Multiple sequence alignment - TraesCS4B01G342000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G342000 chr4B 100.000 3602 0 0 1 3602 634980205 634983806 0.000000e+00 6652.0
1 TraesCS4B01G342000 chr4B 93.324 2771 105 22 1 2727 634461898 634459164 0.000000e+00 4019.0
2 TraesCS4B01G342000 chr4B 76.046 1315 275 34 1266 2566 635867951 635869239 0.000000e+00 647.0
3 TraesCS4B01G342000 chr4B 75.436 1319 264 48 1281 2578 634765091 634766370 1.440000e-163 586.0
4 TraesCS4B01G342000 chr4B 75.380 1316 267 45 1281 2578 634727479 634726203 1.860000e-162 582.0
5 TraesCS4B01G342000 chr4B 89.858 424 13 5 2780 3179 634459170 634458753 5.330000e-143 518.0
6 TraesCS4B01G342000 chr4B 95.062 81 3 1 3327 3406 618698970 618699050 3.780000e-25 126.0
7 TraesCS4B01G342000 chr4B 89.855 69 1 4 3227 3293 634458747 634458683 2.300000e-12 84.2
8 TraesCS4B01G342000 chr4D 91.193 2691 135 38 547 3186 494876692 494879331 0.000000e+00 3563.0
9 TraesCS4B01G342000 chr4D 76.328 1318 266 33 1266 2566 495979081 495980369 0.000000e+00 664.0
10 TraesCS4B01G342000 chr4D 75.583 1286 261 39 1281 2547 494850794 494852045 1.440000e-163 586.0
11 TraesCS4B01G342000 chr4D 88.718 390 28 9 6 387 494875533 494875914 2.530000e-126 462.0
12 TraesCS4B01G342000 chr4D 91.589 107 8 1 390 496 494876059 494876164 2.900000e-31 147.0
13 TraesCS4B01G342000 chr5A 90.643 2597 132 59 527 3070 674575716 674578254 0.000000e+00 3347.0
14 TraesCS4B01G342000 chr5A 75.718 1289 251 48 1281 2547 674371644 674372892 1.110000e-164 590.0
15 TraesCS4B01G342000 chr5A 91.525 177 15 0 5 181 674575426 674575602 9.990000e-61 244.0
16 TraesCS4B01G342000 chr5A 95.000 80 3 1 3330 3408 422060213 422060292 1.360000e-24 124.0
17 TraesCS4B01G342000 chr5A 93.902 82 4 1 3327 3407 440943769 440943850 4.880000e-24 122.0
18 TraesCS4B01G342000 chr5A 97.872 47 1 0 450 496 674575604 674575650 8.290000e-12 82.4
19 TraesCS4B01G342000 chr7D 85.195 1540 201 12 1061 2594 61235340 61236858 0.000000e+00 1555.0
20 TraesCS4B01G342000 chr7A 85.010 1521 201 12 1061 2575 65163544 65165043 0.000000e+00 1520.0
21 TraesCS4B01G342000 chr2A 83.510 1510 210 23 1071 2574 1776744 1778220 0.000000e+00 1373.0
22 TraesCS4B01G342000 chr2A 83.009 1542 221 20 1061 2594 2731853 2730345 0.000000e+00 1358.0
23 TraesCS4B01G342000 chr2B 83.495 927 134 14 1088 2009 305565 304653 0.000000e+00 846.0
24 TraesCS4B01G342000 chr2B 85.075 402 60 0 2078 2479 7847688 7847287 9.310000e-111 411.0
25 TraesCS4B01G342000 chr5B 96.203 79 2 1 3330 3407 491229567 491229489 1.050000e-25 128.0
26 TraesCS4B01G342000 chr5B 95.062 81 3 1 3328 3407 347385141 347385061 3.780000e-25 126.0
27 TraesCS4B01G342000 chr7B 93.902 82 4 1 3327 3407 214076583 214076664 4.880000e-24 122.0
28 TraesCS4B01G342000 chr7B 94.937 79 3 1 3330 3407 636307281 636307203 4.880000e-24 122.0
29 TraesCS4B01G342000 chr6B 93.827 81 5 0 3327 3407 23523026 23523106 4.880000e-24 122.0
30 TraesCS4B01G342000 chr3B 94.937 79 3 1 3330 3407 755222465 755222387 4.880000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G342000 chr4B 634980205 634983806 3601 False 6652.000000 6652 100.000000 1 3602 1 chr4B.!!$F3 3601
1 TraesCS4B01G342000 chr4B 634458683 634461898 3215 True 1540.400000 4019 91.012333 1 3293 3 chr4B.!!$R2 3292
2 TraesCS4B01G342000 chr4B 635867951 635869239 1288 False 647.000000 647 76.046000 1266 2566 1 chr4B.!!$F4 1300
3 TraesCS4B01G342000 chr4B 634765091 634766370 1279 False 586.000000 586 75.436000 1281 2578 1 chr4B.!!$F2 1297
4 TraesCS4B01G342000 chr4B 634726203 634727479 1276 True 582.000000 582 75.380000 1281 2578 1 chr4B.!!$R1 1297
5 TraesCS4B01G342000 chr4D 494875533 494879331 3798 False 1390.666667 3563 90.500000 6 3186 3 chr4D.!!$F3 3180
6 TraesCS4B01G342000 chr4D 495979081 495980369 1288 False 664.000000 664 76.328000 1266 2566 1 chr4D.!!$F2 1300
7 TraesCS4B01G342000 chr4D 494850794 494852045 1251 False 586.000000 586 75.583000 1281 2547 1 chr4D.!!$F1 1266
8 TraesCS4B01G342000 chr5A 674575426 674578254 2828 False 1224.466667 3347 93.346667 5 3070 3 chr5A.!!$F4 3065
9 TraesCS4B01G342000 chr5A 674371644 674372892 1248 False 590.000000 590 75.718000 1281 2547 1 chr5A.!!$F3 1266
10 TraesCS4B01G342000 chr7D 61235340 61236858 1518 False 1555.000000 1555 85.195000 1061 2594 1 chr7D.!!$F1 1533
11 TraesCS4B01G342000 chr7A 65163544 65165043 1499 False 1520.000000 1520 85.010000 1061 2575 1 chr7A.!!$F1 1514
12 TraesCS4B01G342000 chr2A 1776744 1778220 1476 False 1373.000000 1373 83.510000 1071 2574 1 chr2A.!!$F1 1503
13 TraesCS4B01G342000 chr2A 2730345 2731853 1508 True 1358.000000 1358 83.009000 1061 2594 1 chr2A.!!$R1 1533
14 TraesCS4B01G342000 chr2B 304653 305565 912 True 846.000000 846 83.495000 1088 2009 1 chr2B.!!$R1 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 1413 0.321671 ATTCTCACTCACACCACCCG 59.678 55.0 0.00 0.0 0.00 5.28 F
791 1419 0.681564 ACTCACACCACCCGCAAAAA 60.682 50.0 0.00 0.0 0.00 1.94 F
2047 2738 0.735471 CGTCGAGCAGAAGATCCTGA 59.265 55.0 3.41 0.0 36.29 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2581 3281 0.039165 TAGATAGAGCCATGCACGCG 60.039 55.0 3.53 3.53 0.00 6.01 R
2597 3297 0.095245 GCACGCACGTACGTACTAGA 59.905 55.0 22.34 0.00 46.34 2.43 R
3225 3989 0.187851 TCCTGCCCCCTAGCTAGTAC 59.812 60.0 19.31 6.34 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 192 6.932356 AATTCATCGTCAAGCATAGACAAT 57.068 33.333 4.48 0.00 35.77 2.71
225 227 7.064016 ACAATTGCTTTTCACGTAACAATTTGT 59.936 29.630 5.05 0.00 36.01 2.83
344 347 1.546029 CCTCATGAGGTCACGACTCAA 59.454 52.381 30.55 0.00 46.89 3.02
345 348 2.416566 CCTCATGAGGTCACGACTCAAG 60.417 54.545 30.55 3.15 46.89 3.02
346 349 2.489722 CTCATGAGGTCACGACTCAAGA 59.510 50.000 15.38 0.16 46.89 3.02
351 354 3.440522 TGAGGTCACGACTCAAGACTATG 59.559 47.826 0.00 0.00 41.66 2.23
352 355 3.687125 AGGTCACGACTCAAGACTATGA 58.313 45.455 0.00 0.00 32.98 2.15
353 356 7.845871 ATGAGGTCACGACTCAAGACTATGAG 61.846 46.154 11.03 11.03 46.89 2.90
397 547 7.515371 CGCTAGAAGTTACTACATGCTAAAAGC 60.515 40.741 0.00 0.00 42.82 3.51
697 1325 5.647658 AGAATTTCAGTTGCGTGGATAATGA 59.352 36.000 0.00 0.00 0.00 2.57
720 1348 6.485313 TGACATACCTTCTACAAAAACACAGG 59.515 38.462 0.00 0.00 0.00 4.00
737 1365 3.129287 CACAGGCCATACATTTCCACTTC 59.871 47.826 5.01 0.00 0.00 3.01
778 1406 3.836365 TCCACACAATTCTCACTCACA 57.164 42.857 0.00 0.00 0.00 3.58
779 1407 3.466836 TCCACACAATTCTCACTCACAC 58.533 45.455 0.00 0.00 0.00 3.82
780 1408 2.549754 CCACACAATTCTCACTCACACC 59.450 50.000 0.00 0.00 0.00 4.16
781 1409 3.205338 CACACAATTCTCACTCACACCA 58.795 45.455 0.00 0.00 0.00 4.17
782 1410 3.002656 CACACAATTCTCACTCACACCAC 59.997 47.826 0.00 0.00 0.00 4.16
783 1411 2.549754 CACAATTCTCACTCACACCACC 59.450 50.000 0.00 0.00 0.00 4.61
784 1412 2.154462 CAATTCTCACTCACACCACCC 58.846 52.381 0.00 0.00 0.00 4.61
785 1413 0.321671 ATTCTCACTCACACCACCCG 59.678 55.000 0.00 0.00 0.00 5.28
786 1414 2.357517 CTCACTCACACCACCCGC 60.358 66.667 0.00 0.00 0.00 6.13
787 1415 3.157949 TCACTCACACCACCCGCA 61.158 61.111 0.00 0.00 0.00 5.69
788 1416 2.203139 CACTCACACCACCCGCAA 60.203 61.111 0.00 0.00 0.00 4.85
789 1417 1.821759 CACTCACACCACCCGCAAA 60.822 57.895 0.00 0.00 0.00 3.68
790 1418 1.077357 ACTCACACCACCCGCAAAA 60.077 52.632 0.00 0.00 0.00 2.44
791 1419 0.681564 ACTCACACCACCCGCAAAAA 60.682 50.000 0.00 0.00 0.00 1.94
903 1531 2.408565 TCCTACTGATGACCCCAATCC 58.591 52.381 0.00 0.00 0.00 3.01
928 1556 1.478510 ACTGTAAGCTGATGGGAGACG 59.521 52.381 0.00 0.00 37.60 4.18
1032 1672 2.419297 GCGACCTCACATCTTCTTCCAT 60.419 50.000 0.00 0.00 0.00 3.41
1033 1673 3.866651 CGACCTCACATCTTCTTCCATT 58.133 45.455 0.00 0.00 0.00 3.16
1035 1675 4.195416 GACCTCACATCTTCTTCCATTCC 58.805 47.826 0.00 0.00 0.00 3.01
1036 1676 3.588842 ACCTCACATCTTCTTCCATTCCA 59.411 43.478 0.00 0.00 0.00 3.53
1037 1677 4.043310 ACCTCACATCTTCTTCCATTCCAA 59.957 41.667 0.00 0.00 0.00 3.53
1038 1678 4.639310 CCTCACATCTTCTTCCATTCCAAG 59.361 45.833 0.00 0.00 0.00 3.61
1039 1679 4.592942 TCACATCTTCTTCCATTCCAAGG 58.407 43.478 0.00 0.00 0.00 3.61
1590 2245 2.031163 GTGTTCCTGCGCCTCACT 59.969 61.111 4.18 0.00 0.00 3.41
1719 2374 1.070445 CCTCCGCCACATCATCTCC 59.930 63.158 0.00 0.00 0.00 3.71
2047 2738 0.735471 CGTCGAGCAGAAGATCCTGA 59.265 55.000 3.41 0.00 36.29 3.86
2597 3297 2.969238 GCGCGTGCATGGCTCTAT 60.969 61.111 17.66 0.00 42.15 1.98
2667 3372 2.472059 CGGGGCGTACGTAGCTACA 61.472 63.158 23.21 2.04 34.52 2.74
2677 3382 2.726555 CGTAGCTACACGTACGTCAT 57.273 50.000 19.94 12.43 37.77 3.06
2678 3383 2.360502 CGTAGCTACACGTACGTCATG 58.639 52.381 19.94 10.52 37.77 3.07
2734 3457 7.855904 GTGTGCTTAATAATAGTGTAATGGTGC 59.144 37.037 0.00 0.00 0.00 5.01
2752 3475 6.553953 TGGTGCTCCATACTACAAGAATAA 57.446 37.500 2.64 0.00 39.03 1.40
2754 3477 7.398829 TGGTGCTCCATACTACAAGAATAAAA 58.601 34.615 2.64 0.00 39.03 1.52
2755 3478 7.552687 TGGTGCTCCATACTACAAGAATAAAAG 59.447 37.037 2.64 0.00 39.03 2.27
2756 3479 7.553044 GGTGCTCCATACTACAAGAATAAAAGT 59.447 37.037 0.00 0.00 0.00 2.66
2792 3517 1.278637 GTGTGTAGGTGTGCGTTGC 59.721 57.895 0.00 0.00 0.00 4.17
2802 3527 0.876342 TGTGCGTTGCGACATGTGTA 60.876 50.000 1.15 0.00 0.00 2.90
2819 3544 7.552459 ACATGTGTATAAGCTGTATGTGTGTA 58.448 34.615 0.00 0.00 0.00 2.90
2861 3588 2.268920 GGCACCAGCTTGGATCGA 59.731 61.111 8.91 0.00 40.96 3.59
2862 3589 2.109126 GGCACCAGCTTGGATCGAC 61.109 63.158 8.91 0.00 40.96 4.20
2937 3687 8.790718 ACATTTCTGGAAGTTATCATATGCATC 58.209 33.333 0.19 0.00 33.76 3.91
2938 3688 7.750229 TTTCTGGAAGTTATCATATGCATCC 57.250 36.000 0.19 0.00 33.76 3.51
2939 3689 6.692849 TCTGGAAGTTATCATATGCATCCT 57.307 37.500 0.19 0.00 33.76 3.24
2949 3699 4.965814 TCATATGCATCCTCTCACTTTCC 58.034 43.478 0.19 0.00 0.00 3.13
2989 3739 6.941857 TCACACTTTTGTATGCTACATCCTA 58.058 36.000 0.00 0.00 38.68 2.94
3136 3897 1.555075 ACGCACAGGGAGTTGTATCAT 59.445 47.619 0.00 0.00 0.00 2.45
3179 3943 7.158099 AGTAATATAGATCAGCACGCATGTA 57.842 36.000 0.00 0.00 0.00 2.29
3186 3950 4.520874 AGATCAGCACGCATGTAGTACTAT 59.479 41.667 5.75 0.00 0.00 2.12
3187 3951 4.649088 TCAGCACGCATGTAGTACTATT 57.351 40.909 5.75 0.00 0.00 1.73
3188 3952 5.006153 TCAGCACGCATGTAGTACTATTT 57.994 39.130 5.75 0.00 0.00 1.40
3189 3953 5.416083 TCAGCACGCATGTAGTACTATTTT 58.584 37.500 5.75 0.00 0.00 1.82
3190 3954 6.566141 TCAGCACGCATGTAGTACTATTTTA 58.434 36.000 5.75 0.00 0.00 1.52
3191 3955 7.207383 TCAGCACGCATGTAGTACTATTTTAT 58.793 34.615 5.75 0.00 0.00 1.40
3192 3956 7.709182 TCAGCACGCATGTAGTACTATTTTATT 59.291 33.333 5.75 0.00 0.00 1.40
3193 3957 8.335356 CAGCACGCATGTAGTACTATTTTATTT 58.665 33.333 5.75 0.00 0.00 1.40
3194 3958 9.537192 AGCACGCATGTAGTACTATTTTATTTA 57.463 29.630 5.75 0.00 0.00 1.40
3223 3987 4.206958 ATGCATCGACACGCATGT 57.793 50.000 15.70 0.00 46.78 3.21
3224 3988 3.360886 ATGCATCGACACGCATGTA 57.639 47.368 15.70 0.00 46.78 2.29
3225 3989 1.211743 ATGCATCGACACGCATGTAG 58.788 50.000 15.70 0.00 46.78 2.74
3261 4025 3.867857 CAGGAGCTAGAAAGAAGGAACC 58.132 50.000 0.00 0.00 0.00 3.62
3265 4029 2.633481 AGCTAGAAAGAAGGAACCGTGT 59.367 45.455 0.00 0.00 0.00 4.49
3266 4030 3.830755 AGCTAGAAAGAAGGAACCGTGTA 59.169 43.478 0.00 0.00 0.00 2.90
3267 4031 3.925299 GCTAGAAAGAAGGAACCGTGTAC 59.075 47.826 0.00 0.00 0.00 2.90
3268 4032 3.022607 AGAAAGAAGGAACCGTGTACG 57.977 47.619 0.00 0.00 39.44 3.67
3269 4033 2.363359 AGAAAGAAGGAACCGTGTACGT 59.637 45.455 3.57 0.00 37.74 3.57
3287 4051 8.899776 CGTGTACGTATGAATAATTCTACTTCC 58.100 37.037 0.00 0.00 34.11 3.46
3290 4054 7.369551 ACGTATGAATAATTCTACTTCCCCA 57.630 36.000 0.00 0.00 0.00 4.96
3293 4057 7.878127 CGTATGAATAATTCTACTTCCCCACAT 59.122 37.037 0.00 0.00 0.00 3.21
3294 4058 9.574516 GTATGAATAATTCTACTTCCCCACATT 57.425 33.333 0.00 0.00 0.00 2.71
3295 4059 7.880160 TGAATAATTCTACTTCCCCACATTG 57.120 36.000 0.00 0.00 0.00 2.82
3296 4060 7.410174 TGAATAATTCTACTTCCCCACATTGT 58.590 34.615 0.00 0.00 0.00 2.71
3297 4061 7.893302 TGAATAATTCTACTTCCCCACATTGTT 59.107 33.333 0.00 0.00 0.00 2.83
3298 4062 8.664669 AATAATTCTACTTCCCCACATTGTTT 57.335 30.769 0.00 0.00 0.00 2.83
3299 4063 5.982890 ATTCTACTTCCCCACATTGTTTG 57.017 39.130 0.00 0.00 0.00 2.93
3300 4064 3.153919 TCTACTTCCCCACATTGTTTGC 58.846 45.455 0.00 0.00 0.00 3.68
3301 4065 1.047801 ACTTCCCCACATTGTTTGCC 58.952 50.000 0.00 0.00 0.00 4.52
3302 4066 1.047002 CTTCCCCACATTGTTTGCCA 58.953 50.000 0.00 0.00 0.00 4.92
3303 4067 1.415659 CTTCCCCACATTGTTTGCCAA 59.584 47.619 0.00 0.00 37.49 4.52
3304 4068 1.727062 TCCCCACATTGTTTGCCAAT 58.273 45.000 0.00 0.00 44.73 3.16
3305 4069 2.053244 TCCCCACATTGTTTGCCAATT 58.947 42.857 0.00 0.00 41.93 2.32
3306 4070 2.441001 TCCCCACATTGTTTGCCAATTT 59.559 40.909 0.00 0.00 41.93 1.82
3307 4071 2.553172 CCCCACATTGTTTGCCAATTTG 59.447 45.455 0.00 0.00 41.93 2.32
3308 4072 3.212685 CCCACATTGTTTGCCAATTTGT 58.787 40.909 0.00 0.00 41.93 2.83
3309 4073 3.003482 CCCACATTGTTTGCCAATTTGTG 59.997 43.478 0.00 0.00 41.93 3.33
3310 4074 3.626670 CCACATTGTTTGCCAATTTGTGT 59.373 39.130 7.58 0.00 41.93 3.72
3311 4075 4.260702 CCACATTGTTTGCCAATTTGTGTC 60.261 41.667 7.58 0.00 41.93 3.67
3312 4076 3.876320 ACATTGTTTGCCAATTTGTGTCC 59.124 39.130 0.00 0.00 41.93 4.02
3313 4077 3.902881 TTGTTTGCCAATTTGTGTCCT 57.097 38.095 0.00 0.00 0.00 3.85
3314 4078 3.902881 TGTTTGCCAATTTGTGTCCTT 57.097 38.095 0.00 0.00 0.00 3.36
3315 4079 3.791245 TGTTTGCCAATTTGTGTCCTTC 58.209 40.909 0.00 0.00 0.00 3.46
3316 4080 3.130633 GTTTGCCAATTTGTGTCCTTCC 58.869 45.455 0.00 0.00 0.00 3.46
3317 4081 2.079170 TGCCAATTTGTGTCCTTCCA 57.921 45.000 0.00 0.00 0.00 3.53
3318 4082 2.607499 TGCCAATTTGTGTCCTTCCAT 58.393 42.857 0.00 0.00 0.00 3.41
3319 4083 2.562298 TGCCAATTTGTGTCCTTCCATC 59.438 45.455 0.00 0.00 0.00 3.51
3320 4084 2.562298 GCCAATTTGTGTCCTTCCATCA 59.438 45.455 0.00 0.00 0.00 3.07
3321 4085 3.367703 GCCAATTTGTGTCCTTCCATCAG 60.368 47.826 0.00 0.00 0.00 2.90
3322 4086 4.081406 CCAATTTGTGTCCTTCCATCAGA 58.919 43.478 0.00 0.00 0.00 3.27
3323 4087 4.708421 CCAATTTGTGTCCTTCCATCAGAT 59.292 41.667 0.00 0.00 0.00 2.90
3324 4088 5.186409 CCAATTTGTGTCCTTCCATCAGATT 59.814 40.000 0.00 0.00 0.00 2.40
3325 4089 6.377996 CCAATTTGTGTCCTTCCATCAGATTA 59.622 38.462 0.00 0.00 0.00 1.75
3326 4090 7.069085 CCAATTTGTGTCCTTCCATCAGATTAT 59.931 37.037 0.00 0.00 0.00 1.28
3327 4091 7.814264 ATTTGTGTCCTTCCATCAGATTATC 57.186 36.000 0.00 0.00 0.00 1.75
3328 4092 5.955961 TGTGTCCTTCCATCAGATTATCA 57.044 39.130 0.00 0.00 0.00 2.15
3329 4093 6.312141 TGTGTCCTTCCATCAGATTATCAA 57.688 37.500 0.00 0.00 0.00 2.57
3330 4094 6.351711 TGTGTCCTTCCATCAGATTATCAAG 58.648 40.000 0.00 0.00 0.00 3.02
3331 4095 6.156775 TGTGTCCTTCCATCAGATTATCAAGA 59.843 38.462 0.00 0.00 0.00 3.02
3332 4096 6.705381 GTGTCCTTCCATCAGATTATCAAGAG 59.295 42.308 0.00 0.00 0.00 2.85
3333 4097 6.612863 TGTCCTTCCATCAGATTATCAAGAGA 59.387 38.462 0.00 0.00 0.00 3.10
3334 4098 6.928492 GTCCTTCCATCAGATTATCAAGAGAC 59.072 42.308 0.00 0.00 0.00 3.36
3335 4099 6.843333 TCCTTCCATCAGATTATCAAGAGACT 59.157 38.462 0.00 0.00 0.00 3.24
3336 4100 6.930164 CCTTCCATCAGATTATCAAGAGACTG 59.070 42.308 0.00 0.00 0.00 3.51
3337 4101 7.201983 CCTTCCATCAGATTATCAAGAGACTGA 60.202 40.741 0.00 0.00 38.44 3.41
3338 4102 7.287512 TCCATCAGATTATCAAGAGACTGAG 57.712 40.000 0.00 0.00 37.70 3.35
3339 4103 5.927689 CCATCAGATTATCAAGAGACTGAGC 59.072 44.000 0.00 0.00 37.70 4.26
3340 4104 5.528043 TCAGATTATCAAGAGACTGAGCC 57.472 43.478 0.00 0.00 32.04 4.70
3341 4105 4.037327 TCAGATTATCAAGAGACTGAGCCG 59.963 45.833 0.00 0.00 32.04 5.52
3342 4106 3.320541 AGATTATCAAGAGACTGAGCCGG 59.679 47.826 0.00 0.00 0.00 6.13
3343 4107 0.747255 TATCAAGAGACTGAGCCGGC 59.253 55.000 21.89 21.89 0.00 6.13
3344 4108 1.260538 ATCAAGAGACTGAGCCGGCA 61.261 55.000 31.54 7.98 0.00 5.69
3345 4109 1.220206 CAAGAGACTGAGCCGGCAT 59.780 57.895 31.54 14.28 0.00 4.40
3346 4110 0.461548 CAAGAGACTGAGCCGGCATA 59.538 55.000 31.54 16.21 0.00 3.14
3347 4111 1.069823 CAAGAGACTGAGCCGGCATAT 59.930 52.381 31.54 8.11 0.00 1.78
3348 4112 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
3349 4113 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
3350 4114 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
3351 4115 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
3352 4116 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
3353 4117 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
3354 4118 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
3355 4119 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
3356 4120 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
3357 4121 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
3358 4122 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
3359 4123 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
3360 4124 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
3361 4125 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
3362 4126 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
3363 4127 6.763135 GCCGGCATATCATCTTGAGATTTATA 59.237 38.462 24.80 0.00 31.21 0.98
3364 4128 7.280876 GCCGGCATATCATCTTGAGATTTATAA 59.719 37.037 24.80 0.00 31.21 0.98
3365 4129 9.166173 CCGGCATATCATCTTGAGATTTATAAA 57.834 33.333 0.00 0.00 31.21 1.40
3371 4135 7.807977 TCATCTTGAGATTTATAAAGCCACC 57.192 36.000 9.78 1.30 31.21 4.61
3372 4136 6.483307 TCATCTTGAGATTTATAAAGCCACCG 59.517 38.462 9.78 3.13 31.21 4.94
3373 4137 5.741011 TCTTGAGATTTATAAAGCCACCGT 58.259 37.500 9.78 0.00 0.00 4.83
3374 4138 6.880484 TCTTGAGATTTATAAAGCCACCGTA 58.120 36.000 9.78 0.00 0.00 4.02
3375 4139 6.984474 TCTTGAGATTTATAAAGCCACCGTAG 59.016 38.462 9.78 3.43 0.00 3.51
3388 4152 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
3389 4153 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
3394 4158 3.785499 CGCCTCGTCGTCGACAGA 61.785 66.667 24.13 19.27 41.35 3.41
3395 4159 2.559840 GCCTCGTCGTCGACAGAA 59.440 61.111 24.13 8.76 41.35 3.02
3396 4160 1.796749 GCCTCGTCGTCGACAGAAC 60.797 63.158 24.13 9.33 41.35 3.01
3397 4161 1.509370 CCTCGTCGTCGACAGAACG 60.509 63.158 24.13 22.03 41.35 3.95
3398 4162 1.203563 CTCGTCGTCGACAGAACGT 59.796 57.895 24.13 0.00 41.35 3.99
3399 4163 0.784978 CTCGTCGTCGACAGAACGTC 60.785 60.000 24.13 7.61 41.35 4.34
3400 4164 1.203563 CGTCGTCGACAGAACGTCT 59.796 57.895 24.13 0.00 42.98 4.18
3401 4165 0.784978 CGTCGTCGACAGAACGTCTC 60.785 60.000 24.13 0.73 42.98 3.36
3402 4166 0.452452 GTCGTCGACAGAACGTCTCC 60.452 60.000 20.28 0.00 42.98 3.71
3403 4167 0.602106 TCGTCGACAGAACGTCTCCT 60.602 55.000 17.16 0.00 42.98 3.69
3404 4168 0.179220 CGTCGACAGAACGTCTCCTC 60.179 60.000 17.16 0.00 42.98 3.71
3405 4169 0.168568 GTCGACAGAACGTCTCCTCC 59.831 60.000 11.55 0.00 42.98 4.30
3406 4170 0.959372 TCGACAGAACGTCTCCTCCC 60.959 60.000 0.00 0.00 42.98 4.30
3407 4171 1.507174 GACAGAACGTCTCCTCCCG 59.493 63.158 0.00 0.00 41.81 5.14
3408 4172 0.959372 GACAGAACGTCTCCTCCCGA 60.959 60.000 0.00 0.00 41.81 5.14
3409 4173 0.538977 ACAGAACGTCTCCTCCCGAA 60.539 55.000 0.00 0.00 0.00 4.30
3410 4174 0.818296 CAGAACGTCTCCTCCCGAAT 59.182 55.000 0.00 0.00 0.00 3.34
3411 4175 2.022195 CAGAACGTCTCCTCCCGAATA 58.978 52.381 0.00 0.00 0.00 1.75
3412 4176 2.623889 CAGAACGTCTCCTCCCGAATAT 59.376 50.000 0.00 0.00 0.00 1.28
3413 4177 3.068307 CAGAACGTCTCCTCCCGAATATT 59.932 47.826 0.00 0.00 0.00 1.28
3414 4178 3.705072 AGAACGTCTCCTCCCGAATATTT 59.295 43.478 0.00 0.00 0.00 1.40
3415 4179 4.891756 AGAACGTCTCCTCCCGAATATTTA 59.108 41.667 0.00 0.00 0.00 1.40
3416 4180 5.539193 AGAACGTCTCCTCCCGAATATTTAT 59.461 40.000 0.00 0.00 0.00 1.40
3417 4181 6.718454 AGAACGTCTCCTCCCGAATATTTATA 59.282 38.462 0.00 0.00 0.00 0.98
3418 4182 6.264841 ACGTCTCCTCCCGAATATTTATAC 57.735 41.667 0.00 0.00 0.00 1.47
3419 4183 5.771666 ACGTCTCCTCCCGAATATTTATACA 59.228 40.000 0.00 0.00 0.00 2.29
3420 4184 6.436532 ACGTCTCCTCCCGAATATTTATACAT 59.563 38.462 0.00 0.00 0.00 2.29
3421 4185 7.613022 ACGTCTCCTCCCGAATATTTATACATA 59.387 37.037 0.00 0.00 0.00 2.29
3422 4186 7.914346 CGTCTCCTCCCGAATATTTATACATAC 59.086 40.741 0.00 0.00 0.00 2.39
3423 4187 8.746530 GTCTCCTCCCGAATATTTATACATACA 58.253 37.037 0.00 0.00 0.00 2.29
3424 4188 9.488762 TCTCCTCCCGAATATTTATACATACAT 57.511 33.333 0.00 0.00 0.00 2.29
3425 4189 9.534565 CTCCTCCCGAATATTTATACATACATG 57.465 37.037 0.00 0.00 0.00 3.21
3426 4190 7.985184 TCCTCCCGAATATTTATACATACATGC 59.015 37.037 0.00 0.00 0.00 4.06
3427 4191 7.768582 CCTCCCGAATATTTATACATACATGCA 59.231 37.037 0.00 0.00 0.00 3.96
3428 4192 9.330063 CTCCCGAATATTTATACATACATGCAT 57.670 33.333 0.00 0.00 0.00 3.96
3429 4193 9.108284 TCCCGAATATTTATACATACATGCATG 57.892 33.333 25.09 25.09 0.00 4.06
3430 4194 8.892723 CCCGAATATTTATACATACATGCATGT 58.107 33.333 33.20 33.20 44.48 3.21
3436 4200 6.538189 TTATACATACATGCATGTTCCACG 57.462 37.500 35.45 20.90 41.97 4.94
3437 4201 2.710377 ACATACATGCATGTTCCACGT 58.290 42.857 35.45 21.48 41.97 4.49
3438 4202 3.867857 ACATACATGCATGTTCCACGTA 58.132 40.909 35.45 17.47 41.97 3.57
3439 4203 3.621268 ACATACATGCATGTTCCACGTAC 59.379 43.478 35.45 0.00 41.97 3.67
3440 4204 2.177394 ACATGCATGTTCCACGTACA 57.823 45.000 26.61 0.00 37.90 2.90
3441 4205 2.710377 ACATGCATGTTCCACGTACAT 58.290 42.857 26.61 0.00 37.90 2.29
3444 4208 5.578102 ACATGCATGTTCCACGTACATGTT 61.578 41.667 26.61 13.52 45.12 2.71
3445 4209 6.314738 ACATGCATGTTCCACGTACATGTTA 61.315 40.000 26.61 16.53 45.12 2.41
3446 4210 8.262931 ACATGCATGTTCCACGTACATGTTAC 62.263 42.308 26.61 12.69 45.12 2.50
3447 4211 4.593597 CATGTTCCACGTACATGTTACC 57.406 45.455 17.88 0.00 44.88 2.85
3448 4212 4.250464 CATGTTCCACGTACATGTTACCT 58.750 43.478 17.88 0.00 44.88 3.08
3449 4213 5.412640 CATGTTCCACGTACATGTTACCTA 58.587 41.667 17.88 0.00 44.88 3.08
3450 4214 5.465532 TGTTCCACGTACATGTTACCTAA 57.534 39.130 2.30 0.00 0.00 2.69
3451 4215 5.229423 TGTTCCACGTACATGTTACCTAAC 58.771 41.667 2.30 3.40 36.74 2.34
3452 4216 4.095410 TCCACGTACATGTTACCTAACG 57.905 45.455 13.51 13.51 39.00 3.18
3453 4217 2.599973 CCACGTACATGTTACCTAACGC 59.400 50.000 14.70 0.00 39.00 4.84
3454 4218 3.244156 CACGTACATGTTACCTAACGCA 58.756 45.455 14.70 0.00 39.00 5.24
3455 4219 3.861113 CACGTACATGTTACCTAACGCAT 59.139 43.478 14.70 0.00 39.00 4.73
3456 4220 5.036090 CACGTACATGTTACCTAACGCATA 58.964 41.667 14.70 0.00 39.00 3.14
3457 4221 5.036737 ACGTACATGTTACCTAACGCATAC 58.963 41.667 14.70 0.00 39.00 2.39
3458 4222 5.163622 ACGTACATGTTACCTAACGCATACT 60.164 40.000 14.70 0.00 39.00 2.12
3459 4223 5.745294 CGTACATGTTACCTAACGCATACTT 59.255 40.000 2.30 0.00 39.00 2.24
3460 4224 6.075205 CGTACATGTTACCTAACGCATACTTC 60.075 42.308 2.30 0.00 39.00 3.01
3461 4225 5.114081 ACATGTTACCTAACGCATACTTCC 58.886 41.667 0.00 0.00 39.00 3.46
3462 4226 4.127566 TGTTACCTAACGCATACTTCCC 57.872 45.455 0.00 0.00 39.00 3.97
3463 4227 3.514706 TGTTACCTAACGCATACTTCCCA 59.485 43.478 0.00 0.00 39.00 4.37
3464 4228 4.162698 TGTTACCTAACGCATACTTCCCAT 59.837 41.667 0.00 0.00 39.00 4.00
3465 4229 3.470645 ACCTAACGCATACTTCCCATC 57.529 47.619 0.00 0.00 0.00 3.51
3466 4230 2.223971 ACCTAACGCATACTTCCCATCG 60.224 50.000 0.00 0.00 0.00 3.84
3467 4231 2.223971 CCTAACGCATACTTCCCATCGT 60.224 50.000 0.00 0.00 0.00 3.73
3468 4232 2.396590 AACGCATACTTCCCATCGTT 57.603 45.000 0.00 0.00 35.66 3.85
3469 4233 2.396590 ACGCATACTTCCCATCGTTT 57.603 45.000 0.00 0.00 0.00 3.60
3470 4234 2.706890 ACGCATACTTCCCATCGTTTT 58.293 42.857 0.00 0.00 0.00 2.43
3471 4235 3.078837 ACGCATACTTCCCATCGTTTTT 58.921 40.909 0.00 0.00 0.00 1.94
3494 4258 8.477419 TTTTTATGAGGATTGGACAAGAGTTT 57.523 30.769 0.00 0.00 0.00 2.66
3495 4259 8.477419 TTTTATGAGGATTGGACAAGAGTTTT 57.523 30.769 0.00 0.00 0.00 2.43
3496 4260 9.581289 TTTTATGAGGATTGGACAAGAGTTTTA 57.419 29.630 0.00 0.00 0.00 1.52
3497 4261 9.753674 TTTATGAGGATTGGACAAGAGTTTTAT 57.246 29.630 0.00 0.00 0.00 1.40
3498 4262 9.753674 TTATGAGGATTGGACAAGAGTTTTATT 57.246 29.630 0.00 0.00 0.00 1.40
3499 4263 7.687941 TGAGGATTGGACAAGAGTTTTATTC 57.312 36.000 0.00 0.00 0.00 1.75
3500 4264 6.659242 TGAGGATTGGACAAGAGTTTTATTCC 59.341 38.462 0.00 0.00 0.00 3.01
3501 4265 6.552008 AGGATTGGACAAGAGTTTTATTCCA 58.448 36.000 0.00 0.00 0.00 3.53
3502 4266 7.010160 AGGATTGGACAAGAGTTTTATTCCAA 58.990 34.615 9.77 9.77 44.94 3.53
3503 4267 7.508977 AGGATTGGACAAGAGTTTTATTCCAAA 59.491 33.333 10.88 0.00 44.24 3.28
3504 4268 8.314021 GGATTGGACAAGAGTTTTATTCCAAAT 58.686 33.333 10.88 3.43 44.24 2.32
3505 4269 9.143631 GATTGGACAAGAGTTTTATTCCAAATG 57.856 33.333 10.88 0.00 44.24 2.32
3506 4270 6.454795 TGGACAAGAGTTTTATTCCAAATGC 58.545 36.000 0.00 0.00 30.08 3.56
3507 4271 6.041409 TGGACAAGAGTTTTATTCCAAATGCA 59.959 34.615 0.00 0.00 30.08 3.96
3508 4272 6.366061 GGACAAGAGTTTTATTCCAAATGCAC 59.634 38.462 0.00 0.00 0.00 4.57
3509 4273 6.815089 ACAAGAGTTTTATTCCAAATGCACA 58.185 32.000 0.00 0.00 0.00 4.57
3510 4274 6.925165 ACAAGAGTTTTATTCCAAATGCACAG 59.075 34.615 0.00 0.00 0.00 3.66
3511 4275 6.029346 AGAGTTTTATTCCAAATGCACAGG 57.971 37.500 0.00 0.00 0.00 4.00
3512 4276 5.047092 AGAGTTTTATTCCAAATGCACAGGG 60.047 40.000 0.00 0.00 0.00 4.45
3513 4277 4.837860 AGTTTTATTCCAAATGCACAGGGA 59.162 37.500 0.00 0.00 0.00 4.20
3514 4278 5.484998 AGTTTTATTCCAAATGCACAGGGAT 59.515 36.000 3.18 1.96 0.00 3.85
3515 4279 6.667414 AGTTTTATTCCAAATGCACAGGGATA 59.333 34.615 3.18 1.06 0.00 2.59
3516 4280 6.463995 TTTATTCCAAATGCACAGGGATAC 57.536 37.500 3.18 0.00 0.00 2.24
3517 4281 3.448093 TTCCAAATGCACAGGGATACA 57.552 42.857 3.18 0.00 39.74 2.29
3518 4282 3.448093 TCCAAATGCACAGGGATACAA 57.552 42.857 0.00 0.00 39.74 2.41
3519 4283 3.979911 TCCAAATGCACAGGGATACAAT 58.020 40.909 0.00 0.00 39.74 2.71
3520 4284 3.953612 TCCAAATGCACAGGGATACAATC 59.046 43.478 0.00 0.00 39.74 2.67
3521 4285 3.243168 CCAAATGCACAGGGATACAATCG 60.243 47.826 0.00 0.00 39.74 3.34
3522 4286 3.558931 AATGCACAGGGATACAATCGA 57.441 42.857 0.00 0.00 39.74 3.59
3523 4287 2.602257 TGCACAGGGATACAATCGAG 57.398 50.000 0.00 0.00 39.74 4.04
3524 4288 2.107366 TGCACAGGGATACAATCGAGA 58.893 47.619 0.00 0.00 39.74 4.04
3525 4289 2.499693 TGCACAGGGATACAATCGAGAA 59.500 45.455 0.00 0.00 39.74 2.87
3526 4290 3.126831 GCACAGGGATACAATCGAGAAG 58.873 50.000 0.00 0.00 39.74 2.85
3527 4291 3.126831 CACAGGGATACAATCGAGAAGC 58.873 50.000 0.00 0.00 39.74 3.86
3528 4292 2.766263 ACAGGGATACAATCGAGAAGCA 59.234 45.455 0.00 0.00 39.74 3.91
3529 4293 3.197766 ACAGGGATACAATCGAGAAGCAA 59.802 43.478 0.00 0.00 39.74 3.91
3530 4294 3.557595 CAGGGATACAATCGAGAAGCAAC 59.442 47.826 0.00 0.00 39.74 4.17
3531 4295 3.197766 AGGGATACAATCGAGAAGCAACA 59.802 43.478 0.00 0.00 39.74 3.33
3532 4296 3.938963 GGGATACAATCGAGAAGCAACAA 59.061 43.478 0.00 0.00 39.74 2.83
3533 4297 4.394920 GGGATACAATCGAGAAGCAACAAA 59.605 41.667 0.00 0.00 39.74 2.83
3534 4298 5.066505 GGGATACAATCGAGAAGCAACAAAT 59.933 40.000 0.00 0.00 39.74 2.32
3535 4299 5.967674 GGATACAATCGAGAAGCAACAAATG 59.032 40.000 0.00 0.00 0.00 2.32
3552 4316 2.870372 GCTCAATGCACGGTGGTC 59.130 61.111 10.60 0.00 42.31 4.02
3553 4317 2.690778 GCTCAATGCACGGTGGTCC 61.691 63.158 10.60 0.00 42.31 4.46
3554 4318 1.003355 CTCAATGCACGGTGGTCCT 60.003 57.895 10.60 0.00 0.00 3.85
3555 4319 1.003839 TCAATGCACGGTGGTCCTC 60.004 57.895 10.60 0.00 0.00 3.71
3556 4320 1.003355 CAATGCACGGTGGTCCTCT 60.003 57.895 10.60 0.00 0.00 3.69
3557 4321 0.249120 CAATGCACGGTGGTCCTCTA 59.751 55.000 10.60 0.00 0.00 2.43
3558 4322 0.249398 AATGCACGGTGGTCCTCTAC 59.751 55.000 10.60 0.00 0.00 2.59
3572 4336 4.861210 GTCCTCTACCAAGTCATACATCG 58.139 47.826 0.00 0.00 0.00 3.84
3573 4337 3.318275 TCCTCTACCAAGTCATACATCGC 59.682 47.826 0.00 0.00 0.00 4.58
3574 4338 3.068165 CCTCTACCAAGTCATACATCGCA 59.932 47.826 0.00 0.00 0.00 5.10
3575 4339 4.294232 CTCTACCAAGTCATACATCGCAG 58.706 47.826 0.00 0.00 0.00 5.18
3576 4340 3.699538 TCTACCAAGTCATACATCGCAGT 59.300 43.478 0.00 0.00 0.00 4.40
3577 4341 4.885325 TCTACCAAGTCATACATCGCAGTA 59.115 41.667 0.00 0.00 0.00 2.74
3578 4342 3.782046 ACCAAGTCATACATCGCAGTAC 58.218 45.455 0.00 0.00 0.00 2.73
3579 4343 3.447586 ACCAAGTCATACATCGCAGTACT 59.552 43.478 0.00 0.00 0.00 2.73
3580 4344 4.045104 CCAAGTCATACATCGCAGTACTC 58.955 47.826 0.00 0.00 0.00 2.59
3581 4345 4.202060 CCAAGTCATACATCGCAGTACTCT 60.202 45.833 0.00 0.00 0.00 3.24
3582 4346 4.822036 AGTCATACATCGCAGTACTCTC 57.178 45.455 0.00 0.00 0.00 3.20
3583 4347 4.456535 AGTCATACATCGCAGTACTCTCT 58.543 43.478 0.00 0.00 0.00 3.10
3584 4348 4.274705 AGTCATACATCGCAGTACTCTCTG 59.725 45.833 0.00 0.00 38.35 3.35
3585 4349 4.035792 GTCATACATCGCAGTACTCTCTGT 59.964 45.833 0.00 0.00 37.70 3.41
3586 4350 5.236695 GTCATACATCGCAGTACTCTCTGTA 59.763 44.000 0.00 0.00 37.70 2.74
3587 4351 5.998363 TCATACATCGCAGTACTCTCTGTAT 59.002 40.000 0.00 2.10 37.70 2.29
3588 4352 7.117956 GTCATACATCGCAGTACTCTCTGTATA 59.882 40.741 12.83 4.53 37.70 1.47
3589 4353 7.660208 TCATACATCGCAGTACTCTCTGTATAA 59.340 37.037 12.83 2.00 37.70 0.98
3590 4354 6.885952 ACATCGCAGTACTCTCTGTATAAT 57.114 37.500 0.00 0.00 37.70 1.28
3591 4355 7.278461 ACATCGCAGTACTCTCTGTATAATT 57.722 36.000 0.00 0.00 37.70 1.40
3592 4356 8.392372 ACATCGCAGTACTCTCTGTATAATTA 57.608 34.615 0.00 0.00 37.70 1.40
3593 4357 9.015367 ACATCGCAGTACTCTCTGTATAATTAT 57.985 33.333 2.97 2.97 37.70 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 6.543831 ACAAGAGTCAATATAGGCAACATTCC 59.456 38.462 0.00 0.00 41.41 3.01
69 70 7.559590 ACAAGAGTCAATATAGGCAACATTC 57.440 36.000 0.00 0.00 41.41 2.67
166 168 8.437360 AATTGTCTATGCTTGACGATGAATTA 57.563 30.769 0.00 0.00 38.25 1.40
344 347 5.837829 AGGAAAGGAGAGTTCTCATAGTCT 58.162 41.667 11.01 0.58 44.60 3.24
345 348 6.406512 GGAAGGAAAGGAGAGTTCTCATAGTC 60.407 46.154 11.01 5.46 44.60 2.59
346 349 5.423931 GGAAGGAAAGGAGAGTTCTCATAGT 59.576 44.000 11.01 0.00 44.60 2.12
351 354 2.093921 CGGGAAGGAAAGGAGAGTTCTC 60.094 54.545 0.39 0.39 42.14 2.87
352 355 1.903183 CGGGAAGGAAAGGAGAGTTCT 59.097 52.381 0.00 0.00 0.00 3.01
353 356 1.676314 GCGGGAAGGAAAGGAGAGTTC 60.676 57.143 0.00 0.00 0.00 3.01
354 357 0.325272 GCGGGAAGGAAAGGAGAGTT 59.675 55.000 0.00 0.00 0.00 3.01
397 547 3.045688 GCTTTTCGCTCAGGAAAACAAG 58.954 45.455 0.00 0.00 40.07 3.16
496 646 7.333423 CGATCTAAGTGGGAAGTGTTATTTGAA 59.667 37.037 0.00 0.00 0.00 2.69
654 1282 9.607285 GAAATTCTTTTGAGCTTACGTTGATAA 57.393 29.630 0.00 0.00 0.00 1.75
697 1325 5.240844 GCCTGTGTTTTTGTAGAAGGTATGT 59.759 40.000 0.00 0.00 0.00 2.29
720 1348 4.462483 TCTTTGGAAGTGGAAATGTATGGC 59.538 41.667 0.00 0.00 0.00 4.40
737 1365 7.716560 TGTGGATCACATATATGTTCTCTTTGG 59.283 37.037 15.85 2.71 39.62 3.28
803 1431 9.926158 GCTCCTACATATCATATCCAATATCTG 57.074 37.037 0.00 0.00 0.00 2.90
838 1466 8.786826 ACTTTGTGGTCTTCGATATAAAATGA 57.213 30.769 0.00 0.00 0.00 2.57
928 1556 2.488153 GTGTTTCATAGGTTGGTGAGGC 59.512 50.000 0.00 0.00 0.00 4.70
1035 1675 1.397390 GGGAATCCATGGCTGCCTTG 61.397 60.000 23.57 23.57 0.00 3.61
1036 1676 1.075748 GGGAATCCATGGCTGCCTT 60.076 57.895 21.03 11.16 0.00 4.35
1037 1677 2.004408 GAGGGAATCCATGGCTGCCT 62.004 60.000 21.74 21.74 34.83 4.75
1038 1678 1.530183 GAGGGAATCCATGGCTGCC 60.530 63.158 12.87 12.87 34.83 4.85
1039 1679 4.170947 GAGGGAATCCATGGCTGC 57.829 61.111 6.96 0.00 34.83 5.25
1159 1802 1.032114 CCGAAAAGATGGCCCAGGAC 61.032 60.000 0.00 0.00 0.00 3.85
1232 1881 1.279527 TTCGAAGTTGTAGCGCGTGG 61.280 55.000 8.43 0.00 0.00 4.94
1380 2029 2.032634 GTTGAAGATGCCGTCGCCA 61.033 57.895 0.00 0.00 0.00 5.69
1590 2245 1.202758 AGGTTGCAGGTCATGTCGAAA 60.203 47.619 0.00 0.00 0.00 3.46
2314 3014 3.197790 CGGCCTGAACTCCATGCG 61.198 66.667 0.00 0.00 37.29 4.73
2581 3281 0.039165 TAGATAGAGCCATGCACGCG 60.039 55.000 3.53 3.53 0.00 6.01
2594 3294 3.781161 CACGCACGTACGTACTAGATAG 58.219 50.000 22.34 7.18 46.34 2.08
2595 3295 2.033747 GCACGCACGTACGTACTAGATA 60.034 50.000 22.34 0.00 46.34 1.98
2596 3296 1.267732 GCACGCACGTACGTACTAGAT 60.268 52.381 22.34 0.69 46.34 1.98
2597 3297 0.095245 GCACGCACGTACGTACTAGA 59.905 55.000 22.34 0.00 46.34 2.43
2673 3378 7.631915 TGCACACATATAATACGTACATGAC 57.368 36.000 0.00 0.00 0.00 3.06
2674 3379 8.138712 TCTTGCACACATATAATACGTACATGA 58.861 33.333 0.00 0.00 0.00 3.07
2675 3380 8.293114 TCTTGCACACATATAATACGTACATG 57.707 34.615 0.00 2.24 0.00 3.21
2676 3381 8.141909 ACTCTTGCACACATATAATACGTACAT 58.858 33.333 0.00 0.00 0.00 2.29
2677 3382 7.434013 CACTCTTGCACACATATAATACGTACA 59.566 37.037 0.00 0.00 0.00 2.90
2678 3383 7.096189 CCACTCTTGCACACATATAATACGTAC 60.096 40.741 0.00 0.00 0.00 3.67
2761 3486 7.672738 CACACCTACACACGTCTATATTTTTC 58.327 38.462 0.00 0.00 0.00 2.29
2763 3488 5.579511 GCACACCTACACACGTCTATATTTT 59.420 40.000 0.00 0.00 0.00 1.82
2767 3492 2.096335 CGCACACCTACACACGTCTATA 59.904 50.000 0.00 0.00 0.00 1.31
2792 3517 5.748630 ACACATACAGCTTATACACATGTCG 59.251 40.000 0.00 0.00 0.00 4.35
2802 3527 6.801718 TTAGGGTACACACATACAGCTTAT 57.198 37.500 0.00 0.00 0.00 1.73
2819 3544 6.996282 CCATACGTCCATTTTCTATTTAGGGT 59.004 38.462 0.00 0.00 0.00 4.34
2859 3586 1.263484 ACCTGTATAGATCACGCGTCG 59.737 52.381 9.86 5.44 0.00 5.12
2860 3587 3.043586 CAACCTGTATAGATCACGCGTC 58.956 50.000 9.86 0.00 0.00 5.19
2861 3588 2.223735 CCAACCTGTATAGATCACGCGT 60.224 50.000 5.58 5.58 0.00 6.01
2862 3589 2.394708 CCAACCTGTATAGATCACGCG 58.605 52.381 3.53 3.53 0.00 6.01
2937 3687 5.463724 GCATAACGAATAGGAAAGTGAGAGG 59.536 44.000 0.00 0.00 0.00 3.69
2938 3688 6.042777 TGCATAACGAATAGGAAAGTGAGAG 58.957 40.000 0.00 0.00 0.00 3.20
2939 3689 5.972935 TGCATAACGAATAGGAAAGTGAGA 58.027 37.500 0.00 0.00 0.00 3.27
2949 3699 9.373750 CAAAAGTGTGATATGCATAACGAATAG 57.626 33.333 11.13 0.00 0.00 1.73
2989 3739 3.590824 GCCACGGCTAGTTGCAAT 58.409 55.556 0.59 0.00 45.15 3.56
3208 3972 1.517276 GTACTACATGCGTGTCGATGC 59.483 52.381 16.44 2.19 39.77 3.91
3209 3973 3.066369 AGTACTACATGCGTGTCGATG 57.934 47.619 16.44 7.23 39.77 3.84
3210 3974 3.303857 GCTAGTACTACATGCGTGTCGAT 60.304 47.826 16.44 4.86 39.77 3.59
3211 3975 2.031314 GCTAGTACTACATGCGTGTCGA 59.969 50.000 16.44 0.00 39.77 4.20
3212 3976 2.031807 AGCTAGTACTACATGCGTGTCG 59.968 50.000 16.44 12.26 39.77 4.35
3213 3977 3.694535 AGCTAGTACTACATGCGTGTC 57.305 47.619 16.44 0.52 39.77 3.67
3214 3978 3.564644 CCTAGCTAGTACTACATGCGTGT 59.435 47.826 19.31 17.19 42.39 4.49
3215 3979 3.058155 CCCTAGCTAGTACTACATGCGTG 60.058 52.174 19.31 3.82 0.00 5.34
3216 3980 3.147629 CCCTAGCTAGTACTACATGCGT 58.852 50.000 19.31 0.00 0.00 5.24
3217 3981 2.488545 CCCCTAGCTAGTACTACATGCG 59.511 54.545 19.31 0.07 0.00 4.73
3218 3982 2.826725 CCCCCTAGCTAGTACTACATGC 59.173 54.545 19.31 1.35 0.00 4.06
3219 3983 2.826725 GCCCCCTAGCTAGTACTACATG 59.173 54.545 19.31 1.49 0.00 3.21
3220 3984 2.449730 TGCCCCCTAGCTAGTACTACAT 59.550 50.000 19.31 0.00 0.00 2.29
3221 3985 1.854939 TGCCCCCTAGCTAGTACTACA 59.145 52.381 19.31 8.09 0.00 2.74
3222 3986 2.516906 CTGCCCCCTAGCTAGTACTAC 58.483 57.143 19.31 5.67 0.00 2.73
3223 3987 1.428139 CCTGCCCCCTAGCTAGTACTA 59.572 57.143 19.31 1.89 0.00 1.82
3224 3988 0.188834 CCTGCCCCCTAGCTAGTACT 59.811 60.000 19.31 0.00 0.00 2.73
3225 3989 0.187851 TCCTGCCCCCTAGCTAGTAC 59.812 60.000 19.31 6.34 0.00 2.73
3261 4025 8.899776 GGAAGTAGAATTATTCATACGTACACG 58.100 37.037 7.74 0.00 46.33 4.49
3265 4029 8.362639 GTGGGGAAGTAGAATTATTCATACGTA 58.637 37.037 7.74 0.00 0.00 3.57
3266 4030 7.147620 TGTGGGGAAGTAGAATTATTCATACGT 60.148 37.037 7.74 0.00 0.00 3.57
3267 4031 7.214381 TGTGGGGAAGTAGAATTATTCATACG 58.786 38.462 7.74 0.00 0.00 3.06
3268 4032 9.574516 AATGTGGGGAAGTAGAATTATTCATAC 57.425 33.333 7.74 6.99 0.00 2.39
3269 4033 9.573166 CAATGTGGGGAAGTAGAATTATTCATA 57.427 33.333 7.74 0.00 0.00 2.15
3293 4057 3.902881 AGGACACAAATTGGCAAACAA 57.097 38.095 3.01 0.00 44.54 2.83
3294 4058 3.431486 GGAAGGACACAAATTGGCAAACA 60.431 43.478 3.01 0.00 32.99 2.83
3295 4059 3.130633 GGAAGGACACAAATTGGCAAAC 58.869 45.455 3.01 0.00 32.99 2.93
3296 4060 2.768527 TGGAAGGACACAAATTGGCAAA 59.231 40.909 3.01 0.00 32.99 3.68
3297 4061 2.392662 TGGAAGGACACAAATTGGCAA 58.607 42.857 0.68 0.68 32.99 4.52
3298 4062 2.079170 TGGAAGGACACAAATTGGCA 57.921 45.000 0.00 0.00 32.99 4.92
3299 4063 2.562298 TGATGGAAGGACACAAATTGGC 59.438 45.455 0.00 0.00 0.00 4.52
3300 4064 4.081406 TCTGATGGAAGGACACAAATTGG 58.919 43.478 0.00 0.00 0.00 3.16
3301 4065 5.909621 ATCTGATGGAAGGACACAAATTG 57.090 39.130 0.00 0.00 0.00 2.32
3302 4066 7.835682 TGATAATCTGATGGAAGGACACAAATT 59.164 33.333 0.00 0.00 0.00 1.82
3303 4067 7.348815 TGATAATCTGATGGAAGGACACAAAT 58.651 34.615 0.00 0.00 0.00 2.32
3304 4068 6.720309 TGATAATCTGATGGAAGGACACAAA 58.280 36.000 0.00 0.00 0.00 2.83
3305 4069 6.312141 TGATAATCTGATGGAAGGACACAA 57.688 37.500 0.00 0.00 0.00 3.33
3306 4070 5.955961 TGATAATCTGATGGAAGGACACA 57.044 39.130 0.00 0.00 0.00 3.72
3307 4071 6.586344 TCTTGATAATCTGATGGAAGGACAC 58.414 40.000 0.00 0.00 0.00 3.67
3308 4072 6.612863 TCTCTTGATAATCTGATGGAAGGACA 59.387 38.462 0.00 0.00 0.00 4.02
3309 4073 6.928492 GTCTCTTGATAATCTGATGGAAGGAC 59.072 42.308 0.00 0.00 0.00 3.85
3310 4074 6.843333 AGTCTCTTGATAATCTGATGGAAGGA 59.157 38.462 0.00 0.00 0.00 3.36
3311 4075 6.930164 CAGTCTCTTGATAATCTGATGGAAGG 59.070 42.308 0.00 0.00 0.00 3.46
3312 4076 7.724287 TCAGTCTCTTGATAATCTGATGGAAG 58.276 38.462 0.00 0.00 0.00 3.46
3313 4077 7.666063 TCAGTCTCTTGATAATCTGATGGAA 57.334 36.000 0.00 0.00 0.00 3.53
3314 4078 6.239261 GCTCAGTCTCTTGATAATCTGATGGA 60.239 42.308 0.00 0.00 32.73 3.41
3315 4079 5.927689 GCTCAGTCTCTTGATAATCTGATGG 59.072 44.000 0.00 0.00 32.73 3.51
3316 4080 5.927689 GGCTCAGTCTCTTGATAATCTGATG 59.072 44.000 0.00 0.00 32.73 3.07
3317 4081 5.278907 CGGCTCAGTCTCTTGATAATCTGAT 60.279 44.000 0.00 0.00 32.73 2.90
3318 4082 4.037327 CGGCTCAGTCTCTTGATAATCTGA 59.963 45.833 0.00 0.00 0.00 3.27
3319 4083 4.297510 CGGCTCAGTCTCTTGATAATCTG 58.702 47.826 0.00 0.00 0.00 2.90
3320 4084 3.320541 CCGGCTCAGTCTCTTGATAATCT 59.679 47.826 0.00 0.00 0.00 2.40
3321 4085 3.648009 CCGGCTCAGTCTCTTGATAATC 58.352 50.000 0.00 0.00 0.00 1.75
3322 4086 2.224161 GCCGGCTCAGTCTCTTGATAAT 60.224 50.000 22.15 0.00 0.00 1.28
3323 4087 1.137086 GCCGGCTCAGTCTCTTGATAA 59.863 52.381 22.15 0.00 0.00 1.75
3324 4088 0.747255 GCCGGCTCAGTCTCTTGATA 59.253 55.000 22.15 0.00 0.00 2.15
3325 4089 1.260538 TGCCGGCTCAGTCTCTTGAT 61.261 55.000 29.70 0.00 0.00 2.57
3326 4090 1.260538 ATGCCGGCTCAGTCTCTTGA 61.261 55.000 29.70 1.81 0.00 3.02
3327 4091 0.461548 TATGCCGGCTCAGTCTCTTG 59.538 55.000 29.70 0.00 0.00 3.02
3328 4092 1.342819 GATATGCCGGCTCAGTCTCTT 59.657 52.381 29.70 1.60 0.00 2.85
3329 4093 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
3330 4094 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
3331 4095 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
3332 4096 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
3333 4097 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3334 4098 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
3335 4099 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
3336 4100 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
3337 4101 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
3338 4102 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
3339 4103 8.722480 TTATAAATCTCAAGATGATATGCCGG 57.278 34.615 0.00 0.00 34.49 6.13
3345 4109 9.507329 GGTGGCTTTATAAATCTCAAGATGATA 57.493 33.333 0.00 0.00 34.49 2.15
3346 4110 7.173907 CGGTGGCTTTATAAATCTCAAGATGAT 59.826 37.037 0.00 0.00 34.49 2.45
3347 4111 6.483307 CGGTGGCTTTATAAATCTCAAGATGA 59.517 38.462 0.00 0.00 34.49 2.92
3348 4112 6.260936 ACGGTGGCTTTATAAATCTCAAGATG 59.739 38.462 0.00 0.00 34.49 2.90
3349 4113 6.357367 ACGGTGGCTTTATAAATCTCAAGAT 58.643 36.000 0.00 0.00 36.07 2.40
3350 4114 5.741011 ACGGTGGCTTTATAAATCTCAAGA 58.259 37.500 0.00 0.00 0.00 3.02
3351 4115 6.202954 CCTACGGTGGCTTTATAAATCTCAAG 59.797 42.308 0.00 0.03 0.00 3.02
3352 4116 6.053005 CCTACGGTGGCTTTATAAATCTCAA 58.947 40.000 0.00 0.00 0.00 3.02
3353 4117 5.607477 CCTACGGTGGCTTTATAAATCTCA 58.393 41.667 0.00 0.00 0.00 3.27
3368 4132 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
3371 4135 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
3381 4145 1.202568 GACGTTCTGTCGACGACGA 59.797 57.895 31.60 18.27 46.56 4.20
3382 4146 3.720566 GACGTTCTGTCGACGACG 58.279 61.111 26.59 26.59 42.82 5.12
3390 4154 0.538977 TTCGGGAGGAGACGTTCTGT 60.539 55.000 0.00 0.00 0.00 3.41
3391 4155 0.818296 ATTCGGGAGGAGACGTTCTG 59.182 55.000 0.00 0.00 0.00 3.02
3392 4156 2.431954 TATTCGGGAGGAGACGTTCT 57.568 50.000 0.00 0.00 0.00 3.01
3393 4157 3.729862 AATATTCGGGAGGAGACGTTC 57.270 47.619 0.00 0.00 0.00 3.95
3394 4158 5.803237 ATAAATATTCGGGAGGAGACGTT 57.197 39.130 0.00 0.00 0.00 3.99
3395 4159 5.771666 TGTATAAATATTCGGGAGGAGACGT 59.228 40.000 0.00 0.00 0.00 4.34
3396 4160 6.263516 TGTATAAATATTCGGGAGGAGACG 57.736 41.667 0.00 0.00 0.00 4.18
3397 4161 8.746530 TGTATGTATAAATATTCGGGAGGAGAC 58.253 37.037 0.00 0.00 0.00 3.36
3398 4162 8.888836 TGTATGTATAAATATTCGGGAGGAGA 57.111 34.615 0.00 0.00 0.00 3.71
3399 4163 9.534565 CATGTATGTATAAATATTCGGGAGGAG 57.465 37.037 0.00 0.00 0.00 3.69
3400 4164 7.985184 GCATGTATGTATAAATATTCGGGAGGA 59.015 37.037 0.00 0.00 0.00 3.71
3401 4165 7.768582 TGCATGTATGTATAAATATTCGGGAGG 59.231 37.037 0.00 0.00 0.00 4.30
3402 4166 8.716646 TGCATGTATGTATAAATATTCGGGAG 57.283 34.615 0.00 0.00 0.00 4.30
3403 4167 9.108284 CATGCATGTATGTATAAATATTCGGGA 57.892 33.333 18.91 0.00 31.75 5.14
3404 4168 8.892723 ACATGCATGTATGTATAAATATTCGGG 58.107 33.333 30.50 0.00 39.40 5.14
3410 4174 8.716909 CGTGGAACATGCATGTATGTATAAATA 58.283 33.333 31.55 10.02 44.52 1.40
3411 4175 7.584108 CGTGGAACATGCATGTATGTATAAAT 58.416 34.615 31.55 13.47 44.52 1.40
3412 4176 6.953843 CGTGGAACATGCATGTATGTATAAA 58.046 36.000 31.55 12.23 44.52 1.40
3413 4177 6.538189 CGTGGAACATGCATGTATGTATAA 57.462 37.500 31.55 13.80 44.52 0.98
3427 4191 4.546829 AGGTAACATGTACGTGGAACAT 57.453 40.909 19.05 10.95 40.09 2.71
3428 4192 5.229423 GTTAGGTAACATGTACGTGGAACA 58.771 41.667 19.05 0.00 35.50 3.18
3429 4193 4.324402 CGTTAGGTAACATGTACGTGGAAC 59.676 45.833 19.05 14.87 41.41 3.62
3430 4194 4.484236 CGTTAGGTAACATGTACGTGGAA 58.516 43.478 19.05 3.93 41.41 3.53
3431 4195 3.673052 GCGTTAGGTAACATGTACGTGGA 60.673 47.826 19.05 4.06 41.41 4.02
3432 4196 2.599973 GCGTTAGGTAACATGTACGTGG 59.400 50.000 19.05 1.91 41.41 4.94
3433 4197 3.244156 TGCGTTAGGTAACATGTACGTG 58.756 45.455 13.64 13.64 41.41 4.49
3434 4198 3.574284 TGCGTTAGGTAACATGTACGT 57.426 42.857 15.68 10.60 41.41 3.57
3435 4199 5.276270 AGTATGCGTTAGGTAACATGTACG 58.724 41.667 11.30 11.30 41.41 3.67
3436 4200 6.199719 GGAAGTATGCGTTAGGTAACATGTAC 59.800 42.308 0.00 0.00 41.41 2.90
3437 4201 6.275335 GGAAGTATGCGTTAGGTAACATGTA 58.725 40.000 0.00 0.00 41.41 2.29
3438 4202 5.114081 GGAAGTATGCGTTAGGTAACATGT 58.886 41.667 0.00 0.00 41.41 3.21
3439 4203 4.510340 GGGAAGTATGCGTTAGGTAACATG 59.490 45.833 0.00 0.00 41.41 3.21
3440 4204 4.162698 TGGGAAGTATGCGTTAGGTAACAT 59.837 41.667 1.04 0.00 41.41 2.71
3441 4205 3.514706 TGGGAAGTATGCGTTAGGTAACA 59.485 43.478 1.04 0.00 41.41 2.41
3442 4206 4.127566 TGGGAAGTATGCGTTAGGTAAC 57.872 45.455 0.00 0.00 0.00 2.50
3443 4207 4.500205 CGATGGGAAGTATGCGTTAGGTAA 60.500 45.833 0.00 0.00 0.00 2.85
3444 4208 3.005050 CGATGGGAAGTATGCGTTAGGTA 59.995 47.826 0.00 0.00 0.00 3.08
3445 4209 2.223971 CGATGGGAAGTATGCGTTAGGT 60.224 50.000 0.00 0.00 0.00 3.08
3446 4210 2.223971 ACGATGGGAAGTATGCGTTAGG 60.224 50.000 0.00 0.00 0.00 2.69
3447 4211 3.093717 ACGATGGGAAGTATGCGTTAG 57.906 47.619 0.00 0.00 0.00 2.34
3448 4212 3.530265 AACGATGGGAAGTATGCGTTA 57.470 42.857 0.00 0.00 39.76 3.18
3449 4213 2.396590 AACGATGGGAAGTATGCGTT 57.603 45.000 0.00 0.00 37.17 4.84
3450 4214 2.396590 AAACGATGGGAAGTATGCGT 57.603 45.000 0.00 0.00 0.00 5.24
3451 4215 3.757745 AAAAACGATGGGAAGTATGCG 57.242 42.857 0.00 0.00 0.00 4.73
3469 4233 8.477419 AAACTCTTGTCCAATCCTCATAAAAA 57.523 30.769 0.00 0.00 0.00 1.94
3470 4234 8.477419 AAAACTCTTGTCCAATCCTCATAAAA 57.523 30.769 0.00 0.00 0.00 1.52
3471 4235 9.753674 ATAAAACTCTTGTCCAATCCTCATAAA 57.246 29.630 0.00 0.00 0.00 1.40
3472 4236 9.753674 AATAAAACTCTTGTCCAATCCTCATAA 57.246 29.630 0.00 0.00 0.00 1.90
3473 4237 9.396022 GAATAAAACTCTTGTCCAATCCTCATA 57.604 33.333 0.00 0.00 0.00 2.15
3474 4238 7.340487 GGAATAAAACTCTTGTCCAATCCTCAT 59.660 37.037 0.00 0.00 0.00 2.90
3475 4239 6.659242 GGAATAAAACTCTTGTCCAATCCTCA 59.341 38.462 0.00 0.00 0.00 3.86
3476 4240 6.659242 TGGAATAAAACTCTTGTCCAATCCTC 59.341 38.462 0.00 0.00 32.31 3.71
3477 4241 6.552008 TGGAATAAAACTCTTGTCCAATCCT 58.448 36.000 0.00 0.00 32.31 3.24
3478 4242 6.834168 TGGAATAAAACTCTTGTCCAATCC 57.166 37.500 0.00 0.00 32.31 3.01
3479 4243 9.143631 CATTTGGAATAAAACTCTTGTCCAATC 57.856 33.333 3.92 0.00 42.93 2.67
3480 4244 7.603784 GCATTTGGAATAAAACTCTTGTCCAAT 59.396 33.333 3.92 0.00 42.93 3.16
3481 4245 6.928492 GCATTTGGAATAAAACTCTTGTCCAA 59.072 34.615 0.00 0.00 42.03 3.53
3482 4246 6.041409 TGCATTTGGAATAAAACTCTTGTCCA 59.959 34.615 0.00 0.00 33.39 4.02
3483 4247 6.366061 GTGCATTTGGAATAAAACTCTTGTCC 59.634 38.462 0.00 0.00 0.00 4.02
3484 4248 6.922957 TGTGCATTTGGAATAAAACTCTTGTC 59.077 34.615 0.00 0.00 0.00 3.18
3485 4249 6.815089 TGTGCATTTGGAATAAAACTCTTGT 58.185 32.000 0.00 0.00 0.00 3.16
3486 4250 6.366877 CCTGTGCATTTGGAATAAAACTCTTG 59.633 38.462 0.00 0.00 0.00 3.02
3487 4251 6.458210 CCTGTGCATTTGGAATAAAACTCTT 58.542 36.000 0.00 0.00 0.00 2.85
3488 4252 5.047092 CCCTGTGCATTTGGAATAAAACTCT 60.047 40.000 0.00 0.00 0.00 3.24
3489 4253 5.047377 TCCCTGTGCATTTGGAATAAAACTC 60.047 40.000 0.00 0.00 0.00 3.01
3490 4254 4.837860 TCCCTGTGCATTTGGAATAAAACT 59.162 37.500 0.00 0.00 0.00 2.66
3491 4255 5.146010 TCCCTGTGCATTTGGAATAAAAC 57.854 39.130 0.00 0.00 0.00 2.43
3492 4256 6.438741 TGTATCCCTGTGCATTTGGAATAAAA 59.561 34.615 5.32 0.00 0.00 1.52
3493 4257 5.954752 TGTATCCCTGTGCATTTGGAATAAA 59.045 36.000 5.32 0.00 0.00 1.40
3494 4258 5.514169 TGTATCCCTGTGCATTTGGAATAA 58.486 37.500 5.32 0.00 0.00 1.40
3495 4259 5.122707 TGTATCCCTGTGCATTTGGAATA 57.877 39.130 5.32 0.00 0.00 1.75
3496 4260 3.979911 TGTATCCCTGTGCATTTGGAAT 58.020 40.909 5.32 0.00 0.00 3.01
3497 4261 3.448093 TGTATCCCTGTGCATTTGGAA 57.552 42.857 5.32 0.00 0.00 3.53
3498 4262 3.448093 TTGTATCCCTGTGCATTTGGA 57.552 42.857 3.86 3.86 0.00 3.53
3499 4263 3.243168 CGATTGTATCCCTGTGCATTTGG 60.243 47.826 0.00 0.00 0.00 3.28
3500 4264 3.627123 TCGATTGTATCCCTGTGCATTTG 59.373 43.478 0.00 0.00 0.00 2.32
3501 4265 3.879295 CTCGATTGTATCCCTGTGCATTT 59.121 43.478 0.00 0.00 0.00 2.32
3502 4266 3.134623 TCTCGATTGTATCCCTGTGCATT 59.865 43.478 0.00 0.00 0.00 3.56
3503 4267 2.700371 TCTCGATTGTATCCCTGTGCAT 59.300 45.455 0.00 0.00 0.00 3.96
3504 4268 2.107366 TCTCGATTGTATCCCTGTGCA 58.893 47.619 0.00 0.00 0.00 4.57
3505 4269 2.890808 TCTCGATTGTATCCCTGTGC 57.109 50.000 0.00 0.00 0.00 4.57
3506 4270 3.126831 GCTTCTCGATTGTATCCCTGTG 58.873 50.000 0.00 0.00 0.00 3.66
3507 4271 2.766263 TGCTTCTCGATTGTATCCCTGT 59.234 45.455 0.00 0.00 0.00 4.00
3508 4272 3.459232 TGCTTCTCGATTGTATCCCTG 57.541 47.619 0.00 0.00 0.00 4.45
3509 4273 3.197766 TGTTGCTTCTCGATTGTATCCCT 59.802 43.478 0.00 0.00 0.00 4.20
3510 4274 3.531538 TGTTGCTTCTCGATTGTATCCC 58.468 45.455 0.00 0.00 0.00 3.85
3511 4275 5.545658 TTTGTTGCTTCTCGATTGTATCC 57.454 39.130 0.00 0.00 0.00 2.59
3535 4299 2.690778 GGACCACCGTGCATTGAGC 61.691 63.158 0.00 0.00 45.96 4.26
3536 4300 1.003355 AGGACCACCGTGCATTGAG 60.003 57.895 0.00 0.00 41.83 3.02
3537 4301 1.003839 GAGGACCACCGTGCATTGA 60.004 57.895 0.00 0.00 41.83 2.57
3538 4302 0.249120 TAGAGGACCACCGTGCATTG 59.751 55.000 0.00 0.00 41.83 2.82
3539 4303 0.249398 GTAGAGGACCACCGTGCATT 59.751 55.000 0.00 0.00 41.83 3.56
3540 4304 1.898154 GTAGAGGACCACCGTGCAT 59.102 57.895 0.00 0.00 41.83 3.96
3541 4305 3.373226 GTAGAGGACCACCGTGCA 58.627 61.111 0.00 0.00 41.83 4.57
3550 4314 4.793353 GCGATGTATGACTTGGTAGAGGAC 60.793 50.000 0.00 0.00 0.00 3.85
3551 4315 3.318275 GCGATGTATGACTTGGTAGAGGA 59.682 47.826 0.00 0.00 0.00 3.71
3552 4316 3.068165 TGCGATGTATGACTTGGTAGAGG 59.932 47.826 0.00 0.00 0.00 3.69
3553 4317 4.202060 ACTGCGATGTATGACTTGGTAGAG 60.202 45.833 0.00 0.00 0.00 2.43
3554 4318 3.699538 ACTGCGATGTATGACTTGGTAGA 59.300 43.478 0.00 0.00 0.00 2.59
3555 4319 4.046938 ACTGCGATGTATGACTTGGTAG 57.953 45.455 0.00 0.00 0.00 3.18
3556 4320 4.643334 AGTACTGCGATGTATGACTTGGTA 59.357 41.667 0.00 0.00 0.00 3.25
3557 4321 3.447586 AGTACTGCGATGTATGACTTGGT 59.552 43.478 0.00 0.00 0.00 3.67
3558 4322 4.045104 GAGTACTGCGATGTATGACTTGG 58.955 47.826 0.00 0.00 0.00 3.61
3559 4323 4.926244 AGAGTACTGCGATGTATGACTTG 58.074 43.478 0.00 0.00 0.00 3.16
3560 4324 4.884744 AGAGAGTACTGCGATGTATGACTT 59.115 41.667 0.00 0.00 0.00 3.01
3561 4325 4.274705 CAGAGAGTACTGCGATGTATGACT 59.725 45.833 0.00 0.00 0.00 3.41
3562 4326 4.035792 ACAGAGAGTACTGCGATGTATGAC 59.964 45.833 0.00 0.00 41.06 3.06
3563 4327 4.200092 ACAGAGAGTACTGCGATGTATGA 58.800 43.478 0.00 0.00 41.06 2.15
3564 4328 4.560136 ACAGAGAGTACTGCGATGTATG 57.440 45.455 0.00 0.00 41.06 2.39
3565 4329 7.981102 TTATACAGAGAGTACTGCGATGTAT 57.019 36.000 17.15 17.15 41.06 2.29
3566 4330 7.981102 ATTATACAGAGAGTACTGCGATGTA 57.019 36.000 0.00 4.77 41.06 2.29
3567 4331 6.885952 ATTATACAGAGAGTACTGCGATGT 57.114 37.500 0.00 2.48 41.06 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.