACCCTT 60.093 50.000 13.98 1.61 45.55 3.95
2168 2178 1.875488 AGGGCATTAGTAACGACCCT 58.125 50.000 11.72 11.72 42.97 4.34
2169 2179 1.474498 CCAGGGCATTAGTAACGACCC 60.474 57.143 0.00 3.07 37.63 4.46
2170 2180 1.949465 CCAGGGCATTAGTAACGACC 58.051 55.000 0.00 0.00 0.00 4.79
2171 2181 1.296727 GCCAGGGCATTAGTAACGAC 58.703 55.000 5.20 0.00 41.49 4.34
2172 2182 0.179468 GGCCAGGGCATTAGTAACGA 59.821 55.000 13.10 0.00 44.11 3.85
2173 2183 0.818040 GGGCCAGGGCATTAGTAACG 60.818 60.000 16.36 0.00 44.11 3.18
2174 2184 0.551396 AGGGCCAGGGCATTAGTAAC 59.449 55.000 16.36 0.00 44.11 2.50
2175 2185 1.304891 AAGGGCCAGGGCATTAGTAA 58.695 50.000 11.92 0.00 44.11 2.24
2176 2186 1.304891 AAAGGGCCAGGGCATTAGTA 58.695 50.000 14.11 0.00 44.11 1.82
2177 2187 1.215423 CTAAAGGGCCAGGGCATTAGT 59.785 52.381 14.11 1.26 44.11 2.24
2178 2188 1.215423 ACTAAAGGGCCAGGGCATTAG 59.785 52.381 24.91 24.91 44.11 1.73
2179 2189 1.214424 GACTAAAGGGCCAGGGCATTA 59.786 52.381 14.11 11.27 44.11 1.90
2180 2190 0.033109 GACTAAAGGGCCAGGGCATT 60.033 55.000 16.36 11.91 44.11 3.56
2181 2191 1.615262 GACTAAAGGGCCAGGGCAT 59.385 57.895 16.36 4.33 44.11 4.40
2182 2192 2.612493 GGACTAAAGGGCCAGGGCA 61.612 63.158 16.36 0.00 44.40 5.36
2183 2193 2.275748 GGACTAAAGGGCCAGGGC 59.724 66.667 6.18 3.77 44.40 5.19
2188 2198 1.077930 GAACCGGGACTAAAGGGCC 60.078 63.158 6.32 0.00 44.23 5.80
2189 2199 0.392595 CTGAACCGGGACTAAAGGGC 60.393 60.000 6.32 0.00 0.00 5.19
2190 2200 0.981943 ACTGAACCGGGACTAAAGGG 59.018 55.000 6.32 0.00 0.00 3.95
2191 2201 1.066358 GGACTGAACCGGGACTAAAGG 60.066 57.143 6.32 0.00 0.00 3.11
2192 2202 1.621814 TGGACTGAACCGGGACTAAAG 59.378 52.381 6.32 0.00 0.00 1.85
2193 2203 1.621814 CTGGACTGAACCGGGACTAAA 59.378 52.381 6.32 0.00 33.06 1.85
2194 2204 1.203087 TCTGGACTGAACCGGGACTAA 60.203 52.381 6.32 0.00 36.97 2.24
2195 2205 0.406750 TCTGGACTGAACCGGGACTA 59.593 55.000 6.32 0.00 36.97 2.59
2196 2206 0.471211 TTCTGGACTGAACCGGGACT 60.471 55.000 6.32 0.00 36.97 3.85
2197 2207 0.320508 GTTCTGGACTGAACCGGGAC 60.321 60.000 6.32 0.00 40.10 4.46
2198 2208 2.055299 GTTCTGGACTGAACCGGGA 58.945 57.895 6.32 0.00 40.10 5.14
2199 2209 4.695560 GTTCTGGACTGAACCGGG 57.304 61.111 6.32 0.00 40.10 5.73
2203 2213 2.055299 TCCCGGTTCTGGACTGAAC 58.945 57.895 12.04 12.04 43.88 3.18
2204 2214 4.631493 TCCCGGTTCTGGACTGAA 57.369 55.556 0.00 0.00 36.72 3.02
2209 2219 1.264749 CCATCTGTCCCGGTTCTGGA 61.265 60.000 0.00 0.00 0.00 3.86
2210 2220 1.221840 CCATCTGTCCCGGTTCTGG 59.778 63.158 0.00 0.00 0.00 3.86
2211 2221 1.221840 CCCATCTGTCCCGGTTCTG 59.778 63.158 0.00 0.00 0.00 3.02
2212 2222 2.670148 GCCCATCTGTCCCGGTTCT 61.670 63.158 0.00 0.00 0.00 3.01
2213 2223 2.124695 GCCCATCTGTCCCGGTTC 60.125 66.667 0.00 0.00 0.00 3.62
2214 2224 3.728373 GGCCCATCTGTCCCGGTT 61.728 66.667 0.00 0.00 0.00 4.44
2215 2225 4.741239 AGGCCCATCTGTCCCGGT 62.741 66.667 0.00 0.00 0.00 5.28
2216 2226 3.866582 GAGGCCCATCTGTCCCGG 61.867 72.222 0.00 0.00 0.00 5.73
2217 2227 3.866582 GGAGGCCCATCTGTCCCG 61.867 72.222 0.00 0.00 0.00 5.14
2218 2228 2.692368 TGGAGGCCCATCTGTCCC 60.692 66.667 0.00 0.00 37.58 4.46
2219 2229 1.639635 ATGTGGAGGCCCATCTGTCC 61.640 60.000 0.00 0.00 45.68 4.02
2220 2230 0.465097 CATGTGGAGGCCCATCTGTC 60.465 60.000 0.00 0.00 45.68 3.51
2221 2231 1.611419 CATGTGGAGGCCCATCTGT 59.389 57.895 0.00 0.00 45.68 3.41
2222 2232 1.152819 CCATGTGGAGGCCCATCTG 60.153 63.158 0.00 0.00 45.68 2.90
2223 2233 3.065787 GCCATGTGGAGGCCCATCT 62.066 63.158 0.00 0.00 46.50 2.90
2224 2234 2.520260 GCCATGTGGAGGCCCATC 60.520 66.667 0.00 0.00 46.50 3.51
2230 2240 2.753043 GCACCAGCCATGTGGAGG 60.753 66.667 9.25 6.34 40.44 4.30
2231 2241 3.129502 CGCACCAGCCATGTGGAG 61.130 66.667 9.25 2.68 40.44 3.86
2255 2265 4.351054 AAAGGCCCTCCTGCGTGG 62.351 66.667 0.00 0.00 43.40 4.94
2256 2266 3.058160 CAAAGGCCCTCCTGCGTG 61.058 66.667 0.00 0.00 43.40 5.34
2257 2267 4.351054 CCAAAGGCCCTCCTGCGT 62.351 66.667 0.00 0.00 43.40 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.