Multiple sequence alignment - TraesCS4B01G341800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G341800 chr4B 100.000 3306 0 0 1 3306 634728797 634725492 0.000000e+00 6106.0
1 TraesCS4B01G341800 chr4B 93.659 1987 82 13 875 2857 634764660 634766606 0.000000e+00 2931.0
2 TraesCS4B01G341800 chr4B 91.045 201 17 1 586 786 634751304 634751503 1.730000e-68 270.0
3 TraesCS4B01G341800 chr4B 100.000 135 0 0 3635 3769 634725163 634725029 2.250000e-62 250.0
4 TraesCS4B01G341800 chr4B 84.247 146 13 4 364 499 634736551 634736406 2.360000e-27 134.0
5 TraesCS4B01G341800 chr4B 96.000 75 2 1 2854 2928 634766887 634766960 1.840000e-23 121.0
6 TraesCS4B01G341800 chr4D 92.828 2412 100 29 500 2870 494849980 494852359 0.000000e+00 3428.0
7 TraesCS4B01G341800 chr4D 94.059 505 13 7 1 500 494848508 494849000 0.000000e+00 750.0
8 TraesCS4B01G341800 chr5A 93.276 1993 82 19 875 2847 674371201 674373161 0.000000e+00 2891.0
9 TraesCS4B01G341800 chr5A 92.760 221 15 1 643 862 674370895 674371115 6.080000e-83 318.0
10 TraesCS4B01G341800 chr5A 83.957 187 13 6 321 500 674368341 674368517 3.010000e-36 163.0
11 TraesCS4B01G341800 chr3A 90.132 1510 142 5 1091 2593 711115397 711116906 0.000000e+00 1956.0
12 TraesCS4B01G341800 chr3A 87.914 1630 160 21 988 2591 711253920 711252302 0.000000e+00 1884.0
13 TraesCS4B01G341800 chr3B 89.718 1527 142 6 1080 2591 766636717 766635191 0.000000e+00 1936.0
14 TraesCS4B01G341800 chr3B 88.657 1534 138 12 1080 2591 766593165 766594684 0.000000e+00 1836.0
15 TraesCS4B01G341800 chr3B 89.522 983 103 0 1320 2302 766179623 766178641 0.000000e+00 1245.0
16 TraesCS4B01G341800 chr3B 88.116 791 92 2 1075 1864 795194457 795193668 0.000000e+00 939.0
17 TraesCS4B01G341800 chr3B 85.369 745 93 8 1862 2591 795185045 795184302 0.000000e+00 758.0
18 TraesCS4B01G341800 chr3D 86.615 1539 177 22 1075 2591 592973786 592972255 0.000000e+00 1674.0
19 TraesCS4B01G341800 chr3D 89.289 1167 110 7 1437 2588 575631706 575632872 0.000000e+00 1448.0
20 TraesCS4B01G341800 chr3D 89.203 991 89 6 1619 2591 575733644 575732654 0.000000e+00 1221.0
21 TraesCS4B01G341800 chr7B 88.220 382 31 7 2938 3306 552125179 552125559 9.610000e-121 444.0
22 TraesCS4B01G341800 chr7D 86.982 338 33 4 2963 3291 518792797 518793132 1.650000e-98 370.0
23 TraesCS4B01G341800 chr1D 82.799 343 32 16 2958 3287 33749572 33749900 7.970000e-72 281.0
24 TraesCS4B01G341800 chr7A 80.345 290 36 10 2929 3208 594553664 594553942 2.300000e-47 200.0
25 TraesCS4B01G341800 chr7A 96.970 33 0 1 3020 3052 33876099 33876130 2.000000e-03 54.7
26 TraesCS4B01G341800 chr7A 96.875 32 0 1 3020 3051 33875872 33875902 7.000000e-03 52.8
27 TraesCS4B01G341800 chr6D 80.916 262 35 9 2938 3190 123165044 123165299 3.840000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G341800 chr4B 634725029 634728797 3768 True 3178 6106 100.000000 1 3769 2 chr4B.!!$R2 3768
1 TraesCS4B01G341800 chr4B 634764660 634766960 2300 False 1526 2931 94.829500 875 2928 2 chr4B.!!$F2 2053
2 TraesCS4B01G341800 chr4D 494848508 494852359 3851 False 2089 3428 93.443500 1 2870 2 chr4D.!!$F1 2869
3 TraesCS4B01G341800 chr5A 674368341 674373161 4820 False 1124 2891 89.997667 321 2847 3 chr5A.!!$F1 2526
4 TraesCS4B01G341800 chr3A 711115397 711116906 1509 False 1956 1956 90.132000 1091 2593 1 chr3A.!!$F1 1502
5 TraesCS4B01G341800 chr3A 711252302 711253920 1618 True 1884 1884 87.914000 988 2591 1 chr3A.!!$R1 1603
6 TraesCS4B01G341800 chr3B 766635191 766636717 1526 True 1936 1936 89.718000 1080 2591 1 chr3B.!!$R2 1511
7 TraesCS4B01G341800 chr3B 766593165 766594684 1519 False 1836 1836 88.657000 1080 2591 1 chr3B.!!$F1 1511
8 TraesCS4B01G341800 chr3B 766178641 766179623 982 True 1245 1245 89.522000 1320 2302 1 chr3B.!!$R1 982
9 TraesCS4B01G341800 chr3B 795193668 795194457 789 True 939 939 88.116000 1075 1864 1 chr3B.!!$R4 789
10 TraesCS4B01G341800 chr3B 795184302 795185045 743 True 758 758 85.369000 1862 2591 1 chr3B.!!$R3 729
11 TraesCS4B01G341800 chr3D 592972255 592973786 1531 True 1674 1674 86.615000 1075 2591 1 chr3D.!!$R2 1516
12 TraesCS4B01G341800 chr3D 575631706 575632872 1166 False 1448 1448 89.289000 1437 2588 1 chr3D.!!$F1 1151
13 TraesCS4B01G341800 chr3D 575732654 575733644 990 True 1221 1221 89.203000 1619 2591 1 chr3D.!!$R1 972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 427 0.921347 CTATCAAGCCACGTACGCAC 59.079 55.0 16.72 4.81 0.00 5.34 F
1121 3910 0.395036 AGCTCTCGCTCTCCTTGCTA 60.395 55.0 0.00 0.00 45.15 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 5108 0.320771 ACAGCGACACCATCACCTTC 60.321 55.0 0.00 0.0 0.0 3.46 R
2976 6114 0.110147 CTAGATCTAACGGCTCGCGG 60.110 60.0 6.13 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.330944 AAATTGTGATAGGCATGCATGG 57.669 40.909 27.34 10.03 0.00 3.66
41 42 1.270518 GCATGGCCGAGATCATACAGT 60.271 52.381 0.00 0.00 0.00 3.55
42 43 2.029020 GCATGGCCGAGATCATACAGTA 60.029 50.000 0.00 0.00 0.00 2.74
48 49 5.880887 TGGCCGAGATCATACAGTATACTAG 59.119 44.000 4.74 3.11 0.00 2.57
89 93 1.009222 GATGCATAGCAAGCCACGC 60.009 57.895 0.00 0.00 43.62 5.34
90 94 2.706523 GATGCATAGCAAGCCACGCG 62.707 60.000 3.53 3.53 43.62 6.01
91 95 4.894203 GCATAGCAAGCCACGCGC 62.894 66.667 5.73 0.00 37.98 6.86
92 96 4.580044 CATAGCAAGCCACGCGCG 62.580 66.667 30.96 30.96 44.76 6.86
180 186 1.904865 CCAGCTGCAAGGGAGCAAA 60.905 57.895 8.66 0.00 45.13 3.68
187 193 1.133945 TGCAAGGGAGCAAAGTACACA 60.134 47.619 0.00 0.00 42.46 3.72
246 252 5.174395 CAGGATATCAATCGGAACCATCTC 58.826 45.833 4.83 0.00 32.44 2.75
247 253 4.223923 AGGATATCAATCGGAACCATCTCC 59.776 45.833 4.83 0.00 32.44 3.71
256 262 2.146342 GGAACCATCTCCACGCATATG 58.854 52.381 0.00 0.00 35.36 1.78
257 263 2.224281 GGAACCATCTCCACGCATATGA 60.224 50.000 6.97 0.00 35.36 2.15
258 264 3.557898 GGAACCATCTCCACGCATATGAT 60.558 47.826 6.97 0.00 35.36 2.45
259 265 4.322725 GGAACCATCTCCACGCATATGATA 60.323 45.833 6.97 0.00 35.36 2.15
260 266 5.423015 GAACCATCTCCACGCATATGATAT 58.577 41.667 6.97 0.00 0.00 1.63
421 427 0.921347 CTATCAAGCCACGTACGCAC 59.079 55.000 16.72 4.81 0.00 5.34
504 1606 2.552743 CAATCGGAGTATGCTACCTCGA 59.447 50.000 0.00 0.00 37.76 4.04
536 1638 7.688918 ATAGGAGATGAAGATGAGACCTTTT 57.311 36.000 0.00 0.00 0.00 2.27
539 1641 7.563906 AGGAGATGAAGATGAGACCTTTTAAG 58.436 38.462 0.00 0.00 0.00 1.85
541 1643 7.494298 GGAGATGAAGATGAGACCTTTTAAGTC 59.506 40.741 0.00 0.00 34.31 3.01
550 1652 5.006941 TGAGACCTTTTAAGTCGGAAAAACG 59.993 40.000 0.00 0.00 39.31 3.60
557 1659 7.646526 CCTTTTAAGTCGGAAAAACGAAAGAAT 59.353 33.333 0.00 0.00 45.38 2.40
566 1668 6.855914 CGGAAAAACGAAAGAATTGAGATCAA 59.144 34.615 0.00 0.00 36.74 2.57
569 1671 5.629079 AACGAAAGAATTGAGATCAACCC 57.371 39.130 0.00 0.00 38.86 4.11
574 1676 7.711339 ACGAAAGAATTGAGATCAACCCTATAC 59.289 37.037 0.00 0.00 38.86 1.47
609 1712 5.731678 AGGGAGTACCATATTTCTCACCTTT 59.268 40.000 0.00 0.00 43.89 3.11
813 3504 5.242393 CACCACTGGTCTCAAGATTTCAAAT 59.758 40.000 0.00 0.00 31.02 2.32
893 3658 2.435805 TGCCAATCAGGAGTACCATCTC 59.564 50.000 0.00 0.00 41.22 2.75
907 3672 5.774690 AGTACCATCTCAAATGAAAGCCAAA 59.225 36.000 0.00 0.00 0.00 3.28
937 3710 5.459536 TTGATTATGCTCTGCTCGAGTAT 57.540 39.130 15.13 10.73 45.45 2.12
938 3711 4.802999 TGATTATGCTCTGCTCGAGTATG 58.197 43.478 15.13 6.79 43.68 2.39
946 3719 4.452795 GCTCTGCTCGAGTATGAGTACATA 59.547 45.833 22.49 0.00 41.98 2.29
949 3722 7.465379 GCTCTGCTCGAGTATGAGTACATATAG 60.465 44.444 22.49 8.27 41.98 1.31
950 3723 6.819146 TCTGCTCGAGTATGAGTACATATAGG 59.181 42.308 15.13 0.00 40.45 2.57
974 3759 2.281276 ACCCTCCAAACGTTCGCC 60.281 61.111 0.00 0.00 0.00 5.54
982 3767 1.663702 AAACGTTCGCCAGTCTCCG 60.664 57.895 0.00 0.00 0.00 4.63
1121 3910 0.395036 AGCTCTCGCTCTCCTTGCTA 60.395 55.000 0.00 0.00 45.15 3.49
1421 4210 1.967066 GAGATCATGGACATCCTCGGT 59.033 52.381 0.00 0.00 36.82 4.69
1737 4526 2.187946 CCATGGACGTGCTCCTCC 59.812 66.667 5.56 0.00 40.26 4.30
1954 4771 2.501222 CAGAACGGTCGTCGACGG 60.501 66.667 35.05 25.88 42.43 4.79
2569 5404 1.466167 CCACATCAAGAACGGCTTCAG 59.534 52.381 0.00 0.00 33.60 3.02
2618 5453 6.366877 CAGGTGCTTGATTAAAAGGTGAATTG 59.633 38.462 0.00 0.00 0.00 2.32
2619 5454 6.267471 AGGTGCTTGATTAAAAGGTGAATTGA 59.733 34.615 0.00 0.00 0.00 2.57
2639 5474 1.623811 AGAGTAATCAACCGTGTGCCT 59.376 47.619 0.00 0.00 0.00 4.75
2640 5475 1.732259 GAGTAATCAACCGTGTGCCTG 59.268 52.381 0.00 0.00 0.00 4.85
2641 5476 1.346395 AGTAATCAACCGTGTGCCTGA 59.654 47.619 0.00 0.00 0.00 3.86
2642 5477 2.027192 AGTAATCAACCGTGTGCCTGAT 60.027 45.455 0.00 0.00 0.00 2.90
2643 5478 1.167851 AATCAACCGTGTGCCTGATG 58.832 50.000 0.00 0.00 0.00 3.07
2644 5479 0.677731 ATCAACCGTGTGCCTGATGG 60.678 55.000 0.00 0.00 0.00 3.51
2645 5480 1.302431 CAACCGTGTGCCTGATGGA 60.302 57.895 0.00 0.00 34.57 3.41
2683 5518 0.451783 GCATGGAGTCGGCGAATTTT 59.548 50.000 12.92 0.00 0.00 1.82
2695 5530 1.318491 GCGAATTTTTAGCTGCGCTTG 59.682 47.619 9.73 2.28 40.44 4.01
2696 5531 2.850321 CGAATTTTTAGCTGCGCTTGA 58.150 42.857 9.73 0.00 40.44 3.02
2697 5532 3.429085 CGAATTTTTAGCTGCGCTTGAT 58.571 40.909 9.73 2.54 40.44 2.57
2698 5533 3.479949 CGAATTTTTAGCTGCGCTTGATC 59.520 43.478 9.73 0.00 40.44 2.92
2716 5551 2.499981 CGATCGATCGCTGACAAGG 58.500 57.895 32.34 5.85 43.84 3.61
2741 5583 2.748605 CCGCATGTAGCTAGAAGGAAG 58.251 52.381 0.00 0.00 42.61 3.46
2798 5649 3.688185 CCAGTAGCAAGTCGTACTCACTA 59.312 47.826 0.00 0.00 0.00 2.74
2852 5706 6.680874 ACTAGTACTCACTCCGTATCAAAG 57.319 41.667 0.00 0.00 36.14 2.77
2865 6003 6.931838 TCCGTATCAAAGTAAGTGTCTCAAT 58.068 36.000 0.00 0.00 0.00 2.57
2873 6011 6.715347 AAGTAAGTGTCTCAATTTTGCCTT 57.285 33.333 0.00 0.00 0.00 4.35
2933 6071 2.691409 TGAGTCTATCAAAAGGGCCG 57.309 50.000 0.00 0.00 34.02 6.13
2934 6072 1.906574 TGAGTCTATCAAAAGGGCCGT 59.093 47.619 0.00 0.00 34.02 5.68
2935 6073 2.093658 TGAGTCTATCAAAAGGGCCGTC 60.094 50.000 0.00 0.00 34.02 4.79
2936 6074 2.168728 GAGTCTATCAAAAGGGCCGTCT 59.831 50.000 0.00 0.00 0.00 4.18
2937 6075 2.572104 AGTCTATCAAAAGGGCCGTCTT 59.428 45.455 0.00 0.00 0.00 3.01
2938 6076 3.773119 AGTCTATCAAAAGGGCCGTCTTA 59.227 43.478 0.00 0.00 0.00 2.10
2939 6077 3.869832 GTCTATCAAAAGGGCCGTCTTAC 59.130 47.826 0.00 0.00 0.00 2.34
2940 6078 1.734163 ATCAAAAGGGCCGTCTTACG 58.266 50.000 0.00 0.00 42.11 3.18
2941 6079 0.952010 TCAAAAGGGCCGTCTTACGC 60.952 55.000 0.00 0.00 40.91 4.42
2942 6080 2.030958 AAAAGGGCCGTCTTACGCG 61.031 57.895 3.53 3.53 40.91 6.01
2943 6081 2.720358 AAAAGGGCCGTCTTACGCGT 62.720 55.000 19.17 19.17 40.91 6.01
2944 6082 3.637926 AAGGGCCGTCTTACGCGTC 62.638 63.158 18.63 0.00 40.91 5.19
2948 6086 4.764336 CCGTCTTACGCGTCCGCA 62.764 66.667 18.63 0.00 40.91 5.69
2949 6087 3.238241 CGTCTTACGCGTCCGCAG 61.238 66.667 18.63 8.26 42.06 5.18
2964 6102 3.848272 CCGCAGGCTGATCTTTTAAAA 57.152 42.857 20.86 0.00 46.14 1.52
2965 6103 3.762779 CCGCAGGCTGATCTTTTAAAAG 58.237 45.455 20.86 19.91 46.14 2.27
2966 6104 3.440173 CCGCAGGCTGATCTTTTAAAAGA 59.560 43.478 28.07 28.07 46.14 2.52
2977 6115 4.725359 TCTTTTAAAAGATTAACCGCGCC 58.275 39.130 23.65 0.00 39.95 6.53
2978 6116 2.810028 TTAAAAGATTAACCGCGCCG 57.190 45.000 0.00 0.00 0.00 6.46
2979 6117 0.374410 TAAAAGATTAACCGCGCCGC 59.626 50.000 0.00 0.00 0.00 6.53
2991 6129 4.925576 CGCCGCGAGCCGTTAGAT 62.926 66.667 8.23 0.00 38.78 1.98
2992 6130 3.030882 GCCGCGAGCCGTTAGATC 61.031 66.667 8.23 0.00 34.35 2.75
2993 6131 2.722487 CCGCGAGCCGTTAGATCT 59.278 61.111 8.23 0.00 34.38 2.75
2994 6132 1.947013 CCGCGAGCCGTTAGATCTA 59.053 57.895 8.23 0.00 34.38 1.98
2995 6133 0.110147 CCGCGAGCCGTTAGATCTAG 60.110 60.000 8.23 0.00 34.38 2.43
2996 6134 0.726452 CGCGAGCCGTTAGATCTAGC 60.726 60.000 0.00 6.53 0.00 3.42
2997 6135 0.726452 GCGAGCCGTTAGATCTAGCG 60.726 60.000 26.53 26.53 39.07 4.26
2998 6136 0.726452 CGAGCCGTTAGATCTAGCGC 60.726 60.000 27.66 22.59 38.23 5.92
2999 6137 0.311165 GAGCCGTTAGATCTAGCGCA 59.689 55.000 27.66 0.69 38.23 6.09
3000 6138 0.962489 AGCCGTTAGATCTAGCGCAT 59.038 50.000 27.66 17.49 38.23 4.73
3001 6139 1.068194 AGCCGTTAGATCTAGCGCATC 60.068 52.381 27.66 19.32 38.23 3.91
3002 6140 1.607713 CCGTTAGATCTAGCGCATCG 58.392 55.000 27.66 14.03 38.23 3.84
3003 6141 1.197036 CCGTTAGATCTAGCGCATCGA 59.803 52.381 27.66 2.43 38.23 3.59
3004 6142 2.500888 CGTTAGATCTAGCGCATCGAG 58.499 52.381 23.24 0.59 33.42 4.04
3005 6143 2.246789 GTTAGATCTAGCGCATCGAGC 58.753 52.381 11.47 5.37 40.87 5.03
3014 6152 4.854784 GCATCGAGCGGCGTCTCA 62.855 66.667 23.75 14.75 41.80 3.27
3015 6153 2.202610 CATCGAGCGGCGTCTCAA 60.203 61.111 23.75 11.85 41.80 3.02
3016 6154 1.589993 CATCGAGCGGCGTCTCAAT 60.590 57.895 23.75 13.32 41.80 2.57
3017 6155 1.299468 ATCGAGCGGCGTCTCAATC 60.299 57.895 23.75 7.81 41.80 2.67
3018 6156 2.004808 ATCGAGCGGCGTCTCAATCA 62.005 55.000 23.75 10.23 41.80 2.57
3019 6157 1.589993 CGAGCGGCGTCTCAATCAT 60.590 57.895 23.75 0.00 33.41 2.45
3020 6158 1.148157 CGAGCGGCGTCTCAATCATT 61.148 55.000 23.75 0.00 33.41 2.57
3021 6159 0.302890 GAGCGGCGTCTCAATCATTG 59.697 55.000 20.90 0.00 33.41 2.82
3022 6160 1.297893 GCGGCGTCTCAATCATTGC 60.298 57.895 9.37 0.00 0.00 3.56
3023 6161 1.980951 GCGGCGTCTCAATCATTGCA 61.981 55.000 9.37 0.00 0.00 4.08
3024 6162 0.447406 CGGCGTCTCAATCATTGCAA 59.553 50.000 0.00 0.00 0.00 4.08
3025 6163 1.791555 CGGCGTCTCAATCATTGCAAC 60.792 52.381 0.00 0.00 0.00 4.17
3026 6164 1.199789 GGCGTCTCAATCATTGCAACA 59.800 47.619 0.00 0.00 0.00 3.33
3027 6165 2.245096 GCGTCTCAATCATTGCAACAC 58.755 47.619 0.00 0.00 0.00 3.32
3028 6166 2.350676 GCGTCTCAATCATTGCAACACA 60.351 45.455 0.00 0.00 0.00 3.72
3029 6167 3.852939 GCGTCTCAATCATTGCAACACAA 60.853 43.478 0.00 0.00 44.01 3.33
3030 6168 3.910170 CGTCTCAATCATTGCAACACAAG 59.090 43.478 0.00 0.00 42.87 3.16
3031 6169 4.555313 CGTCTCAATCATTGCAACACAAGT 60.555 41.667 0.00 0.00 42.87 3.16
3032 6170 4.913924 GTCTCAATCATTGCAACACAAGTC 59.086 41.667 0.00 0.00 42.87 3.01
3033 6171 4.823442 TCTCAATCATTGCAACACAAGTCT 59.177 37.500 0.00 0.00 42.87 3.24
3034 6172 5.300034 TCTCAATCATTGCAACACAAGTCTT 59.700 36.000 0.00 0.00 42.87 3.01
3035 6173 5.283294 TCAATCATTGCAACACAAGTCTTG 58.717 37.500 11.17 11.17 42.87 3.02
3036 6174 4.924305 ATCATTGCAACACAAGTCTTGT 57.076 36.364 12.62 12.62 46.75 3.16
3037 6175 4.717233 TCATTGCAACACAAGTCTTGTT 57.283 36.364 15.73 5.21 43.23 2.83
3042 6180 3.763097 CAACACAAGTCTTGTTGCAGA 57.237 42.857 15.73 0.00 45.36 4.26
3043 6181 4.095410 CAACACAAGTCTTGTTGCAGAA 57.905 40.909 15.73 0.00 45.36 3.02
3044 6182 4.675510 CAACACAAGTCTTGTTGCAGAAT 58.324 39.130 15.73 0.00 45.36 2.40
3045 6183 4.989279 ACACAAGTCTTGTTGCAGAATT 57.011 36.364 15.73 0.00 43.23 2.17
3046 6184 5.329035 ACACAAGTCTTGTTGCAGAATTT 57.671 34.783 15.73 0.00 43.23 1.82
3047 6185 5.104374 ACACAAGTCTTGTTGCAGAATTTG 58.896 37.500 15.73 3.54 43.23 2.32
3048 6186 5.104374 CACAAGTCTTGTTGCAGAATTTGT 58.896 37.500 15.73 0.00 43.23 2.83
3049 6187 5.577945 CACAAGTCTTGTTGCAGAATTTGTT 59.422 36.000 15.73 0.00 43.23 2.83
3050 6188 6.091169 CACAAGTCTTGTTGCAGAATTTGTTT 59.909 34.615 15.73 0.00 43.23 2.83
3051 6189 6.650390 ACAAGTCTTGTTGCAGAATTTGTTTT 59.350 30.769 12.62 0.00 42.22 2.43
3052 6190 7.173047 ACAAGTCTTGTTGCAGAATTTGTTTTT 59.827 29.630 12.62 0.00 42.22 1.94
3053 6191 7.064060 AGTCTTGTTGCAGAATTTGTTTTTG 57.936 32.000 0.00 0.00 0.00 2.44
3054 6192 6.650390 AGTCTTGTTGCAGAATTTGTTTTTGT 59.350 30.769 0.00 0.00 0.00 2.83
3055 6193 7.816995 AGTCTTGTTGCAGAATTTGTTTTTGTA 59.183 29.630 0.00 0.00 0.00 2.41
3056 6194 8.439286 GTCTTGTTGCAGAATTTGTTTTTGTAA 58.561 29.630 0.00 0.00 0.00 2.41
3057 6195 9.160496 TCTTGTTGCAGAATTTGTTTTTGTAAT 57.840 25.926 0.00 0.00 29.24 1.89
3084 6222 5.582550 AGTCTAGTTGCAGAAAAGTTTTGC 58.417 37.500 5.36 5.44 38.30 3.68
3085 6223 5.125417 AGTCTAGTTGCAGAAAAGTTTTGCA 59.875 36.000 10.26 10.26 45.28 4.08
3090 6228 4.185467 TGCAGAAAAGTTTTGCAACAGA 57.815 36.364 11.62 0.00 44.13 3.41
3091 6229 4.175516 TGCAGAAAAGTTTTGCAACAGAG 58.824 39.130 11.62 0.00 44.13 3.35
3092 6230 4.082300 TGCAGAAAAGTTTTGCAACAGAGA 60.082 37.500 11.62 0.00 44.13 3.10
3093 6231 5.045872 GCAGAAAAGTTTTGCAACAGAGAT 58.954 37.500 5.36 0.00 37.75 2.75
3094 6232 5.051240 GCAGAAAAGTTTTGCAACAGAGATG 60.051 40.000 5.36 0.00 37.75 2.90
3095 6233 6.038356 CAGAAAAGTTTTGCAACAGAGATGT 58.962 36.000 5.36 0.00 35.05 3.06
3096 6234 6.532657 CAGAAAAGTTTTGCAACAGAGATGTT 59.467 34.615 5.36 0.00 35.05 2.71
3104 6242 3.570926 CAACAGAGATGTTGCTGCAAT 57.429 42.857 19.11 2.86 41.93 3.56
3105 6243 3.909430 CAACAGAGATGTTGCTGCAATT 58.091 40.909 19.11 9.36 41.93 2.32
3106 6244 4.304110 CAACAGAGATGTTGCTGCAATTT 58.696 39.130 19.11 8.98 41.93 1.82
3107 6245 4.595762 ACAGAGATGTTGCTGCAATTTT 57.404 36.364 19.11 6.37 35.57 1.82
3108 6246 4.952460 ACAGAGATGTTGCTGCAATTTTT 58.048 34.783 19.11 4.41 35.57 1.94
3166 6304 2.452600 ACAAAGGCCTTGTTCCAGAA 57.547 45.000 21.33 0.00 46.49 3.02
3167 6305 2.962859 ACAAAGGCCTTGTTCCAGAAT 58.037 42.857 21.33 0.00 46.49 2.40
3168 6306 3.308401 ACAAAGGCCTTGTTCCAGAATT 58.692 40.909 21.33 0.00 46.49 2.17
3169 6307 3.711190 ACAAAGGCCTTGTTCCAGAATTT 59.289 39.130 21.33 0.00 46.49 1.82
3170 6308 4.164030 ACAAAGGCCTTGTTCCAGAATTTT 59.836 37.500 21.33 0.00 46.49 1.82
3171 6309 5.125356 CAAAGGCCTTGTTCCAGAATTTTT 58.875 37.500 21.33 0.00 0.00 1.94
3194 6332 8.979817 TTTTTACAAAATTTTCGCAACATAGC 57.020 26.923 0.00 0.00 0.00 2.97
3195 6333 7.938563 TTTACAAAATTTTCGCAACATAGCT 57.061 28.000 0.00 0.00 0.00 3.32
3196 6334 7.561237 TTACAAAATTTTCGCAACATAGCTC 57.439 32.000 0.00 0.00 0.00 4.09
3197 6335 5.772521 ACAAAATTTTCGCAACATAGCTCT 58.227 33.333 0.00 0.00 0.00 4.09
3198 6336 6.215845 ACAAAATTTTCGCAACATAGCTCTT 58.784 32.000 0.00 0.00 0.00 2.85
3199 6337 6.144402 ACAAAATTTTCGCAACATAGCTCTTG 59.856 34.615 0.00 0.00 0.00 3.02
3200 6338 2.900122 TTTCGCAACATAGCTCTTGC 57.100 45.000 11.80 11.80 39.57 4.01
3217 6355 7.596749 GCTCTTGCTACAGAACTATTTTACA 57.403 36.000 0.00 0.00 36.03 2.41
3218 6356 8.029642 GCTCTTGCTACAGAACTATTTTACAA 57.970 34.615 0.00 0.00 36.03 2.41
3219 6357 7.958025 GCTCTTGCTACAGAACTATTTTACAAC 59.042 37.037 0.00 0.00 36.03 3.32
3220 6358 8.896320 TCTTGCTACAGAACTATTTTACAACA 57.104 30.769 0.00 0.00 0.00 3.33
3221 6359 9.502091 TCTTGCTACAGAACTATTTTACAACAT 57.498 29.630 0.00 0.00 0.00 2.71
3224 6362 8.879759 TGCTACAGAACTATTTTACAACATAGC 58.120 33.333 0.00 0.00 0.00 2.97
3225 6363 9.099454 GCTACAGAACTATTTTACAACATAGCT 57.901 33.333 0.00 0.00 0.00 3.32
3228 6366 9.726438 ACAGAACTATTTTACAACATAGCTCTT 57.274 29.630 0.00 0.00 29.60 2.85
3229 6367 9.979270 CAGAACTATTTTACAACATAGCTCTTG 57.021 33.333 0.00 0.00 29.60 3.02
3230 6368 9.726438 AGAACTATTTTACAACATAGCTCTTGT 57.274 29.630 0.00 0.00 28.20 3.16
3236 6374 3.902261 CAACATAGCTCTTGTTGCACA 57.098 42.857 22.27 0.00 45.10 4.57
3237 6375 4.227512 CAACATAGCTCTTGTTGCACAA 57.772 40.909 22.27 0.00 45.10 3.33
3238 6376 4.609947 CAACATAGCTCTTGTTGCACAAA 58.390 39.130 22.27 0.00 45.10 2.83
3239 6377 4.916983 ACATAGCTCTTGTTGCACAAAA 57.083 36.364 0.00 0.00 37.69 2.44
3240 6378 4.863491 ACATAGCTCTTGTTGCACAAAAG 58.137 39.130 0.00 0.00 37.69 2.27
3244 6382 2.195922 CTCTTGTTGCACAAAAGCACC 58.804 47.619 0.00 0.00 45.61 5.01
3245 6383 1.134848 TCTTGTTGCACAAAAGCACCC 60.135 47.619 0.00 0.00 45.61 4.61
3246 6384 0.459237 TTGTTGCACAAAAGCACCCG 60.459 50.000 0.00 0.00 45.61 5.28
3247 6385 1.315981 TGTTGCACAAAAGCACCCGA 61.316 50.000 0.00 0.00 45.61 5.14
3248 6386 0.594796 GTTGCACAAAAGCACCCGAG 60.595 55.000 0.00 0.00 45.61 4.63
3249 6387 0.749818 TTGCACAAAAGCACCCGAGA 60.750 50.000 0.00 0.00 45.61 4.04
3250 6388 0.749818 TGCACAAAAGCACCCGAGAA 60.750 50.000 0.00 0.00 40.11 2.87
3251 6389 0.040067 GCACAAAAGCACCCGAGAAG 60.040 55.000 0.00 0.00 0.00 2.85
3252 6390 1.593196 CACAAAAGCACCCGAGAAGA 58.407 50.000 0.00 0.00 0.00 2.87
3253 6391 1.532868 CACAAAAGCACCCGAGAAGAG 59.467 52.381 0.00 0.00 0.00 2.85
3254 6392 1.416401 ACAAAAGCACCCGAGAAGAGA 59.584 47.619 0.00 0.00 0.00 3.10
3255 6393 2.072298 CAAAAGCACCCGAGAAGAGAG 58.928 52.381 0.00 0.00 0.00 3.20
3256 6394 0.036858 AAAGCACCCGAGAAGAGAGC 60.037 55.000 0.00 0.00 0.00 4.09
3257 6395 1.188219 AAGCACCCGAGAAGAGAGCA 61.188 55.000 0.00 0.00 0.00 4.26
3258 6396 1.446966 GCACCCGAGAAGAGAGCAC 60.447 63.158 0.00 0.00 0.00 4.40
3259 6397 1.216710 CACCCGAGAAGAGAGCACC 59.783 63.158 0.00 0.00 0.00 5.01
3260 6398 2.344203 ACCCGAGAAGAGAGCACCG 61.344 63.158 0.00 0.00 0.00 4.94
3261 6399 2.344203 CCCGAGAAGAGAGCACCGT 61.344 63.158 0.00 0.00 0.00 4.83
3262 6400 1.153939 CCGAGAAGAGAGCACCGTG 60.154 63.158 0.00 0.00 0.00 4.94
3263 6401 1.587043 CCGAGAAGAGAGCACCGTGA 61.587 60.000 1.65 0.00 0.00 4.35
3264 6402 0.179176 CGAGAAGAGAGCACCGTGAG 60.179 60.000 1.65 0.00 0.00 3.51
3265 6403 1.169577 GAGAAGAGAGCACCGTGAGA 58.830 55.000 1.65 0.00 0.00 3.27
3266 6404 1.132262 GAGAAGAGAGCACCGTGAGAG 59.868 57.143 1.65 0.00 0.00 3.20
3267 6405 0.457681 GAAGAGAGCACCGTGAGAGC 60.458 60.000 1.65 0.00 0.00 4.09
3268 6406 0.897863 AAGAGAGCACCGTGAGAGCT 60.898 55.000 1.65 0.00 43.23 4.09
3269 6407 1.153862 GAGAGCACCGTGAGAGCTG 60.154 63.158 1.65 0.00 41.22 4.24
3270 6408 2.125753 GAGCACCGTGAGAGCTGG 60.126 66.667 1.65 0.00 41.22 4.85
3271 6409 2.919856 AGCACCGTGAGAGCTGGT 60.920 61.111 1.65 0.00 40.01 4.00
3272 6410 2.031163 GCACCGTGAGAGCTGGTT 59.969 61.111 1.65 0.00 32.48 3.67
3273 6411 1.598130 GCACCGTGAGAGCTGGTTT 60.598 57.895 1.65 0.00 32.48 3.27
3274 6412 1.845809 GCACCGTGAGAGCTGGTTTG 61.846 60.000 1.65 0.00 32.48 2.93
3275 6413 0.532862 CACCGTGAGAGCTGGTTTGT 60.533 55.000 0.00 0.00 32.48 2.83
3276 6414 0.180406 ACCGTGAGAGCTGGTTTGTT 59.820 50.000 0.00 0.00 29.87 2.83
3277 6415 0.588252 CCGTGAGAGCTGGTTTGTTG 59.412 55.000 0.00 0.00 0.00 3.33
3278 6416 1.581934 CGTGAGAGCTGGTTTGTTGA 58.418 50.000 0.00 0.00 0.00 3.18
3279 6417 1.528586 CGTGAGAGCTGGTTTGTTGAG 59.471 52.381 0.00 0.00 0.00 3.02
3280 6418 2.803133 CGTGAGAGCTGGTTTGTTGAGA 60.803 50.000 0.00 0.00 0.00 3.27
3281 6419 2.805099 GTGAGAGCTGGTTTGTTGAGAG 59.195 50.000 0.00 0.00 0.00 3.20
3282 6420 2.700371 TGAGAGCTGGTTTGTTGAGAGA 59.300 45.455 0.00 0.00 0.00 3.10
3283 6421 3.244009 TGAGAGCTGGTTTGTTGAGAGAG 60.244 47.826 0.00 0.00 0.00 3.20
3284 6422 2.968574 AGAGCTGGTTTGTTGAGAGAGA 59.031 45.455 0.00 0.00 0.00 3.10
3285 6423 3.006752 AGAGCTGGTTTGTTGAGAGAGAG 59.993 47.826 0.00 0.00 0.00 3.20
3286 6424 2.968574 AGCTGGTTTGTTGAGAGAGAGA 59.031 45.455 0.00 0.00 0.00 3.10
3287 6425 3.006752 AGCTGGTTTGTTGAGAGAGAGAG 59.993 47.826 0.00 0.00 0.00 3.20
3288 6426 3.006323 GCTGGTTTGTTGAGAGAGAGAGA 59.994 47.826 0.00 0.00 0.00 3.10
3289 6427 4.808558 CTGGTTTGTTGAGAGAGAGAGAG 58.191 47.826 0.00 0.00 0.00 3.20
3290 6428 4.474394 TGGTTTGTTGAGAGAGAGAGAGA 58.526 43.478 0.00 0.00 0.00 3.10
3291 6429 4.522405 TGGTTTGTTGAGAGAGAGAGAGAG 59.478 45.833 0.00 0.00 0.00 3.20
3292 6430 4.764823 GGTTTGTTGAGAGAGAGAGAGAGA 59.235 45.833 0.00 0.00 0.00 3.10
3293 6431 5.106157 GGTTTGTTGAGAGAGAGAGAGAGAG 60.106 48.000 0.00 0.00 0.00 3.20
3294 6432 5.497464 TTGTTGAGAGAGAGAGAGAGAGA 57.503 43.478 0.00 0.00 0.00 3.10
3295 6433 5.089970 TGTTGAGAGAGAGAGAGAGAGAG 57.910 47.826 0.00 0.00 0.00 3.20
3296 6434 4.777366 TGTTGAGAGAGAGAGAGAGAGAGA 59.223 45.833 0.00 0.00 0.00 3.10
3297 6435 5.105187 TGTTGAGAGAGAGAGAGAGAGAGAG 60.105 48.000 0.00 0.00 0.00 3.20
3298 6436 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
3299 6437 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
3300 6438 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3301 6439 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3302 6440 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3303 6441 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3304 6442 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3305 6443 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3654 6792 3.847671 GATAGGTGGGAAGGAGAAAGG 57.152 52.381 0.00 0.00 0.00 3.11
3655 6793 1.966845 TAGGTGGGAAGGAGAAAGGG 58.033 55.000 0.00 0.00 0.00 3.95
3656 6794 0.846870 AGGTGGGAAGGAGAAAGGGG 60.847 60.000 0.00 0.00 0.00 4.79
3657 6795 1.000771 GTGGGAAGGAGAAAGGGGC 60.001 63.158 0.00 0.00 0.00 5.80
3658 6796 2.238701 TGGGAAGGAGAAAGGGGCC 61.239 63.158 0.00 0.00 0.00 5.80
3659 6797 2.272471 GGAAGGAGAAAGGGGCCG 59.728 66.667 0.00 0.00 0.00 6.13
3660 6798 2.438614 GAAGGAGAAAGGGGCCGC 60.439 66.667 12.88 12.88 0.00 6.53
3661 6799 3.256960 AAGGAGAAAGGGGCCGCA 61.257 61.111 23.39 0.00 0.00 5.69
3662 6800 3.273788 AAGGAGAAAGGGGCCGCAG 62.274 63.158 23.39 0.00 0.00 5.18
3686 6824 3.461773 GCCACGGGAGCTCAGCTA 61.462 66.667 17.19 0.00 39.88 3.32
3687 6825 2.811101 CCACGGGAGCTCAGCTAG 59.189 66.667 17.19 0.00 39.88 3.42
3688 6826 2.790791 CCACGGGAGCTCAGCTAGG 61.791 68.421 17.19 6.56 39.88 3.02
3689 6827 2.443016 ACGGGAGCTCAGCTAGGG 60.443 66.667 17.19 0.00 39.88 3.53
3690 6828 3.230245 CGGGAGCTCAGCTAGGGG 61.230 72.222 17.19 0.00 39.88 4.79
3691 6829 2.846754 GGGAGCTCAGCTAGGGGG 60.847 72.222 17.19 0.00 39.88 5.40
3692 6830 2.041405 GGAGCTCAGCTAGGGGGT 60.041 66.667 17.19 0.00 39.88 4.95
3693 6831 2.439104 GGAGCTCAGCTAGGGGGTG 61.439 68.421 17.19 0.00 39.88 4.61
3694 6832 2.366167 AGCTCAGCTAGGGGGTGG 60.366 66.667 0.00 0.00 43.01 4.61
3695 6833 3.483869 GCTCAGCTAGGGGGTGGG 61.484 72.222 0.00 0.00 45.89 4.61
3696 6834 2.770048 CTCAGCTAGGGGGTGGGG 60.770 72.222 0.00 0.00 43.01 4.96
3697 6835 4.431524 TCAGCTAGGGGGTGGGGG 62.432 72.222 0.00 0.00 43.01 5.40
3698 6836 4.760220 CAGCTAGGGGGTGGGGGT 62.760 72.222 0.00 0.00 39.52 4.95
3699 6837 4.760220 AGCTAGGGGGTGGGGGTG 62.760 72.222 0.00 0.00 0.00 4.61
3718 6856 3.777075 GGGGGAGAGGGAGAGAGA 58.223 66.667 0.00 0.00 0.00 3.10
3719 6857 1.541672 GGGGGAGAGGGAGAGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
3720 6858 0.996762 GGGGGAGAGGGAGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
3721 6859 0.478507 GGGGAGAGGGAGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
3722 6860 1.222567 GGGAGAGGGAGAGAGAGAGT 58.777 60.000 0.00 0.00 0.00 3.24
3723 6861 1.569072 GGGAGAGGGAGAGAGAGAGTT 59.431 57.143 0.00 0.00 0.00 3.01
3724 6862 2.781174 GGGAGAGGGAGAGAGAGAGTTA 59.219 54.545 0.00 0.00 0.00 2.24
3725 6863 3.203487 GGGAGAGGGAGAGAGAGAGTTAA 59.797 52.174 0.00 0.00 0.00 2.01
3726 6864 4.461198 GGAGAGGGAGAGAGAGAGTTAAG 58.539 52.174 0.00 0.00 0.00 1.85
3727 6865 4.461198 GAGAGGGAGAGAGAGAGTTAAGG 58.539 52.174 0.00 0.00 0.00 2.69
3728 6866 4.116113 AGAGGGAGAGAGAGAGTTAAGGA 58.884 47.826 0.00 0.00 0.00 3.36
3729 6867 4.166144 AGAGGGAGAGAGAGAGTTAAGGAG 59.834 50.000 0.00 0.00 0.00 3.69
3730 6868 4.116113 AGGGAGAGAGAGAGTTAAGGAGA 58.884 47.826 0.00 0.00 0.00 3.71
3731 6869 4.166144 AGGGAGAGAGAGAGTTAAGGAGAG 59.834 50.000 0.00 0.00 0.00 3.20
3732 6870 4.165372 GGGAGAGAGAGAGTTAAGGAGAGA 59.835 50.000 0.00 0.00 0.00 3.10
3733 6871 5.368989 GGAGAGAGAGAGTTAAGGAGAGAG 58.631 50.000 0.00 0.00 0.00 3.20
3734 6872 5.368989 GAGAGAGAGAGTTAAGGAGAGAGG 58.631 50.000 0.00 0.00 0.00 3.69
3735 6873 5.036916 AGAGAGAGAGTTAAGGAGAGAGGA 58.963 45.833 0.00 0.00 0.00 3.71
3736 6874 5.131142 AGAGAGAGAGTTAAGGAGAGAGGAG 59.869 48.000 0.00 0.00 0.00 3.69
3737 6875 4.166144 AGAGAGAGTTAAGGAGAGAGGAGG 59.834 50.000 0.00 0.00 0.00 4.30
3738 6876 4.116113 AGAGAGTTAAGGAGAGAGGAGGA 58.884 47.826 0.00 0.00 0.00 3.71
3739 6877 4.542525 AGAGAGTTAAGGAGAGAGGAGGAA 59.457 45.833 0.00 0.00 0.00 3.36
3740 6878 5.015817 AGAGAGTTAAGGAGAGAGGAGGAAA 59.984 44.000 0.00 0.00 0.00 3.13
3741 6879 5.269189 AGAGTTAAGGAGAGAGGAGGAAAG 58.731 45.833 0.00 0.00 0.00 2.62
3742 6880 4.358214 AGTTAAGGAGAGAGGAGGAAAGG 58.642 47.826 0.00 0.00 0.00 3.11
3743 6881 4.046103 AGTTAAGGAGAGAGGAGGAAAGGA 59.954 45.833 0.00 0.00 0.00 3.36
3744 6882 2.846665 AGGAGAGAGGAGGAAAGGAG 57.153 55.000 0.00 0.00 0.00 3.69
3745 6883 2.293246 AGGAGAGAGGAGGAAAGGAGA 58.707 52.381 0.00 0.00 0.00 3.71
3746 6884 2.657459 AGGAGAGAGGAGGAAAGGAGAA 59.343 50.000 0.00 0.00 0.00 2.87
3747 6885 3.078305 AGGAGAGAGGAGGAAAGGAGAAA 59.922 47.826 0.00 0.00 0.00 2.52
3748 6886 3.450817 GGAGAGAGGAGGAAAGGAGAAAG 59.549 52.174 0.00 0.00 0.00 2.62
3749 6887 3.449918 AGAGAGGAGGAAAGGAGAAAGG 58.550 50.000 0.00 0.00 0.00 3.11
3750 6888 2.503765 GAGAGGAGGAAAGGAGAAAGGG 59.496 54.545 0.00 0.00 0.00 3.95
3751 6889 1.562008 GAGGAGGAAAGGAGAAAGGGG 59.438 57.143 0.00 0.00 0.00 4.79
3752 6890 0.033991 GGAGGAAAGGAGAAAGGGGC 60.034 60.000 0.00 0.00 0.00 5.80
3753 6891 0.995803 GAGGAAAGGAGAAAGGGGCT 59.004 55.000 0.00 0.00 0.00 5.19
3754 6892 0.701147 AGGAAAGGAGAAAGGGGCTG 59.299 55.000 0.00 0.00 0.00 4.85
3755 6893 0.323816 GGAAAGGAGAAAGGGGCTGG 60.324 60.000 0.00 0.00 0.00 4.85
3756 6894 0.967887 GAAAGGAGAAAGGGGCTGGC 60.968 60.000 0.00 0.00 0.00 4.85
3757 6895 2.771328 AAAGGAGAAAGGGGCTGGCG 62.771 60.000 0.00 0.00 0.00 5.69
3758 6896 4.803908 GGAGAAAGGGGCTGGCGG 62.804 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.988622 ACTAGTATACTGTATGATCTCGGC 57.011 41.667 15.90 0.00 0.00 5.54
41 42 6.782986 TCCTTGCTAATCGGGTACTAGTATA 58.217 40.000 5.75 0.00 0.00 1.47
42 43 5.638133 TCCTTGCTAATCGGGTACTAGTAT 58.362 41.667 5.75 0.00 0.00 2.12
48 49 2.367567 TCCATCCTTGCTAATCGGGTAC 59.632 50.000 0.00 0.00 0.00 3.34
89 93 1.852895 GCTATCTTGAACACCTACGCG 59.147 52.381 3.53 3.53 0.00 6.01
90 94 2.603560 GTGCTATCTTGAACACCTACGC 59.396 50.000 0.00 0.00 0.00 4.42
91 95 3.845178 TGTGCTATCTTGAACACCTACG 58.155 45.455 0.00 0.00 31.98 3.51
92 96 4.034510 GCATGTGCTATCTTGAACACCTAC 59.965 45.833 0.00 0.00 38.21 3.18
154 160 0.530744 CCTTGCAGCTGGAGTACGTA 59.469 55.000 17.12 0.00 0.00 3.57
180 186 1.167851 GGTGTGCATGCATGTGTACT 58.832 50.000 25.64 0.00 35.96 2.73
187 193 3.126879 CCGTCGGTGTGCATGCAT 61.127 61.111 25.64 0.00 0.00 3.96
246 252 5.022282 TGGTGGATATATCATATGCGTGG 57.978 43.478 14.60 0.00 0.00 4.94
247 253 7.496920 AGAAATGGTGGATATATCATATGCGTG 59.503 37.037 14.60 0.00 0.00 5.34
256 262 6.059787 AGGCAGAGAAATGGTGGATATATC 57.940 41.667 3.96 3.96 0.00 1.63
257 263 5.549228 TGAGGCAGAGAAATGGTGGATATAT 59.451 40.000 0.00 0.00 0.00 0.86
258 264 4.907269 TGAGGCAGAGAAATGGTGGATATA 59.093 41.667 0.00 0.00 0.00 0.86
259 265 3.718434 TGAGGCAGAGAAATGGTGGATAT 59.282 43.478 0.00 0.00 0.00 1.63
260 266 3.114606 TGAGGCAGAGAAATGGTGGATA 58.885 45.455 0.00 0.00 0.00 2.59
421 427 5.827666 TGCATGCTGACATAAATGATTGAG 58.172 37.500 20.33 0.00 33.67 3.02
536 1638 7.225145 TCTCAATTCTTTCGTTTTTCCGACTTA 59.775 33.333 0.00 0.00 36.42 2.24
539 1641 5.744490 TCTCAATTCTTTCGTTTTTCCGAC 58.256 37.500 0.00 0.00 36.42 4.79
541 1643 6.370593 TGATCTCAATTCTTTCGTTTTTCCG 58.629 36.000 0.00 0.00 0.00 4.30
550 1652 8.964476 TGTATAGGGTTGATCTCAATTCTTTC 57.036 34.615 0.00 0.00 38.24 2.62
557 1659 5.144832 TCCGATGTATAGGGTTGATCTCAA 58.855 41.667 0.00 0.00 0.00 3.02
566 1668 3.240302 CCTCCTTTCCGATGTATAGGGT 58.760 50.000 0.00 0.00 0.00 4.34
569 1671 4.153411 ACTCCCTCCTTTCCGATGTATAG 58.847 47.826 0.00 0.00 0.00 1.31
574 1676 1.413077 GGTACTCCCTCCTTTCCGATG 59.587 57.143 0.00 0.00 0.00 3.84
813 3504 3.879892 TCATCACAATTCACAAACGTGGA 59.120 39.130 0.00 0.00 34.98 4.02
887 3652 4.248058 GGTTTGGCTTTCATTTGAGATGG 58.752 43.478 0.00 0.00 0.00 3.51
893 3658 1.794512 CCGGGTTTGGCTTTCATTTG 58.205 50.000 0.00 0.00 0.00 2.32
937 3710 5.103643 AGGGTCACTCACCTATATGTACTCA 60.104 44.000 0.00 0.00 45.95 3.41
938 3711 5.386924 AGGGTCACTCACCTATATGTACTC 58.613 45.833 0.00 0.00 45.95 2.59
964 3749 1.663702 CGGAGACTGGCGAACGTTT 60.664 57.895 0.46 0.00 0.00 3.60
974 3759 0.528470 GGAGTTGGAGACGGAGACTG 59.472 60.000 0.00 0.00 29.49 3.51
982 3767 0.250338 GGTGGTGTGGAGTTGGAGAC 60.250 60.000 0.00 0.00 0.00 3.36
1121 3910 3.940221 AGTAGTAGAAGACGACGAAGCAT 59.060 43.478 0.00 0.00 38.60 3.79
1421 4210 3.430862 GCGTTGAAGATGCCGCCA 61.431 61.111 0.00 0.00 40.25 5.69
1934 4730 2.981909 TCGACGACCGTTCTGGCT 60.982 61.111 0.00 0.00 43.94 4.75
1940 4757 3.886329 GAAGCCGTCGACGACCGTT 62.886 63.158 37.65 23.26 43.02 4.44
1954 4771 4.415332 TCGTGTCGCGGAGGAAGC 62.415 66.667 6.13 0.00 41.72 3.86
2273 5108 0.320771 ACAGCGACACCATCACCTTC 60.321 55.000 0.00 0.00 0.00 3.46
2569 5404 1.704007 CCTCCTCTTGATCCTGGCCC 61.704 65.000 0.00 0.00 0.00 5.80
2618 5453 2.000447 GGCACACGGTTGATTACTCTC 59.000 52.381 0.00 0.00 0.00 3.20
2619 5454 1.623811 AGGCACACGGTTGATTACTCT 59.376 47.619 0.00 0.00 0.00 3.24
2627 5462 0.677731 ATCCATCAGGCACACGGTTG 60.678 55.000 0.00 0.00 33.74 3.77
2628 5463 0.677731 CATCCATCAGGCACACGGTT 60.678 55.000 0.00 0.00 33.74 4.44
2639 5474 5.818887 TCTTTCTTTCACCATCATCCATCA 58.181 37.500 0.00 0.00 0.00 3.07
2640 5475 6.735145 GCATCTTTCTTTCACCATCATCCATC 60.735 42.308 0.00 0.00 0.00 3.51
2641 5476 5.068723 GCATCTTTCTTTCACCATCATCCAT 59.931 40.000 0.00 0.00 0.00 3.41
2642 5477 4.400251 GCATCTTTCTTTCACCATCATCCA 59.600 41.667 0.00 0.00 0.00 3.41
2643 5478 4.400251 TGCATCTTTCTTTCACCATCATCC 59.600 41.667 0.00 0.00 0.00 3.51
2644 5479 5.571784 TGCATCTTTCTTTCACCATCATC 57.428 39.130 0.00 0.00 0.00 2.92
2645 5480 5.163447 CCATGCATCTTTCTTTCACCATCAT 60.163 40.000 0.00 0.00 0.00 2.45
2741 5583 5.164177 CGTTCAACAGTTCGACACTAGATTC 60.164 44.000 0.00 0.00 32.76 2.52
2826 5677 5.494724 TGATACGGAGTGAGTACTAGTTGT 58.505 41.667 0.00 0.00 45.73 3.32
2852 5706 8.865590 TTTTAAGGCAAAATTGAGACACTTAC 57.134 30.769 0.00 0.00 31.05 2.34
2880 6018 8.682936 ACAAATTCATACAAAGTTGAGAGACT 57.317 30.769 4.11 0.00 36.57 3.24
2931 6069 4.764336 TGCGGACGCGTAAGACGG 62.764 66.667 13.97 5.18 42.82 4.79
2932 6070 3.238241 CTGCGGACGCGTAAGACG 61.238 66.667 13.97 16.05 45.88 4.18
2933 6071 2.879462 CCTGCGGACGCGTAAGAC 60.879 66.667 13.97 0.00 45.51 3.01
2934 6072 4.789075 GCCTGCGGACGCGTAAGA 62.789 66.667 13.97 0.00 45.51 2.10
2935 6073 4.796231 AGCCTGCGGACGCGTAAG 62.796 66.667 13.97 10.81 45.51 2.34
2940 6078 4.521062 AGATCAGCCTGCGGACGC 62.521 66.667 10.13 10.13 42.35 5.19
2941 6079 1.021390 AAAAGATCAGCCTGCGGACG 61.021 55.000 0.00 0.00 0.00 4.79
2942 6080 2.024176 TAAAAGATCAGCCTGCGGAC 57.976 50.000 0.00 0.00 0.00 4.79
2943 6081 2.779755 TTAAAAGATCAGCCTGCGGA 57.220 45.000 0.00 0.00 0.00 5.54
2944 6082 3.440173 TCTTTTAAAAGATCAGCCTGCGG 59.560 43.478 23.65 0.00 39.95 5.69
2945 6083 4.685169 TCTTTTAAAAGATCAGCCTGCG 57.315 40.909 23.65 0.00 39.95 5.18
2956 6094 3.540738 CGGCGCGGTTAATCTTTTAAAAG 59.459 43.478 19.91 19.91 37.36 2.27
2957 6095 3.490399 CGGCGCGGTTAATCTTTTAAAA 58.510 40.909 8.83 0.00 0.00 1.52
2958 6096 2.728535 GCGGCGCGGTTAATCTTTTAAA 60.729 45.455 19.09 0.00 0.00 1.52
2959 6097 1.202054 GCGGCGCGGTTAATCTTTTAA 60.202 47.619 19.09 0.00 0.00 1.52
2960 6098 0.374410 GCGGCGCGGTTAATCTTTTA 59.626 50.000 19.09 0.00 0.00 1.52
2961 6099 1.135939 GCGGCGCGGTTAATCTTTT 59.864 52.632 19.09 0.00 0.00 2.27
2962 6100 2.789249 GCGGCGCGGTTAATCTTT 59.211 55.556 19.09 0.00 0.00 2.52
2975 6113 2.126417 TAGATCTAACGGCTCGCGGC 62.126 60.000 6.13 8.86 40.90 6.53
2976 6114 0.110147 CTAGATCTAACGGCTCGCGG 60.110 60.000 6.13 0.00 0.00 6.46
2977 6115 0.726452 GCTAGATCTAACGGCTCGCG 60.726 60.000 0.00 0.00 0.00 5.87
2978 6116 0.726452 CGCTAGATCTAACGGCTCGC 60.726 60.000 16.13 7.57 0.00 5.03
2979 6117 0.726452 GCGCTAGATCTAACGGCTCG 60.726 60.000 23.09 11.74 0.00 5.03
2980 6118 0.311165 TGCGCTAGATCTAACGGCTC 59.689 55.000 23.09 10.62 0.00 4.70
2981 6119 0.962489 ATGCGCTAGATCTAACGGCT 59.038 50.000 23.09 6.59 0.00 5.52
2982 6120 1.341606 GATGCGCTAGATCTAACGGC 58.658 55.000 23.09 16.64 0.00 5.68
2983 6121 1.197036 TCGATGCGCTAGATCTAACGG 59.803 52.381 23.09 9.63 0.00 4.44
2984 6122 2.500888 CTCGATGCGCTAGATCTAACG 58.499 52.381 18.92 18.92 0.00 3.18
2985 6123 2.246789 GCTCGATGCGCTAGATCTAAC 58.753 52.381 9.73 0.00 0.00 2.34
2986 6124 2.620779 GCTCGATGCGCTAGATCTAA 57.379 50.000 9.73 0.00 0.00 2.10
2997 6135 4.854784 TGAGACGCCGCTCGATGC 62.855 66.667 2.25 0.00 41.67 3.91
2998 6136 1.543941 GATTGAGACGCCGCTCGATG 61.544 60.000 13.55 0.00 38.76 3.84
2999 6137 1.299468 GATTGAGACGCCGCTCGAT 60.299 57.895 9.92 9.92 40.81 3.59
3000 6138 2.004808 ATGATTGAGACGCCGCTCGA 62.005 55.000 2.25 1.87 41.67 4.04
3001 6139 1.148157 AATGATTGAGACGCCGCTCG 61.148 55.000 4.56 0.00 45.38 5.03
3002 6140 0.302890 CAATGATTGAGACGCCGCTC 59.697 55.000 0.00 2.27 35.46 5.03
3003 6141 1.709147 GCAATGATTGAGACGCCGCT 61.709 55.000 9.76 0.00 0.00 5.52
3004 6142 1.297893 GCAATGATTGAGACGCCGC 60.298 57.895 9.76 0.00 0.00 6.53
3005 6143 0.447406 TTGCAATGATTGAGACGCCG 59.553 50.000 9.76 0.00 0.00 6.46
3006 6144 1.199789 TGTTGCAATGATTGAGACGCC 59.800 47.619 9.76 0.00 0.00 5.68
3007 6145 2.245096 GTGTTGCAATGATTGAGACGC 58.755 47.619 9.76 8.93 0.00 5.19
3008 6146 3.541071 TGTGTTGCAATGATTGAGACG 57.459 42.857 9.76 0.00 0.00 4.18
3009 6147 4.863491 ACTTGTGTTGCAATGATTGAGAC 58.137 39.130 9.76 6.85 36.36 3.36
3010 6148 4.823442 AGACTTGTGTTGCAATGATTGAGA 59.177 37.500 9.76 0.00 36.36 3.27
3011 6149 5.117355 AGACTTGTGTTGCAATGATTGAG 57.883 39.130 9.76 0.00 36.36 3.02
3012 6150 5.163530 ACAAGACTTGTGTTGCAATGATTGA 60.164 36.000 19.96 0.00 43.48 2.57
3013 6151 5.045215 ACAAGACTTGTGTTGCAATGATTG 58.955 37.500 19.96 0.00 43.48 2.67
3014 6152 5.266733 ACAAGACTTGTGTTGCAATGATT 57.733 34.783 19.96 0.00 43.48 2.57
3015 6153 4.924305 ACAAGACTTGTGTTGCAATGAT 57.076 36.364 19.96 0.00 43.48 2.45
3016 6154 4.422840 CAACAAGACTTGTGTTGCAATGA 58.577 39.130 21.24 0.00 46.63 2.57
3017 6155 4.765281 CAACAAGACTTGTGTTGCAATG 57.235 40.909 21.24 10.13 46.63 2.82
3023 6161 4.989279 ATTCTGCAACAAGACTTGTGTT 57.011 36.364 21.24 4.12 44.59 3.32
3024 6162 4.989279 AATTCTGCAACAAGACTTGTGT 57.011 36.364 21.24 9.03 44.59 3.72
3025 6163 5.104374 ACAAATTCTGCAACAAGACTTGTG 58.896 37.500 21.24 15.38 44.59 3.33
3027 6165 6.651755 AAACAAATTCTGCAACAAGACTTG 57.348 33.333 13.77 13.77 0.00 3.16
3028 6166 7.173047 ACAAAAACAAATTCTGCAACAAGACTT 59.827 29.630 0.00 0.00 0.00 3.01
3029 6167 6.650390 ACAAAAACAAATTCTGCAACAAGACT 59.350 30.769 0.00 0.00 0.00 3.24
3030 6168 6.830736 ACAAAAACAAATTCTGCAACAAGAC 58.169 32.000 0.00 0.00 0.00 3.01
3031 6169 8.539770 TTACAAAAACAAATTCTGCAACAAGA 57.460 26.923 0.00 0.00 0.00 3.02
3058 6196 7.862873 GCAAAACTTTTCTGCAACTAGACTAAT 59.137 33.333 0.00 0.00 36.09 1.73
3059 6197 7.148154 TGCAAAACTTTTCTGCAACTAGACTAA 60.148 33.333 0.00 0.00 42.84 2.24
3060 6198 6.317642 TGCAAAACTTTTCTGCAACTAGACTA 59.682 34.615 0.00 0.00 42.84 2.59
3061 6199 5.125417 TGCAAAACTTTTCTGCAACTAGACT 59.875 36.000 0.00 0.00 42.84 3.24
3062 6200 5.339990 TGCAAAACTTTTCTGCAACTAGAC 58.660 37.500 0.00 0.00 42.84 2.59
3063 6201 5.574891 TGCAAAACTTTTCTGCAACTAGA 57.425 34.783 0.00 0.00 42.84 2.43
3069 6207 4.082300 TCTCTGTTGCAAAACTTTTCTGCA 60.082 37.500 0.00 0.00 44.04 4.41
3070 6208 4.423732 TCTCTGTTGCAAAACTTTTCTGC 58.576 39.130 0.00 0.00 36.60 4.26
3071 6209 6.038356 ACATCTCTGTTGCAAAACTTTTCTG 58.962 36.000 0.00 0.00 28.70 3.02
3072 6210 6.212888 ACATCTCTGTTGCAAAACTTTTCT 57.787 33.333 0.00 0.00 28.70 2.52
3073 6211 6.892310 AACATCTCTGTTGCAAAACTTTTC 57.108 33.333 0.00 0.00 43.92 2.29
3085 6223 4.595762 AAATTGCAGCAACATCTCTGTT 57.404 36.364 10.85 0.00 46.54 3.16
3086 6224 4.595762 AAAATTGCAGCAACATCTCTGT 57.404 36.364 10.85 0.00 37.12 3.41
3148 6286 4.341366 AAATTCTGGAACAAGGCCTTTG 57.659 40.909 17.61 14.05 38.70 2.77
3149 6287 5.372343 AAAAATTCTGGAACAAGGCCTTT 57.628 34.783 17.61 1.07 38.70 3.11
3169 6307 8.821894 AGCTATGTTGCGAAAATTTTGTAAAAA 58.178 25.926 8.47 0.00 38.13 1.94
3170 6308 8.359060 AGCTATGTTGCGAAAATTTTGTAAAA 57.641 26.923 8.47 2.85 38.13 1.52
3171 6309 7.865385 AGAGCTATGTTGCGAAAATTTTGTAAA 59.135 29.630 8.47 0.00 38.13 2.01
3172 6310 7.367285 AGAGCTATGTTGCGAAAATTTTGTAA 58.633 30.769 8.47 4.26 38.13 2.41
3173 6311 6.908825 AGAGCTATGTTGCGAAAATTTTGTA 58.091 32.000 8.47 0.00 38.13 2.41
3174 6312 5.772521 AGAGCTATGTTGCGAAAATTTTGT 58.227 33.333 8.47 0.00 38.13 2.83
3175 6313 6.519315 CAAGAGCTATGTTGCGAAAATTTTG 58.481 36.000 8.47 2.31 38.13 2.44
3176 6314 5.119125 GCAAGAGCTATGTTGCGAAAATTTT 59.881 36.000 2.28 2.28 44.60 1.82
3177 6315 4.622740 GCAAGAGCTATGTTGCGAAAATTT 59.377 37.500 11.06 0.00 44.60 1.82
3178 6316 4.168760 GCAAGAGCTATGTTGCGAAAATT 58.831 39.130 11.06 0.00 44.60 1.82
3179 6317 3.762779 GCAAGAGCTATGTTGCGAAAAT 58.237 40.909 11.06 0.00 44.60 1.82
3180 6318 3.201726 GCAAGAGCTATGTTGCGAAAA 57.798 42.857 11.06 0.00 44.60 2.29
3181 6319 2.900122 GCAAGAGCTATGTTGCGAAA 57.100 45.000 11.06 0.00 44.60 3.46
3193 6331 7.596749 TGTAAAATAGTTCTGTAGCAAGAGC 57.403 36.000 0.00 0.00 42.56 4.09
3194 6332 8.988934 TGTTGTAAAATAGTTCTGTAGCAAGAG 58.011 33.333 0.00 0.00 0.00 2.85
3195 6333 8.896320 TGTTGTAAAATAGTTCTGTAGCAAGA 57.104 30.769 0.00 0.00 0.00 3.02
3198 6336 8.879759 GCTATGTTGTAAAATAGTTCTGTAGCA 58.120 33.333 4.27 0.00 0.00 3.49
3199 6337 9.099454 AGCTATGTTGTAAAATAGTTCTGTAGC 57.901 33.333 4.27 0.00 0.00 3.58
3202 6340 9.726438 AAGAGCTATGTTGTAAAATAGTTCTGT 57.274 29.630 16.88 8.54 42.59 3.41
3203 6341 9.979270 CAAGAGCTATGTTGTAAAATAGTTCTG 57.021 33.333 16.88 10.38 42.59 3.02
3204 6342 9.726438 ACAAGAGCTATGTTGTAAAATAGTTCT 57.274 29.630 12.67 12.67 44.19 3.01
3230 6368 0.749818 TCTCGGGTGCTTTTGTGCAA 60.750 50.000 0.00 0.00 45.12 4.08
3231 6369 0.749818 TTCTCGGGTGCTTTTGTGCA 60.750 50.000 0.00 0.00 41.05 4.57
3232 6370 0.040067 CTTCTCGGGTGCTTTTGTGC 60.040 55.000 0.00 0.00 0.00 4.57
3233 6371 1.532868 CTCTTCTCGGGTGCTTTTGTG 59.467 52.381 0.00 0.00 0.00 3.33
3234 6372 1.416401 TCTCTTCTCGGGTGCTTTTGT 59.584 47.619 0.00 0.00 0.00 2.83
3235 6373 2.072298 CTCTCTTCTCGGGTGCTTTTG 58.928 52.381 0.00 0.00 0.00 2.44
3236 6374 1.609320 GCTCTCTTCTCGGGTGCTTTT 60.609 52.381 0.00 0.00 0.00 2.27
3237 6375 0.036858 GCTCTCTTCTCGGGTGCTTT 60.037 55.000 0.00 0.00 0.00 3.51
3238 6376 1.188219 TGCTCTCTTCTCGGGTGCTT 61.188 55.000 0.00 0.00 0.00 3.91
3239 6377 1.607756 TGCTCTCTTCTCGGGTGCT 60.608 57.895 0.00 0.00 0.00 4.40
3240 6378 1.446966 GTGCTCTCTTCTCGGGTGC 60.447 63.158 0.00 0.00 0.00 5.01
3241 6379 1.216710 GGTGCTCTCTTCTCGGGTG 59.783 63.158 0.00 0.00 0.00 4.61
3242 6380 2.344203 CGGTGCTCTCTTCTCGGGT 61.344 63.158 0.00 0.00 0.00 5.28
3243 6381 2.344203 ACGGTGCTCTCTTCTCGGG 61.344 63.158 0.00 0.00 0.00 5.14
3244 6382 1.153939 CACGGTGCTCTCTTCTCGG 60.154 63.158 0.00 0.00 0.00 4.63
3245 6383 0.179176 CTCACGGTGCTCTCTTCTCG 60.179 60.000 2.51 0.00 0.00 4.04
3246 6384 1.132262 CTCTCACGGTGCTCTCTTCTC 59.868 57.143 2.51 0.00 0.00 2.87
3247 6385 1.173043 CTCTCACGGTGCTCTCTTCT 58.827 55.000 2.51 0.00 0.00 2.85
3248 6386 0.457681 GCTCTCACGGTGCTCTCTTC 60.458 60.000 2.51 0.00 0.00 2.87
3249 6387 0.897863 AGCTCTCACGGTGCTCTCTT 60.898 55.000 2.51 0.00 40.23 2.85
3250 6388 1.304052 AGCTCTCACGGTGCTCTCT 60.304 57.895 2.51 0.00 40.23 3.10
3251 6389 1.153862 CAGCTCTCACGGTGCTCTC 60.154 63.158 2.51 0.00 42.05 3.20
3252 6390 2.644212 CCAGCTCTCACGGTGCTCT 61.644 63.158 2.51 0.00 42.05 4.09
3253 6391 2.125753 CCAGCTCTCACGGTGCTC 60.126 66.667 2.51 0.00 42.05 4.26
3254 6392 2.044806 AAACCAGCTCTCACGGTGCT 62.045 55.000 2.51 0.00 44.38 4.40
3255 6393 1.598130 AAACCAGCTCTCACGGTGC 60.598 57.895 2.51 0.00 31.94 5.01
3256 6394 0.532862 ACAAACCAGCTCTCACGGTG 60.533 55.000 0.56 0.56 31.94 4.94
3257 6395 0.180406 AACAAACCAGCTCTCACGGT 59.820 50.000 0.00 0.00 33.32 4.83
3258 6396 0.588252 CAACAAACCAGCTCTCACGG 59.412 55.000 0.00 0.00 0.00 4.94
3259 6397 1.528586 CTCAACAAACCAGCTCTCACG 59.471 52.381 0.00 0.00 0.00 4.35
3260 6398 2.805099 CTCTCAACAAACCAGCTCTCAC 59.195 50.000 0.00 0.00 0.00 3.51
3261 6399 2.700371 TCTCTCAACAAACCAGCTCTCA 59.300 45.455 0.00 0.00 0.00 3.27
3262 6400 3.006323 TCTCTCTCAACAAACCAGCTCTC 59.994 47.826 0.00 0.00 0.00 3.20
3263 6401 2.968574 TCTCTCTCAACAAACCAGCTCT 59.031 45.455 0.00 0.00 0.00 4.09
3264 6402 3.006323 TCTCTCTCTCAACAAACCAGCTC 59.994 47.826 0.00 0.00 0.00 4.09
3265 6403 2.968574 TCTCTCTCTCAACAAACCAGCT 59.031 45.455 0.00 0.00 0.00 4.24
3266 6404 3.006323 TCTCTCTCTCTCAACAAACCAGC 59.994 47.826 0.00 0.00 0.00 4.85
3267 6405 4.522405 TCTCTCTCTCTCTCAACAAACCAG 59.478 45.833 0.00 0.00 0.00 4.00
3268 6406 4.474394 TCTCTCTCTCTCTCAACAAACCA 58.526 43.478 0.00 0.00 0.00 3.67
3269 6407 4.764823 TCTCTCTCTCTCTCTCAACAAACC 59.235 45.833 0.00 0.00 0.00 3.27
3270 6408 5.705441 TCTCTCTCTCTCTCTCTCAACAAAC 59.295 44.000 0.00 0.00 0.00 2.93
3271 6409 5.875224 TCTCTCTCTCTCTCTCTCAACAAA 58.125 41.667 0.00 0.00 0.00 2.83
3272 6410 5.248248 TCTCTCTCTCTCTCTCTCTCAACAA 59.752 44.000 0.00 0.00 0.00 2.83
3273 6411 4.777366 TCTCTCTCTCTCTCTCTCTCAACA 59.223 45.833 0.00 0.00 0.00 3.33
3274 6412 5.127845 TCTCTCTCTCTCTCTCTCTCTCAAC 59.872 48.000 0.00 0.00 0.00 3.18
3275 6413 5.272402 TCTCTCTCTCTCTCTCTCTCTCAA 58.728 45.833 0.00 0.00 0.00 3.02
3276 6414 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
3277 6415 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3278 6416 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3279 6417 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3280 6418 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3281 6419 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3282 6420 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3283 6421 5.452078 CTCTCTCTCTCTCTCTCTCTCTC 57.548 52.174 0.00 0.00 0.00 3.20
3634 6772 2.439880 CCCTTTCTCCTTCCCACCTATC 59.560 54.545 0.00 0.00 0.00 2.08
3635 6773 2.493091 CCCTTTCTCCTTCCCACCTAT 58.507 52.381 0.00 0.00 0.00 2.57
3636 6774 1.557188 CCCCTTTCTCCTTCCCACCTA 60.557 57.143 0.00 0.00 0.00 3.08
3637 6775 0.846870 CCCCTTTCTCCTTCCCACCT 60.847 60.000 0.00 0.00 0.00 4.00
3638 6776 1.691823 CCCCTTTCTCCTTCCCACC 59.308 63.158 0.00 0.00 0.00 4.61
3639 6777 1.000771 GCCCCTTTCTCCTTCCCAC 60.001 63.158 0.00 0.00 0.00 4.61
3640 6778 2.238701 GGCCCCTTTCTCCTTCCCA 61.239 63.158 0.00 0.00 0.00 4.37
3641 6779 2.684104 GGCCCCTTTCTCCTTCCC 59.316 66.667 0.00 0.00 0.00 3.97
3642 6780 2.272471 CGGCCCCTTTCTCCTTCC 59.728 66.667 0.00 0.00 0.00 3.46
3643 6781 2.438614 GCGGCCCCTTTCTCCTTC 60.439 66.667 0.00 0.00 0.00 3.46
3644 6782 3.256960 TGCGGCCCCTTTCTCCTT 61.257 61.111 0.00 0.00 0.00 3.36
3645 6783 3.721706 CTGCGGCCCCTTTCTCCT 61.722 66.667 0.00 0.00 0.00 3.69
3669 6807 3.438017 CTAGCTGAGCTCCCGTGGC 62.438 68.421 11.68 7.83 40.44 5.01
3670 6808 2.790791 CCTAGCTGAGCTCCCGTGG 61.791 68.421 11.68 3.05 40.44 4.94
3671 6809 2.790791 CCCTAGCTGAGCTCCCGTG 61.791 68.421 11.68 0.00 40.44 4.94
3672 6810 2.443016 CCCTAGCTGAGCTCCCGT 60.443 66.667 11.68 0.00 40.44 5.28
3673 6811 3.230245 CCCCTAGCTGAGCTCCCG 61.230 72.222 11.68 0.19 40.44 5.14
3674 6812 2.846754 CCCCCTAGCTGAGCTCCC 60.847 72.222 11.68 1.96 40.44 4.30
3675 6813 2.041405 ACCCCCTAGCTGAGCTCC 60.041 66.667 11.68 0.00 40.44 4.70
3676 6814 2.439104 CCACCCCCTAGCTGAGCTC 61.439 68.421 11.68 6.82 40.44 4.09
3677 6815 2.366167 CCACCCCCTAGCTGAGCT 60.366 66.667 13.25 13.25 43.41 4.09
3678 6816 3.483869 CCCACCCCCTAGCTGAGC 61.484 72.222 0.00 0.00 0.00 4.26
3679 6817 2.770048 CCCCACCCCCTAGCTGAG 60.770 72.222 0.00 0.00 0.00 3.35
3680 6818 4.431524 CCCCCACCCCCTAGCTGA 62.432 72.222 0.00 0.00 0.00 4.26
3681 6819 4.760220 ACCCCCACCCCCTAGCTG 62.760 72.222 0.00 0.00 0.00 4.24
3682 6820 4.760220 CACCCCCACCCCCTAGCT 62.760 72.222 0.00 0.00 0.00 3.32
3701 6839 0.996762 TCTCTCTCTCCCTCTCCCCC 60.997 65.000 0.00 0.00 0.00 5.40
3702 6840 0.478507 CTCTCTCTCTCCCTCTCCCC 59.521 65.000 0.00 0.00 0.00 4.81
3703 6841 1.222567 ACTCTCTCTCTCCCTCTCCC 58.777 60.000 0.00 0.00 0.00 4.30
3704 6842 4.461198 CTTAACTCTCTCTCTCCCTCTCC 58.539 52.174 0.00 0.00 0.00 3.71
3705 6843 4.165372 TCCTTAACTCTCTCTCTCCCTCTC 59.835 50.000 0.00 0.00 0.00 3.20
3706 6844 4.116113 TCCTTAACTCTCTCTCTCCCTCT 58.884 47.826 0.00 0.00 0.00 3.69
3707 6845 4.165372 TCTCCTTAACTCTCTCTCTCCCTC 59.835 50.000 0.00 0.00 0.00 4.30
3708 6846 4.116113 TCTCCTTAACTCTCTCTCTCCCT 58.884 47.826 0.00 0.00 0.00 4.20
3709 6847 4.165372 TCTCTCCTTAACTCTCTCTCTCCC 59.835 50.000 0.00 0.00 0.00 4.30
3710 6848 5.367945 TCTCTCCTTAACTCTCTCTCTCC 57.632 47.826 0.00 0.00 0.00 3.71
3711 6849 5.130477 TCCTCTCTCCTTAACTCTCTCTCTC 59.870 48.000 0.00 0.00 0.00 3.20
3712 6850 5.036916 TCCTCTCTCCTTAACTCTCTCTCT 58.963 45.833 0.00 0.00 0.00 3.10
3713 6851 5.367945 TCCTCTCTCCTTAACTCTCTCTC 57.632 47.826 0.00 0.00 0.00 3.20
3714 6852 4.166144 CCTCCTCTCTCCTTAACTCTCTCT 59.834 50.000 0.00 0.00 0.00 3.10
3715 6853 4.165372 TCCTCCTCTCTCCTTAACTCTCTC 59.835 50.000 0.00 0.00 0.00 3.20
3716 6854 4.116113 TCCTCCTCTCTCCTTAACTCTCT 58.884 47.826 0.00 0.00 0.00 3.10
3717 6855 4.513406 TCCTCCTCTCTCCTTAACTCTC 57.487 50.000 0.00 0.00 0.00 3.20
3718 6856 4.957606 TTCCTCCTCTCTCCTTAACTCT 57.042 45.455 0.00 0.00 0.00 3.24
3719 6857 4.404394 CCTTTCCTCCTCTCTCCTTAACTC 59.596 50.000 0.00 0.00 0.00 3.01
3720 6858 4.046103 TCCTTTCCTCCTCTCTCCTTAACT 59.954 45.833 0.00 0.00 0.00 2.24
3721 6859 4.354662 TCCTTTCCTCCTCTCTCCTTAAC 58.645 47.826 0.00 0.00 0.00 2.01
3722 6860 4.295238 TCTCCTTTCCTCCTCTCTCCTTAA 59.705 45.833 0.00 0.00 0.00 1.85
3723 6861 3.859248 TCTCCTTTCCTCCTCTCTCCTTA 59.141 47.826 0.00 0.00 0.00 2.69
3724 6862 2.657459 TCTCCTTTCCTCCTCTCTCCTT 59.343 50.000 0.00 0.00 0.00 3.36
3725 6863 2.293246 TCTCCTTTCCTCCTCTCTCCT 58.707 52.381 0.00 0.00 0.00 3.69
3726 6864 2.838637 TCTCCTTTCCTCCTCTCTCC 57.161 55.000 0.00 0.00 0.00 3.71
3727 6865 3.450817 CCTTTCTCCTTTCCTCCTCTCTC 59.549 52.174 0.00 0.00 0.00 3.20
3728 6866 3.449918 CCTTTCTCCTTTCCTCCTCTCT 58.550 50.000 0.00 0.00 0.00 3.10
3729 6867 2.503765 CCCTTTCTCCTTTCCTCCTCTC 59.496 54.545 0.00 0.00 0.00 3.20
3730 6868 2.556766 CCCTTTCTCCTTTCCTCCTCT 58.443 52.381 0.00 0.00 0.00 3.69
3731 6869 1.562008 CCCCTTTCTCCTTTCCTCCTC 59.438 57.143 0.00 0.00 0.00 3.71
3732 6870 1.675007 CCCCTTTCTCCTTTCCTCCT 58.325 55.000 0.00 0.00 0.00 3.69
3733 6871 0.033991 GCCCCTTTCTCCTTTCCTCC 60.034 60.000 0.00 0.00 0.00 4.30
3734 6872 0.995803 AGCCCCTTTCTCCTTTCCTC 59.004 55.000 0.00 0.00 0.00 3.71
3735 6873 0.701147 CAGCCCCTTTCTCCTTTCCT 59.299 55.000 0.00 0.00 0.00 3.36
3736 6874 0.323816 CCAGCCCCTTTCTCCTTTCC 60.324 60.000 0.00 0.00 0.00 3.13
3737 6875 0.967887 GCCAGCCCCTTTCTCCTTTC 60.968 60.000 0.00 0.00 0.00 2.62
3738 6876 1.077445 GCCAGCCCCTTTCTCCTTT 59.923 57.895 0.00 0.00 0.00 3.11
3739 6877 2.766660 GCCAGCCCCTTTCTCCTT 59.233 61.111 0.00 0.00 0.00 3.36
3740 6878 3.721706 CGCCAGCCCCTTTCTCCT 61.722 66.667 0.00 0.00 0.00 3.69
3741 6879 4.803908 CCGCCAGCCCCTTTCTCC 62.804 72.222 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.