Multiple sequence alignment - TraesCS4B01G340800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G340800 chr4B 100.000 2644 0 0 1 2644 633911876 633909233 0.000000e+00 4883.0
1 TraesCS4B01G340800 chr4B 91.227 1459 119 3 355 1811 551784725 551786176 0.000000e+00 1977.0
2 TraesCS4B01G340800 chr4B 90.778 1453 125 3 355 1805 551730117 551731562 0.000000e+00 1932.0
3 TraesCS4B01G340800 chr4B 91.707 832 62 6 1819 2644 185285795 185286625 0.000000e+00 1147.0
4 TraesCS4B01G340800 chr4B 85.990 207 26 3 32 236 634172261 634172466 4.430000e-53 219.0
5 TraesCS4B01G340800 chr4B 91.589 107 7 2 253 359 163752220 163752324 2.120000e-31 147.0
6 TraesCS4B01G340800 chr4B 89.286 112 6 4 247 358 24533739 24533634 4.590000e-28 135.0
7 TraesCS4B01G340800 chr4B 88.496 113 8 4 247 359 386829567 386829674 5.940000e-27 132.0
8 TraesCS4B01G340800 chr6B 91.376 1461 105 8 355 1811 189103574 189105017 0.000000e+00 1980.0
9 TraesCS4B01G340800 chr6B 90.840 1452 125 4 360 1811 452621557 452620114 0.000000e+00 1938.0
10 TraesCS4B01G340800 chr6B 88.889 63 5 2 85 147 196673318 196673258 2.820000e-10 76.8
11 TraesCS4B01G340800 chr6D 91.283 1457 116 6 355 1811 450905972 450907417 0.000000e+00 1977.0
12 TraesCS4B01G340800 chr6D 92.035 113 7 2 247 359 385668936 385669046 9.800000e-35 158.0
13 TraesCS4B01G340800 chr6D 89.565 115 7 5 246 359 302247087 302246977 9.870000e-30 141.0
14 TraesCS4B01G340800 chr6D 86.111 108 12 3 247 352 117421491 117421597 2.150000e-21 113.0
15 TraesCS4B01G340800 chr5B 91.334 1454 115 4 358 1811 641300587 641299145 0.000000e+00 1977.0
16 TraesCS4B01G340800 chr5B 83.333 102 13 4 85 186 622076864 622076961 1.010000e-14 91.6
17 TraesCS4B01G340800 chr7B 91.047 1452 118 5 360 1811 150842129 150843568 0.000000e+00 1951.0
18 TraesCS4B01G340800 chr7B 91.228 114 8 2 246 359 344304997 344304886 1.270000e-33 154.0
19 TraesCS4B01G340800 chr7B 90.265 113 10 1 247 359 344240114 344240003 2.120000e-31 147.0
20 TraesCS4B01G340800 chr2B 90.528 1457 131 6 355 1811 755544031 755545480 0.000000e+00 1919.0
21 TraesCS4B01G340800 chr2B 91.627 836 58 11 1819 2644 199964375 199965208 0.000000e+00 1146.0
22 TraesCS4B01G340800 chr2B 84.848 66 5 5 78 142 216936274 216936335 7.900000e-06 62.1
23 TraesCS4B01G340800 chr7D 90.522 1456 128 5 358 1811 463975814 463974367 0.000000e+00 1916.0
24 TraesCS4B01G340800 chr7D 91.898 827 64 3 1819 2643 263333141 263332316 0.000000e+00 1153.0
25 TraesCS4B01G340800 chr7D 92.920 113 5 2 247 359 315119156 315119047 7.570000e-36 161.0
26 TraesCS4B01G340800 chr1D 92.391 828 55 7 1819 2643 155417081 155416259 0.000000e+00 1173.0
27 TraesCS4B01G340800 chr1D 92.169 830 53 10 1819 2643 473153927 473154749 0.000000e+00 1162.0
28 TraesCS4B01G340800 chr1D 91.150 113 9 1 247 359 300950177 300950066 4.560000e-33 152.0
29 TraesCS4B01G340800 chr4D 92.058 831 58 7 1819 2643 264025137 264025965 0.000000e+00 1162.0
30 TraesCS4B01G340800 chr4D 92.105 114 6 2 246 359 370308056 370307946 9.800000e-35 158.0
31 TraesCS4B01G340800 chr4D 89.474 114 8 4 249 362 22044543 22044652 9.870000e-30 141.0
32 TraesCS4B01G340800 chr4D 89.286 112 6 3 247 358 13923562 13923457 4.590000e-28 135.0
33 TraesCS4B01G340800 chr4D 85.185 108 12 4 245 350 56310626 56310521 1.000000e-19 108.0
34 TraesCS4B01G340800 chr4D 83.898 118 11 8 246 359 295375929 295375816 3.600000e-19 106.0
35 TraesCS4B01G340800 chr4D 83.486 109 12 5 247 352 311816294 311816189 2.170000e-16 97.1
36 TraesCS4B01G340800 chr4D 84.314 102 11 5 247 346 437282611 437282709 7.790000e-16 95.3
37 TraesCS4B01G340800 chr4D 83.158 95 12 4 257 349 234211422 234211514 1.690000e-12 84.2
38 TraesCS4B01G340800 chr2D 91.937 831 57 10 1819 2643 359330832 359331658 0.000000e+00 1155.0
39 TraesCS4B01G340800 chr2D 91.150 113 6 4 247 358 506172581 506172690 1.640000e-32 150.0
40 TraesCS4B01G340800 chr2D 79.464 112 13 9 78 186 159707781 159707885 1.310000e-08 71.3
41 TraesCS4B01G340800 chr3B 91.928 830 57 10 1819 2642 541297700 541296875 0.000000e+00 1153.0
42 TraesCS4B01G340800 chr5A 91.597 833 60 10 1818 2643 97991687 97992516 0.000000e+00 1142.0
43 TraesCS4B01G340800 chr6A 90.909 121 6 5 242 362 122735707 122735592 9.800000e-35 158.0
44 TraesCS4B01G340800 chr6A 90.265 113 7 3 247 359 530125485 530125593 7.630000e-31 145.0
45 TraesCS4B01G340800 chr3D 92.035 113 7 2 247 359 181086227 181086117 9.800000e-35 158.0
46 TraesCS4B01G340800 chr1B 91.818 110 6 3 249 358 452993611 452993505 1.640000e-32 150.0
47 TraesCS4B01G340800 chr5D 89.381 113 9 3 247 359 421222686 421222795 3.550000e-29 139.0
48 TraesCS4B01G340800 chr5D 83.333 102 13 3 85 186 500686644 500686741 1.010000e-14 91.6
49 TraesCS4B01G340800 chr1A 78.195 133 19 9 68 193 555528492 555528363 2.820000e-10 76.8
50 TraesCS4B01G340800 chr2A 80.899 89 10 7 74 161 171073405 171073487 2.200000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G340800 chr4B 633909233 633911876 2643 True 4883 4883 100.000 1 2644 1 chr4B.!!$R2 2643
1 TraesCS4B01G340800 chr4B 551784725 551786176 1451 False 1977 1977 91.227 355 1811 1 chr4B.!!$F5 1456
2 TraesCS4B01G340800 chr4B 551730117 551731562 1445 False 1932 1932 90.778 355 1805 1 chr4B.!!$F4 1450
3 TraesCS4B01G340800 chr4B 185285795 185286625 830 False 1147 1147 91.707 1819 2644 1 chr4B.!!$F2 825
4 TraesCS4B01G340800 chr6B 189103574 189105017 1443 False 1980 1980 91.376 355 1811 1 chr6B.!!$F1 1456
5 TraesCS4B01G340800 chr6B 452620114 452621557 1443 True 1938 1938 90.840 360 1811 1 chr6B.!!$R2 1451
6 TraesCS4B01G340800 chr6D 450905972 450907417 1445 False 1977 1977 91.283 355 1811 1 chr6D.!!$F3 1456
7 TraesCS4B01G340800 chr5B 641299145 641300587 1442 True 1977 1977 91.334 358 1811 1 chr5B.!!$R1 1453
8 TraesCS4B01G340800 chr7B 150842129 150843568 1439 False 1951 1951 91.047 360 1811 1 chr7B.!!$F1 1451
9 TraesCS4B01G340800 chr2B 755544031 755545480 1449 False 1919 1919 90.528 355 1811 1 chr2B.!!$F3 1456
10 TraesCS4B01G340800 chr2B 199964375 199965208 833 False 1146 1146 91.627 1819 2644 1 chr2B.!!$F1 825
11 TraesCS4B01G340800 chr7D 463974367 463975814 1447 True 1916 1916 90.522 358 1811 1 chr7D.!!$R3 1453
12 TraesCS4B01G340800 chr7D 263332316 263333141 825 True 1153 1153 91.898 1819 2643 1 chr7D.!!$R1 824
13 TraesCS4B01G340800 chr1D 155416259 155417081 822 True 1173 1173 92.391 1819 2643 1 chr1D.!!$R1 824
14 TraesCS4B01G340800 chr1D 473153927 473154749 822 False 1162 1162 92.169 1819 2643 1 chr1D.!!$F1 824
15 TraesCS4B01G340800 chr4D 264025137 264025965 828 False 1162 1162 92.058 1819 2643 1 chr4D.!!$F3 824
16 TraesCS4B01G340800 chr2D 359330832 359331658 826 False 1155 1155 91.937 1819 2643 1 chr2D.!!$F2 824
17 TraesCS4B01G340800 chr3B 541296875 541297700 825 True 1153 1153 91.928 1819 2642 1 chr3B.!!$R1 823
18 TraesCS4B01G340800 chr5A 97991687 97992516 829 False 1142 1142 91.597 1818 2643 1 chr5A.!!$F1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.10741 AGAACAACGGCTGGTGTCAA 60.107 50.0 18.48 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1829 0.460987 CTCCTGCCTCGTGGATCAAC 60.461 60.0 7.92 0.0 34.57 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.718454 CAAATAAATTTGCCACGATCCAAA 57.282 33.333 0.00 0.00 40.42 3.28
52 53 7.126726 CAAATAAATTTGCCACGATCCAAAA 57.873 32.000 0.00 0.00 40.42 2.44
53 54 7.579726 CAAATAAATTTGCCACGATCCAAAAA 58.420 30.769 0.00 0.00 40.42 1.94
54 55 7.920160 AATAAATTTGCCACGATCCAAAAAT 57.080 28.000 0.00 0.00 34.93 1.82
55 56 9.442047 AAATAAATTTGCCACGATCCAAAAATA 57.558 25.926 0.00 0.00 34.93 1.40
56 57 6.720012 AAATTTGCCACGATCCAAAAATAC 57.280 33.333 0.00 0.00 34.93 1.89
57 58 4.855715 TTTGCCACGATCCAAAAATACA 57.144 36.364 0.00 0.00 0.00 2.29
58 59 4.855715 TTGCCACGATCCAAAAATACAA 57.144 36.364 0.00 0.00 0.00 2.41
59 60 4.855715 TGCCACGATCCAAAAATACAAA 57.144 36.364 0.00 0.00 0.00 2.83
60 61 5.398603 TGCCACGATCCAAAAATACAAAT 57.601 34.783 0.00 0.00 0.00 2.32
61 62 5.788450 TGCCACGATCCAAAAATACAAATT 58.212 33.333 0.00 0.00 0.00 1.82
62 63 6.226787 TGCCACGATCCAAAAATACAAATTT 58.773 32.000 0.00 0.00 36.87 1.82
63 64 6.146837 TGCCACGATCCAAAAATACAAATTTG 59.853 34.615 16.67 16.67 35.46 2.32
64 65 6.533185 CCACGATCCAAAAATACAAATTTGC 58.467 36.000 18.12 0.00 35.46 3.68
65 66 6.402011 CCACGATCCAAAAATACAAATTTGCC 60.402 38.462 18.12 0.00 35.46 4.52
66 67 5.347364 ACGATCCAAAAATACAAATTTGCCG 59.653 36.000 18.12 6.98 35.46 5.69
67 68 5.347364 CGATCCAAAAATACAAATTTGCCGT 59.653 36.000 18.12 1.54 35.46 5.68
68 69 5.914085 TCCAAAAATACAAATTTGCCGTG 57.086 34.783 18.12 7.76 35.46 4.94
69 70 4.752101 TCCAAAAATACAAATTTGCCGTGG 59.248 37.500 18.12 15.33 35.46 4.94
70 71 4.513318 CCAAAAATACAAATTTGCCGTGGT 59.487 37.500 18.12 0.04 35.46 4.16
71 72 5.333721 CCAAAAATACAAATTTGCCGTGGTC 60.334 40.000 18.12 0.00 35.46 4.02
72 73 3.586100 AATACAAATTTGCCGTGGTCC 57.414 42.857 18.12 0.00 0.00 4.46
73 74 1.982660 TACAAATTTGCCGTGGTCCA 58.017 45.000 18.12 0.00 0.00 4.02
74 75 1.115467 ACAAATTTGCCGTGGTCCAA 58.885 45.000 18.12 0.00 0.00 3.53
75 76 1.482593 ACAAATTTGCCGTGGTCCAAA 59.517 42.857 18.12 0.00 35.64 3.28
76 77 1.864082 CAAATTTGCCGTGGTCCAAAC 59.136 47.619 5.01 0.00 34.18 2.93
77 78 1.115467 AATTTGCCGTGGTCCAAACA 58.885 45.000 0.00 0.00 34.18 2.83
78 79 1.115467 ATTTGCCGTGGTCCAAACAA 58.885 45.000 0.00 0.00 34.18 2.83
79 80 1.115467 TTTGCCGTGGTCCAAACAAT 58.885 45.000 0.00 0.00 0.00 2.71
80 81 1.982660 TTGCCGTGGTCCAAACAATA 58.017 45.000 0.00 0.00 0.00 1.90
81 82 1.982660 TGCCGTGGTCCAAACAATAA 58.017 45.000 0.00 0.00 0.00 1.40
82 83 1.609555 TGCCGTGGTCCAAACAATAAC 59.390 47.619 0.00 0.00 0.00 1.89
83 84 1.883926 GCCGTGGTCCAAACAATAACT 59.116 47.619 0.00 0.00 0.00 2.24
84 85 2.295070 GCCGTGGTCCAAACAATAACTT 59.705 45.455 0.00 0.00 0.00 2.66
85 86 3.243602 GCCGTGGTCCAAACAATAACTTT 60.244 43.478 0.00 0.00 0.00 2.66
86 87 4.295051 CCGTGGTCCAAACAATAACTTTG 58.705 43.478 0.00 0.00 0.00 2.77
87 88 3.733727 CGTGGTCCAAACAATAACTTTGC 59.266 43.478 0.00 0.00 0.00 3.68
88 89 3.733727 GTGGTCCAAACAATAACTTTGCG 59.266 43.478 0.00 0.00 0.00 4.85
89 90 2.729360 GGTCCAAACAATAACTTTGCGC 59.271 45.455 0.00 0.00 0.00 6.09
90 91 3.376540 GTCCAAACAATAACTTTGCGCA 58.623 40.909 5.66 5.66 0.00 6.09
91 92 3.987220 GTCCAAACAATAACTTTGCGCAT 59.013 39.130 12.75 0.00 0.00 4.73
92 93 3.986572 TCCAAACAATAACTTTGCGCATG 59.013 39.130 12.75 10.43 0.00 4.06
93 94 3.123284 CCAAACAATAACTTTGCGCATGG 59.877 43.478 12.75 7.48 0.00 3.66
94 95 3.658757 AACAATAACTTTGCGCATGGT 57.341 38.095 12.75 10.72 0.00 3.55
95 96 4.775058 AACAATAACTTTGCGCATGGTA 57.225 36.364 12.75 11.27 0.00 3.25
96 97 4.355543 ACAATAACTTTGCGCATGGTAG 57.644 40.909 12.75 9.35 0.00 3.18
97 98 3.128589 ACAATAACTTTGCGCATGGTAGG 59.871 43.478 12.75 9.52 0.00 3.18
98 99 2.772077 TAACTTTGCGCATGGTAGGA 57.228 45.000 12.75 0.00 0.00 2.94
99 100 1.904287 AACTTTGCGCATGGTAGGAA 58.096 45.000 12.75 0.00 0.00 3.36
100 101 1.904287 ACTTTGCGCATGGTAGGAAA 58.096 45.000 12.75 0.00 0.00 3.13
101 102 2.235016 ACTTTGCGCATGGTAGGAAAA 58.765 42.857 12.75 0.00 0.00 2.29
102 103 2.625790 ACTTTGCGCATGGTAGGAAAAA 59.374 40.909 12.75 0.00 0.00 1.94
103 104 3.258123 ACTTTGCGCATGGTAGGAAAAAT 59.742 39.130 12.75 0.00 0.00 1.82
104 105 4.461081 ACTTTGCGCATGGTAGGAAAAATA 59.539 37.500 12.75 0.00 0.00 1.40
105 106 5.047660 ACTTTGCGCATGGTAGGAAAAATAA 60.048 36.000 12.75 0.00 0.00 1.40
106 107 5.392767 TTGCGCATGGTAGGAAAAATAAA 57.607 34.783 12.75 0.00 0.00 1.40
107 108 5.590530 TGCGCATGGTAGGAAAAATAAAT 57.409 34.783 5.66 0.00 0.00 1.40
108 109 5.587289 TGCGCATGGTAGGAAAAATAAATC 58.413 37.500 5.66 0.00 0.00 2.17
109 110 5.126222 TGCGCATGGTAGGAAAAATAAATCA 59.874 36.000 5.66 0.00 0.00 2.57
110 111 5.687285 GCGCATGGTAGGAAAAATAAATCAG 59.313 40.000 0.30 0.00 0.00 2.90
111 112 5.687285 CGCATGGTAGGAAAAATAAATCAGC 59.313 40.000 0.00 0.00 0.00 4.26
112 113 5.985530 GCATGGTAGGAAAAATAAATCAGCC 59.014 40.000 0.00 0.00 0.00 4.85
113 114 6.406849 GCATGGTAGGAAAAATAAATCAGCCA 60.407 38.462 0.00 0.00 0.00 4.75
114 115 7.687592 GCATGGTAGGAAAAATAAATCAGCCAT 60.688 37.037 0.00 0.00 32.75 4.40
115 116 7.111247 TGGTAGGAAAAATAAATCAGCCATG 57.889 36.000 0.00 0.00 0.00 3.66
116 117 6.098124 TGGTAGGAAAAATAAATCAGCCATGG 59.902 38.462 7.63 7.63 0.00 3.66
117 118 6.098266 GGTAGGAAAAATAAATCAGCCATGGT 59.902 38.462 14.67 0.00 0.00 3.55
118 119 5.981174 AGGAAAAATAAATCAGCCATGGTG 58.019 37.500 14.67 10.59 0.00 4.17
119 120 4.571984 GGAAAAATAAATCAGCCATGGTGC 59.428 41.667 14.67 0.00 0.00 5.01
120 121 4.822685 AAAATAAATCAGCCATGGTGCA 57.177 36.364 14.67 0.00 0.00 4.57
121 122 4.822685 AAATAAATCAGCCATGGTGCAA 57.177 36.364 14.67 0.00 0.00 4.08
122 123 4.822685 AATAAATCAGCCATGGTGCAAA 57.177 36.364 14.67 0.00 0.00 3.68
123 124 2.460757 AAATCAGCCATGGTGCAAAC 57.539 45.000 14.67 0.00 0.00 2.93
124 125 1.340088 AATCAGCCATGGTGCAAACA 58.660 45.000 14.67 0.00 0.00 2.83
125 126 1.340088 ATCAGCCATGGTGCAAACAA 58.660 45.000 14.67 0.00 0.00 2.83
126 127 1.340088 TCAGCCATGGTGCAAACAAT 58.660 45.000 14.67 0.00 0.00 2.71
127 128 2.523245 TCAGCCATGGTGCAAACAATA 58.477 42.857 14.67 0.00 0.00 1.90
128 129 2.896044 TCAGCCATGGTGCAAACAATAA 59.104 40.909 14.67 0.00 0.00 1.40
129 130 3.323115 TCAGCCATGGTGCAAACAATAAA 59.677 39.130 14.67 0.00 0.00 1.40
130 131 3.680937 CAGCCATGGTGCAAACAATAAAG 59.319 43.478 14.67 0.00 0.00 1.85
131 132 3.324556 AGCCATGGTGCAAACAATAAAGT 59.675 39.130 14.67 0.00 0.00 2.66
132 133 4.064388 GCCATGGTGCAAACAATAAAGTT 58.936 39.130 14.67 0.00 0.00 2.66
133 134 4.083908 GCCATGGTGCAAACAATAAAGTTG 60.084 41.667 14.67 0.00 0.00 3.16
134 135 4.083908 CCATGGTGCAAACAATAAAGTTGC 60.084 41.667 2.57 0.76 0.00 4.17
135 136 3.462021 TGGTGCAAACAATAAAGTTGCC 58.538 40.909 5.26 0.00 0.00 4.52
136 137 3.118629 TGGTGCAAACAATAAAGTTGCCA 60.119 39.130 5.26 0.00 0.00 4.92
137 138 4.064388 GGTGCAAACAATAAAGTTGCCAT 58.936 39.130 5.26 0.00 0.00 4.40
138 139 4.083908 GGTGCAAACAATAAAGTTGCCATG 60.084 41.667 5.26 0.00 0.00 3.66
139 140 4.749099 GTGCAAACAATAAAGTTGCCATGA 59.251 37.500 0.00 0.00 0.00 3.07
140 141 5.409214 GTGCAAACAATAAAGTTGCCATGAT 59.591 36.000 0.00 0.00 0.00 2.45
141 142 5.996513 TGCAAACAATAAAGTTGCCATGATT 59.003 32.000 0.00 0.00 0.00 2.57
142 143 6.147492 TGCAAACAATAAAGTTGCCATGATTC 59.853 34.615 0.00 0.00 0.00 2.52
143 144 6.147492 GCAAACAATAAAGTTGCCATGATTCA 59.853 34.615 0.00 0.00 0.00 2.57
144 145 7.307870 GCAAACAATAAAGTTGCCATGATTCAA 60.308 33.333 0.00 0.00 0.00 2.69
145 146 8.557864 CAAACAATAAAGTTGCCATGATTCAAA 58.442 29.630 0.00 0.00 0.00 2.69
146 147 8.674263 AACAATAAAGTTGCCATGATTCAAAA 57.326 26.923 0.00 0.00 0.00 2.44
147 148 8.851541 ACAATAAAGTTGCCATGATTCAAAAT 57.148 26.923 0.00 0.00 0.00 1.82
148 149 9.941325 ACAATAAAGTTGCCATGATTCAAAATA 57.059 25.926 0.00 0.00 0.00 1.40
157 158 8.367943 TGCCATGATTCAAAATATACATTTGC 57.632 30.769 0.00 0.00 37.62 3.68
158 159 7.441760 TGCCATGATTCAAAATATACATTTGCC 59.558 33.333 0.00 2.52 37.62 4.52
159 160 7.441760 GCCATGATTCAAAATATACATTTGCCA 59.558 33.333 0.00 6.48 37.62 4.92
160 161 9.496873 CCATGATTCAAAATATACATTTGCCAT 57.503 29.630 0.00 7.87 37.62 4.40
163 164 9.887629 TGATTCAAAATATACATTTGCCATTGT 57.112 25.926 7.61 0.00 37.62 2.71
166 167 8.929827 TCAAAATATACATTTGCCATTGTCTG 57.070 30.769 7.61 0.00 37.62 3.51
167 168 8.747471 TCAAAATATACATTTGCCATTGTCTGA 58.253 29.630 7.61 0.00 37.62 3.27
168 169 9.368674 CAAAATATACATTTGCCATTGTCTGAA 57.631 29.630 1.19 0.00 34.53 3.02
169 170 9.941325 AAAATATACATTTGCCATTGTCTGAAA 57.059 25.926 0.00 0.00 34.53 2.69
181 182 9.598517 TGCCATTGTCTGAAATATAAATTTTCC 57.401 29.630 0.00 0.00 35.41 3.13
182 183 9.598517 GCCATTGTCTGAAATATAAATTTTCCA 57.401 29.630 0.00 0.00 35.41 3.53
186 187 9.598517 TTGTCTGAAATATAAATTTTCCATGGC 57.401 29.630 6.96 0.00 35.41 4.40
187 188 8.203485 TGTCTGAAATATAAATTTTCCATGGCC 58.797 33.333 6.96 0.00 35.41 5.36
188 189 8.203485 GTCTGAAATATAAATTTTCCATGGCCA 58.797 33.333 8.56 8.56 35.41 5.36
189 190 8.423349 TCTGAAATATAAATTTTCCATGGCCAG 58.577 33.333 13.05 3.10 35.41 4.85
190 191 8.316497 TGAAATATAAATTTTCCATGGCCAGA 57.684 30.769 13.05 0.00 35.41 3.86
191 192 8.766476 TGAAATATAAATTTTCCATGGCCAGAA 58.234 29.630 13.05 7.56 35.41 3.02
192 193 9.612066 GAAATATAAATTTTCCATGGCCAGAAA 57.388 29.630 13.05 13.91 35.41 2.52
193 194 9.617523 AAATATAAATTTTCCATGGCCAGAAAG 57.382 29.630 13.05 0.36 33.75 2.62
194 195 4.980339 AAATTTTCCATGGCCAGAAAGT 57.020 36.364 13.05 10.53 33.75 2.66
195 196 4.980339 AATTTTCCATGGCCAGAAAGTT 57.020 36.364 17.37 17.37 33.75 2.66
196 197 6.432403 AAATTTTCCATGGCCAGAAAGTTA 57.568 33.333 21.10 9.58 32.69 2.24
197 198 6.625532 AATTTTCCATGGCCAGAAAGTTAT 57.374 33.333 20.06 10.32 32.27 1.89
198 199 5.404466 TTTTCCATGGCCAGAAAGTTATG 57.596 39.130 13.05 0.88 33.75 1.90
199 200 3.737559 TCCATGGCCAGAAAGTTATGT 57.262 42.857 13.05 0.00 0.00 2.29
200 201 4.853468 TCCATGGCCAGAAAGTTATGTA 57.147 40.909 13.05 0.00 0.00 2.29
201 202 4.780815 TCCATGGCCAGAAAGTTATGTAG 58.219 43.478 13.05 0.00 0.00 2.74
202 203 3.885297 CCATGGCCAGAAAGTTATGTAGG 59.115 47.826 13.05 0.00 0.00 3.18
203 204 4.526970 CATGGCCAGAAAGTTATGTAGGT 58.473 43.478 13.05 0.00 0.00 3.08
204 205 4.216411 TGGCCAGAAAGTTATGTAGGTC 57.784 45.455 0.00 0.00 0.00 3.85
205 206 3.585289 TGGCCAGAAAGTTATGTAGGTCA 59.415 43.478 0.00 0.00 0.00 4.02
206 207 4.192317 GGCCAGAAAGTTATGTAGGTCAG 58.808 47.826 0.00 0.00 0.00 3.51
207 208 4.192317 GCCAGAAAGTTATGTAGGTCAGG 58.808 47.826 0.00 0.00 0.00 3.86
208 209 4.770795 CCAGAAAGTTATGTAGGTCAGGG 58.229 47.826 0.00 0.00 0.00 4.45
209 210 4.192317 CAGAAAGTTATGTAGGTCAGGGC 58.808 47.826 0.00 0.00 0.00 5.19
210 211 3.844211 AGAAAGTTATGTAGGTCAGGGCA 59.156 43.478 0.00 0.00 0.00 5.36
211 212 4.288626 AGAAAGTTATGTAGGTCAGGGCAA 59.711 41.667 0.00 0.00 0.00 4.52
212 213 4.650972 AAGTTATGTAGGTCAGGGCAAA 57.349 40.909 0.00 0.00 0.00 3.68
213 214 4.862641 AGTTATGTAGGTCAGGGCAAAT 57.137 40.909 0.00 0.00 0.00 2.32
214 215 4.526970 AGTTATGTAGGTCAGGGCAAATG 58.473 43.478 0.00 0.00 0.00 2.32
215 216 4.018415 AGTTATGTAGGTCAGGGCAAATGT 60.018 41.667 0.00 0.00 0.00 2.71
216 217 2.198827 TGTAGGTCAGGGCAAATGTG 57.801 50.000 0.00 0.00 0.00 3.21
217 218 1.423541 TGTAGGTCAGGGCAAATGTGT 59.576 47.619 0.00 0.00 0.00 3.72
218 219 2.640332 TGTAGGTCAGGGCAAATGTGTA 59.360 45.455 0.00 0.00 0.00 2.90
219 220 2.496899 AGGTCAGGGCAAATGTGTAG 57.503 50.000 0.00 0.00 0.00 2.74
220 221 1.985159 AGGTCAGGGCAAATGTGTAGA 59.015 47.619 0.00 0.00 0.00 2.59
221 222 2.375174 AGGTCAGGGCAAATGTGTAGAA 59.625 45.455 0.00 0.00 0.00 2.10
222 223 2.488153 GGTCAGGGCAAATGTGTAGAAC 59.512 50.000 0.00 0.00 0.00 3.01
223 224 3.146066 GTCAGGGCAAATGTGTAGAACA 58.854 45.455 0.00 0.00 44.79 3.18
224 225 3.568007 GTCAGGGCAAATGTGTAGAACAA 59.432 43.478 0.00 0.00 43.61 2.83
225 226 3.568007 TCAGGGCAAATGTGTAGAACAAC 59.432 43.478 0.00 0.00 43.61 3.32
226 227 2.552315 AGGGCAAATGTGTAGAACAACG 59.448 45.455 0.00 0.00 43.61 4.10
227 228 2.351350 GGGCAAATGTGTAGAACAACGG 60.351 50.000 0.00 0.00 43.61 4.44
228 229 2.315901 GCAAATGTGTAGAACAACGGC 58.684 47.619 0.00 0.00 43.61 5.68
229 230 2.031157 GCAAATGTGTAGAACAACGGCT 60.031 45.455 0.00 0.00 43.61 5.52
230 231 3.554524 CAAATGTGTAGAACAACGGCTG 58.445 45.455 0.00 0.00 43.61 4.85
231 232 1.808411 ATGTGTAGAACAACGGCTGG 58.192 50.000 0.00 0.00 43.61 4.85
232 233 0.466543 TGTGTAGAACAACGGCTGGT 59.533 50.000 0.00 0.00 35.24 4.00
233 234 0.865769 GTGTAGAACAACGGCTGGTG 59.134 55.000 9.65 9.65 0.00 4.17
234 235 0.466543 TGTAGAACAACGGCTGGTGT 59.533 50.000 11.41 11.41 0.00 4.16
235 236 1.145803 GTAGAACAACGGCTGGTGTC 58.854 55.000 18.48 10.70 0.00 3.67
236 237 0.753867 TAGAACAACGGCTGGTGTCA 59.246 50.000 18.48 2.32 0.00 3.58
237 238 0.107410 AGAACAACGGCTGGTGTCAA 60.107 50.000 18.48 0.00 0.00 3.18
238 239 0.307760 GAACAACGGCTGGTGTCAAG 59.692 55.000 18.48 0.00 0.00 3.02
239 240 1.101049 AACAACGGCTGGTGTCAAGG 61.101 55.000 18.48 0.00 0.00 3.61
240 241 1.227823 CAACGGCTGGTGTCAAGGA 60.228 57.895 1.11 0.00 0.00 3.36
241 242 0.606401 CAACGGCTGGTGTCAAGGAT 60.606 55.000 1.11 0.00 0.00 3.24
242 243 0.981183 AACGGCTGGTGTCAAGGATA 59.019 50.000 0.00 0.00 0.00 2.59
243 244 1.204146 ACGGCTGGTGTCAAGGATAT 58.796 50.000 0.00 0.00 0.00 1.63
244 245 1.559682 ACGGCTGGTGTCAAGGATATT 59.440 47.619 0.00 0.00 0.00 1.28
245 246 2.769663 ACGGCTGGTGTCAAGGATATTA 59.230 45.455 0.00 0.00 0.00 0.98
246 247 3.391296 ACGGCTGGTGTCAAGGATATTAT 59.609 43.478 0.00 0.00 0.00 1.28
247 248 3.748048 CGGCTGGTGTCAAGGATATTATG 59.252 47.826 0.00 0.00 0.00 1.90
248 249 4.718961 GGCTGGTGTCAAGGATATTATGT 58.281 43.478 0.00 0.00 0.00 2.29
249 250 5.133221 GGCTGGTGTCAAGGATATTATGTT 58.867 41.667 0.00 0.00 0.00 2.71
250 251 5.009010 GGCTGGTGTCAAGGATATTATGTTG 59.991 44.000 0.00 0.00 0.00 3.33
251 252 5.009010 GCTGGTGTCAAGGATATTATGTTGG 59.991 44.000 0.00 0.00 0.00 3.77
252 253 5.445069 TGGTGTCAAGGATATTATGTTGGG 58.555 41.667 0.00 0.00 0.00 4.12
253 254 5.192722 TGGTGTCAAGGATATTATGTTGGGA 59.807 40.000 0.00 0.00 0.00 4.37
254 255 6.126409 GGTGTCAAGGATATTATGTTGGGAA 58.874 40.000 0.00 0.00 0.00 3.97
255 256 6.263168 GGTGTCAAGGATATTATGTTGGGAAG 59.737 42.308 0.00 0.00 0.00 3.46
256 257 5.827797 TGTCAAGGATATTATGTTGGGAAGC 59.172 40.000 0.00 0.00 0.00 3.86
257 258 5.827797 GTCAAGGATATTATGTTGGGAAGCA 59.172 40.000 0.00 0.00 0.00 3.91
258 259 6.491403 GTCAAGGATATTATGTTGGGAAGCAT 59.509 38.462 0.00 0.00 0.00 3.79
259 260 7.665559 GTCAAGGATATTATGTTGGGAAGCATA 59.334 37.037 0.00 0.00 0.00 3.14
260 261 7.884877 TCAAGGATATTATGTTGGGAAGCATAG 59.115 37.037 0.00 0.00 0.00 2.23
261 262 7.335127 AGGATATTATGTTGGGAAGCATAGT 57.665 36.000 0.00 0.00 0.00 2.12
262 263 8.449423 AGGATATTATGTTGGGAAGCATAGTA 57.551 34.615 0.00 0.00 0.00 1.82
263 264 8.543774 AGGATATTATGTTGGGAAGCATAGTAG 58.456 37.037 0.00 0.00 0.00 2.57
264 265 8.540388 GGATATTATGTTGGGAAGCATAGTAGA 58.460 37.037 0.00 0.00 0.00 2.59
265 266 9.944376 GATATTATGTTGGGAAGCATAGTAGAA 57.056 33.333 0.00 0.00 0.00 2.10
268 269 6.759497 ATGTTGGGAAGCATAGTAGAAAAC 57.241 37.500 0.00 0.00 0.00 2.43
269 270 5.626142 TGTTGGGAAGCATAGTAGAAAACA 58.374 37.500 0.00 0.00 0.00 2.83
270 271 6.065374 TGTTGGGAAGCATAGTAGAAAACAA 58.935 36.000 0.00 0.00 0.00 2.83
271 272 6.547880 TGTTGGGAAGCATAGTAGAAAACAAA 59.452 34.615 0.00 0.00 0.00 2.83
272 273 7.068839 TGTTGGGAAGCATAGTAGAAAACAAAA 59.931 33.333 0.00 0.00 0.00 2.44
273 274 7.589958 TGGGAAGCATAGTAGAAAACAAAAA 57.410 32.000 0.00 0.00 0.00 1.94
274 275 7.430441 TGGGAAGCATAGTAGAAAACAAAAAC 58.570 34.615 0.00 0.00 0.00 2.43
275 276 7.068839 TGGGAAGCATAGTAGAAAACAAAAACA 59.931 33.333 0.00 0.00 0.00 2.83
276 277 7.923878 GGGAAGCATAGTAGAAAACAAAAACAA 59.076 33.333 0.00 0.00 0.00 2.83
277 278 8.752254 GGAAGCATAGTAGAAAACAAAAACAAC 58.248 33.333 0.00 0.00 0.00 3.32
278 279 9.516314 GAAGCATAGTAGAAAACAAAAACAACT 57.484 29.630 0.00 0.00 0.00 3.16
279 280 9.516314 AAGCATAGTAGAAAACAAAAACAACTC 57.484 29.630 0.00 0.00 0.00 3.01
280 281 7.855904 AGCATAGTAGAAAACAAAAACAACTCG 59.144 33.333 0.00 0.00 0.00 4.18
281 282 7.112984 GCATAGTAGAAAACAAAAACAACTCGG 59.887 37.037 0.00 0.00 0.00 4.63
282 283 5.337554 AGTAGAAAACAAAAACAACTCGGC 58.662 37.500 0.00 0.00 0.00 5.54
283 284 3.517602 AGAAAACAAAAACAACTCGGCC 58.482 40.909 0.00 0.00 0.00 6.13
284 285 3.194755 AGAAAACAAAAACAACTCGGCCT 59.805 39.130 0.00 0.00 0.00 5.19
285 286 4.399934 AGAAAACAAAAACAACTCGGCCTA 59.600 37.500 0.00 0.00 0.00 3.93
286 287 3.703286 AACAAAAACAACTCGGCCTAC 57.297 42.857 0.00 0.00 0.00 3.18
287 288 1.600485 ACAAAAACAACTCGGCCTACG 59.400 47.619 0.00 0.00 46.11 3.51
297 298 2.267961 GGCCTACGAACACCCAGG 59.732 66.667 0.00 0.00 0.00 4.45
298 299 2.288025 GGCCTACGAACACCCAGGA 61.288 63.158 0.00 0.00 0.00 3.86
299 300 1.675219 GCCTACGAACACCCAGGAA 59.325 57.895 0.00 0.00 0.00 3.36
300 301 0.672711 GCCTACGAACACCCAGGAAC 60.673 60.000 0.00 0.00 0.00 3.62
301 302 0.682852 CCTACGAACACCCAGGAACA 59.317 55.000 0.00 0.00 0.00 3.18
302 303 1.071071 CCTACGAACACCCAGGAACAA 59.929 52.381 0.00 0.00 0.00 2.83
303 304 2.290071 CCTACGAACACCCAGGAACAAT 60.290 50.000 0.00 0.00 0.00 2.71
304 305 3.055675 CCTACGAACACCCAGGAACAATA 60.056 47.826 0.00 0.00 0.00 1.90
305 306 3.713826 ACGAACACCCAGGAACAATAT 57.286 42.857 0.00 0.00 0.00 1.28
306 307 3.343617 ACGAACACCCAGGAACAATATG 58.656 45.455 0.00 0.00 0.00 1.78
307 308 3.008594 ACGAACACCCAGGAACAATATGA 59.991 43.478 0.00 0.00 0.00 2.15
308 309 4.006989 CGAACACCCAGGAACAATATGAA 58.993 43.478 0.00 0.00 0.00 2.57
309 310 4.094887 CGAACACCCAGGAACAATATGAAG 59.905 45.833 0.00 0.00 0.00 3.02
310 311 3.968265 ACACCCAGGAACAATATGAAGG 58.032 45.455 0.00 0.00 0.00 3.46
311 312 3.333680 ACACCCAGGAACAATATGAAGGT 59.666 43.478 0.00 0.00 0.00 3.50
312 313 3.696051 CACCCAGGAACAATATGAAGGTG 59.304 47.826 0.00 0.00 36.61 4.00
313 314 2.689983 CCCAGGAACAATATGAAGGTGC 59.310 50.000 0.00 0.00 0.00 5.01
314 315 3.355378 CCAGGAACAATATGAAGGTGCA 58.645 45.455 0.00 0.00 0.00 4.57
315 316 3.956199 CCAGGAACAATATGAAGGTGCAT 59.044 43.478 0.00 0.00 0.00 3.96
316 317 4.403432 CCAGGAACAATATGAAGGTGCATT 59.597 41.667 0.00 0.00 0.00 3.56
317 318 5.593909 CCAGGAACAATATGAAGGTGCATTA 59.406 40.000 0.00 0.00 0.00 1.90
318 319 6.238842 CCAGGAACAATATGAAGGTGCATTAG 60.239 42.308 0.00 0.00 0.00 1.73
319 320 6.543465 CAGGAACAATATGAAGGTGCATTAGA 59.457 38.462 0.00 0.00 0.00 2.10
320 321 6.769822 AGGAACAATATGAAGGTGCATTAGAG 59.230 38.462 0.00 0.00 0.00 2.43
321 322 6.016777 GGAACAATATGAAGGTGCATTAGAGG 60.017 42.308 0.00 0.00 0.00 3.69
322 323 6.252599 ACAATATGAAGGTGCATTAGAGGA 57.747 37.500 0.00 0.00 0.00 3.71
323 324 6.845908 ACAATATGAAGGTGCATTAGAGGAT 58.154 36.000 0.00 0.00 0.00 3.24
324 325 7.293073 ACAATATGAAGGTGCATTAGAGGATT 58.707 34.615 0.00 0.00 0.00 3.01
325 326 7.230108 ACAATATGAAGGTGCATTAGAGGATTG 59.770 37.037 0.00 0.00 0.00 2.67
326 327 3.889815 TGAAGGTGCATTAGAGGATTGG 58.110 45.455 0.00 0.00 0.00 3.16
327 328 3.266772 TGAAGGTGCATTAGAGGATTGGT 59.733 43.478 0.00 0.00 0.00 3.67
328 329 4.263905 TGAAGGTGCATTAGAGGATTGGTT 60.264 41.667 0.00 0.00 0.00 3.67
329 330 3.891049 AGGTGCATTAGAGGATTGGTTC 58.109 45.455 0.00 0.00 0.00 3.62
330 331 3.266772 AGGTGCATTAGAGGATTGGTTCA 59.733 43.478 0.00 0.00 0.00 3.18
331 332 4.079558 AGGTGCATTAGAGGATTGGTTCAT 60.080 41.667 0.00 0.00 0.00 2.57
332 333 4.037208 GGTGCATTAGAGGATTGGTTCATG 59.963 45.833 0.00 0.00 0.00 3.07
333 334 4.883585 GTGCATTAGAGGATTGGTTCATGA 59.116 41.667 0.00 0.00 0.00 3.07
334 335 5.533903 GTGCATTAGAGGATTGGTTCATGAT 59.466 40.000 0.00 0.00 0.00 2.45
335 336 5.766670 TGCATTAGAGGATTGGTTCATGATC 59.233 40.000 0.00 0.00 0.00 2.92
336 337 5.106791 GCATTAGAGGATTGGTTCATGATCG 60.107 44.000 0.00 0.00 0.00 3.69
337 338 5.614324 TTAGAGGATTGGTTCATGATCGT 57.386 39.130 0.00 0.00 0.00 3.73
338 339 4.494091 AGAGGATTGGTTCATGATCGTT 57.506 40.909 0.00 0.00 0.00 3.85
339 340 5.614324 AGAGGATTGGTTCATGATCGTTA 57.386 39.130 0.00 0.00 0.00 3.18
340 341 5.360591 AGAGGATTGGTTCATGATCGTTAC 58.639 41.667 0.00 0.00 0.00 2.50
341 342 4.451900 AGGATTGGTTCATGATCGTTACC 58.548 43.478 6.57 6.57 0.00 2.85
342 343 4.080582 AGGATTGGTTCATGATCGTTACCA 60.081 41.667 11.41 11.41 37.12 3.25
345 346 4.280436 TGGTTCATGATCGTTACCAACT 57.720 40.909 12.78 0.00 36.03 3.16
346 347 4.250464 TGGTTCATGATCGTTACCAACTC 58.750 43.478 12.78 0.00 36.03 3.01
347 348 3.621715 GGTTCATGATCGTTACCAACTCC 59.378 47.826 8.38 0.00 0.00 3.85
348 349 3.159353 TCATGATCGTTACCAACTCCG 57.841 47.619 0.00 0.00 0.00 4.63
349 350 2.756207 TCATGATCGTTACCAACTCCGA 59.244 45.455 0.00 0.00 0.00 4.55
350 351 2.933495 TGATCGTTACCAACTCCGAG 57.067 50.000 0.00 0.00 32.26 4.63
351 352 2.165167 TGATCGTTACCAACTCCGAGT 58.835 47.619 0.00 0.00 32.26 4.18
352 353 3.346315 TGATCGTTACCAACTCCGAGTA 58.654 45.455 0.26 0.00 32.26 2.59
353 354 3.949754 TGATCGTTACCAACTCCGAGTAT 59.050 43.478 0.26 0.00 32.26 2.12
356 357 4.260985 TCGTTACCAACTCCGAGTATGTA 58.739 43.478 0.26 3.96 0.00 2.29
375 376 2.895242 AGCTGGCCTTCATCTTCTTT 57.105 45.000 3.32 0.00 0.00 2.52
441 442 3.372123 TCGTGGTCGATCTGCCAA 58.628 55.556 6.68 0.00 41.35 4.52
490 491 1.342174 CTGGCATTTGCACTGGTTCTT 59.658 47.619 4.74 0.00 44.36 2.52
491 492 1.340889 TGGCATTTGCACTGGTTCTTC 59.659 47.619 4.74 0.00 44.36 2.87
492 493 1.337167 GGCATTTGCACTGGTTCTTCC 60.337 52.381 4.74 0.00 44.36 3.46
531 535 2.646175 CCCACTGATGACCGTCGGT 61.646 63.158 18.94 18.94 39.44 4.69
550 554 2.586792 GCACGATTGCCCTCTCCT 59.413 61.111 0.00 0.00 43.66 3.69
555 559 2.294791 CACGATTGCCCTCTCCTAGTAG 59.705 54.545 0.00 0.00 0.00 2.57
556 560 2.091775 ACGATTGCCCTCTCCTAGTAGT 60.092 50.000 0.00 0.00 0.00 2.73
561 565 1.831736 GCCCTCTCCTAGTAGTTTGCA 59.168 52.381 0.00 0.00 0.00 4.08
565 569 3.133721 CCTCTCCTAGTAGTTTGCAGCAT 59.866 47.826 0.00 0.00 0.00 3.79
583 587 2.280186 GGCGGTCATTAGGAGCCG 60.280 66.667 0.00 0.00 40.99 5.52
607 611 2.047061 AGCTCTTGTACTTGGACCACA 58.953 47.619 0.00 0.00 0.00 4.17
671 675 2.094026 CCCAGTGAATGATGTCGACTGA 60.094 50.000 17.92 0.00 36.89 3.41
954 961 1.153565 AGAAGAGAGGGGGTGGGTAAA 59.846 52.381 0.00 0.00 0.00 2.01
968 975 2.110188 TGGGTAAAATAGTGGTGGGCAA 59.890 45.455 0.00 0.00 0.00 4.52
1009 1018 3.575805 GATGGAGAGGAGGAAGAGTGAT 58.424 50.000 0.00 0.00 0.00 3.06
1091 1100 1.887854 CCATGAATTGTGTGCAGACCA 59.112 47.619 12.00 0.00 0.00 4.02
1168 1177 0.684153 AACCCCTTCATCCAATGCCG 60.684 55.000 0.00 0.00 0.00 5.69
1213 1225 1.577922 CGACGAAGACCCGAAGACA 59.422 57.895 0.00 0.00 0.00 3.41
1247 1259 1.433879 GACGAGCGCATGTAGGAGT 59.566 57.895 11.47 0.00 0.00 3.85
1273 1288 1.501741 CAACAAGCGCCGCAACTAT 59.498 52.632 13.36 0.00 0.00 2.12
1285 1300 1.668419 GCAACTATGGCCACTACCAG 58.332 55.000 8.16 2.81 44.71 4.00
1360 1375 2.780040 ATCCCCATGCCCCTGGAG 60.780 66.667 0.00 0.00 38.69 3.86
1450 1466 1.741770 GGCGGTGAAGCTGACGAAT 60.742 57.895 0.00 0.00 37.29 3.34
1487 1503 2.121689 AGGGTTGGGCCACCTACA 60.122 61.111 13.77 0.00 43.22 2.74
1524 1540 2.700371 TCAAGATCGGCTACATGGTGAT 59.300 45.455 0.00 0.00 0.00 3.06
1528 1544 3.641436 AGATCGGCTACATGGTGATGTTA 59.359 43.478 0.00 0.00 40.05 2.41
1578 1595 2.294512 TCATCATCTTCGACGAGGATGG 59.705 50.000 35.30 25.39 46.54 3.51
1579 1596 1.763968 TCATCTTCGACGAGGATGGT 58.236 50.000 35.30 11.91 43.38 3.55
1587 1604 1.603172 CGACGAGGATGGTATTGAGGC 60.603 57.143 0.00 0.00 0.00 4.70
1619 1636 2.357034 GGAAGCACGACGAAGCCA 60.357 61.111 0.00 0.00 0.00 4.75
1740 1757 7.710907 GTGTGGTACTGCTTATCTGAAATATGA 59.289 37.037 0.00 0.00 0.00 2.15
1816 1833 3.006112 TGGTTGTGCCAAAGTAGTTGA 57.994 42.857 0.00 0.00 45.94 3.18
1881 1901 3.072468 CTCGTGGGCCCCTCGTAA 61.072 66.667 27.56 14.28 40.72 3.18
2072 2110 1.758936 TTACCTCTCCGATGAAGCGA 58.241 50.000 0.00 0.00 0.00 4.93
2134 2175 5.360714 AGCTAGATGGTTCTTCTCTCTCTTG 59.639 44.000 0.00 0.00 33.17 3.02
2356 2397 7.200434 TGGCCTACTAGATTGATCTTTCTTT 57.800 36.000 3.32 0.00 38.32 2.52
2379 2420 2.479566 TGGGAGAAGTGCTTAGCTTG 57.520 50.000 5.60 0.00 0.00 4.01
2381 2422 1.279271 GGGAGAAGTGCTTAGCTTGGA 59.721 52.381 5.60 0.00 0.00 3.53
2423 2464 1.488705 CCCAGTGACAGTAGGGGCAA 61.489 60.000 9.00 0.00 37.66 4.52
2437 2478 1.455248 GGGCAACAAGGCACGTATTA 58.545 50.000 0.00 0.00 46.44 0.98
2472 2513 4.947388 TCGAGGATAAAAAGATGGGGTTTG 59.053 41.667 0.00 0.00 0.00 2.93
2517 2558 3.739810 CCTCTACATCATGTCATCTTGCG 59.260 47.826 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.532697 GCAAATTTATTTGTTTAAGCATGACAG 57.467 29.630 14.66 0.00 46.63 3.51
15 16 8.502387 GGCAAATTTATTTGTTTAAGCATGACA 58.498 29.630 14.66 0.00 46.63 3.58
16 17 8.502387 TGGCAAATTTATTTGTTTAAGCATGAC 58.498 29.630 14.66 0.00 46.63 3.06
17 18 8.502387 GTGGCAAATTTATTTGTTTAAGCATGA 58.498 29.630 14.66 0.00 46.63 3.07
18 19 7.478044 CGTGGCAAATTTATTTGTTTAAGCATG 59.522 33.333 14.66 0.00 46.63 4.06
19 20 7.386299 TCGTGGCAAATTTATTTGTTTAAGCAT 59.614 29.630 14.66 0.00 46.63 3.79
20 21 6.701841 TCGTGGCAAATTTATTTGTTTAAGCA 59.298 30.769 14.66 0.00 46.63 3.91
21 22 7.111353 TCGTGGCAAATTTATTTGTTTAAGC 57.889 32.000 14.66 1.94 46.63 3.09
22 23 8.379902 GGATCGTGGCAAATTTATTTGTTTAAG 58.620 33.333 14.66 6.24 46.63 1.85
23 24 7.872993 TGGATCGTGGCAAATTTATTTGTTTAA 59.127 29.630 14.66 1.36 46.63 1.52
24 25 7.378966 TGGATCGTGGCAAATTTATTTGTTTA 58.621 30.769 14.66 2.06 46.63 2.01
25 26 6.226787 TGGATCGTGGCAAATTTATTTGTTT 58.773 32.000 14.66 0.00 46.63 2.83
26 27 5.788450 TGGATCGTGGCAAATTTATTTGTT 58.212 33.333 14.66 0.00 46.63 2.83
27 28 5.398603 TGGATCGTGGCAAATTTATTTGT 57.601 34.783 14.66 0.00 46.63 2.83
29 30 7.736447 TTTTTGGATCGTGGCAAATTTATTT 57.264 28.000 0.00 0.00 0.00 1.40
30 31 7.920160 ATTTTTGGATCGTGGCAAATTTATT 57.080 28.000 0.00 0.00 0.00 1.40
31 32 8.037758 TGTATTTTTGGATCGTGGCAAATTTAT 58.962 29.630 0.00 0.00 0.00 1.40
32 33 7.378966 TGTATTTTTGGATCGTGGCAAATTTA 58.621 30.769 0.00 0.00 0.00 1.40
33 34 6.226787 TGTATTTTTGGATCGTGGCAAATTT 58.773 32.000 0.00 0.00 0.00 1.82
34 35 5.788450 TGTATTTTTGGATCGTGGCAAATT 58.212 33.333 0.00 0.00 0.00 1.82
35 36 5.398603 TGTATTTTTGGATCGTGGCAAAT 57.601 34.783 0.00 0.00 0.00 2.32
36 37 4.855715 TGTATTTTTGGATCGTGGCAAA 57.144 36.364 0.00 0.00 0.00 3.68
37 38 4.855715 TTGTATTTTTGGATCGTGGCAA 57.144 36.364 0.00 0.00 0.00 4.52
38 39 4.855715 TTTGTATTTTTGGATCGTGGCA 57.144 36.364 0.00 0.00 0.00 4.92
39 40 6.533185 CAAATTTGTATTTTTGGATCGTGGC 58.467 36.000 10.15 0.00 31.63 5.01
40 41 6.402011 GGCAAATTTGTATTTTTGGATCGTGG 60.402 38.462 19.03 0.00 34.22 4.94
41 42 6.533185 GGCAAATTTGTATTTTTGGATCGTG 58.467 36.000 19.03 0.00 34.22 4.35
42 43 5.347364 CGGCAAATTTGTATTTTTGGATCGT 59.653 36.000 19.03 0.00 34.22 3.73
43 44 5.347364 ACGGCAAATTTGTATTTTTGGATCG 59.653 36.000 19.03 8.54 34.22 3.69
44 45 6.402011 CCACGGCAAATTTGTATTTTTGGATC 60.402 38.462 19.03 0.00 34.22 3.36
45 46 5.411053 CCACGGCAAATTTGTATTTTTGGAT 59.589 36.000 19.03 0.00 34.22 3.41
46 47 4.752101 CCACGGCAAATTTGTATTTTTGGA 59.248 37.500 19.03 0.00 34.22 3.53
47 48 4.513318 ACCACGGCAAATTTGTATTTTTGG 59.487 37.500 19.03 16.98 34.22 3.28
48 49 5.333721 GGACCACGGCAAATTTGTATTTTTG 60.334 40.000 19.03 8.26 36.21 2.44
49 50 4.752604 GGACCACGGCAAATTTGTATTTTT 59.247 37.500 19.03 1.11 31.63 1.94
50 51 4.202264 TGGACCACGGCAAATTTGTATTTT 60.202 37.500 19.03 0.62 31.63 1.82
51 52 3.322254 TGGACCACGGCAAATTTGTATTT 59.678 39.130 19.03 0.09 34.29 1.40
52 53 2.894126 TGGACCACGGCAAATTTGTATT 59.106 40.909 19.03 1.29 0.00 1.89
53 54 2.520069 TGGACCACGGCAAATTTGTAT 58.480 42.857 19.03 2.91 0.00 2.29
54 55 1.982660 TGGACCACGGCAAATTTGTA 58.017 45.000 19.03 0.00 0.00 2.41
55 56 1.115467 TTGGACCACGGCAAATTTGT 58.885 45.000 19.03 0.00 0.00 2.83
56 57 1.864082 GTTTGGACCACGGCAAATTTG 59.136 47.619 14.03 14.03 0.00 2.32
57 58 1.482593 TGTTTGGACCACGGCAAATTT 59.517 42.857 0.00 0.00 0.00 1.82
58 59 1.115467 TGTTTGGACCACGGCAAATT 58.885 45.000 0.00 0.00 0.00 1.82
59 60 1.115467 TTGTTTGGACCACGGCAAAT 58.885 45.000 0.00 0.00 0.00 2.32
60 61 1.115467 ATTGTTTGGACCACGGCAAA 58.885 45.000 0.00 0.00 0.00 3.68
61 62 1.982660 TATTGTTTGGACCACGGCAA 58.017 45.000 0.00 0.01 0.00 4.52
62 63 1.609555 GTTATTGTTTGGACCACGGCA 59.390 47.619 0.00 0.00 0.00 5.69
63 64 1.883926 AGTTATTGTTTGGACCACGGC 59.116 47.619 0.00 0.00 0.00 5.68
64 65 4.295051 CAAAGTTATTGTTTGGACCACGG 58.705 43.478 0.00 0.00 32.26 4.94
65 66 3.733727 GCAAAGTTATTGTTTGGACCACG 59.266 43.478 0.00 0.00 35.75 4.94
66 67 3.733727 CGCAAAGTTATTGTTTGGACCAC 59.266 43.478 0.00 0.00 35.75 4.16
67 68 3.797184 GCGCAAAGTTATTGTTTGGACCA 60.797 43.478 0.30 0.00 35.75 4.02
68 69 2.729360 GCGCAAAGTTATTGTTTGGACC 59.271 45.455 0.30 0.00 35.75 4.46
69 70 3.376540 TGCGCAAAGTTATTGTTTGGAC 58.623 40.909 8.16 0.00 35.75 4.02
70 71 3.717400 TGCGCAAAGTTATTGTTTGGA 57.283 38.095 8.16 0.00 35.75 3.53
71 72 3.123284 CCATGCGCAAAGTTATTGTTTGG 59.877 43.478 17.11 9.28 35.75 3.28
72 73 3.740321 ACCATGCGCAAAGTTATTGTTTG 59.260 39.130 17.11 2.71 37.85 2.93
73 74 3.988819 ACCATGCGCAAAGTTATTGTTT 58.011 36.364 17.11 0.00 0.00 2.83
74 75 3.658757 ACCATGCGCAAAGTTATTGTT 57.341 38.095 17.11 0.00 0.00 2.83
75 76 3.128589 CCTACCATGCGCAAAGTTATTGT 59.871 43.478 17.11 0.54 0.00 2.71
76 77 3.376859 TCCTACCATGCGCAAAGTTATTG 59.623 43.478 17.11 5.97 0.00 1.90
77 78 3.616219 TCCTACCATGCGCAAAGTTATT 58.384 40.909 17.11 0.00 0.00 1.40
78 79 3.275617 TCCTACCATGCGCAAAGTTAT 57.724 42.857 17.11 0.00 0.00 1.89
79 80 2.772077 TCCTACCATGCGCAAAGTTA 57.228 45.000 17.11 1.79 0.00 2.24
80 81 1.904287 TTCCTACCATGCGCAAAGTT 58.096 45.000 17.11 0.36 0.00 2.66
81 82 1.904287 TTTCCTACCATGCGCAAAGT 58.096 45.000 17.11 17.80 0.00 2.66
82 83 3.296322 TTTTTCCTACCATGCGCAAAG 57.704 42.857 17.11 11.88 0.00 2.77
83 84 3.951775 ATTTTTCCTACCATGCGCAAA 57.048 38.095 17.11 0.00 0.00 3.68
84 85 5.392767 TTTATTTTTCCTACCATGCGCAA 57.607 34.783 17.11 0.00 0.00 4.85
85 86 5.126222 TGATTTATTTTTCCTACCATGCGCA 59.874 36.000 14.96 14.96 0.00 6.09
86 87 5.587289 TGATTTATTTTTCCTACCATGCGC 58.413 37.500 0.00 0.00 0.00 6.09
87 88 5.687285 GCTGATTTATTTTTCCTACCATGCG 59.313 40.000 0.00 0.00 0.00 4.73
88 89 5.985530 GGCTGATTTATTTTTCCTACCATGC 59.014 40.000 0.00 0.00 0.00 4.06
89 90 7.111247 TGGCTGATTTATTTTTCCTACCATG 57.889 36.000 0.00 0.00 0.00 3.66
90 91 7.202029 CCATGGCTGATTTATTTTTCCTACCAT 60.202 37.037 0.00 0.00 33.42 3.55
91 92 6.098124 CCATGGCTGATTTATTTTTCCTACCA 59.902 38.462 0.00 0.00 0.00 3.25
92 93 6.098266 ACCATGGCTGATTTATTTTTCCTACC 59.902 38.462 13.04 0.00 0.00 3.18
93 94 6.980397 CACCATGGCTGATTTATTTTTCCTAC 59.020 38.462 13.04 0.00 0.00 3.18
94 95 6.406849 GCACCATGGCTGATTTATTTTTCCTA 60.407 38.462 13.04 0.00 0.00 2.94
95 96 5.627503 GCACCATGGCTGATTTATTTTTCCT 60.628 40.000 13.04 0.00 0.00 3.36
96 97 4.571984 GCACCATGGCTGATTTATTTTTCC 59.428 41.667 13.04 0.00 0.00 3.13
97 98 5.177326 TGCACCATGGCTGATTTATTTTTC 58.823 37.500 13.04 0.00 34.04 2.29
98 99 5.163281 TGCACCATGGCTGATTTATTTTT 57.837 34.783 13.04 0.00 34.04 1.94
99 100 4.822685 TGCACCATGGCTGATTTATTTT 57.177 36.364 13.04 0.00 34.04 1.82
100 101 4.822685 TTGCACCATGGCTGATTTATTT 57.177 36.364 13.04 0.00 34.04 1.40
101 102 4.020396 TGTTTGCACCATGGCTGATTTATT 60.020 37.500 13.04 0.00 34.04 1.40
102 103 3.514706 TGTTTGCACCATGGCTGATTTAT 59.485 39.130 13.04 0.00 34.04 1.40
103 104 2.896044 TGTTTGCACCATGGCTGATTTA 59.104 40.909 13.04 0.00 34.04 1.40
104 105 1.693062 TGTTTGCACCATGGCTGATTT 59.307 42.857 13.04 0.00 34.04 2.17
105 106 1.340088 TGTTTGCACCATGGCTGATT 58.660 45.000 13.04 0.00 34.04 2.57
106 107 1.340088 TTGTTTGCACCATGGCTGAT 58.660 45.000 13.04 0.00 34.04 2.90
107 108 1.340088 ATTGTTTGCACCATGGCTGA 58.660 45.000 13.04 0.00 34.04 4.26
108 109 3.316071 TTATTGTTTGCACCATGGCTG 57.684 42.857 13.04 10.72 34.04 4.85
109 110 3.324556 ACTTTATTGTTTGCACCATGGCT 59.675 39.130 13.04 0.00 34.04 4.75
110 111 3.663025 ACTTTATTGTTTGCACCATGGC 58.337 40.909 13.04 0.00 0.00 4.40
111 112 4.083908 GCAACTTTATTGTTTGCACCATGG 60.084 41.667 11.19 11.19 0.00 3.66
112 113 4.083908 GGCAACTTTATTGTTTGCACCATG 60.084 41.667 7.74 0.00 0.00 3.66
113 114 4.064388 GGCAACTTTATTGTTTGCACCAT 58.936 39.130 7.74 0.00 0.00 3.55
114 115 3.118629 TGGCAACTTTATTGTTTGCACCA 60.119 39.130 7.74 0.00 37.61 4.17
115 116 3.462021 TGGCAACTTTATTGTTTGCACC 58.538 40.909 7.74 0.00 37.61 5.01
116 117 4.749099 TCATGGCAACTTTATTGTTTGCAC 59.251 37.500 7.74 0.00 37.61 4.57
117 118 4.953667 TCATGGCAACTTTATTGTTTGCA 58.046 34.783 7.74 0.00 37.61 4.08
118 119 6.147492 TGAATCATGGCAACTTTATTGTTTGC 59.853 34.615 0.00 0.00 37.61 3.68
119 120 7.655236 TGAATCATGGCAACTTTATTGTTTG 57.345 32.000 0.00 0.00 37.61 2.93
120 121 8.674263 TTTGAATCATGGCAACTTTATTGTTT 57.326 26.923 0.00 0.00 37.61 2.83
121 122 8.674263 TTTTGAATCATGGCAACTTTATTGTT 57.326 26.923 0.00 0.00 37.61 2.83
122 123 8.851541 ATTTTGAATCATGGCAACTTTATTGT 57.148 26.923 0.00 0.00 37.61 2.71
131 132 8.828644 GCAAATGTATATTTTGAATCATGGCAA 58.171 29.630 12.70 0.00 34.34 4.52
132 133 7.441760 GGCAAATGTATATTTTGAATCATGGCA 59.558 33.333 12.70 0.00 34.34 4.92
133 134 7.441760 TGGCAAATGTATATTTTGAATCATGGC 59.558 33.333 12.70 0.00 34.34 4.40
134 135 8.890124 TGGCAAATGTATATTTTGAATCATGG 57.110 30.769 12.70 0.00 34.34 3.66
137 138 9.887629 ACAATGGCAAATGTATATTTTGAATCA 57.112 25.926 7.43 8.69 34.34 2.57
140 141 9.368674 CAGACAATGGCAAATGTATATTTTGAA 57.631 29.630 8.99 3.72 34.34 2.69
141 142 8.747471 TCAGACAATGGCAAATGTATATTTTGA 58.253 29.630 8.99 5.06 34.34 2.69
142 143 8.929827 TCAGACAATGGCAAATGTATATTTTG 57.070 30.769 8.99 6.71 34.34 2.44
143 144 9.941325 TTTCAGACAATGGCAAATGTATATTTT 57.059 25.926 8.99 0.00 34.34 1.82
155 156 9.598517 GGAAAATTTATATTTCAGACAATGGCA 57.401 29.630 0.00 0.00 38.29 4.92
156 157 9.598517 TGGAAAATTTATATTTCAGACAATGGC 57.401 29.630 0.00 0.00 38.29 4.40
160 161 9.598517 GCCATGGAAAATTTATATTTCAGACAA 57.401 29.630 18.40 0.00 38.29 3.18
161 162 8.203485 GGCCATGGAAAATTTATATTTCAGACA 58.797 33.333 18.40 0.00 38.29 3.41
162 163 8.203485 TGGCCATGGAAAATTTATATTTCAGAC 58.797 33.333 18.40 0.00 38.29 3.51
163 164 8.316497 TGGCCATGGAAAATTTATATTTCAGA 57.684 30.769 18.40 0.00 38.29 3.27
164 165 8.423349 TCTGGCCATGGAAAATTTATATTTCAG 58.577 33.333 18.40 2.35 38.29 3.02
165 166 8.316497 TCTGGCCATGGAAAATTTATATTTCA 57.684 30.769 18.40 0.00 38.29 2.69
166 167 9.612066 TTTCTGGCCATGGAAAATTTATATTTC 57.388 29.630 18.40 0.00 32.85 2.17
167 168 9.617523 CTTTCTGGCCATGGAAAATTTATATTT 57.382 29.630 18.40 0.00 35.49 1.40
168 169 8.771286 ACTTTCTGGCCATGGAAAATTTATATT 58.229 29.630 18.40 0.00 32.17 1.28
169 170 8.322905 ACTTTCTGGCCATGGAAAATTTATAT 57.677 30.769 18.40 0.00 32.17 0.86
170 171 7.732222 ACTTTCTGGCCATGGAAAATTTATA 57.268 32.000 18.40 0.00 32.17 0.98
171 172 6.625532 ACTTTCTGGCCATGGAAAATTTAT 57.374 33.333 18.40 3.13 32.17 1.40
172 173 6.432403 AACTTTCTGGCCATGGAAAATTTA 57.568 33.333 18.40 0.13 32.17 1.40
173 174 4.980339 ACTTTCTGGCCATGGAAAATTT 57.020 36.364 18.40 6.04 32.17 1.82
174 175 4.980339 AACTTTCTGGCCATGGAAAATT 57.020 36.364 18.40 13.13 32.17 1.82
175 176 5.484998 ACATAACTTTCTGGCCATGGAAAAT 59.515 36.000 18.40 8.30 32.17 1.82
176 177 4.837860 ACATAACTTTCTGGCCATGGAAAA 59.162 37.500 18.40 8.72 32.17 2.29
177 178 4.415596 ACATAACTTTCTGGCCATGGAAA 58.584 39.130 18.40 16.78 0.00 3.13
178 179 4.046286 ACATAACTTTCTGGCCATGGAA 57.954 40.909 18.40 4.21 0.00 3.53
179 180 3.737559 ACATAACTTTCTGGCCATGGA 57.262 42.857 18.40 0.00 0.00 3.41
180 181 3.885297 CCTACATAACTTTCTGGCCATGG 59.115 47.826 5.51 7.63 0.00 3.66
181 182 4.526970 ACCTACATAACTTTCTGGCCATG 58.473 43.478 5.51 0.43 0.00 3.66
182 183 4.227300 TGACCTACATAACTTTCTGGCCAT 59.773 41.667 5.51 0.00 0.00 4.40
183 184 3.585289 TGACCTACATAACTTTCTGGCCA 59.415 43.478 4.71 4.71 0.00 5.36
184 185 4.192317 CTGACCTACATAACTTTCTGGCC 58.808 47.826 0.00 0.00 0.00 5.36
185 186 4.192317 CCTGACCTACATAACTTTCTGGC 58.808 47.826 0.00 0.00 0.00 4.85
186 187 4.770795 CCCTGACCTACATAACTTTCTGG 58.229 47.826 0.00 0.00 0.00 3.86
187 188 4.192317 GCCCTGACCTACATAACTTTCTG 58.808 47.826 0.00 0.00 0.00 3.02
188 189 3.844211 TGCCCTGACCTACATAACTTTCT 59.156 43.478 0.00 0.00 0.00 2.52
189 190 4.216411 TGCCCTGACCTACATAACTTTC 57.784 45.455 0.00 0.00 0.00 2.62
190 191 4.650972 TTGCCCTGACCTACATAACTTT 57.349 40.909 0.00 0.00 0.00 2.66
191 192 4.650972 TTTGCCCTGACCTACATAACTT 57.349 40.909 0.00 0.00 0.00 2.66
192 193 4.018415 ACATTTGCCCTGACCTACATAACT 60.018 41.667 0.00 0.00 0.00 2.24
193 194 4.096382 CACATTTGCCCTGACCTACATAAC 59.904 45.833 0.00 0.00 0.00 1.89
194 195 4.263727 ACACATTTGCCCTGACCTACATAA 60.264 41.667 0.00 0.00 0.00 1.90
195 196 3.265737 ACACATTTGCCCTGACCTACATA 59.734 43.478 0.00 0.00 0.00 2.29
196 197 2.041620 ACACATTTGCCCTGACCTACAT 59.958 45.455 0.00 0.00 0.00 2.29
197 198 1.423541 ACACATTTGCCCTGACCTACA 59.576 47.619 0.00 0.00 0.00 2.74
198 199 2.200373 ACACATTTGCCCTGACCTAC 57.800 50.000 0.00 0.00 0.00 3.18
199 200 3.178046 TCTACACATTTGCCCTGACCTA 58.822 45.455 0.00 0.00 0.00 3.08
200 201 1.985159 TCTACACATTTGCCCTGACCT 59.015 47.619 0.00 0.00 0.00 3.85
201 202 2.488153 GTTCTACACATTTGCCCTGACC 59.512 50.000 0.00 0.00 0.00 4.02
202 203 3.146066 TGTTCTACACATTTGCCCTGAC 58.854 45.455 0.00 0.00 0.00 3.51
203 204 3.500448 TGTTCTACACATTTGCCCTGA 57.500 42.857 0.00 0.00 0.00 3.86
204 205 3.609175 CGTTGTTCTACACATTTGCCCTG 60.609 47.826 0.00 0.00 34.43 4.45
205 206 2.552315 CGTTGTTCTACACATTTGCCCT 59.448 45.455 0.00 0.00 34.43 5.19
206 207 2.351350 CCGTTGTTCTACACATTTGCCC 60.351 50.000 0.00 0.00 34.43 5.36
207 208 2.920647 GCCGTTGTTCTACACATTTGCC 60.921 50.000 0.00 0.00 34.43 4.52
208 209 2.031157 AGCCGTTGTTCTACACATTTGC 60.031 45.455 0.00 0.00 34.43 3.68
209 210 3.554524 CAGCCGTTGTTCTACACATTTG 58.445 45.455 0.00 0.00 34.43 2.32
210 211 2.552315 CCAGCCGTTGTTCTACACATTT 59.448 45.455 0.00 0.00 34.43 2.32
211 212 2.151202 CCAGCCGTTGTTCTACACATT 58.849 47.619 0.00 0.00 34.43 2.71
212 213 1.071699 ACCAGCCGTTGTTCTACACAT 59.928 47.619 0.00 0.00 34.43 3.21
213 214 0.466543 ACCAGCCGTTGTTCTACACA 59.533 50.000 0.00 0.00 0.00 3.72
214 215 0.865769 CACCAGCCGTTGTTCTACAC 59.134 55.000 0.00 0.00 0.00 2.90
215 216 0.466543 ACACCAGCCGTTGTTCTACA 59.533 50.000 0.00 0.00 0.00 2.74
216 217 1.145803 GACACCAGCCGTTGTTCTAC 58.854 55.000 0.00 0.00 0.00 2.59
217 218 0.753867 TGACACCAGCCGTTGTTCTA 59.246 50.000 0.00 0.00 0.00 2.10
218 219 0.107410 TTGACACCAGCCGTTGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
219 220 0.307760 CTTGACACCAGCCGTTGTTC 59.692 55.000 0.00 0.00 0.00 3.18
220 221 1.101049 CCTTGACACCAGCCGTTGTT 61.101 55.000 0.00 0.00 0.00 2.83
221 222 1.525995 CCTTGACACCAGCCGTTGT 60.526 57.895 0.00 0.00 0.00 3.32
222 223 0.606401 ATCCTTGACACCAGCCGTTG 60.606 55.000 0.00 0.00 0.00 4.10
223 224 0.981183 TATCCTTGACACCAGCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
224 225 1.204146 ATATCCTTGACACCAGCCGT 58.796 50.000 0.00 0.00 0.00 5.68
225 226 2.332063 AATATCCTTGACACCAGCCG 57.668 50.000 0.00 0.00 0.00 5.52
226 227 4.718961 ACATAATATCCTTGACACCAGCC 58.281 43.478 0.00 0.00 0.00 4.85
227 228 5.009010 CCAACATAATATCCTTGACACCAGC 59.991 44.000 0.00 0.00 0.00 4.85
228 229 5.532406 CCCAACATAATATCCTTGACACCAG 59.468 44.000 0.00 0.00 0.00 4.00
229 230 5.192722 TCCCAACATAATATCCTTGACACCA 59.807 40.000 0.00 0.00 0.00 4.17
230 231 5.690865 TCCCAACATAATATCCTTGACACC 58.309 41.667 0.00 0.00 0.00 4.16
231 232 6.238759 GCTTCCCAACATAATATCCTTGACAC 60.239 42.308 0.00 0.00 0.00 3.67
232 233 5.827797 GCTTCCCAACATAATATCCTTGACA 59.172 40.000 0.00 0.00 0.00 3.58
233 234 5.827797 TGCTTCCCAACATAATATCCTTGAC 59.172 40.000 0.00 0.00 0.00 3.18
234 235 6.012337 TGCTTCCCAACATAATATCCTTGA 57.988 37.500 0.00 0.00 0.00 3.02
235 236 6.906157 ATGCTTCCCAACATAATATCCTTG 57.094 37.500 0.00 0.00 0.00 3.61
236 237 7.759607 ACTATGCTTCCCAACATAATATCCTT 58.240 34.615 0.00 0.00 0.00 3.36
237 238 7.335127 ACTATGCTTCCCAACATAATATCCT 57.665 36.000 0.00 0.00 0.00 3.24
238 239 8.540388 TCTACTATGCTTCCCAACATAATATCC 58.460 37.037 0.00 0.00 0.00 2.59
239 240 9.944376 TTCTACTATGCTTCCCAACATAATATC 57.056 33.333 0.00 0.00 0.00 1.63
242 243 8.903820 GTTTTCTACTATGCTTCCCAACATAAT 58.096 33.333 0.00 0.00 0.00 1.28
243 244 7.885922 TGTTTTCTACTATGCTTCCCAACATAA 59.114 33.333 0.00 0.00 0.00 1.90
244 245 7.398829 TGTTTTCTACTATGCTTCCCAACATA 58.601 34.615 0.00 0.00 0.00 2.29
245 246 6.245408 TGTTTTCTACTATGCTTCCCAACAT 58.755 36.000 0.00 0.00 0.00 2.71
246 247 5.626142 TGTTTTCTACTATGCTTCCCAACA 58.374 37.500 0.00 0.00 0.00 3.33
247 248 6.569179 TTGTTTTCTACTATGCTTCCCAAC 57.431 37.500 0.00 0.00 0.00 3.77
248 249 7.589958 TTTTGTTTTCTACTATGCTTCCCAA 57.410 32.000 0.00 0.00 0.00 4.12
249 250 7.068839 TGTTTTTGTTTTCTACTATGCTTCCCA 59.931 33.333 0.00 0.00 0.00 4.37
250 251 7.430441 TGTTTTTGTTTTCTACTATGCTTCCC 58.570 34.615 0.00 0.00 0.00 3.97
251 252 8.752254 GTTGTTTTTGTTTTCTACTATGCTTCC 58.248 33.333 0.00 0.00 0.00 3.46
252 253 9.516314 AGTTGTTTTTGTTTTCTACTATGCTTC 57.484 29.630 0.00 0.00 0.00 3.86
253 254 9.516314 GAGTTGTTTTTGTTTTCTACTATGCTT 57.484 29.630 0.00 0.00 0.00 3.91
254 255 7.855904 CGAGTTGTTTTTGTTTTCTACTATGCT 59.144 33.333 0.00 0.00 0.00 3.79
255 256 7.112984 CCGAGTTGTTTTTGTTTTCTACTATGC 59.887 37.037 0.00 0.00 0.00 3.14
256 257 7.112984 GCCGAGTTGTTTTTGTTTTCTACTATG 59.887 37.037 0.00 0.00 0.00 2.23
257 258 7.136772 GCCGAGTTGTTTTTGTTTTCTACTAT 58.863 34.615 0.00 0.00 0.00 2.12
258 259 6.458615 GGCCGAGTTGTTTTTGTTTTCTACTA 60.459 38.462 0.00 0.00 0.00 1.82
259 260 5.337554 GCCGAGTTGTTTTTGTTTTCTACT 58.662 37.500 0.00 0.00 0.00 2.57
260 261 4.501559 GGCCGAGTTGTTTTTGTTTTCTAC 59.498 41.667 0.00 0.00 0.00 2.59
261 262 4.399934 AGGCCGAGTTGTTTTTGTTTTCTA 59.600 37.500 0.00 0.00 0.00 2.10
262 263 3.194755 AGGCCGAGTTGTTTTTGTTTTCT 59.805 39.130 0.00 0.00 0.00 2.52
263 264 3.517602 AGGCCGAGTTGTTTTTGTTTTC 58.482 40.909 0.00 0.00 0.00 2.29
264 265 3.603158 AGGCCGAGTTGTTTTTGTTTT 57.397 38.095 0.00 0.00 0.00 2.43
265 266 3.487879 CGTAGGCCGAGTTGTTTTTGTTT 60.488 43.478 0.00 0.00 39.56 2.83
266 267 2.032426 CGTAGGCCGAGTTGTTTTTGTT 59.968 45.455 0.00 0.00 39.56 2.83
267 268 1.600485 CGTAGGCCGAGTTGTTTTTGT 59.400 47.619 0.00 0.00 39.56 2.83
268 269 1.868498 TCGTAGGCCGAGTTGTTTTTG 59.132 47.619 0.00 0.00 41.60 2.44
269 270 2.243602 TCGTAGGCCGAGTTGTTTTT 57.756 45.000 0.00 0.00 41.60 1.94
270 271 3.993382 TCGTAGGCCGAGTTGTTTT 57.007 47.368 0.00 0.00 41.60 2.43
278 279 2.601067 TGGGTGTTCGTAGGCCGA 60.601 61.111 0.00 0.00 45.66 5.54
279 280 2.125673 CTGGGTGTTCGTAGGCCG 60.126 66.667 0.00 0.00 38.13 6.13
280 281 1.833787 TTCCTGGGTGTTCGTAGGCC 61.834 60.000 0.00 0.00 0.00 5.19
281 282 0.672711 GTTCCTGGGTGTTCGTAGGC 60.673 60.000 0.00 0.00 0.00 3.93
282 283 0.682852 TGTTCCTGGGTGTTCGTAGG 59.317 55.000 0.00 0.00 0.00 3.18
283 284 2.536761 TTGTTCCTGGGTGTTCGTAG 57.463 50.000 0.00 0.00 0.00 3.51
284 285 4.223255 TCATATTGTTCCTGGGTGTTCGTA 59.777 41.667 0.00 0.00 0.00 3.43
285 286 3.008594 TCATATTGTTCCTGGGTGTTCGT 59.991 43.478 0.00 0.00 0.00 3.85
286 287 3.605634 TCATATTGTTCCTGGGTGTTCG 58.394 45.455 0.00 0.00 0.00 3.95
287 288 4.399303 CCTTCATATTGTTCCTGGGTGTTC 59.601 45.833 0.00 0.00 0.00 3.18
288 289 4.202673 ACCTTCATATTGTTCCTGGGTGTT 60.203 41.667 0.00 0.00 0.00 3.32
289 290 3.333680 ACCTTCATATTGTTCCTGGGTGT 59.666 43.478 0.00 0.00 0.00 4.16
290 291 3.696051 CACCTTCATATTGTTCCTGGGTG 59.304 47.826 0.00 0.00 36.28 4.61
291 292 3.877735 GCACCTTCATATTGTTCCTGGGT 60.878 47.826 0.00 0.00 0.00 4.51
292 293 2.689983 GCACCTTCATATTGTTCCTGGG 59.310 50.000 0.00 0.00 0.00 4.45
293 294 3.355378 TGCACCTTCATATTGTTCCTGG 58.645 45.455 0.00 0.00 0.00 4.45
294 295 5.587388 AATGCACCTTCATATTGTTCCTG 57.413 39.130 0.00 0.00 0.00 3.86
295 296 6.662755 TCTAATGCACCTTCATATTGTTCCT 58.337 36.000 0.00 0.00 0.00 3.36
296 297 6.016777 CCTCTAATGCACCTTCATATTGTTCC 60.017 42.308 0.00 0.00 0.00 3.62
297 298 6.767902 TCCTCTAATGCACCTTCATATTGTTC 59.232 38.462 0.00 0.00 0.00 3.18
298 299 6.662755 TCCTCTAATGCACCTTCATATTGTT 58.337 36.000 0.00 0.00 0.00 2.83
299 300 6.252599 TCCTCTAATGCACCTTCATATTGT 57.747 37.500 0.00 0.00 0.00 2.71
300 301 7.309012 CCAATCCTCTAATGCACCTTCATATTG 60.309 40.741 0.00 0.00 0.00 1.90
301 302 6.718454 CCAATCCTCTAATGCACCTTCATATT 59.282 38.462 0.00 0.00 0.00 1.28
302 303 6.183361 ACCAATCCTCTAATGCACCTTCATAT 60.183 38.462 0.00 0.00 0.00 1.78
303 304 5.132648 ACCAATCCTCTAATGCACCTTCATA 59.867 40.000 0.00 0.00 0.00 2.15
304 305 4.079558 ACCAATCCTCTAATGCACCTTCAT 60.080 41.667 0.00 0.00 0.00 2.57
305 306 3.266772 ACCAATCCTCTAATGCACCTTCA 59.733 43.478 0.00 0.00 0.00 3.02
306 307 3.891049 ACCAATCCTCTAATGCACCTTC 58.109 45.455 0.00 0.00 0.00 3.46
307 308 4.263905 TGAACCAATCCTCTAATGCACCTT 60.264 41.667 0.00 0.00 0.00 3.50
308 309 3.266772 TGAACCAATCCTCTAATGCACCT 59.733 43.478 0.00 0.00 0.00 4.00
309 310 3.620488 TGAACCAATCCTCTAATGCACC 58.380 45.455 0.00 0.00 0.00 5.01
310 311 4.883585 TCATGAACCAATCCTCTAATGCAC 59.116 41.667 0.00 0.00 0.00 4.57
311 312 5.114764 TCATGAACCAATCCTCTAATGCA 57.885 39.130 0.00 0.00 0.00 3.96
312 313 5.106791 CGATCATGAACCAATCCTCTAATGC 60.107 44.000 0.00 0.00 0.00 3.56
313 314 5.994054 ACGATCATGAACCAATCCTCTAATG 59.006 40.000 0.00 0.00 0.00 1.90
314 315 6.179906 ACGATCATGAACCAATCCTCTAAT 57.820 37.500 0.00 0.00 0.00 1.73
315 316 5.614324 ACGATCATGAACCAATCCTCTAA 57.386 39.130 0.00 0.00 0.00 2.10
316 317 5.614324 AACGATCATGAACCAATCCTCTA 57.386 39.130 0.00 0.00 0.00 2.43
317 318 4.494091 AACGATCATGAACCAATCCTCT 57.506 40.909 0.00 0.00 0.00 3.69
318 319 4.511826 GGTAACGATCATGAACCAATCCTC 59.488 45.833 8.38 0.00 0.00 3.71
319 320 4.080582 TGGTAACGATCATGAACCAATCCT 60.081 41.667 12.78 0.00 37.29 3.24
320 321 4.196193 TGGTAACGATCATGAACCAATCC 58.804 43.478 12.78 6.96 37.29 3.01
321 322 5.811399 TTGGTAACGATCATGAACCAATC 57.189 39.130 20.22 4.33 43.44 2.67
323 324 4.647611 AGTTGGTAACGATCATGAACCAA 58.352 39.130 20.22 20.22 45.47 3.67
324 325 4.250464 GAGTTGGTAACGATCATGAACCA 58.750 43.478 11.41 11.41 38.42 3.67
325 326 3.621715 GGAGTTGGTAACGATCATGAACC 59.378 47.826 0.00 2.63 42.51 3.62
326 327 3.306166 CGGAGTTGGTAACGATCATGAAC 59.694 47.826 0.00 0.00 42.51 3.18
327 328 3.193903 TCGGAGTTGGTAACGATCATGAA 59.806 43.478 0.00 0.00 42.51 2.57
328 329 2.756207 TCGGAGTTGGTAACGATCATGA 59.244 45.455 0.00 0.00 42.51 3.07
329 330 3.116300 CTCGGAGTTGGTAACGATCATG 58.884 50.000 0.00 0.00 42.51 3.07
330 331 2.758979 ACTCGGAGTTGGTAACGATCAT 59.241 45.455 4.45 0.00 42.51 2.45
331 332 2.165167 ACTCGGAGTTGGTAACGATCA 58.835 47.619 4.45 0.00 42.51 2.92
332 333 2.935481 ACTCGGAGTTGGTAACGATC 57.065 50.000 4.45 0.00 42.51 3.69
333 334 3.698040 ACATACTCGGAGTTGGTAACGAT 59.302 43.478 16.95 0.00 42.51 3.73
334 335 3.084039 ACATACTCGGAGTTGGTAACGA 58.916 45.455 16.95 0.00 42.51 3.85
335 336 3.498927 ACATACTCGGAGTTGGTAACG 57.501 47.619 16.95 0.00 42.51 3.18
336 337 4.097589 AGCTACATACTCGGAGTTGGTAAC 59.902 45.833 16.95 13.35 0.00 2.50
337 338 4.097437 CAGCTACATACTCGGAGTTGGTAA 59.903 45.833 16.95 0.00 0.00 2.85
338 339 3.630769 CAGCTACATACTCGGAGTTGGTA 59.369 47.826 16.95 16.35 0.00 3.25
339 340 2.427453 CAGCTACATACTCGGAGTTGGT 59.573 50.000 16.95 16.11 0.00 3.67
340 341 2.223829 CCAGCTACATACTCGGAGTTGG 60.224 54.545 16.95 11.79 34.54 3.77
341 342 2.799917 GCCAGCTACATACTCGGAGTTG 60.800 54.545 16.95 15.46 0.00 3.16
342 343 1.409427 GCCAGCTACATACTCGGAGTT 59.591 52.381 16.95 0.63 0.00 3.01
343 344 1.033574 GCCAGCTACATACTCGGAGT 58.966 55.000 15.95 15.95 0.00 3.85
344 345 0.315568 GGCCAGCTACATACTCGGAG 59.684 60.000 2.83 2.83 0.00 4.63
345 346 0.106167 AGGCCAGCTACATACTCGGA 60.106 55.000 5.01 0.00 0.00 4.55
346 347 0.753262 AAGGCCAGCTACATACTCGG 59.247 55.000 5.01 0.00 0.00 4.63
347 348 1.409064 TGAAGGCCAGCTACATACTCG 59.591 52.381 5.01 0.00 0.00 4.18
348 349 3.323403 AGATGAAGGCCAGCTACATACTC 59.677 47.826 5.01 0.00 40.20 2.59
349 350 3.312890 AGATGAAGGCCAGCTACATACT 58.687 45.455 5.01 0.76 40.20 2.12
350 351 3.760580 AGATGAAGGCCAGCTACATAC 57.239 47.619 5.01 0.00 40.20 2.39
351 352 3.969976 AGAAGATGAAGGCCAGCTACATA 59.030 43.478 5.01 0.00 41.31 2.29
352 353 2.776536 AGAAGATGAAGGCCAGCTACAT 59.223 45.455 5.01 2.50 41.31 2.29
353 354 2.191400 AGAAGATGAAGGCCAGCTACA 58.809 47.619 5.01 0.00 41.31 2.74
356 357 2.895242 AAAGAAGATGAAGGCCAGCT 57.105 45.000 5.01 0.00 44.60 4.24
375 376 2.359354 CCCCGCACGGTGATGAAA 60.359 61.111 13.29 0.00 0.00 2.69
399 400 1.642215 CGAGGACGACGACGATGAT 59.358 57.895 15.32 0.00 42.66 2.45
427 428 0.172578 CGTACTTGGCAGATCGACCA 59.827 55.000 5.71 5.71 0.00 4.02
441 442 3.450115 GAGCCAGGCCGTCGTACT 61.450 66.667 8.22 0.00 0.00 2.73
468 469 1.401318 AACCAGTGCAAATGCCAGCA 61.401 50.000 2.46 0.00 41.18 4.41
477 478 1.072331 GAGGAGGAAGAACCAGTGCAA 59.928 52.381 0.00 0.00 42.04 4.08
550 554 1.368641 CGCCATGCTGCAAACTACTA 58.631 50.000 6.36 0.00 0.00 1.82
555 559 2.126346 GACCGCCATGCTGCAAAC 60.126 61.111 6.36 0.00 0.00 2.93
556 560 1.534336 AATGACCGCCATGCTGCAAA 61.534 50.000 6.36 0.00 35.24 3.68
561 565 0.107456 CTCCTAATGACCGCCATGCT 59.893 55.000 0.00 0.00 35.24 3.79
565 569 2.908015 GGCTCCTAATGACCGCCA 59.092 61.111 0.00 0.00 40.41 5.69
583 587 3.510360 TGGTCCAAGTACAAGAGCTACTC 59.490 47.826 0.00 0.00 0.00 2.59
607 611 2.492484 ACGACGCTAAACAGAGGAAGAT 59.508 45.455 0.00 0.00 0.00 2.40
637 641 0.033796 CACTGGGCCATGAATCAGGT 60.034 55.000 6.72 0.00 0.00 4.00
904 909 2.961741 CAATCTTCCTCCTCTCCATCGA 59.038 50.000 0.00 0.00 0.00 3.59
954 961 1.004745 CTCACCTTGCCCACCACTATT 59.995 52.381 0.00 0.00 0.00 1.73
968 975 2.889045 TCGCGCCTATATTTACTCACCT 59.111 45.455 0.00 0.00 0.00 4.00
1009 1018 6.828273 AGCATGTAGTTAAAATGGCATGACTA 59.172 34.615 0.00 5.08 36.71 2.59
1091 1100 1.133853 GCCCATCTCATTGCTCTCCTT 60.134 52.381 0.00 0.00 0.00 3.36
1168 1177 2.360475 GGCAGCACAACCTCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
1213 1225 2.915659 TCGTCGCCAACCTCAGGT 60.916 61.111 0.00 0.00 37.65 4.00
1241 1253 4.738811 CGCTTGTTGCTAGGAGACTCCTA 61.739 52.174 26.39 26.39 45.81 2.94
1247 1259 1.079127 GGCGCTTGTTGCTAGGAGA 60.079 57.895 7.64 0.00 40.11 3.71
1252 1267 2.975248 TTGCGGCGCTTGTTGCTA 60.975 55.556 33.26 6.83 40.11 3.49
1273 1288 1.306141 CTCCTCCTGGTAGTGGCCA 60.306 63.158 0.00 0.00 36.97 5.36
1285 1300 1.988982 GAGTTGGGCCATCCTCCTCC 61.989 65.000 18.36 0.00 36.20 4.30
1433 1449 1.421485 CATTCGTCAGCTTCACCGC 59.579 57.895 0.00 0.00 0.00 5.68
1487 1503 2.234661 TCTTGATCTGATGAACGGCTGT 59.765 45.455 0.00 0.00 0.00 4.40
1524 1540 3.006967 GTCAGGAGTGAGGAGCTTTAACA 59.993 47.826 0.00 0.00 31.53 2.41
1528 1544 1.346068 GTGTCAGGAGTGAGGAGCTTT 59.654 52.381 0.00 0.00 31.53 3.51
1578 1595 3.815401 ACACTTGTTGACAGCCTCAATAC 59.185 43.478 0.00 0.00 41.10 1.89
1579 1596 3.814842 CACACTTGTTGACAGCCTCAATA 59.185 43.478 0.00 0.00 41.10 1.90
1587 1604 1.334869 GCTTCCCACACTTGTTGACAG 59.665 52.381 0.00 0.00 0.00 3.51
1619 1636 2.797278 CCTACTCCTTGGCGGCGAT 61.797 63.158 12.98 0.00 0.00 4.58
1806 1823 2.301870 TGCCTCGTGGATCAACTACTTT 59.698 45.455 7.92 0.00 34.57 2.66
1811 1828 0.904865 TCCTGCCTCGTGGATCAACT 60.905 55.000 7.92 0.00 34.57 3.16
1812 1829 0.460987 CTCCTGCCTCGTGGATCAAC 60.461 60.000 7.92 0.00 34.57 3.18
1813 1830 1.617018 CCTCCTGCCTCGTGGATCAA 61.617 60.000 7.92 0.00 34.57 2.57
1814 1831 2.060383 CCTCCTGCCTCGTGGATCA 61.060 63.158 7.92 0.00 34.57 2.92
1815 1832 2.801631 CCCTCCTGCCTCGTGGATC 61.802 68.421 7.92 0.00 34.57 3.36
1816 1833 2.765807 CCCTCCTGCCTCGTGGAT 60.766 66.667 7.92 0.00 34.57 3.41
1881 1901 2.305858 AAGAACTAGGTCGGTGGAGT 57.694 50.000 1.15 0.00 0.00 3.85
1940 1962 2.093711 GTGGAAAAGTGGTTTGTGGCTT 60.094 45.455 0.00 0.00 0.00 4.35
2072 2110 5.295152 CGAAGGTTTGTGGTAAACTACTCT 58.705 41.667 0.00 0.00 0.00 3.24
2134 2175 6.256757 CGAGGAGAACTTTGTATTGAGAATCC 59.743 42.308 0.00 0.00 0.00 3.01
2356 2397 1.210478 GCTAAGCACTTCTCCCATGGA 59.790 52.381 15.22 0.00 0.00 3.41
2379 2420 1.464997 GACACCGCAAGATTGAACTCC 59.535 52.381 0.00 0.00 43.02 3.85
2381 2422 1.072331 AGGACACCGCAAGATTGAACT 59.928 47.619 0.00 0.00 43.02 3.01
2423 2464 5.220970 GGCAACAATATAATACGTGCCTTGT 60.221 40.000 0.00 0.00 37.01 3.16
2472 2513 9.810545 GAGGGATAAACTCAAGCTATATGATAC 57.189 37.037 0.00 0.00 35.09 2.24
2481 2522 5.663106 TGATGTAGAGGGATAAACTCAAGCT 59.337 40.000 0.00 0.00 37.43 3.74
2517 2558 7.709269 TCATAAGAATGGAGTAACGCATTAC 57.291 36.000 0.00 0.00 36.41 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.