Multiple sequence alignment - TraesCS4B01G342100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G342100 chr4B 100.000 2872 0 0 1 2872 635028832 635031703 0.000000e+00 5304
1 TraesCS4B01G342100 chr4B 97.254 437 12 0 2435 2871 635040413 635040849 0.000000e+00 741
2 TraesCS4B01G342100 chr4B 96.575 438 13 2 2435 2871 34338878 34339314 0.000000e+00 725
3 TraesCS4B01G342100 chr4D 93.773 1654 61 14 817 2437 495129322 495130966 0.000000e+00 2446
4 TraesCS4B01G342100 chr4D 78.308 733 111 30 939 1662 495074300 495074993 2.040000e-116 429
5 TraesCS4B01G342100 chr4D 79.676 556 85 14 1087 1637 495520366 495520898 2.700000e-100 375
6 TraesCS4B01G342100 chr4D 80.237 253 35 10 1092 1341 501675397 501675157 2.940000e-40 176
7 TraesCS4B01G342100 chr5A 91.197 1704 104 19 763 2437 674937050 674938736 0.000000e+00 2274
8 TraesCS4B01G342100 chr5A 79.336 542 79 20 1132 1662 674852048 674852567 1.640000e-92 350
9 TraesCS4B01G342100 chr5A 79.336 542 79 20 1132 1662 674893260 674893779 1.640000e-92 350
10 TraesCS4B01G342100 chr5A 78.448 580 87 18 1087 1662 675319630 675319085 7.620000e-91 344
11 TraesCS4B01G342100 chr3D 94.993 759 37 1 4 762 503748287 503747530 0.000000e+00 1190
12 TraesCS4B01G342100 chr3D 93.561 761 49 0 1 761 191496313 191497073 0.000000e+00 1134
13 TraesCS4B01G342100 chr3D 91.568 759 61 3 1 758 3156435 3157191 0.000000e+00 1044
14 TraesCS4B01G342100 chr7D 94.350 761 40 3 1 761 68912828 68913585 0.000000e+00 1164
15 TraesCS4B01G342100 chr5D 93.923 757 46 0 4 760 460226621 460225865 0.000000e+00 1144
16 TraesCS4B01G342100 chr5D 92.480 758 55 2 4 760 483565836 483565080 0.000000e+00 1083
17 TraesCS4B01G342100 chr7B 92.593 756 54 2 6 760 374312210 374311456 0.000000e+00 1085
18 TraesCS4B01G342100 chr7B 96.599 441 13 2 2432 2871 596480281 596479842 0.000000e+00 730
19 TraesCS4B01G342100 chr3A 92.116 761 59 1 1 761 467876227 467875468 0.000000e+00 1072
20 TraesCS4B01G342100 chr4A 91.339 762 64 2 1 761 143443107 143443867 0.000000e+00 1040
21 TraesCS4B01G342100 chr5B 97.706 436 10 0 2436 2871 120183079 120183514 0.000000e+00 750
22 TraesCS4B01G342100 chr5B 97.025 437 12 1 2435 2871 6313090 6313525 0.000000e+00 734
23 TraesCS4B01G342100 chr2B 97.248 436 11 1 2436 2871 90662663 90662229 0.000000e+00 737
24 TraesCS4B01G342100 chr2B 96.796 437 13 1 2435 2871 262563756 262563321 0.000000e+00 728
25 TraesCS4B01G342100 chr1B 96.789 436 13 1 2436 2871 613011387 613011821 0.000000e+00 726
26 TraesCS4B01G342100 chr3B 96.583 439 12 2 2435 2871 697871161 697871598 0.000000e+00 725
27 TraesCS4B01G342100 chrUn 79.336 542 79 20 1132 1662 283623707 283624226 1.640000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G342100 chr4B 635028832 635031703 2871 False 5304 5304 100.000 1 2872 1 chr4B.!!$F2 2871
1 TraesCS4B01G342100 chr4D 495129322 495130966 1644 False 2446 2446 93.773 817 2437 1 chr4D.!!$F2 1620
2 TraesCS4B01G342100 chr4D 495074300 495074993 693 False 429 429 78.308 939 1662 1 chr4D.!!$F1 723
3 TraesCS4B01G342100 chr4D 495520366 495520898 532 False 375 375 79.676 1087 1637 1 chr4D.!!$F3 550
4 TraesCS4B01G342100 chr5A 674937050 674938736 1686 False 2274 2274 91.197 763 2437 1 chr5A.!!$F3 1674
5 TraesCS4B01G342100 chr5A 674852048 674852567 519 False 350 350 79.336 1132 1662 1 chr5A.!!$F1 530
6 TraesCS4B01G342100 chr5A 674893260 674893779 519 False 350 350 79.336 1132 1662 1 chr5A.!!$F2 530
7 TraesCS4B01G342100 chr5A 675319085 675319630 545 True 344 344 78.448 1087 1662 1 chr5A.!!$R1 575
8 TraesCS4B01G342100 chr3D 503747530 503748287 757 True 1190 1190 94.993 4 762 1 chr3D.!!$R1 758
9 TraesCS4B01G342100 chr3D 191496313 191497073 760 False 1134 1134 93.561 1 761 1 chr3D.!!$F2 760
10 TraesCS4B01G342100 chr3D 3156435 3157191 756 False 1044 1044 91.568 1 758 1 chr3D.!!$F1 757
11 TraesCS4B01G342100 chr7D 68912828 68913585 757 False 1164 1164 94.350 1 761 1 chr7D.!!$F1 760
12 TraesCS4B01G342100 chr5D 460225865 460226621 756 True 1144 1144 93.923 4 760 1 chr5D.!!$R1 756
13 TraesCS4B01G342100 chr5D 483565080 483565836 756 True 1083 1083 92.480 4 760 1 chr5D.!!$R2 756
14 TraesCS4B01G342100 chr7B 374311456 374312210 754 True 1085 1085 92.593 6 760 1 chr7B.!!$R1 754
15 TraesCS4B01G342100 chr3A 467875468 467876227 759 True 1072 1072 92.116 1 761 1 chr3A.!!$R1 760
16 TraesCS4B01G342100 chr4A 143443107 143443867 760 False 1040 1040 91.339 1 761 1 chr4A.!!$F1 760
17 TraesCS4B01G342100 chrUn 283623707 283624226 519 False 350 350 79.336 1132 1662 1 chrUn.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 602 0.761187 GCCCAGACTATCAGCATCCA 59.239 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2594 2668 0.035439 ATGATCGGCCGAAAACCACT 60.035 50.0 34.66 14.44 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.887242 GCGATGGCGGCACTATTCA 60.887 57.895 16.34 0.00 38.16 2.57
127 128 1.485066 CCACTATTTGCTACCTCCGGT 59.515 52.381 0.00 0.00 40.16 5.28
161 162 1.604278 CAGTAGATCGGATGACAGCGA 59.396 52.381 0.00 0.00 0.00 4.93
192 193 1.164041 CGTTTCCCTCTTGTGGCGTT 61.164 55.000 0.00 0.00 0.00 4.84
260 261 1.375908 GTGGAGCGGTGCTTCATCA 60.376 57.895 7.84 0.00 46.58 3.07
280 281 3.874543 TCATACACATTAATGGTGGCGTC 59.125 43.478 19.37 0.00 40.54 5.19
334 335 1.296715 GATGTGTGGCGAGGGACTT 59.703 57.895 0.00 0.00 41.55 3.01
336 337 2.358737 GTGTGGCGAGGGACTTGG 60.359 66.667 0.00 0.00 41.55 3.61
345 346 2.610859 GGGACTTGGGCAGGAGGA 60.611 66.667 0.00 0.00 0.00 3.71
494 495 1.170290 TGAGAAGTGCGTCGGACTGA 61.170 55.000 20.64 2.32 0.00 3.41
599 602 0.761187 GCCCAGACTATCAGCATCCA 59.239 55.000 0.00 0.00 0.00 3.41
626 629 1.595466 ACTGGATAGGAGTAGCGACG 58.405 55.000 0.00 0.00 0.00 5.12
650 653 4.716003 GCCTAGACGGTGGCTTTT 57.284 55.556 1.01 0.00 45.26 2.27
807 810 4.757149 GTCCATAGCTTGTTTCAACACTCT 59.243 41.667 0.00 0.00 38.92 3.24
932 938 7.166851 TCTCATTATAAGGTAGTAGGTCGAGG 58.833 42.308 0.00 0.00 0.00 4.63
933 939 6.845908 TCATTATAAGGTAGTAGGTCGAGGT 58.154 40.000 0.00 0.00 0.00 3.85
934 940 7.293073 TCATTATAAGGTAGTAGGTCGAGGTT 58.707 38.462 0.00 0.00 0.00 3.50
935 941 7.781693 TCATTATAAGGTAGTAGGTCGAGGTTT 59.218 37.037 0.00 0.00 0.00 3.27
936 942 7.573968 TTATAAGGTAGTAGGTCGAGGTTTC 57.426 40.000 0.00 0.00 0.00 2.78
1065 1071 0.250209 CTCCTGACACTGCAACAGCT 60.250 55.000 0.00 0.00 34.37 4.24
1259 1285 3.052082 CGGCTGTTCCAGTGCCTG 61.052 66.667 0.00 0.00 44.09 4.85
1278 1304 1.205657 GTTCTGCGACAAGACGTTCA 58.794 50.000 0.00 0.00 35.59 3.18
1377 1403 1.303317 AACAACGACAGCCCATCCC 60.303 57.895 0.00 0.00 0.00 3.85
1576 1608 4.452733 GCTCCAGGACCCGTTCGG 62.453 72.222 4.08 4.08 37.81 4.30
1662 1694 2.363018 TGGAGCTGCGCCTCTAGT 60.363 61.111 22.83 0.00 32.43 2.57
1777 1810 4.226394 TCGTGGGGAGAAGATTTCCATTTA 59.774 41.667 0.00 0.00 36.40 1.40
1878 1911 4.429854 AAGCAAGACTTGAGGAGTTTCT 57.570 40.909 19.51 0.82 39.19 2.52
1882 1915 4.061596 CAAGACTTGAGGAGTTTCTGTCC 58.938 47.826 9.76 0.00 39.19 4.02
1956 1993 6.767902 TGAATAGCTAGTTAATGCAAGGAAGG 59.232 38.462 0.00 0.00 0.00 3.46
1961 1998 3.500343 AGTTAATGCAAGGAAGGCTTGT 58.500 40.909 3.46 0.00 34.55 3.16
2084 2143 7.598869 TGTCTTTCTGTACTGTAATAAGCAGTG 59.401 37.037 8.05 0.00 45.59 3.66
2174 2238 2.341846 TAATGGAAATCAGCGGGTCC 57.658 50.000 0.00 0.00 0.00 4.46
2211 2275 1.339055 GCCAGTGAACTATGGTCTGCA 60.339 52.381 0.00 0.00 38.91 4.41
2232 2296 1.648720 GTGCGTAGTACGGCCGATA 59.351 57.895 35.90 18.45 42.82 2.92
2323 2394 1.514678 GAGGTTGCCACATGCGTGAA 61.515 55.000 14.17 0.00 46.80 3.18
2442 2516 3.767230 CGCAGCGGAGTGTTGACG 61.767 66.667 7.00 0.00 0.00 4.35
2446 2520 3.414700 GCGGAGTGTTGACGCCTG 61.415 66.667 0.00 0.00 46.92 4.85
2447 2521 2.338620 CGGAGTGTTGACGCCTGA 59.661 61.111 0.00 0.00 39.81 3.86
2448 2522 1.079819 CGGAGTGTTGACGCCTGAT 60.080 57.895 0.00 0.00 39.81 2.90
2449 2523 0.670546 CGGAGTGTTGACGCCTGATT 60.671 55.000 0.00 0.00 39.81 2.57
2450 2524 1.523758 GGAGTGTTGACGCCTGATTT 58.476 50.000 0.00 0.00 38.93 2.17
2451 2525 1.880027 GGAGTGTTGACGCCTGATTTT 59.120 47.619 0.00 0.00 38.93 1.82
2452 2526 2.350772 GGAGTGTTGACGCCTGATTTTG 60.351 50.000 0.00 0.00 38.93 2.44
2453 2527 1.608590 AGTGTTGACGCCTGATTTTGG 59.391 47.619 0.00 0.00 0.00 3.28
2454 2528 0.313672 TGTTGACGCCTGATTTTGGC 59.686 50.000 0.00 0.00 46.42 4.52
2463 2537 3.855689 CCTGATTTTGGCAAGGTACAG 57.144 47.619 0.00 8.99 0.00 2.74
2464 2538 3.420893 CCTGATTTTGGCAAGGTACAGA 58.579 45.455 19.33 0.00 0.00 3.41
2465 2539 3.441572 CCTGATTTTGGCAAGGTACAGAG 59.558 47.826 19.33 10.73 0.00 3.35
2466 2540 4.074970 CTGATTTTGGCAAGGTACAGAGT 58.925 43.478 15.36 0.00 0.00 3.24
2467 2541 3.820467 TGATTTTGGCAAGGTACAGAGTG 59.180 43.478 0.00 0.00 0.00 3.51
2468 2542 3.569194 TTTTGGCAAGGTACAGAGTGA 57.431 42.857 0.00 0.00 0.00 3.41
2469 2543 3.569194 TTTGGCAAGGTACAGAGTGAA 57.431 42.857 0.00 0.00 0.00 3.18
2470 2544 3.569194 TTGGCAAGGTACAGAGTGAAA 57.431 42.857 0.00 0.00 0.00 2.69
2471 2545 3.126001 TGGCAAGGTACAGAGTGAAAG 57.874 47.619 0.00 0.00 0.00 2.62
2472 2546 2.224523 TGGCAAGGTACAGAGTGAAAGG 60.225 50.000 0.00 0.00 0.00 3.11
2473 2547 2.427506 GCAAGGTACAGAGTGAAAGGG 58.572 52.381 0.00 0.00 0.00 3.95
2474 2548 2.224548 GCAAGGTACAGAGTGAAAGGGT 60.225 50.000 0.00 0.00 0.00 4.34
2475 2549 3.747708 GCAAGGTACAGAGTGAAAGGGTT 60.748 47.826 0.00 0.00 0.00 4.11
2476 2550 4.461198 CAAGGTACAGAGTGAAAGGGTTT 58.539 43.478 0.00 0.00 0.00 3.27
2477 2551 4.790718 AGGTACAGAGTGAAAGGGTTTT 57.209 40.909 0.00 0.00 0.00 2.43
2478 2552 4.715713 AGGTACAGAGTGAAAGGGTTTTC 58.284 43.478 0.00 0.00 42.45 2.29
2505 2579 5.766150 TGAAAAGTTTCACATCACCGAAT 57.234 34.783 2.32 0.00 41.88 3.34
2506 2580 5.518812 TGAAAAGTTTCACATCACCGAATG 58.481 37.500 2.32 0.00 41.88 2.67
2507 2581 4.503741 AAAGTTTCACATCACCGAATGG 57.496 40.909 0.00 0.00 42.84 3.16
2508 2582 3.417069 AGTTTCACATCACCGAATGGA 57.583 42.857 0.00 0.00 39.21 3.41
2509 2583 3.750371 AGTTTCACATCACCGAATGGAA 58.250 40.909 0.00 0.00 39.21 3.53
2510 2584 3.502211 AGTTTCACATCACCGAATGGAAC 59.498 43.478 0.00 0.00 39.21 3.62
2528 2602 6.783708 TGGAACAACTTTGATGTTTAGGTT 57.216 33.333 0.00 0.00 40.90 3.50
2529 2603 7.883391 TGGAACAACTTTGATGTTTAGGTTA 57.117 32.000 0.00 0.00 40.90 2.85
2530 2604 8.472007 TGGAACAACTTTGATGTTTAGGTTAT 57.528 30.769 0.00 0.00 40.90 1.89
2531 2605 8.573035 TGGAACAACTTTGATGTTTAGGTTATC 58.427 33.333 0.00 0.00 40.90 1.75
2532 2606 8.573035 GGAACAACTTTGATGTTTAGGTTATCA 58.427 33.333 0.00 0.00 40.90 2.15
2535 2609 8.450964 ACAACTTTGATGTTTAGGTTATCATCG 58.549 33.333 0.00 0.00 39.33 3.84
2536 2610 8.450964 CAACTTTGATGTTTAGGTTATCATCGT 58.549 33.333 0.00 0.00 39.33 3.73
2537 2611 8.197988 ACTTTGATGTTTAGGTTATCATCGTC 57.802 34.615 0.00 0.00 39.33 4.20
2538 2612 7.280205 ACTTTGATGTTTAGGTTATCATCGTCC 59.720 37.037 0.00 0.00 39.33 4.79
2539 2613 5.286438 TGATGTTTAGGTTATCATCGTCCG 58.714 41.667 0.00 0.00 39.33 4.79
2540 2614 4.987408 TGTTTAGGTTATCATCGTCCGA 57.013 40.909 0.00 0.00 0.00 4.55
2541 2615 4.675510 TGTTTAGGTTATCATCGTCCGAC 58.324 43.478 0.00 0.00 0.00 4.79
2542 2616 4.400251 TGTTTAGGTTATCATCGTCCGACT 59.600 41.667 0.00 0.00 0.00 4.18
2543 2617 4.825546 TTAGGTTATCATCGTCCGACTC 57.174 45.455 0.00 0.00 0.00 3.36
2544 2618 1.955080 AGGTTATCATCGTCCGACTCC 59.045 52.381 0.00 0.00 0.00 3.85
2545 2619 1.679680 GGTTATCATCGTCCGACTCCA 59.320 52.381 0.00 0.00 0.00 3.86
2546 2620 2.296471 GGTTATCATCGTCCGACTCCAT 59.704 50.000 0.00 0.00 0.00 3.41
2547 2621 3.243771 GGTTATCATCGTCCGACTCCATT 60.244 47.826 0.00 0.00 0.00 3.16
2548 2622 2.802787 ATCATCGTCCGACTCCATTC 57.197 50.000 0.00 0.00 0.00 2.67
2549 2623 1.763968 TCATCGTCCGACTCCATTCT 58.236 50.000 0.00 0.00 0.00 2.40
2550 2624 2.100197 TCATCGTCCGACTCCATTCTT 58.900 47.619 0.00 0.00 0.00 2.52
2551 2625 3.284617 TCATCGTCCGACTCCATTCTTA 58.715 45.455 0.00 0.00 0.00 2.10
2552 2626 3.315470 TCATCGTCCGACTCCATTCTTAG 59.685 47.826 0.00 0.00 0.00 2.18
2553 2627 2.022195 TCGTCCGACTCCATTCTTAGG 58.978 52.381 0.00 0.00 0.00 2.69
2554 2628 1.067212 CGTCCGACTCCATTCTTAGGG 59.933 57.143 0.00 0.00 0.00 3.53
2555 2629 1.413077 GTCCGACTCCATTCTTAGGGG 59.587 57.143 0.00 0.00 0.00 4.79
2556 2630 0.106894 CCGACTCCATTCTTAGGGGC 59.893 60.000 0.00 0.00 0.00 5.80
2557 2631 0.106894 CGACTCCATTCTTAGGGGCC 59.893 60.000 0.00 0.00 0.00 5.80
2558 2632 0.106894 GACTCCATTCTTAGGGGCCG 59.893 60.000 0.00 0.00 0.00 6.13
2559 2633 0.326238 ACTCCATTCTTAGGGGCCGA 60.326 55.000 0.00 0.00 0.00 5.54
2560 2634 0.837272 CTCCATTCTTAGGGGCCGAA 59.163 55.000 0.00 0.00 0.00 4.30
2561 2635 1.211949 CTCCATTCTTAGGGGCCGAAA 59.788 52.381 0.00 0.00 0.00 3.46
2562 2636 1.850345 TCCATTCTTAGGGGCCGAAAT 59.150 47.619 0.00 0.00 0.00 2.17
2563 2637 2.243736 TCCATTCTTAGGGGCCGAAATT 59.756 45.455 0.00 0.00 0.00 1.82
2564 2638 3.460340 TCCATTCTTAGGGGCCGAAATTA 59.540 43.478 0.00 0.00 0.00 1.40
2565 2639 3.568430 CCATTCTTAGGGGCCGAAATTAC 59.432 47.826 0.00 0.00 0.00 1.89
2566 2640 4.204012 CATTCTTAGGGGCCGAAATTACA 58.796 43.478 0.00 0.00 0.00 2.41
2567 2641 4.513406 TTCTTAGGGGCCGAAATTACAT 57.487 40.909 0.00 0.00 0.00 2.29
2568 2642 4.513406 TCTTAGGGGCCGAAATTACATT 57.487 40.909 0.00 0.00 0.00 2.71
2569 2643 4.457466 TCTTAGGGGCCGAAATTACATTC 58.543 43.478 0.00 0.00 0.00 2.67
2570 2644 2.067365 AGGGGCCGAAATTACATTCC 57.933 50.000 0.00 0.00 0.00 3.01
2571 2645 0.666374 GGGGCCGAAATTACATTCCG 59.334 55.000 0.00 0.00 0.00 4.30
2572 2646 1.670791 GGGCCGAAATTACATTCCGA 58.329 50.000 0.00 0.00 0.00 4.55
2573 2647 1.602377 GGGCCGAAATTACATTCCGAG 59.398 52.381 0.00 0.00 0.00 4.63
2574 2648 2.285977 GGCCGAAATTACATTCCGAGT 58.714 47.619 0.00 0.00 0.00 4.18
2575 2649 2.031683 GGCCGAAATTACATTCCGAGTG 59.968 50.000 0.00 0.00 0.00 3.51
2576 2650 2.031683 GCCGAAATTACATTCCGAGTGG 59.968 50.000 0.00 0.00 0.00 4.00
2577 2651 2.031683 CCGAAATTACATTCCGAGTGGC 59.968 50.000 0.00 0.00 34.14 5.01
2578 2652 2.675844 CGAAATTACATTCCGAGTGGCA 59.324 45.455 0.00 0.00 34.14 4.92
2579 2653 3.242413 CGAAATTACATTCCGAGTGGCAG 60.242 47.826 0.00 0.00 34.14 4.85
2580 2654 3.627395 AATTACATTCCGAGTGGCAGA 57.373 42.857 0.00 0.00 34.14 4.26
2581 2655 3.627395 ATTACATTCCGAGTGGCAGAA 57.373 42.857 0.00 0.00 34.14 3.02
2582 2656 3.627395 TTACATTCCGAGTGGCAGAAT 57.373 42.857 0.00 0.00 34.14 2.40
2583 2657 2.496899 ACATTCCGAGTGGCAGAATT 57.503 45.000 0.00 0.00 34.14 2.17
2584 2658 2.359900 ACATTCCGAGTGGCAGAATTC 58.640 47.619 0.00 0.00 34.14 2.17
2585 2659 2.290260 ACATTCCGAGTGGCAGAATTCA 60.290 45.455 8.44 0.00 34.14 2.57
2586 2660 2.559698 TTCCGAGTGGCAGAATTCAA 57.440 45.000 8.44 0.00 34.14 2.69
2587 2661 2.787473 TCCGAGTGGCAGAATTCAAT 57.213 45.000 8.44 0.00 34.14 2.57
2588 2662 3.904800 TCCGAGTGGCAGAATTCAATA 57.095 42.857 8.44 0.00 34.14 1.90
2589 2663 4.422073 TCCGAGTGGCAGAATTCAATAT 57.578 40.909 8.44 0.00 34.14 1.28
2590 2664 4.780815 TCCGAGTGGCAGAATTCAATATT 58.219 39.130 8.44 0.00 34.14 1.28
2591 2665 4.816385 TCCGAGTGGCAGAATTCAATATTC 59.184 41.667 8.44 0.00 34.14 1.75
2592 2666 4.023707 CCGAGTGGCAGAATTCAATATTCC 60.024 45.833 8.44 0.11 0.00 3.01
2593 2667 4.319046 CGAGTGGCAGAATTCAATATTCCG 60.319 45.833 8.44 0.19 0.00 4.30
2594 2668 4.780815 AGTGGCAGAATTCAATATTCCGA 58.219 39.130 8.44 0.00 0.00 4.55
2595 2669 4.818546 AGTGGCAGAATTCAATATTCCGAG 59.181 41.667 8.44 0.00 0.00 4.63
2596 2670 4.576463 GTGGCAGAATTCAATATTCCGAGT 59.424 41.667 8.44 0.00 0.00 4.18
2597 2671 4.576053 TGGCAGAATTCAATATTCCGAGTG 59.424 41.667 8.44 0.00 0.00 3.51
2598 2672 4.023707 GGCAGAATTCAATATTCCGAGTGG 60.024 45.833 8.44 0.00 0.00 4.00
2599 2673 4.576463 GCAGAATTCAATATTCCGAGTGGT 59.424 41.667 8.44 0.00 36.30 4.16
2600 2674 5.066505 GCAGAATTCAATATTCCGAGTGGTT 59.933 40.000 8.44 0.00 36.30 3.67
2601 2675 6.404734 GCAGAATTCAATATTCCGAGTGGTTT 60.405 38.462 8.44 0.00 36.30 3.27
2602 2676 7.538575 CAGAATTCAATATTCCGAGTGGTTTT 58.461 34.615 8.44 0.00 36.30 2.43
2603 2677 7.698130 CAGAATTCAATATTCCGAGTGGTTTTC 59.302 37.037 8.44 0.00 36.30 2.29
2604 2678 5.539582 TTCAATATTCCGAGTGGTTTTCG 57.460 39.130 0.00 0.00 37.78 3.46
2609 2683 2.356553 CGAGTGGTTTTCGGCCGA 60.357 61.111 27.28 27.28 34.56 5.54
2610 2684 1.740296 CGAGTGGTTTTCGGCCGAT 60.740 57.895 31.56 12.62 34.56 4.18
2611 2685 1.693083 CGAGTGGTTTTCGGCCGATC 61.693 60.000 31.56 20.25 34.56 3.69
2612 2686 0.672401 GAGTGGTTTTCGGCCGATCA 60.672 55.000 31.56 21.05 0.00 2.92
2613 2687 0.035439 AGTGGTTTTCGGCCGATCAT 60.035 50.000 31.56 8.19 0.00 2.45
2614 2688 0.098728 GTGGTTTTCGGCCGATCATG 59.901 55.000 31.56 0.00 0.00 3.07
2615 2689 1.064134 GGTTTTCGGCCGATCATGC 59.936 57.895 31.56 16.85 0.00 4.06
2616 2690 1.064134 GTTTTCGGCCGATCATGCC 59.936 57.895 31.56 10.24 45.70 4.40
2621 2695 2.108976 GGCCGATCATGCCTTCGA 59.891 61.111 14.48 0.00 45.70 3.71
2622 2696 1.958205 GGCCGATCATGCCTTCGAG 60.958 63.158 14.48 5.76 45.70 4.04
2623 2697 1.068083 GCCGATCATGCCTTCGAGA 59.932 57.895 12.27 0.00 37.55 4.04
2624 2698 1.218230 GCCGATCATGCCTTCGAGAC 61.218 60.000 12.27 1.37 37.55 3.36
2625 2699 0.936764 CCGATCATGCCTTCGAGACG 60.937 60.000 12.27 0.00 37.55 4.18
2626 2700 0.029433 CGATCATGCCTTCGAGACGA 59.971 55.000 6.68 0.00 37.55 4.20
2627 2701 1.482278 GATCATGCCTTCGAGACGAC 58.518 55.000 0.00 0.00 34.89 4.34
2628 2702 0.103208 ATCATGCCTTCGAGACGACC 59.897 55.000 0.00 0.00 34.89 4.79
2629 2703 0.965866 TCATGCCTTCGAGACGACCT 60.966 55.000 0.00 0.00 34.89 3.85
2630 2704 0.526524 CATGCCTTCGAGACGACCTC 60.527 60.000 0.00 0.00 34.89 3.85
2638 2712 3.928343 GAGACGACCTCGGATGAAG 57.072 57.895 0.00 0.00 44.95 3.02
2639 2713 0.382515 GAGACGACCTCGGATGAAGG 59.617 60.000 0.00 0.00 44.95 3.46
2640 2714 0.034380 AGACGACCTCGGATGAAGGA 60.034 55.000 0.00 0.00 44.95 3.36
2641 2715 0.382515 GACGACCTCGGATGAAGGAG 59.617 60.000 0.00 0.00 44.95 3.69
2642 2716 0.323542 ACGACCTCGGATGAAGGAGT 60.324 55.000 0.00 0.00 44.95 3.85
2643 2717 1.064906 ACGACCTCGGATGAAGGAGTA 60.065 52.381 0.00 0.00 44.95 2.59
2644 2718 1.334243 CGACCTCGGATGAAGGAGTAC 59.666 57.143 0.00 0.00 35.37 2.73
2645 2719 2.657143 GACCTCGGATGAAGGAGTACT 58.343 52.381 0.00 0.00 0.00 2.73
2646 2720 2.619646 GACCTCGGATGAAGGAGTACTC 59.380 54.545 14.87 14.87 0.00 2.59
2647 2721 2.242708 ACCTCGGATGAAGGAGTACTCT 59.757 50.000 21.88 3.41 0.00 3.24
2648 2722 3.458857 ACCTCGGATGAAGGAGTACTCTA 59.541 47.826 21.88 7.37 0.00 2.43
2649 2723 4.079901 ACCTCGGATGAAGGAGTACTCTAA 60.080 45.833 21.88 6.35 0.00 2.10
2650 2724 4.888239 CCTCGGATGAAGGAGTACTCTAAA 59.112 45.833 21.88 6.69 0.00 1.85
2651 2725 5.009210 CCTCGGATGAAGGAGTACTCTAAAG 59.991 48.000 21.88 6.61 0.00 1.85
2652 2726 4.888239 TCGGATGAAGGAGTACTCTAAAGG 59.112 45.833 21.88 5.35 0.00 3.11
2653 2727 4.888239 CGGATGAAGGAGTACTCTAAAGGA 59.112 45.833 21.88 3.02 0.00 3.36
2654 2728 5.360144 CGGATGAAGGAGTACTCTAAAGGAA 59.640 44.000 21.88 3.20 0.00 3.36
2655 2729 6.041069 CGGATGAAGGAGTACTCTAAAGGAAT 59.959 42.308 21.88 7.54 0.00 3.01
2656 2730 7.418025 CGGATGAAGGAGTACTCTAAAGGAATT 60.418 40.741 21.88 5.17 0.00 2.17
2657 2731 7.713073 GGATGAAGGAGTACTCTAAAGGAATTG 59.287 40.741 21.88 0.00 0.00 2.32
2658 2732 7.554959 TGAAGGAGTACTCTAAAGGAATTGT 57.445 36.000 21.88 0.00 0.00 2.71
2659 2733 7.612677 TGAAGGAGTACTCTAAAGGAATTGTC 58.387 38.462 21.88 1.15 0.00 3.18
2660 2734 7.455008 TGAAGGAGTACTCTAAAGGAATTGTCT 59.545 37.037 21.88 3.48 0.00 3.41
2661 2735 7.800300 AGGAGTACTCTAAAGGAATTGTCTT 57.200 36.000 21.88 0.00 0.00 3.01
2662 2736 8.208575 AGGAGTACTCTAAAGGAATTGTCTTT 57.791 34.615 21.88 8.04 38.00 2.52
2663 2737 8.097662 AGGAGTACTCTAAAGGAATTGTCTTTG 58.902 37.037 21.88 4.81 36.12 2.77
2664 2738 7.878644 GGAGTACTCTAAAGGAATTGTCTTTGT 59.121 37.037 21.88 5.95 36.12 2.83
2665 2739 8.834749 AGTACTCTAAAGGAATTGTCTTTGTC 57.165 34.615 11.52 0.00 36.12 3.18
2666 2740 8.652290 AGTACTCTAAAGGAATTGTCTTTGTCT 58.348 33.333 11.52 2.58 36.12 3.41
2667 2741 7.971183 ACTCTAAAGGAATTGTCTTTGTCTC 57.029 36.000 11.52 0.00 36.12 3.36
2668 2742 6.647067 ACTCTAAAGGAATTGTCTTTGTCTCG 59.353 38.462 11.52 0.00 36.12 4.04
2669 2743 6.522054 TCTAAAGGAATTGTCTTTGTCTCGT 58.478 36.000 11.52 0.00 36.12 4.18
2670 2744 5.674933 AAAGGAATTGTCTTTGTCTCGTC 57.325 39.130 3.42 0.00 33.68 4.20
2671 2745 3.318017 AGGAATTGTCTTTGTCTCGTCG 58.682 45.455 0.00 0.00 0.00 5.12
2672 2746 3.005472 AGGAATTGTCTTTGTCTCGTCGA 59.995 43.478 0.00 0.00 0.00 4.20
2673 2747 3.739300 GGAATTGTCTTTGTCTCGTCGAA 59.261 43.478 0.00 0.00 0.00 3.71
2674 2748 4.143305 GGAATTGTCTTTGTCTCGTCGAAG 60.143 45.833 0.00 0.00 0.00 3.79
2675 2749 1.767289 TGTCTTTGTCTCGTCGAAGC 58.233 50.000 0.00 0.00 0.00 3.86
2676 2750 1.066454 TGTCTTTGTCTCGTCGAAGCA 59.934 47.619 0.00 0.00 0.00 3.91
2677 2751 2.124903 GTCTTTGTCTCGTCGAAGCAA 58.875 47.619 0.00 1.79 0.00 3.91
2678 2752 2.731976 GTCTTTGTCTCGTCGAAGCAAT 59.268 45.455 10.60 0.00 0.00 3.56
2679 2753 2.987149 TCTTTGTCTCGTCGAAGCAATC 59.013 45.455 10.60 0.00 0.00 2.67
2680 2754 2.432206 TTGTCTCGTCGAAGCAATCA 57.568 45.000 0.00 0.00 0.00 2.57
2681 2755 2.432206 TGTCTCGTCGAAGCAATCAA 57.568 45.000 0.00 0.00 0.00 2.57
2682 2756 2.959516 TGTCTCGTCGAAGCAATCAAT 58.040 42.857 0.00 0.00 0.00 2.57
2683 2757 3.325870 TGTCTCGTCGAAGCAATCAATT 58.674 40.909 0.00 0.00 0.00 2.32
2684 2758 3.745975 TGTCTCGTCGAAGCAATCAATTT 59.254 39.130 0.00 0.00 0.00 1.82
2685 2759 4.213270 TGTCTCGTCGAAGCAATCAATTTT 59.787 37.500 0.00 0.00 0.00 1.82
2686 2760 4.551126 GTCTCGTCGAAGCAATCAATTTTG 59.449 41.667 0.00 0.00 0.00 2.44
2687 2761 4.450757 TCTCGTCGAAGCAATCAATTTTGA 59.549 37.500 0.00 0.00 42.14 2.69
2689 2763 6.312672 TCTCGTCGAAGCAATCAATTTTGATA 59.687 34.615 6.24 0.00 46.60 2.15
2690 2764 7.011389 TCTCGTCGAAGCAATCAATTTTGATAT 59.989 33.333 6.24 0.00 46.60 1.63
2691 2765 8.137210 TCGTCGAAGCAATCAATTTTGATATA 57.863 30.769 6.24 0.00 46.60 0.86
2692 2766 8.773645 TCGTCGAAGCAATCAATTTTGATATAT 58.226 29.630 6.24 0.00 46.60 0.86
2715 2789 9.784531 ATATAAATCATCTCAATCCGAGTTTGT 57.215 29.630 0.00 0.00 42.88 2.83
2717 2791 9.784531 ATAAATCATCTCAATCCGAGTTTGTAT 57.215 29.630 0.00 0.00 42.88 2.29
2718 2792 7.488187 AATCATCTCAATCCGAGTTTGTATG 57.512 36.000 0.00 0.00 42.88 2.39
2719 2793 4.811024 TCATCTCAATCCGAGTTTGTATGC 59.189 41.667 0.00 0.00 42.88 3.14
2720 2794 4.200838 TCTCAATCCGAGTTTGTATGCA 57.799 40.909 0.00 0.00 42.88 3.96
2721 2795 4.574892 TCTCAATCCGAGTTTGTATGCAA 58.425 39.130 0.00 0.00 42.88 4.08
2722 2796 5.000591 TCTCAATCCGAGTTTGTATGCAAA 58.999 37.500 4.71 4.71 42.88 3.68
2723 2797 5.471797 TCTCAATCCGAGTTTGTATGCAAAA 59.528 36.000 10.72 0.00 45.01 2.44
2724 2798 5.698832 TCAATCCGAGTTTGTATGCAAAAG 58.301 37.500 10.72 5.75 45.01 2.27
2725 2799 5.240623 TCAATCCGAGTTTGTATGCAAAAGT 59.759 36.000 10.72 1.43 45.01 2.66
2726 2800 5.705609 ATCCGAGTTTGTATGCAAAAGTT 57.294 34.783 10.72 0.10 45.01 2.66
2727 2801 6.811253 ATCCGAGTTTGTATGCAAAAGTTA 57.189 33.333 10.72 0.00 45.01 2.24
2728 2802 5.992729 TCCGAGTTTGTATGCAAAAGTTAC 58.007 37.500 10.72 0.00 45.01 2.50
2729 2803 5.527951 TCCGAGTTTGTATGCAAAAGTTACA 59.472 36.000 10.72 0.00 45.01 2.41
2730 2804 6.038382 TCCGAGTTTGTATGCAAAAGTTACAA 59.962 34.615 10.72 5.87 45.01 2.41
2731 2805 6.861055 CCGAGTTTGTATGCAAAAGTTACAAT 59.139 34.615 10.72 0.00 45.01 2.71
2732 2806 7.060633 CCGAGTTTGTATGCAAAAGTTACAATC 59.939 37.037 10.72 9.39 45.01 2.67
2733 2807 7.589587 CGAGTTTGTATGCAAAAGTTACAATCA 59.410 33.333 10.72 1.27 45.01 2.57
2734 2808 9.243637 GAGTTTGTATGCAAAAGTTACAATCAA 57.756 29.630 10.72 0.73 45.01 2.57
2735 2809 9.762933 AGTTTGTATGCAAAAGTTACAATCAAT 57.237 25.926 10.72 0.83 45.01 2.57
2743 2817 9.237187 TGCAAAAGTTACAATCAATATAGACCA 57.763 29.630 0.00 0.00 0.00 4.02
2744 2818 9.722056 GCAAAAGTTACAATCAATATAGACCAG 57.278 33.333 0.00 0.00 0.00 4.00
2745 2819 9.722056 CAAAAGTTACAATCAATATAGACCAGC 57.278 33.333 0.00 0.00 0.00 4.85
2746 2820 8.451908 AAAGTTACAATCAATATAGACCAGCC 57.548 34.615 0.00 0.00 0.00 4.85
2747 2821 6.534634 AGTTACAATCAATATAGACCAGCCC 58.465 40.000 0.00 0.00 0.00 5.19
2748 2822 6.330250 AGTTACAATCAATATAGACCAGCCCT 59.670 38.462 0.00 0.00 0.00 5.19
2749 2823 7.512746 AGTTACAATCAATATAGACCAGCCCTA 59.487 37.037 0.00 0.00 0.00 3.53
2750 2824 6.115448 ACAATCAATATAGACCAGCCCTAC 57.885 41.667 0.00 0.00 0.00 3.18
2751 2825 5.013183 ACAATCAATATAGACCAGCCCTACC 59.987 44.000 0.00 0.00 0.00 3.18
2752 2826 4.207698 TCAATATAGACCAGCCCTACCA 57.792 45.455 0.00 0.00 0.00 3.25
2753 2827 4.562767 TCAATATAGACCAGCCCTACCAA 58.437 43.478 0.00 0.00 0.00 3.67
2754 2828 4.972568 TCAATATAGACCAGCCCTACCAAA 59.027 41.667 0.00 0.00 0.00 3.28
2755 2829 5.071788 TCAATATAGACCAGCCCTACCAAAG 59.928 44.000 0.00 0.00 0.00 2.77
2756 2830 2.634639 TAGACCAGCCCTACCAAAGA 57.365 50.000 0.00 0.00 0.00 2.52
2757 2831 0.984995 AGACCAGCCCTACCAAAGAC 59.015 55.000 0.00 0.00 0.00 3.01
2758 2832 0.035343 GACCAGCCCTACCAAAGACC 60.035 60.000 0.00 0.00 0.00 3.85
2759 2833 0.770557 ACCAGCCCTACCAAAGACCA 60.771 55.000 0.00 0.00 0.00 4.02
2760 2834 0.404040 CCAGCCCTACCAAAGACCAA 59.596 55.000 0.00 0.00 0.00 3.67
2761 2835 1.203001 CCAGCCCTACCAAAGACCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2762 2836 2.593026 CAGCCCTACCAAAGACCAAAA 58.407 47.619 0.00 0.00 0.00 2.44
2763 2837 3.165071 CAGCCCTACCAAAGACCAAAAT 58.835 45.455 0.00 0.00 0.00 1.82
2764 2838 4.340617 CAGCCCTACCAAAGACCAAAATA 58.659 43.478 0.00 0.00 0.00 1.40
2765 2839 4.956075 CAGCCCTACCAAAGACCAAAATAT 59.044 41.667 0.00 0.00 0.00 1.28
2766 2840 5.422012 CAGCCCTACCAAAGACCAAAATATT 59.578 40.000 0.00 0.00 0.00 1.28
2767 2841 6.605594 CAGCCCTACCAAAGACCAAAATATTA 59.394 38.462 0.00 0.00 0.00 0.98
2768 2842 6.605995 AGCCCTACCAAAGACCAAAATATTAC 59.394 38.462 0.00 0.00 0.00 1.89
2769 2843 6.459161 GCCCTACCAAAGACCAAAATATTACG 60.459 42.308 0.00 0.00 0.00 3.18
2770 2844 6.459161 CCCTACCAAAGACCAAAATATTACGC 60.459 42.308 0.00 0.00 0.00 4.42
2771 2845 6.317893 CCTACCAAAGACCAAAATATTACGCT 59.682 38.462 0.00 0.00 0.00 5.07
2772 2846 6.190954 ACCAAAGACCAAAATATTACGCTC 57.809 37.500 0.00 0.00 0.00 5.03
2773 2847 5.163794 ACCAAAGACCAAAATATTACGCTCG 60.164 40.000 0.00 0.00 0.00 5.03
2774 2848 5.064198 CCAAAGACCAAAATATTACGCTCGA 59.936 40.000 0.00 0.00 0.00 4.04
2775 2849 5.713822 AAGACCAAAATATTACGCTCGAC 57.286 39.130 0.00 0.00 0.00 4.20
2776 2850 4.751060 AGACCAAAATATTACGCTCGACA 58.249 39.130 0.00 0.00 0.00 4.35
2777 2851 4.565564 AGACCAAAATATTACGCTCGACAC 59.434 41.667 0.00 0.00 0.00 3.67
2778 2852 3.619929 ACCAAAATATTACGCTCGACACC 59.380 43.478 0.00 0.00 0.00 4.16
2779 2853 3.619483 CCAAAATATTACGCTCGACACCA 59.381 43.478 0.00 0.00 0.00 4.17
2780 2854 4.260212 CCAAAATATTACGCTCGACACCAG 60.260 45.833 0.00 0.00 0.00 4.00
2781 2855 4.380841 AAATATTACGCTCGACACCAGA 57.619 40.909 0.00 0.00 0.00 3.86
2782 2856 2.838386 TATTACGCTCGACACCAGAC 57.162 50.000 0.00 0.00 0.00 3.51
2783 2857 0.885879 ATTACGCTCGACACCAGACA 59.114 50.000 0.00 0.00 0.00 3.41
2784 2858 0.039798 TTACGCTCGACACCAGACAC 60.040 55.000 0.00 0.00 0.00 3.67
2785 2859 1.167781 TACGCTCGACACCAGACACA 61.168 55.000 0.00 0.00 0.00 3.72
2786 2860 1.080501 CGCTCGACACCAGACACAT 60.081 57.895 0.00 0.00 0.00 3.21
2787 2861 1.347097 CGCTCGACACCAGACACATG 61.347 60.000 0.00 0.00 0.00 3.21
2788 2862 0.319900 GCTCGACACCAGACACATGT 60.320 55.000 0.00 0.00 0.00 3.21
2789 2863 1.873903 GCTCGACACCAGACACATGTT 60.874 52.381 0.00 0.00 0.00 2.71
2790 2864 2.609491 GCTCGACACCAGACACATGTTA 60.609 50.000 0.00 0.00 0.00 2.41
2791 2865 3.649073 CTCGACACCAGACACATGTTAA 58.351 45.455 0.00 0.00 0.00 2.01
2792 2866 4.245660 CTCGACACCAGACACATGTTAAT 58.754 43.478 0.00 0.00 0.00 1.40
2793 2867 5.394224 TCGACACCAGACACATGTTAATA 57.606 39.130 0.00 0.00 0.00 0.98
2794 2868 5.785243 TCGACACCAGACACATGTTAATAA 58.215 37.500 0.00 0.00 0.00 1.40
2795 2869 5.867174 TCGACACCAGACACATGTTAATAAG 59.133 40.000 0.00 0.00 0.00 1.73
2796 2870 5.637810 CGACACCAGACACATGTTAATAAGT 59.362 40.000 0.00 0.00 0.00 2.24
2797 2871 6.401047 CGACACCAGACACATGTTAATAAGTG 60.401 42.308 6.09 6.09 37.95 3.16
2798 2872 6.296026 ACACCAGACACATGTTAATAAGTGT 58.704 36.000 12.22 12.22 46.85 3.55
2823 2897 2.900122 ACAATGCGTGAGAAATTCGG 57.100 45.000 0.00 0.00 0.00 4.30
2824 2898 1.135689 ACAATGCGTGAGAAATTCGGC 60.136 47.619 0.00 0.00 0.00 5.54
2825 2899 0.451783 AATGCGTGAGAAATTCGGCC 59.548 50.000 0.00 0.00 0.00 6.13
2826 2900 0.392998 ATGCGTGAGAAATTCGGCCT 60.393 50.000 0.00 0.00 0.00 5.19
2827 2901 0.605319 TGCGTGAGAAATTCGGCCTT 60.605 50.000 0.00 0.00 0.00 4.35
2828 2902 0.097150 GCGTGAGAAATTCGGCCTTC 59.903 55.000 0.00 0.00 0.00 3.46
2829 2903 1.726853 CGTGAGAAATTCGGCCTTCT 58.273 50.000 4.72 4.72 34.58 2.85
2830 2904 1.394917 CGTGAGAAATTCGGCCTTCTG 59.605 52.381 9.56 0.00 32.01 3.02
2831 2905 1.740025 GTGAGAAATTCGGCCTTCTGG 59.260 52.381 9.56 0.00 32.01 3.86
2832 2906 1.628340 TGAGAAATTCGGCCTTCTGGA 59.372 47.619 9.56 0.00 32.01 3.86
2833 2907 2.239654 TGAGAAATTCGGCCTTCTGGAT 59.760 45.455 9.56 0.00 32.01 3.41
2834 2908 2.615912 GAGAAATTCGGCCTTCTGGATG 59.384 50.000 9.56 0.00 32.01 3.51
2835 2909 1.678101 GAAATTCGGCCTTCTGGATGG 59.322 52.381 0.00 0.00 34.57 3.51
2840 2914 3.930504 GCCTTCTGGATGGCCTTG 58.069 61.111 14.24 0.00 43.54 3.61
2841 2915 1.755783 GCCTTCTGGATGGCCTTGG 60.756 63.158 14.24 0.00 43.54 3.61
2842 2916 2.001803 CCTTCTGGATGGCCTTGGA 58.998 57.895 3.32 0.00 34.57 3.53
2843 2917 0.554792 CCTTCTGGATGGCCTTGGAT 59.445 55.000 3.32 0.00 34.57 3.41
2844 2918 1.688772 CTTCTGGATGGCCTTGGATG 58.311 55.000 3.32 0.00 34.31 3.51
2845 2919 0.259647 TTCTGGATGGCCTTGGATGG 59.740 55.000 3.32 0.00 34.31 3.51
2846 2920 0.624206 TCTGGATGGCCTTGGATGGA 60.624 55.000 3.32 0.00 34.31 3.41
2847 2921 0.259647 CTGGATGGCCTTGGATGGAA 59.740 55.000 3.32 0.00 34.31 3.53
2848 2922 0.709397 TGGATGGCCTTGGATGGAAA 59.291 50.000 3.32 0.00 34.31 3.13
2849 2923 1.078490 TGGATGGCCTTGGATGGAAAA 59.922 47.619 3.32 0.00 34.31 2.29
2850 2924 2.187100 GGATGGCCTTGGATGGAAAAA 58.813 47.619 3.32 0.00 0.00 1.94
2851 2925 2.093500 GGATGGCCTTGGATGGAAAAAC 60.093 50.000 3.32 0.00 0.00 2.43
2852 2926 2.397044 TGGCCTTGGATGGAAAAACT 57.603 45.000 3.32 0.00 0.00 2.66
2853 2927 2.688477 TGGCCTTGGATGGAAAAACTT 58.312 42.857 3.32 0.00 0.00 2.66
2854 2928 3.044894 TGGCCTTGGATGGAAAAACTTT 58.955 40.909 3.32 0.00 0.00 2.66
2855 2929 3.070878 TGGCCTTGGATGGAAAAACTTTC 59.929 43.478 3.32 0.00 0.00 2.62
2856 2930 3.070878 GGCCTTGGATGGAAAAACTTTCA 59.929 43.478 0.00 0.00 0.00 2.69
2857 2931 4.444164 GGCCTTGGATGGAAAAACTTTCAA 60.444 41.667 0.00 0.00 0.00 2.69
2858 2932 4.511454 GCCTTGGATGGAAAAACTTTCAAC 59.489 41.667 1.88 0.00 0.00 3.18
2859 2933 5.669477 CCTTGGATGGAAAAACTTTCAACA 58.331 37.500 1.88 0.00 0.00 3.33
2860 2934 6.290605 CCTTGGATGGAAAAACTTTCAACAT 58.709 36.000 1.88 0.00 0.00 2.71
2861 2935 6.203338 CCTTGGATGGAAAAACTTTCAACATG 59.797 38.462 0.00 0.00 0.00 3.21
2862 2936 6.477053 TGGATGGAAAAACTTTCAACATGA 57.523 33.333 0.00 0.00 0.00 3.07
2863 2937 6.882656 TGGATGGAAAAACTTTCAACATGAA 58.117 32.000 0.00 0.00 34.03 2.57
2864 2938 7.334090 TGGATGGAAAAACTTTCAACATGAAA 58.666 30.769 0.00 5.50 43.37 2.69
2865 2939 7.826252 TGGATGGAAAAACTTTCAACATGAAAA 59.174 29.630 0.00 0.00 44.69 2.29
2866 2940 8.672815 GGATGGAAAAACTTTCAACATGAAAAA 58.327 29.630 0.00 0.00 44.69 1.94
2867 2941 9.706846 GATGGAAAAACTTTCAACATGAAAAAG 57.293 29.630 0.00 8.51 44.69 2.27
2868 2942 8.614469 TGGAAAAACTTTCAACATGAAAAAGT 57.386 26.923 14.66 14.66 44.69 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.561569 CTTCAACAAGGGAACGACACT 58.438 47.619 0.00 0.00 0.00 3.55
127 128 4.827835 CGATCTACTGATCTAGGGTTTCCA 59.172 45.833 0.00 0.00 45.10 3.53
161 162 4.906618 AGAGGGAAACGACACAATAATGT 58.093 39.130 0.00 0.00 41.61 2.71
192 193 3.340034 CCCGTGCACACCTTTAAGAATA 58.660 45.455 18.64 0.00 0.00 1.75
260 261 4.127171 GAGACGCCACCATTAATGTGTAT 58.873 43.478 14.25 0.00 0.00 2.29
296 297 2.597805 ACGCCGAGTCTCCACTGT 60.598 61.111 0.00 0.00 30.63 3.55
334 335 1.918293 AACGTCATCCTCCTGCCCA 60.918 57.895 0.00 0.00 0.00 5.36
336 337 0.741221 GACAACGTCATCCTCCTGCC 60.741 60.000 0.00 0.00 32.09 4.85
599 602 5.279206 CGCTACTCCTATCCAGTTGATGAAT 60.279 44.000 0.00 0.00 34.76 2.57
626 629 0.462047 CCACCGTCTAGGCAACATCC 60.462 60.000 0.00 0.00 46.52 3.51
650 653 9.256477 CTTACAAAGTGATACAACAGTAAGACA 57.744 33.333 0.00 0.00 39.45 3.41
761 764 2.224066 CGCCCGACCTTAGAATGAGATT 60.224 50.000 0.00 0.00 0.00 2.40
775 778 2.017559 AAGCTATGGACTCGCCCGAC 62.018 60.000 0.00 0.00 34.97 4.79
779 782 1.666189 GAAACAAGCTATGGACTCGCC 59.334 52.381 0.00 0.00 37.10 5.54
780 783 2.346803 TGAAACAAGCTATGGACTCGC 58.653 47.619 0.00 0.00 0.00 5.03
932 938 4.451096 TGAAACAAGCTATGGACTCGAAAC 59.549 41.667 0.00 0.00 0.00 2.78
933 939 4.451096 GTGAAACAAGCTATGGACTCGAAA 59.549 41.667 0.00 0.00 36.32 3.46
934 940 3.994392 GTGAAACAAGCTATGGACTCGAA 59.006 43.478 0.00 0.00 36.32 3.71
935 941 3.585862 GTGAAACAAGCTATGGACTCGA 58.414 45.455 0.00 0.00 36.32 4.04
936 942 3.999229 GTGAAACAAGCTATGGACTCG 57.001 47.619 0.00 0.00 36.32 4.18
1065 1071 1.071987 CAGTTGAGCTCAGGTGGCA 59.928 57.895 17.43 0.00 0.00 4.92
1068 1074 2.037772 AGGTAACAGTTGAGCTCAGGTG 59.962 50.000 17.43 19.21 41.41 4.00
1259 1285 1.205657 TGAACGTCTTGTCGCAGAAC 58.794 50.000 0.00 0.00 39.69 3.01
1496 1528 2.818714 CTCTCAGGCTTGCAGGCG 60.819 66.667 15.24 1.75 46.58 5.52
1662 1694 1.539712 CGCAATATGAGAGCAGCCTGA 60.540 52.381 0.00 0.00 0.00 3.86
1800 1833 6.091437 CGTAAGAAATCTGAGTCTAAACCGT 58.909 40.000 0.00 0.00 43.02 4.83
1847 1880 8.723942 TCCTCAAGTCTTGCTTTAATTATCTC 57.276 34.615 7.78 0.00 34.69 2.75
1848 1881 8.325046 ACTCCTCAAGTCTTGCTTTAATTATCT 58.675 33.333 7.78 0.00 34.69 1.98
1849 1882 8.499403 ACTCCTCAAGTCTTGCTTTAATTATC 57.501 34.615 7.78 0.00 34.69 1.75
1850 1883 8.870075 AACTCCTCAAGTCTTGCTTTAATTAT 57.130 30.769 7.78 0.00 37.17 1.28
1878 1911 0.391661 GCATCTTCAGCTTCCGGACA 60.392 55.000 1.83 0.00 0.00 4.02
1882 1915 2.299993 TACAGCATCTTCAGCTTCCG 57.700 50.000 0.00 0.00 41.14 4.30
1956 1993 2.432628 CGTCCGGACTCCACAAGC 60.433 66.667 30.92 2.76 0.00 4.01
1961 1998 2.599281 TTCAGCGTCCGGACTCCA 60.599 61.111 30.92 11.24 0.00 3.86
2006 2065 6.760770 TCCGAATTCTTTTTCAGTTTGCAATT 59.239 30.769 0.00 0.00 0.00 2.32
2084 2143 5.391312 ACCAACAAAAGCAGTATTCATCC 57.609 39.130 0.00 0.00 0.00 3.51
2100 2159 4.669206 TTAGTAGTGGAAACGACCAACA 57.331 40.909 0.00 0.00 41.87 3.33
2101 2160 6.549912 AAATTAGTAGTGGAAACGACCAAC 57.450 37.500 0.00 0.00 41.87 3.77
2138 2201 3.130340 CCATTAACAAGCGCCATAACCTT 59.870 43.478 2.29 0.00 0.00 3.50
2174 2238 4.000988 ACTGGCAAAATTAGTAGTCCACG 58.999 43.478 0.00 0.00 0.00 4.94
2211 2275 2.410469 GGCCGTACTACGCACGAT 59.590 61.111 2.87 0.00 41.91 3.73
2232 2296 3.629398 CAGAGAGTTTGCTTGTTTGGTCT 59.371 43.478 0.00 0.00 0.00 3.85
2267 2331 5.979517 GCTGAAACATGAAACTACTTTTGCT 59.020 36.000 0.00 0.00 0.00 3.91
2323 2394 0.603975 GAGAACGACTGGCCAGCTTT 60.604 55.000 33.06 22.80 0.00 3.51
2443 2517 3.420893 TCTGTACCTTGCCAAAATCAGG 58.579 45.455 0.00 0.00 0.00 3.86
2444 2518 4.074970 ACTCTGTACCTTGCCAAAATCAG 58.925 43.478 0.00 0.00 0.00 2.90
2445 2519 3.820467 CACTCTGTACCTTGCCAAAATCA 59.180 43.478 0.00 0.00 0.00 2.57
2446 2520 4.072131 TCACTCTGTACCTTGCCAAAATC 58.928 43.478 0.00 0.00 0.00 2.17
2447 2521 4.098914 TCACTCTGTACCTTGCCAAAAT 57.901 40.909 0.00 0.00 0.00 1.82
2448 2522 3.569194 TCACTCTGTACCTTGCCAAAA 57.431 42.857 0.00 0.00 0.00 2.44
2449 2523 3.569194 TTCACTCTGTACCTTGCCAAA 57.431 42.857 0.00 0.00 0.00 3.28
2450 2524 3.476552 CTTTCACTCTGTACCTTGCCAA 58.523 45.455 0.00 0.00 0.00 4.52
2451 2525 2.224523 CCTTTCACTCTGTACCTTGCCA 60.225 50.000 0.00 0.00 0.00 4.92
2452 2526 2.427506 CCTTTCACTCTGTACCTTGCC 58.572 52.381 0.00 0.00 0.00 4.52
2453 2527 2.224548 ACCCTTTCACTCTGTACCTTGC 60.225 50.000 0.00 0.00 0.00 4.01
2454 2528 3.771577 ACCCTTTCACTCTGTACCTTG 57.228 47.619 0.00 0.00 0.00 3.61
2455 2529 4.790718 AAACCCTTTCACTCTGTACCTT 57.209 40.909 0.00 0.00 0.00 3.50
2456 2530 4.165372 TGAAAACCCTTTCACTCTGTACCT 59.835 41.667 0.00 0.00 44.76 3.08
2457 2531 4.457466 TGAAAACCCTTTCACTCTGTACC 58.543 43.478 0.00 0.00 44.76 3.34
2458 2532 4.023963 GCTGAAAACCCTTTCACTCTGTAC 60.024 45.833 0.00 0.00 44.76 2.90
2459 2533 4.134563 GCTGAAAACCCTTTCACTCTGTA 58.865 43.478 0.00 0.00 44.76 2.74
2460 2534 2.952310 GCTGAAAACCCTTTCACTCTGT 59.048 45.455 0.00 0.00 44.76 3.41
2461 2535 2.951642 TGCTGAAAACCCTTTCACTCTG 59.048 45.455 0.00 0.00 44.76 3.35
2462 2536 3.297134 TGCTGAAAACCCTTTCACTCT 57.703 42.857 0.00 0.00 44.76 3.24
2463 2537 3.569701 TCATGCTGAAAACCCTTTCACTC 59.430 43.478 0.00 0.00 44.76 3.51
2464 2538 3.565307 TCATGCTGAAAACCCTTTCACT 58.435 40.909 0.00 0.00 44.76 3.41
2465 2539 4.320608 TTCATGCTGAAAACCCTTTCAC 57.679 40.909 0.00 0.00 44.76 3.18
2470 2544 9.414163 TGTGAAACTTTTCATGCTGAAAACCCT 62.414 37.037 15.57 6.86 46.86 4.34
2471 2545 7.344222 TGTGAAACTTTTCATGCTGAAAACCC 61.344 38.462 15.57 8.76 46.86 4.11
2472 2546 5.580297 TGTGAAACTTTTCATGCTGAAAACC 59.420 36.000 15.57 8.98 46.86 3.27
2473 2547 6.645700 TGTGAAACTTTTCATGCTGAAAAC 57.354 33.333 15.57 9.37 46.86 2.43
2483 2557 5.507149 CCATTCGGTGATGTGAAACTTTTCA 60.507 40.000 0.07 0.07 44.31 2.69
2484 2558 4.917415 CCATTCGGTGATGTGAAACTTTTC 59.083 41.667 0.00 0.00 38.04 2.29
2485 2559 4.582656 TCCATTCGGTGATGTGAAACTTTT 59.417 37.500 0.00 0.00 38.04 2.27
2486 2560 4.141287 TCCATTCGGTGATGTGAAACTTT 58.859 39.130 0.00 0.00 38.04 2.66
2487 2561 3.750371 TCCATTCGGTGATGTGAAACTT 58.250 40.909 0.00 0.00 38.04 2.66
2488 2562 3.417069 TCCATTCGGTGATGTGAAACT 57.583 42.857 0.00 0.00 38.04 2.66
2489 2563 3.252215 TGTTCCATTCGGTGATGTGAAAC 59.748 43.478 0.00 0.00 37.35 2.78
2490 2564 3.481453 TGTTCCATTCGGTGATGTGAAA 58.519 40.909 0.00 0.00 0.00 2.69
2491 2565 3.133141 TGTTCCATTCGGTGATGTGAA 57.867 42.857 0.00 0.00 0.00 3.18
2492 2566 2.811431 GTTGTTCCATTCGGTGATGTGA 59.189 45.455 0.00 0.00 0.00 3.58
2493 2567 2.813754 AGTTGTTCCATTCGGTGATGTG 59.186 45.455 0.00 0.00 0.00 3.21
2494 2568 3.140325 AGTTGTTCCATTCGGTGATGT 57.860 42.857 0.00 0.00 0.00 3.06
2495 2569 4.023279 TCAAAGTTGTTCCATTCGGTGATG 60.023 41.667 0.00 0.00 0.00 3.07
2496 2570 4.141287 TCAAAGTTGTTCCATTCGGTGAT 58.859 39.130 0.00 0.00 0.00 3.06
2497 2571 3.546724 TCAAAGTTGTTCCATTCGGTGA 58.453 40.909 0.00 0.00 0.00 4.02
2498 2572 3.980646 TCAAAGTTGTTCCATTCGGTG 57.019 42.857 0.00 0.00 0.00 4.94
2499 2573 3.888930 ACATCAAAGTTGTTCCATTCGGT 59.111 39.130 0.00 0.00 0.00 4.69
2500 2574 4.503741 ACATCAAAGTTGTTCCATTCGG 57.496 40.909 0.00 0.00 0.00 4.30
2501 2575 6.582295 CCTAAACATCAAAGTTGTTCCATTCG 59.418 38.462 0.00 0.00 36.32 3.34
2502 2576 7.433680 ACCTAAACATCAAAGTTGTTCCATTC 58.566 34.615 0.00 0.00 36.32 2.67
2503 2577 7.360113 ACCTAAACATCAAAGTTGTTCCATT 57.640 32.000 0.00 0.00 36.32 3.16
2504 2578 6.976934 ACCTAAACATCAAAGTTGTTCCAT 57.023 33.333 0.00 0.00 36.32 3.41
2505 2579 6.783708 AACCTAAACATCAAAGTTGTTCCA 57.216 33.333 0.00 0.00 36.32 3.53
2506 2580 8.573035 TGATAACCTAAACATCAAAGTTGTTCC 58.427 33.333 0.00 0.00 36.32 3.62
2509 2583 8.450964 CGATGATAACCTAAACATCAAAGTTGT 58.549 33.333 0.00 0.00 38.99 3.32
2510 2584 8.450964 ACGATGATAACCTAAACATCAAAGTTG 58.549 33.333 0.00 0.00 38.99 3.16
2511 2585 8.561738 ACGATGATAACCTAAACATCAAAGTT 57.438 30.769 0.00 0.00 38.99 2.66
2512 2586 7.280205 GGACGATGATAACCTAAACATCAAAGT 59.720 37.037 0.00 0.00 38.99 2.66
2513 2587 7.516785 CGGACGATGATAACCTAAACATCAAAG 60.517 40.741 0.00 0.00 38.99 2.77
2514 2588 6.256975 CGGACGATGATAACCTAAACATCAAA 59.743 38.462 0.00 0.00 38.99 2.69
2515 2589 5.751509 CGGACGATGATAACCTAAACATCAA 59.248 40.000 0.00 0.00 38.99 2.57
2516 2590 5.068067 TCGGACGATGATAACCTAAACATCA 59.932 40.000 0.00 0.00 38.99 3.07
2517 2591 5.401674 GTCGGACGATGATAACCTAAACATC 59.598 44.000 0.00 0.00 36.70 3.06
2518 2592 5.068723 AGTCGGACGATGATAACCTAAACAT 59.931 40.000 1.89 0.00 0.00 2.71
2519 2593 4.400251 AGTCGGACGATGATAACCTAAACA 59.600 41.667 1.89 0.00 0.00 2.83
2520 2594 4.929781 AGTCGGACGATGATAACCTAAAC 58.070 43.478 1.89 0.00 0.00 2.01
2521 2595 4.037208 GGAGTCGGACGATGATAACCTAAA 59.963 45.833 1.89 0.00 0.00 1.85
2522 2596 3.567164 GGAGTCGGACGATGATAACCTAA 59.433 47.826 1.89 0.00 0.00 2.69
2523 2597 3.144506 GGAGTCGGACGATGATAACCTA 58.855 50.000 1.89 0.00 0.00 3.08
2524 2598 1.955080 GGAGTCGGACGATGATAACCT 59.045 52.381 1.89 0.00 0.00 3.50
2525 2599 1.679680 TGGAGTCGGACGATGATAACC 59.320 52.381 1.89 0.00 0.00 2.85
2526 2600 3.644884 ATGGAGTCGGACGATGATAAC 57.355 47.619 1.89 0.00 0.00 1.89
2527 2601 3.889538 AGAATGGAGTCGGACGATGATAA 59.110 43.478 1.89 0.00 0.00 1.75
2528 2602 3.487372 AGAATGGAGTCGGACGATGATA 58.513 45.455 1.89 0.00 0.00 2.15
2529 2603 2.311463 AGAATGGAGTCGGACGATGAT 58.689 47.619 1.89 0.00 0.00 2.45
2530 2604 1.763968 AGAATGGAGTCGGACGATGA 58.236 50.000 1.89 0.00 0.00 2.92
2531 2605 2.586258 AAGAATGGAGTCGGACGATG 57.414 50.000 1.89 0.00 0.00 3.84
2532 2606 2.623889 CCTAAGAATGGAGTCGGACGAT 59.376 50.000 1.89 0.00 0.00 3.73
2533 2607 2.022195 CCTAAGAATGGAGTCGGACGA 58.978 52.381 1.89 0.00 0.00 4.20
2534 2608 1.067212 CCCTAAGAATGGAGTCGGACG 59.933 57.143 1.89 0.00 0.00 4.79
2535 2609 1.413077 CCCCTAAGAATGGAGTCGGAC 59.587 57.143 0.00 0.00 0.00 4.79
2536 2610 1.789523 CCCCTAAGAATGGAGTCGGA 58.210 55.000 0.00 0.00 0.00 4.55
2537 2611 0.106894 GCCCCTAAGAATGGAGTCGG 59.893 60.000 0.00 0.00 0.00 4.79
2538 2612 0.106894 GGCCCCTAAGAATGGAGTCG 59.893 60.000 0.00 0.00 0.00 4.18
2539 2613 0.106894 CGGCCCCTAAGAATGGAGTC 59.893 60.000 0.00 0.00 0.00 3.36
2540 2614 0.326238 TCGGCCCCTAAGAATGGAGT 60.326 55.000 0.00 0.00 0.00 3.85
2541 2615 0.837272 TTCGGCCCCTAAGAATGGAG 59.163 55.000 0.00 0.00 0.00 3.86
2542 2616 1.291109 TTTCGGCCCCTAAGAATGGA 58.709 50.000 0.00 0.00 0.00 3.41
2543 2617 2.364972 ATTTCGGCCCCTAAGAATGG 57.635 50.000 0.00 0.00 0.00 3.16
2544 2618 4.204012 TGTAATTTCGGCCCCTAAGAATG 58.796 43.478 0.00 0.00 0.00 2.67
2545 2619 4.513406 TGTAATTTCGGCCCCTAAGAAT 57.487 40.909 0.00 0.00 0.00 2.40
2546 2620 4.513406 ATGTAATTTCGGCCCCTAAGAA 57.487 40.909 0.00 0.00 0.00 2.52
2547 2621 4.457466 GAATGTAATTTCGGCCCCTAAGA 58.543 43.478 0.00 0.00 36.07 2.10
2548 2622 3.568430 GGAATGTAATTTCGGCCCCTAAG 59.432 47.826 0.00 0.00 36.07 2.18
2549 2623 3.558033 GGAATGTAATTTCGGCCCCTAA 58.442 45.455 0.00 0.00 36.07 2.69
2550 2624 3.217681 GGAATGTAATTTCGGCCCCTA 57.782 47.619 0.00 0.00 36.07 3.53
2551 2625 2.067365 GGAATGTAATTTCGGCCCCT 57.933 50.000 0.00 0.00 36.07 4.79
2558 2632 3.938963 TCTGCCACTCGGAATGTAATTTC 59.061 43.478 0.00 0.00 36.07 2.17
2559 2633 3.950397 TCTGCCACTCGGAATGTAATTT 58.050 40.909 0.00 0.00 36.07 1.82
2560 2634 3.627395 TCTGCCACTCGGAATGTAATT 57.373 42.857 0.00 0.00 40.93 1.40
2561 2635 3.627395 TTCTGCCACTCGGAATGTAAT 57.373 42.857 0.00 0.00 35.24 1.89
2562 2636 3.627395 ATTCTGCCACTCGGAATGTAA 57.373 42.857 0.00 0.00 46.29 2.41
2567 2641 2.559698 TTGAATTCTGCCACTCGGAA 57.440 45.000 7.05 0.00 43.67 4.30
2568 2642 2.787473 ATTGAATTCTGCCACTCGGA 57.213 45.000 7.05 0.00 0.00 4.55
2569 2643 4.023707 GGAATATTGAATTCTGCCACTCGG 60.024 45.833 7.05 0.00 0.00 4.63
2570 2644 4.319046 CGGAATATTGAATTCTGCCACTCG 60.319 45.833 7.05 0.59 0.00 4.18
2571 2645 4.816385 TCGGAATATTGAATTCTGCCACTC 59.184 41.667 7.05 0.00 35.08 3.51
2572 2646 4.780815 TCGGAATATTGAATTCTGCCACT 58.219 39.130 7.05 0.00 35.08 4.00
2573 2647 4.576463 ACTCGGAATATTGAATTCTGCCAC 59.424 41.667 7.05 0.00 35.08 5.01
2574 2648 4.576053 CACTCGGAATATTGAATTCTGCCA 59.424 41.667 7.05 0.00 35.08 4.92
2575 2649 4.023707 CCACTCGGAATATTGAATTCTGCC 60.024 45.833 7.05 0.00 35.08 4.85
2576 2650 4.576463 ACCACTCGGAATATTGAATTCTGC 59.424 41.667 7.05 0.00 35.08 4.26
2577 2651 6.683974 AACCACTCGGAATATTGAATTCTG 57.316 37.500 7.05 0.96 36.11 3.02
2578 2652 7.414098 CGAAAACCACTCGGAATATTGAATTCT 60.414 37.037 7.05 0.00 35.59 2.40
2579 2653 6.687105 CGAAAACCACTCGGAATATTGAATTC 59.313 38.462 0.00 0.00 35.59 2.17
2580 2654 6.551736 CGAAAACCACTCGGAATATTGAATT 58.448 36.000 0.00 0.00 35.59 2.17
2581 2655 6.119144 CGAAAACCACTCGGAATATTGAAT 57.881 37.500 0.00 0.00 35.59 2.57
2582 2656 5.539582 CGAAAACCACTCGGAATATTGAA 57.460 39.130 0.00 0.00 35.59 2.69
2592 2666 1.693083 GATCGGCCGAAAACCACTCG 61.693 60.000 34.66 0.00 36.06 4.18
2593 2667 0.672401 TGATCGGCCGAAAACCACTC 60.672 55.000 34.66 23.07 0.00 3.51
2594 2668 0.035439 ATGATCGGCCGAAAACCACT 60.035 50.000 34.66 14.44 0.00 4.00
2595 2669 0.098728 CATGATCGGCCGAAAACCAC 59.901 55.000 34.66 18.41 0.00 4.16
2596 2670 1.653094 GCATGATCGGCCGAAAACCA 61.653 55.000 34.66 25.63 0.00 3.67
2597 2671 1.064134 GCATGATCGGCCGAAAACC 59.936 57.895 34.66 20.95 0.00 3.27
2598 2672 1.064134 GGCATGATCGGCCGAAAAC 59.936 57.895 34.66 25.05 42.39 2.43
2599 2673 3.508474 GGCATGATCGGCCGAAAA 58.492 55.556 34.66 23.63 42.39 2.29
2605 2679 1.068083 TCTCGAAGGCATGATCGGC 59.932 57.895 13.61 0.77 39.45 5.54
2606 2680 0.936764 CGTCTCGAAGGCATGATCGG 60.937 60.000 13.61 6.97 39.45 4.18
2607 2681 0.029433 TCGTCTCGAAGGCATGATCG 59.971 55.000 0.00 3.06 40.31 3.69
2608 2682 1.482278 GTCGTCTCGAAGGCATGATC 58.518 55.000 0.00 0.00 37.72 2.92
2609 2683 0.103208 GGTCGTCTCGAAGGCATGAT 59.897 55.000 0.00 0.00 37.72 2.45
2610 2684 0.965866 AGGTCGTCTCGAAGGCATGA 60.966 55.000 0.00 0.00 37.72 3.07
2611 2685 0.526524 GAGGTCGTCTCGAAGGCATG 60.527 60.000 0.00 0.00 37.72 4.06
2612 2686 1.810532 GAGGTCGTCTCGAAGGCAT 59.189 57.895 0.00 0.00 37.72 4.40
2613 2687 3.275088 GAGGTCGTCTCGAAGGCA 58.725 61.111 0.00 0.00 37.72 4.75
2620 2694 0.382515 CCTTCATCCGAGGTCGTCTC 59.617 60.000 0.00 0.00 39.10 3.36
2621 2695 0.034380 TCCTTCATCCGAGGTCGTCT 60.034 55.000 0.00 0.00 37.74 4.18
2622 2696 0.382515 CTCCTTCATCCGAGGTCGTC 59.617 60.000 0.00 0.00 37.74 4.20
2623 2697 0.323542 ACTCCTTCATCCGAGGTCGT 60.324 55.000 0.00 0.00 37.74 4.34
2624 2698 1.334243 GTACTCCTTCATCCGAGGTCG 59.666 57.143 0.00 0.00 35.71 4.79
2625 2699 2.619646 GAGTACTCCTTCATCCGAGGTC 59.380 54.545 12.13 0.00 35.71 3.85
2626 2700 2.242708 AGAGTACTCCTTCATCCGAGGT 59.757 50.000 19.38 0.00 35.71 3.85
2627 2701 2.938838 AGAGTACTCCTTCATCCGAGG 58.061 52.381 19.38 0.00 35.53 4.63
2628 2702 5.009210 CCTTTAGAGTACTCCTTCATCCGAG 59.991 48.000 19.38 5.05 0.00 4.63
2629 2703 4.888239 CCTTTAGAGTACTCCTTCATCCGA 59.112 45.833 19.38 0.00 0.00 4.55
2630 2704 4.888239 TCCTTTAGAGTACTCCTTCATCCG 59.112 45.833 19.38 0.45 0.00 4.18
2631 2705 6.793505 TTCCTTTAGAGTACTCCTTCATCC 57.206 41.667 19.38 0.00 0.00 3.51
2632 2706 8.261522 ACAATTCCTTTAGAGTACTCCTTCATC 58.738 37.037 19.38 0.00 0.00 2.92
2633 2707 8.152023 ACAATTCCTTTAGAGTACTCCTTCAT 57.848 34.615 19.38 3.00 0.00 2.57
2634 2708 7.455008 AGACAATTCCTTTAGAGTACTCCTTCA 59.545 37.037 19.38 0.00 0.00 3.02
2635 2709 7.842982 AGACAATTCCTTTAGAGTACTCCTTC 58.157 38.462 19.38 0.00 0.00 3.46
2636 2710 7.800300 AGACAATTCCTTTAGAGTACTCCTT 57.200 36.000 19.38 4.54 0.00 3.36
2637 2711 7.800300 AAGACAATTCCTTTAGAGTACTCCT 57.200 36.000 19.38 9.34 0.00 3.69
2638 2712 7.878644 ACAAAGACAATTCCTTTAGAGTACTCC 59.121 37.037 19.38 1.81 33.03 3.85
2639 2713 8.834749 ACAAAGACAATTCCTTTAGAGTACTC 57.165 34.615 15.41 15.41 33.03 2.59
2640 2714 8.652290 AGACAAAGACAATTCCTTTAGAGTACT 58.348 33.333 0.00 0.00 33.03 2.73
2641 2715 8.834749 AGACAAAGACAATTCCTTTAGAGTAC 57.165 34.615 2.96 0.00 33.03 2.73
2642 2716 7.813148 CGAGACAAAGACAATTCCTTTAGAGTA 59.187 37.037 2.96 0.00 33.03 2.59
2643 2717 6.647067 CGAGACAAAGACAATTCCTTTAGAGT 59.353 38.462 2.96 0.00 33.03 3.24
2644 2718 6.647067 ACGAGACAAAGACAATTCCTTTAGAG 59.353 38.462 0.00 0.00 33.03 2.43
2645 2719 6.522054 ACGAGACAAAGACAATTCCTTTAGA 58.478 36.000 0.00 0.00 33.03 2.10
2646 2720 6.400091 CGACGAGACAAAGACAATTCCTTTAG 60.400 42.308 0.00 2.08 33.03 1.85
2647 2721 5.404366 CGACGAGACAAAGACAATTCCTTTA 59.596 40.000 0.00 0.00 33.03 1.85
2648 2722 4.211374 CGACGAGACAAAGACAATTCCTTT 59.789 41.667 0.00 0.00 34.46 3.11
2649 2723 3.741344 CGACGAGACAAAGACAATTCCTT 59.259 43.478 0.00 0.00 0.00 3.36
2650 2724 3.005472 TCGACGAGACAAAGACAATTCCT 59.995 43.478 0.00 0.00 0.00 3.36
2651 2725 3.314553 TCGACGAGACAAAGACAATTCC 58.685 45.455 0.00 0.00 0.00 3.01
2652 2726 4.664389 GCTTCGACGAGACAAAGACAATTC 60.664 45.833 0.00 0.00 0.00 2.17
2653 2727 3.184581 GCTTCGACGAGACAAAGACAATT 59.815 43.478 0.00 0.00 0.00 2.32
2654 2728 2.731976 GCTTCGACGAGACAAAGACAAT 59.268 45.455 0.00 0.00 0.00 2.71
2655 2729 2.124903 GCTTCGACGAGACAAAGACAA 58.875 47.619 0.00 0.00 0.00 3.18
2656 2730 1.066454 TGCTTCGACGAGACAAAGACA 59.934 47.619 0.00 0.00 0.00 3.41
2657 2731 1.767289 TGCTTCGACGAGACAAAGAC 58.233 50.000 0.00 0.00 0.00 3.01
2658 2732 2.502213 TTGCTTCGACGAGACAAAGA 57.498 45.000 10.96 0.00 0.00 2.52
2659 2733 2.731451 TGATTGCTTCGACGAGACAAAG 59.269 45.455 15.65 4.28 0.00 2.77
2660 2734 2.749776 TGATTGCTTCGACGAGACAAA 58.250 42.857 15.65 3.52 0.00 2.83
2661 2735 2.432206 TGATTGCTTCGACGAGACAA 57.568 45.000 14.49 14.49 0.00 3.18
2662 2736 2.432206 TTGATTGCTTCGACGAGACA 57.568 45.000 0.00 0.00 0.00 3.41
2663 2737 3.999229 AATTGATTGCTTCGACGAGAC 57.001 42.857 0.00 0.00 0.00 3.36
2664 2738 4.450757 TCAAAATTGATTGCTTCGACGAGA 59.549 37.500 0.00 0.00 31.01 4.04
2665 2739 4.711721 TCAAAATTGATTGCTTCGACGAG 58.288 39.130 0.00 0.00 31.01 4.18
2666 2740 4.740741 TCAAAATTGATTGCTTCGACGA 57.259 36.364 0.00 0.00 31.01 4.20
2667 2741 8.939586 ATATATCAAAATTGATTGCTTCGACG 57.060 30.769 13.40 0.00 45.13 5.12
2701 2775 5.240623 ACTTTTGCATACAAACTCGGATTGA 59.759 36.000 0.00 0.00 45.29 2.57
2702 2776 5.460646 ACTTTTGCATACAAACTCGGATTG 58.539 37.500 0.00 0.00 45.29 2.67
2703 2777 5.705609 ACTTTTGCATACAAACTCGGATT 57.294 34.783 0.00 0.00 45.29 3.01
2704 2778 5.705609 AACTTTTGCATACAAACTCGGAT 57.294 34.783 0.00 0.00 45.29 4.18
2705 2779 5.527951 TGTAACTTTTGCATACAAACTCGGA 59.472 36.000 0.00 0.00 45.29 4.55
2706 2780 5.753744 TGTAACTTTTGCATACAAACTCGG 58.246 37.500 0.00 0.00 45.29 4.63
2707 2781 7.589587 TGATTGTAACTTTTGCATACAAACTCG 59.410 33.333 12.47 0.00 45.29 4.18
2708 2782 8.795786 TGATTGTAACTTTTGCATACAAACTC 57.204 30.769 12.47 8.24 45.29 3.01
2709 2783 9.762933 ATTGATTGTAACTTTTGCATACAAACT 57.237 25.926 12.47 0.00 45.29 2.66
2717 2791 9.237187 TGGTCTATATTGATTGTAACTTTTGCA 57.763 29.630 0.00 0.00 0.00 4.08
2718 2792 9.722056 CTGGTCTATATTGATTGTAACTTTTGC 57.278 33.333 0.00 0.00 0.00 3.68
2719 2793 9.722056 GCTGGTCTATATTGATTGTAACTTTTG 57.278 33.333 0.00 0.00 0.00 2.44
2720 2794 8.903820 GGCTGGTCTATATTGATTGTAACTTTT 58.096 33.333 0.00 0.00 0.00 2.27
2721 2795 7.502561 GGGCTGGTCTATATTGATTGTAACTTT 59.497 37.037 0.00 0.00 0.00 2.66
2722 2796 6.998673 GGGCTGGTCTATATTGATTGTAACTT 59.001 38.462 0.00 0.00 0.00 2.66
2723 2797 6.330250 AGGGCTGGTCTATATTGATTGTAACT 59.670 38.462 0.00 0.00 0.00 2.24
2724 2798 6.534634 AGGGCTGGTCTATATTGATTGTAAC 58.465 40.000 0.00 0.00 0.00 2.50
2725 2799 6.763715 AGGGCTGGTCTATATTGATTGTAA 57.236 37.500 0.00 0.00 0.00 2.41
2726 2800 6.212791 GGTAGGGCTGGTCTATATTGATTGTA 59.787 42.308 0.00 0.00 0.00 2.41
2727 2801 5.013183 GGTAGGGCTGGTCTATATTGATTGT 59.987 44.000 0.00 0.00 0.00 2.71
2728 2802 5.013079 TGGTAGGGCTGGTCTATATTGATTG 59.987 44.000 0.00 0.00 0.00 2.67
2729 2803 5.162637 TGGTAGGGCTGGTCTATATTGATT 58.837 41.667 0.00 0.00 0.00 2.57
2730 2804 4.763355 TGGTAGGGCTGGTCTATATTGAT 58.237 43.478 0.00 0.00 0.00 2.57
2731 2805 4.207698 TGGTAGGGCTGGTCTATATTGA 57.792 45.455 0.00 0.00 0.00 2.57
2732 2806 4.974645 TTGGTAGGGCTGGTCTATATTG 57.025 45.455 0.00 0.00 0.00 1.90
2733 2807 5.071923 GTCTTTGGTAGGGCTGGTCTATATT 59.928 44.000 0.00 0.00 0.00 1.28
2734 2808 4.593634 GTCTTTGGTAGGGCTGGTCTATAT 59.406 45.833 0.00 0.00 0.00 0.86
2735 2809 3.965347 GTCTTTGGTAGGGCTGGTCTATA 59.035 47.826 0.00 0.00 0.00 1.31
2736 2810 2.772515 GTCTTTGGTAGGGCTGGTCTAT 59.227 50.000 0.00 0.00 0.00 1.98
2737 2811 2.185387 GTCTTTGGTAGGGCTGGTCTA 58.815 52.381 0.00 0.00 0.00 2.59
2738 2812 0.984995 GTCTTTGGTAGGGCTGGTCT 59.015 55.000 0.00 0.00 0.00 3.85
2739 2813 0.035343 GGTCTTTGGTAGGGCTGGTC 60.035 60.000 0.00 0.00 0.00 4.02
2740 2814 0.770557 TGGTCTTTGGTAGGGCTGGT 60.771 55.000 0.00 0.00 0.00 4.00
2741 2815 0.404040 TTGGTCTTTGGTAGGGCTGG 59.596 55.000 0.00 0.00 0.00 4.85
2742 2816 2.286365 TTTGGTCTTTGGTAGGGCTG 57.714 50.000 0.00 0.00 0.00 4.85
2743 2817 3.542969 ATTTTGGTCTTTGGTAGGGCT 57.457 42.857 0.00 0.00 0.00 5.19
2744 2818 5.932619 AATATTTTGGTCTTTGGTAGGGC 57.067 39.130 0.00 0.00 0.00 5.19
2745 2819 6.459161 GCGTAATATTTTGGTCTTTGGTAGGG 60.459 42.308 0.00 0.00 0.00 3.53
2746 2820 6.317893 AGCGTAATATTTTGGTCTTTGGTAGG 59.682 38.462 0.00 0.00 0.00 3.18
2747 2821 7.316544 AGCGTAATATTTTGGTCTTTGGTAG 57.683 36.000 0.00 0.00 0.00 3.18
2748 2822 6.036300 CGAGCGTAATATTTTGGTCTTTGGTA 59.964 38.462 13.52 0.00 0.00 3.25
2749 2823 5.163794 CGAGCGTAATATTTTGGTCTTTGGT 60.164 40.000 13.52 0.00 0.00 3.67
2750 2824 5.064198 TCGAGCGTAATATTTTGGTCTTTGG 59.936 40.000 13.52 3.03 0.00 3.28
2751 2825 5.957796 GTCGAGCGTAATATTTTGGTCTTTG 59.042 40.000 13.52 3.28 0.00 2.77
2752 2826 5.640357 TGTCGAGCGTAATATTTTGGTCTTT 59.360 36.000 13.52 0.00 0.00 2.52
2753 2827 5.063060 GTGTCGAGCGTAATATTTTGGTCTT 59.937 40.000 13.52 0.00 0.00 3.01
2754 2828 4.565564 GTGTCGAGCGTAATATTTTGGTCT 59.434 41.667 13.52 0.00 0.00 3.85
2755 2829 4.260091 GGTGTCGAGCGTAATATTTTGGTC 60.260 45.833 0.00 1.22 0.00 4.02
2756 2830 3.619929 GGTGTCGAGCGTAATATTTTGGT 59.380 43.478 0.00 0.00 0.00 3.67
2757 2831 3.619483 TGGTGTCGAGCGTAATATTTTGG 59.381 43.478 0.00 0.00 0.00 3.28
2758 2832 4.565166 TCTGGTGTCGAGCGTAATATTTTG 59.435 41.667 0.00 0.00 0.00 2.44
2759 2833 4.565564 GTCTGGTGTCGAGCGTAATATTTT 59.434 41.667 0.00 0.00 0.00 1.82
2760 2834 4.110482 GTCTGGTGTCGAGCGTAATATTT 58.890 43.478 0.00 0.00 0.00 1.40
2761 2835 3.129813 TGTCTGGTGTCGAGCGTAATATT 59.870 43.478 0.00 0.00 0.00 1.28
2762 2836 2.686405 TGTCTGGTGTCGAGCGTAATAT 59.314 45.455 0.00 0.00 0.00 1.28
2763 2837 2.086094 TGTCTGGTGTCGAGCGTAATA 58.914 47.619 0.00 0.00 0.00 0.98
2764 2838 0.885879 TGTCTGGTGTCGAGCGTAAT 59.114 50.000 0.00 0.00 0.00 1.89
2765 2839 0.039798 GTGTCTGGTGTCGAGCGTAA 60.040 55.000 0.00 0.00 0.00 3.18
2766 2840 1.167781 TGTGTCTGGTGTCGAGCGTA 61.168 55.000 0.00 0.00 0.00 4.42
2767 2841 1.806461 ATGTGTCTGGTGTCGAGCGT 61.806 55.000 0.00 0.00 0.00 5.07
2768 2842 1.080501 ATGTGTCTGGTGTCGAGCG 60.081 57.895 0.00 0.00 0.00 5.03
2769 2843 0.319900 ACATGTGTCTGGTGTCGAGC 60.320 55.000 0.00 0.00 0.00 5.03
2770 2844 2.154854 AACATGTGTCTGGTGTCGAG 57.845 50.000 0.00 0.00 0.00 4.04
2771 2845 3.737032 TTAACATGTGTCTGGTGTCGA 57.263 42.857 0.00 0.00 0.00 4.20
2772 2846 5.637810 ACTTATTAACATGTGTCTGGTGTCG 59.362 40.000 0.00 0.00 0.00 4.35
2773 2847 6.426937 ACACTTATTAACATGTGTCTGGTGTC 59.573 38.462 0.00 0.00 39.09 3.67
2774 2848 6.296026 ACACTTATTAACATGTGTCTGGTGT 58.704 36.000 0.00 8.35 39.09 4.16
2775 2849 6.801539 ACACTTATTAACATGTGTCTGGTG 57.198 37.500 0.00 7.72 39.09 4.17
2781 2855 7.421530 GTGTCAGACACTTATTAACATGTGT 57.578 36.000 24.23 5.19 45.27 3.72
2804 2878 1.135689 GCCGAATTTCTCACGCATTGT 60.136 47.619 0.00 0.00 0.00 2.71
2805 2879 1.538276 GCCGAATTTCTCACGCATTG 58.462 50.000 0.00 0.00 0.00 2.82
2806 2880 0.451783 GGCCGAATTTCTCACGCATT 59.548 50.000 0.00 0.00 0.00 3.56
2807 2881 0.392998 AGGCCGAATTTCTCACGCAT 60.393 50.000 0.00 0.00 0.00 4.73
2808 2882 0.605319 AAGGCCGAATTTCTCACGCA 60.605 50.000 0.00 0.00 0.00 5.24
2809 2883 0.097150 GAAGGCCGAATTTCTCACGC 59.903 55.000 0.00 0.00 0.00 5.34
2810 2884 1.394917 CAGAAGGCCGAATTTCTCACG 59.605 52.381 2.07 0.00 31.53 4.35
2811 2885 1.740025 CCAGAAGGCCGAATTTCTCAC 59.260 52.381 2.07 0.00 31.53 3.51
2812 2886 1.628340 TCCAGAAGGCCGAATTTCTCA 59.372 47.619 2.07 0.00 31.53 3.27
2813 2887 2.403252 TCCAGAAGGCCGAATTTCTC 57.597 50.000 2.07 0.00 31.53 2.87
2814 2888 2.648059 CATCCAGAAGGCCGAATTTCT 58.352 47.619 0.00 0.00 34.09 2.52
2815 2889 1.678101 CCATCCAGAAGGCCGAATTTC 59.322 52.381 0.00 0.00 33.74 2.17
2816 2890 1.767759 CCATCCAGAAGGCCGAATTT 58.232 50.000 0.00 0.00 33.74 1.82
2817 2891 0.753111 GCCATCCAGAAGGCCGAATT 60.753 55.000 2.43 0.00 45.18 2.17
2818 2892 1.152881 GCCATCCAGAAGGCCGAAT 60.153 57.895 2.43 0.00 45.18 3.34
2819 2893 2.272146 GCCATCCAGAAGGCCGAA 59.728 61.111 2.43 0.00 45.18 4.30
2824 2898 0.554792 ATCCAAGGCCATCCAGAAGG 59.445 55.000 5.01 0.00 33.74 3.46
2825 2899 1.688772 CATCCAAGGCCATCCAGAAG 58.311 55.000 5.01 0.00 33.74 2.85
2826 2900 0.259647 CCATCCAAGGCCATCCAGAA 59.740 55.000 5.01 0.00 33.74 3.02
2827 2901 0.624206 TCCATCCAAGGCCATCCAGA 60.624 55.000 5.01 0.00 33.74 3.86
2828 2902 0.259647 TTCCATCCAAGGCCATCCAG 59.740 55.000 5.01 0.00 33.74 3.86
2829 2903 0.709397 TTTCCATCCAAGGCCATCCA 59.291 50.000 5.01 0.00 33.74 3.41
2830 2904 1.864669 TTTTCCATCCAAGGCCATCC 58.135 50.000 5.01 0.00 0.00 3.51
2831 2905 2.833943 AGTTTTTCCATCCAAGGCCATC 59.166 45.455 5.01 0.00 0.00 3.51
2832 2906 2.906568 AGTTTTTCCATCCAAGGCCAT 58.093 42.857 5.01 0.00 0.00 4.40
2833 2907 2.397044 AGTTTTTCCATCCAAGGCCA 57.603 45.000 5.01 0.00 0.00 5.36
2834 2908 3.070878 TGAAAGTTTTTCCATCCAAGGCC 59.929 43.478 0.00 0.00 0.00 5.19
2835 2909 4.335400 TGAAAGTTTTTCCATCCAAGGC 57.665 40.909 0.00 0.00 0.00 4.35
2836 2910 5.669477 TGTTGAAAGTTTTTCCATCCAAGG 58.331 37.500 0.00 0.00 0.00 3.61
2837 2911 6.985645 TCATGTTGAAAGTTTTTCCATCCAAG 59.014 34.615 0.00 0.00 0.00 3.61
2838 2912 6.882656 TCATGTTGAAAGTTTTTCCATCCAA 58.117 32.000 0.00 0.00 0.00 3.53
2839 2913 6.477053 TCATGTTGAAAGTTTTTCCATCCA 57.523 33.333 0.00 0.00 0.00 3.41
2840 2914 7.784633 TTTCATGTTGAAAGTTTTTCCATCC 57.215 32.000 0.00 0.00 41.02 3.51
2841 2915 9.706846 CTTTTTCATGTTGAAAGTTTTTCCATC 57.293 29.630 3.22 0.00 45.77 3.51
2842 2916 9.230122 ACTTTTTCATGTTGAAAGTTTTTCCAT 57.770 25.926 13.94 0.00 45.77 3.41
2843 2917 8.614469 ACTTTTTCATGTTGAAAGTTTTTCCA 57.386 26.923 13.94 0.00 45.77 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.