Multiple sequence alignment - TraesCS4B01G340600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G340600 chr4B 100.000 4312 0 0 1 4312 633765734 633761423 0 7963
1 TraesCS4B01G340600 chr5A 94.118 3672 141 30 1 3631 673778754 673775117 0 5515
2 TraesCS4B01G340600 chr5A 92.555 685 26 12 3627 4307 673775087 673774424 0 959
3 TraesCS4B01G340600 chr4D 93.962 3660 115 28 1 3631 494272838 494269256 0 5437
4 TraesCS4B01G340600 chr4D 93.023 688 27 10 3627 4312 494269226 494268558 0 985


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G340600 chr4B 633761423 633765734 4311 True 7963 7963 100.0000 1 4312 1 chr4B.!!$R1 4311
1 TraesCS4B01G340600 chr5A 673774424 673778754 4330 True 3237 5515 93.3365 1 4307 2 chr5A.!!$R1 4306
2 TraesCS4B01G340600 chr4D 494268558 494272838 4280 True 3211 5437 93.4925 1 4312 2 chr4D.!!$R1 4311

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 193 0.179062 CCACAGCTCTAGCCATGACC 60.179 60.0 0.0 0.00 43.38 4.02 F
318 333 0.525668 GCATAGACAGGACGTCCACG 60.526 60.0 35.0 26.63 46.69 4.94 F
751 776 0.537143 TGCAGCACAGAAATTCCCGT 60.537 50.0 0.0 0.00 0.00 5.28 F
2261 2316 0.471191 CTGGATGCTGCCCTGTATCA 59.529 55.0 0.0 0.00 31.99 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2056 0.680921 GCTTGGTATCAGGGCAAGCA 60.681 55.0 2.73 0.0 45.18 3.91 R
2075 2130 1.350071 CTCTATGCTGGCCTCTCCAT 58.650 55.0 3.32 3.8 45.50 3.41 R
2641 2697 1.181786 CCGTTGCACCCATTTACCAT 58.818 50.0 0.00 0.0 0.00 3.55 R
3342 3400 2.031333 GGTTGCAGAACTGAAAGCAGAG 60.031 50.0 16.75 0.0 44.04 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 163 5.714806 TGGAAACATGGGAATAAGTTCCTTC 59.285 40.000 7.10 3.23 44.40 3.46
183 193 0.179062 CCACAGCTCTAGCCATGACC 60.179 60.000 0.00 0.00 43.38 4.02
259 269 4.122776 CAGTAGGTGCACATCTACAATCC 58.877 47.826 25.58 5.50 45.21 3.01
318 333 0.525668 GCATAGACAGGACGTCCACG 60.526 60.000 35.00 26.63 46.69 4.94
339 354 2.495939 GCGTATCTTGCACTTTGTTCG 58.504 47.619 0.00 0.00 0.00 3.95
353 368 5.694910 CACTTTGTTCGCCGGTATATATCTT 59.305 40.000 1.90 0.00 0.00 2.40
354 369 6.202188 CACTTTGTTCGCCGGTATATATCTTT 59.798 38.462 1.90 0.00 0.00 2.52
355 370 6.202188 ACTTTGTTCGCCGGTATATATCTTTG 59.798 38.462 1.90 0.00 0.00 2.77
356 371 5.456548 TGTTCGCCGGTATATATCTTTGA 57.543 39.130 1.90 0.00 0.00 2.69
357 372 6.032956 TGTTCGCCGGTATATATCTTTGAT 57.967 37.500 1.90 0.00 0.00 2.57
358 373 6.097356 TGTTCGCCGGTATATATCTTTGATC 58.903 40.000 1.90 0.00 0.00 2.92
359 374 5.907866 TCGCCGGTATATATCTTTGATCA 57.092 39.130 1.90 0.00 0.00 2.92
389 404 4.865865 TGCATGACACAACCGACA 57.134 50.000 0.00 0.00 0.00 4.35
463 478 4.675933 CGCTTCCATTTCATCTGCAAATGA 60.676 41.667 0.00 0.00 41.81 2.57
529 544 7.145932 AGATAACAGATTGTACAAAGCCAAC 57.854 36.000 13.23 1.30 0.00 3.77
643 659 4.389374 ACGGTCAAATGGCTAATATCAGG 58.611 43.478 0.00 0.00 0.00 3.86
715 740 4.574674 TGATGCAGAAATAAGACACCCT 57.425 40.909 0.00 0.00 0.00 4.34
751 776 0.537143 TGCAGCACAGAAATTCCCGT 60.537 50.000 0.00 0.00 0.00 5.28
862 904 1.141053 GCCATAACCCATCTTCCTCGT 59.859 52.381 0.00 0.00 0.00 4.18
909 951 1.437986 CGTCCGGAACCATCTCTCC 59.562 63.158 5.23 0.00 0.00 3.71
915 957 1.127343 GGAACCATCTCTCCTCTGGG 58.873 60.000 0.00 0.00 34.21 4.45
949 991 1.076024 AGCTCCAAGGAATTTGCTCCA 59.924 47.619 0.00 0.00 38.02 3.86
955 997 3.070015 CCAAGGAATTTGCTCCAACAAGT 59.930 43.478 0.00 0.00 38.02 3.16
956 998 4.443315 CCAAGGAATTTGCTCCAACAAGTT 60.443 41.667 0.00 0.00 38.02 2.66
970 1012 2.320587 AAGTTTGCAGCGCCGAGAG 61.321 57.895 2.29 0.00 0.00 3.20
982 1024 1.807886 CCGAGAGAATCCGGTCGTT 59.192 57.895 0.00 0.00 41.82 3.85
1200 1242 3.266772 ACTCAATGGCCATCTTAGGTGAA 59.733 43.478 21.08 2.21 0.00 3.18
1243 1285 9.927081 ACAATAATCTTAGGTGGAATCTTTCAT 57.073 29.630 0.00 0.00 0.00 2.57
1276 1318 2.412770 GCATTCAAAAGCACCAAATCGG 59.587 45.455 0.00 0.00 42.50 4.18
1316 1358 3.578716 CTGAACCTGAGGAAGTACCAGAA 59.421 47.826 4.99 0.00 42.04 3.02
1548 1599 9.155975 TCTTTGATCCTCTCTTTATTCTTTTCG 57.844 33.333 0.00 0.00 0.00 3.46
1741 1796 5.758296 TGTACTCACATGTTTTCTCACCTTC 59.242 40.000 0.00 0.00 0.00 3.46
1801 1856 5.463392 GCTCACATACTTGATTTCTGCGATA 59.537 40.000 0.00 0.00 0.00 2.92
1806 1861 3.596214 ACTTGATTTCTGCGATAACGGT 58.404 40.909 0.00 0.00 40.15 4.83
1966 2021 1.002087 CGTTACCCTGCTTTGACTCCT 59.998 52.381 0.00 0.00 0.00 3.69
1967 2022 2.701107 GTTACCCTGCTTTGACTCCTC 58.299 52.381 0.00 0.00 0.00 3.71
1968 2023 1.276622 TACCCTGCTTTGACTCCTCC 58.723 55.000 0.00 0.00 0.00 4.30
1983 2038 1.042559 CCTCCACTCTCTCAGCCCTC 61.043 65.000 0.00 0.00 0.00 4.30
2001 2056 3.258971 CTCCTCGAGGAAGAGCAAAAT 57.741 47.619 32.94 0.00 44.91 1.82
2111 2166 0.810648 GAGCAATTCGGCCAATCACA 59.189 50.000 2.24 0.00 0.00 3.58
2145 2200 2.803155 TAGCTGAACCCTTGCTGGCG 62.803 60.000 0.00 0.00 37.62 5.69
2148 2203 1.372087 CTGAACCCTTGCTGGCGATC 61.372 60.000 0.00 0.00 0.00 3.69
2249 2304 0.536006 GGGTACATGAGCCTGGATGC 60.536 60.000 0.00 0.00 42.96 3.91
2261 2316 0.471191 CTGGATGCTGCCCTGTATCA 59.529 55.000 0.00 0.00 31.99 2.15
2283 2338 2.449464 CAAACAGGAGCAATGATCCCA 58.551 47.619 14.62 0.00 39.17 4.37
2374 2429 6.406961 GGTGGTGTTAGATATGAGTGACATCA 60.407 42.308 0.00 0.00 40.07 3.07
2447 2502 1.686236 ACAGATTCCATGAAGGGGGT 58.314 50.000 0.00 0.00 38.24 4.95
2448 2503 1.566231 ACAGATTCCATGAAGGGGGTC 59.434 52.381 0.00 0.00 38.24 4.46
2453 2508 2.352561 TCCATGAAGGGGGTCTACAA 57.647 50.000 0.00 0.00 38.24 2.41
2547 2603 1.444895 CAAACTTCCATGCAGCGCC 60.445 57.895 2.29 0.00 0.00 6.53
2567 2623 4.379082 CGCCGGTAAAAGAAAAGTGCTTAT 60.379 41.667 1.90 0.00 0.00 1.73
2571 2627 7.201705 GCCGGTAAAAGAAAAGTGCTTATCTAT 60.202 37.037 1.90 0.00 0.00 1.98
3342 3400 2.111041 GCACAAACTGAAGTCTGTGC 57.889 50.000 22.15 22.15 44.17 4.57
3356 3414 2.222911 GTCTGTGCTCTGCTTTCAGTTC 59.777 50.000 0.00 0.00 41.10 3.01
3512 3570 4.325028 TTGCCGTTCTTAACAGTGAGTA 57.675 40.909 0.00 0.00 0.00 2.59
3609 3667 4.398044 AGTTACCCAAACTATTCGCCATTG 59.602 41.667 0.00 0.00 46.85 2.82
3662 3754 6.285790 GGCAACTTTGGACAATGTAAAAAG 57.714 37.500 14.86 14.86 34.70 2.27
3663 3755 5.277297 GGCAACTTTGGACAATGTAAAAAGC 60.277 40.000 15.85 10.15 32.33 3.51
3664 3756 5.523552 GCAACTTTGGACAATGTAAAAAGCT 59.476 36.000 15.85 5.63 32.33 3.74
3666 3758 6.463995 ACTTTGGACAATGTAAAAAGCTGA 57.536 33.333 15.85 0.00 32.33 4.26
3668 3760 7.500141 ACTTTGGACAATGTAAAAAGCTGAAT 58.500 30.769 15.85 0.00 32.33 2.57
3669 3761 8.637986 ACTTTGGACAATGTAAAAAGCTGAATA 58.362 29.630 15.85 0.00 32.33 1.75
3671 3763 8.810652 TTGGACAATGTAAAAAGCTGAATAAC 57.189 30.769 0.00 0.00 0.00 1.89
3672 3764 7.946207 TGGACAATGTAAAAAGCTGAATAACA 58.054 30.769 0.00 0.00 0.00 2.41
3673 3765 7.865385 TGGACAATGTAAAAAGCTGAATAACAC 59.135 33.333 0.00 0.00 0.00 3.32
3674 3766 8.082242 GGACAATGTAAAAAGCTGAATAACACT 58.918 33.333 0.00 0.00 0.00 3.55
3694 3788 5.652891 ACACTCAGTACAGAGAATCCGTAAT 59.347 40.000 20.88 0.00 38.98 1.89
3701 3795 7.005296 AGTACAGAGAATCCGTAATATCTGGT 58.995 38.462 0.00 0.00 36.39 4.00
3975 4069 1.670811 GACTCACATAATGCGGTTGGG 59.329 52.381 0.00 0.00 0.00 4.12
4023 4117 7.051000 GGCAAAATGGGCTTATAACCAATTAA 58.949 34.615 0.00 0.00 40.73 1.40
4135 4229 4.011023 TGAGAAAAACAAACGGGACAGAA 58.989 39.130 0.00 0.00 0.00 3.02
4148 4242 3.499563 CGGGACAGAAGAGATCCTCCTAT 60.500 52.174 0.00 0.00 32.70 2.57
4149 4243 4.263550 CGGGACAGAAGAGATCCTCCTATA 60.264 50.000 0.00 0.00 32.70 1.31
4182 4276 3.919834 ACTATTCTAGGCCGAACCCTTA 58.080 45.455 0.00 0.00 40.58 2.69
4268 4364 7.545615 CAGGCCCAAGATAAAGAAATAACAAAC 59.454 37.037 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 3.395639 ACGTTTGATTGCTTCGTCCTTA 58.604 40.909 0.00 0.00 0.00 2.69
54 56 2.218603 ACGTTTGATTGCTTCGTCCTT 58.781 42.857 0.00 0.00 0.00 3.36
153 163 0.678048 GAGCTGTGGGTGCCTAAAGG 60.678 60.000 0.00 0.00 38.53 3.11
183 193 1.532868 CAGGCAAGAAAAGGACGTCAG 59.467 52.381 18.91 0.00 0.00 3.51
259 269 3.193263 GGCTACTGTCTGACATGTCATG 58.807 50.000 28.00 20.60 39.13 3.07
318 333 2.724839 CGAACAAAGTGCAAGATACGCC 60.725 50.000 0.00 0.00 0.00 5.68
321 336 2.724839 CGGCGAACAAAGTGCAAGATAC 60.725 50.000 0.00 0.00 0.00 2.24
339 354 6.631016 TGAGTGATCAAAGATATATACCGGC 58.369 40.000 0.00 0.00 0.00 6.13
353 368 1.135112 CACGGACGGATGAGTGATCAA 60.135 52.381 0.00 0.00 36.79 2.57
354 369 0.455815 CACGGACGGATGAGTGATCA 59.544 55.000 0.00 0.00 36.79 2.92
355 370 0.872021 GCACGGACGGATGAGTGATC 60.872 60.000 0.00 0.00 36.79 2.92
356 371 1.141881 GCACGGACGGATGAGTGAT 59.858 57.895 0.00 0.00 36.79 3.06
357 372 1.604147 ATGCACGGACGGATGAGTGA 61.604 55.000 0.00 0.00 36.79 3.41
358 373 1.153568 ATGCACGGACGGATGAGTG 60.154 57.895 0.00 0.00 37.63 3.51
359 374 1.153568 CATGCACGGACGGATGAGT 60.154 57.895 0.00 0.00 36.90 3.41
389 404 7.736691 TGGATTGATCTGGAAGTATCCTATTCT 59.263 37.037 0.00 0.00 46.70 2.40
416 431 5.220303 GCGATCGCTTAATCCTGTGATTATC 60.220 44.000 31.94 0.00 41.78 1.75
446 461 8.468720 TTGTATTGTCATTTGCAGATGAAATG 57.531 30.769 20.48 11.16 40.64 2.32
715 740 0.659427 GCAGATGCTATTCTTGCGCA 59.341 50.000 5.66 5.66 38.21 6.09
875 917 1.338200 GGACGGAGCTGTGAAAGATGT 60.338 52.381 0.00 0.00 0.00 3.06
876 918 1.363744 GGACGGAGCTGTGAAAGATG 58.636 55.000 0.00 0.00 0.00 2.90
909 951 1.142870 TGTTCTGTTGGTTCCCCAGAG 59.857 52.381 7.86 0.00 43.15 3.35
915 957 1.239347 GGAGCTGTTCTGTTGGTTCC 58.761 55.000 0.00 0.00 0.00 3.62
931 973 2.892852 TGTTGGAGCAAATTCCTTGGAG 59.107 45.455 0.00 0.00 38.12 3.86
949 991 2.026014 CGGCGCTGCAAACTTGTT 59.974 55.556 7.64 0.00 0.00 2.83
955 997 1.361668 GATTCTCTCGGCGCTGCAAA 61.362 55.000 12.58 3.10 0.00 3.68
956 998 1.811266 GATTCTCTCGGCGCTGCAA 60.811 57.895 12.58 0.15 0.00 4.08
970 1012 0.165944 CAACAGCAACGACCGGATTC 59.834 55.000 9.46 0.00 0.00 2.52
982 1024 1.204704 CATAGTCGGTCCTCAACAGCA 59.795 52.381 0.00 0.00 0.00 4.41
1200 1242 9.929180 AGATTATTGTATCGTACATGCAGTTAT 57.071 29.630 0.00 0.00 38.68 1.89
1276 1318 7.758528 CAGGTTCAGAATTGAAAGATTTCATCC 59.241 37.037 8.72 2.44 45.65 3.51
1561 1612 5.972107 AGTTAACCGAGAAAGCAGTACTA 57.028 39.130 0.88 0.00 0.00 1.82
1741 1796 4.141711 TGAGATCCCCTCCTGTAAATTTCG 60.142 45.833 0.00 0.00 41.25 3.46
1801 1856 1.553704 GAGGTTATCACCCAGACCGTT 59.446 52.381 0.00 0.00 45.63 4.44
1806 1861 1.559682 GCAAGGAGGTTATCACCCAGA 59.440 52.381 0.00 0.00 45.63 3.86
1966 2021 1.000993 GGAGGGCTGAGAGAGTGGA 59.999 63.158 0.00 0.00 0.00 4.02
1967 2022 1.001503 AGGAGGGCTGAGAGAGTGG 59.998 63.158 0.00 0.00 0.00 4.00
1968 2023 1.383456 CGAGGAGGGCTGAGAGAGTG 61.383 65.000 0.00 0.00 0.00 3.51
1983 2038 1.399791 GCATTTTGCTCTTCCTCGAGG 59.600 52.381 26.32 26.32 40.96 4.63
2001 2056 0.680921 GCTTGGTATCAGGGCAAGCA 60.681 55.000 2.73 0.00 45.18 3.91
2073 2128 2.106166 CTCTATGCTGGCCTCTCCATTT 59.894 50.000 3.32 0.00 45.50 2.32
2075 2130 1.350071 CTCTATGCTGGCCTCTCCAT 58.650 55.000 3.32 3.80 45.50 3.41
2076 2131 1.406065 GCTCTATGCTGGCCTCTCCA 61.406 60.000 3.32 0.00 44.18 3.86
2111 2166 2.091055 TCAGCTATACTCTGGGGAAGCT 60.091 50.000 0.00 0.00 40.79 3.74
2145 2200 2.846039 CAGTGCTGCTCATTTGGATC 57.154 50.000 0.00 0.00 0.00 3.36
2249 2304 1.741706 CTGTTTGCTGATACAGGGCAG 59.258 52.381 0.00 0.00 38.44 4.85
2261 2316 2.097825 GGATCATTGCTCCTGTTTGCT 58.902 47.619 0.00 0.00 0.00 3.91
2283 2338 4.085357 TGATGCCTCTGTGTTGTAACTT 57.915 40.909 0.00 0.00 0.00 2.66
2374 2429 5.072129 TCCATCATCCTCTGATACTCACT 57.928 43.478 0.00 0.00 42.91 3.41
2447 2502 4.309933 CATCTCTGCAGTGTTGTTGTAGA 58.690 43.478 14.67 6.01 36.18 2.59
2448 2503 4.658713 CATCTCTGCAGTGTTGTTGTAG 57.341 45.455 14.67 0.00 0.00 2.74
2641 2697 1.181786 CCGTTGCACCCATTTACCAT 58.818 50.000 0.00 0.00 0.00 3.55
2652 2708 3.670377 GGTGGGCTTCCGTTGCAC 61.670 66.667 0.00 0.00 0.00 4.57
2811 2867 4.471904 TGTCTGAGACGCTCCATATTTT 57.528 40.909 8.23 0.00 34.95 1.82
2812 2868 4.471904 TTGTCTGAGACGCTCCATATTT 57.528 40.909 8.23 0.00 34.95 1.40
2823 2879 1.876322 AGCAGTGCTTTGTCTGAGAC 58.124 50.000 13.14 5.47 33.89 3.36
3054 3111 9.249053 TGATCATTAAATAAACTGGGCTGTTTA 57.751 29.630 14.80 14.80 43.63 2.01
3164 3222 8.135529 ACAAGCATGAACCTTAGTTTAGAAAAC 58.864 33.333 0.00 0.00 35.94 2.43
3342 3400 2.031333 GGTTGCAGAACTGAAAGCAGAG 60.031 50.000 16.75 0.00 44.04 3.35
3356 3414 5.010012 GGGAAACTATGGATTATGGTTGCAG 59.990 44.000 0.00 0.00 39.27 4.41
3512 3570 5.265191 TGCTCTGGAGACTCTAACTAACAT 58.735 41.667 1.74 0.00 0.00 2.71
3655 3747 8.770828 TGTACTGAGTGTTATTCAGCTTTTTAC 58.229 33.333 0.00 0.00 44.63 2.01
3662 3754 5.955488 TCTCTGTACTGAGTGTTATTCAGC 58.045 41.667 24.07 0.00 44.63 4.26
3663 3755 7.704472 GGATTCTCTGTACTGAGTGTTATTCAG 59.296 40.741 24.07 0.98 45.89 3.02
3664 3756 7.548097 GGATTCTCTGTACTGAGTGTTATTCA 58.452 38.462 24.07 4.91 35.68 2.57
3666 3758 6.153000 ACGGATTCTCTGTACTGAGTGTTATT 59.847 38.462 24.07 6.51 33.46 1.40
3668 3760 5.008331 ACGGATTCTCTGTACTGAGTGTTA 58.992 41.667 24.07 12.09 33.46 2.41
3669 3761 3.827302 ACGGATTCTCTGTACTGAGTGTT 59.173 43.478 24.07 13.16 33.46 3.32
3671 3763 5.562506 TTACGGATTCTCTGTACTGAGTG 57.437 43.478 24.07 14.49 37.91 3.51
3672 3764 7.940137 AGATATTACGGATTCTCTGTACTGAGT 59.060 37.037 24.07 10.34 37.91 3.41
3673 3765 8.233868 CAGATATTACGGATTCTCTGTACTGAG 58.766 40.741 20.52 20.52 37.91 3.35
3674 3766 7.175119 CCAGATATTACGGATTCTCTGTACTGA 59.825 40.741 2.21 2.21 37.91 3.41
3694 3788 6.961360 ATCTTCTTGACATACGACCAGATA 57.039 37.500 0.00 0.00 0.00 1.98
3752 3846 4.934001 TCTGAGCTGCAACTCTCATTTTAG 59.066 41.667 17.56 5.51 38.50 1.85
3817 3911 4.341806 TGCATTTCCAGTCACATTTTCAGT 59.658 37.500 0.00 0.00 0.00 3.41
3818 3912 4.682860 GTGCATTTCCAGTCACATTTTCAG 59.317 41.667 0.00 0.00 0.00 3.02
3819 3913 4.099113 TGTGCATTTCCAGTCACATTTTCA 59.901 37.500 0.00 0.00 34.87 2.69
3820 3914 4.619973 TGTGCATTTCCAGTCACATTTTC 58.380 39.130 0.00 0.00 34.87 2.29
3821 3915 4.669206 TGTGCATTTCCAGTCACATTTT 57.331 36.364 0.00 0.00 34.87 1.82
3822 3916 4.341806 TCTTGTGCATTTCCAGTCACATTT 59.658 37.500 0.00 0.00 38.94 2.32
3823 3917 3.890756 TCTTGTGCATTTCCAGTCACATT 59.109 39.130 0.00 0.00 38.94 2.71
3824 3918 3.254166 GTCTTGTGCATTTCCAGTCACAT 59.746 43.478 0.00 0.00 38.94 3.21
3825 3919 2.618241 GTCTTGTGCATTTCCAGTCACA 59.382 45.455 0.00 0.00 37.63 3.58
3826 3920 2.618241 TGTCTTGTGCATTTCCAGTCAC 59.382 45.455 0.00 0.00 0.00 3.67
3827 3921 2.929641 TGTCTTGTGCATTTCCAGTCA 58.070 42.857 0.00 0.00 0.00 3.41
3828 3922 4.510038 AATGTCTTGTGCATTTCCAGTC 57.490 40.909 0.00 0.00 33.24 3.51
3975 4069 8.934825 TGCCTTTTGCTTATAATTCAAATGAAC 58.065 29.630 17.93 13.32 42.00 3.18
4023 4117 8.329502 ACTAACTAAAATATGGAGTTCTTGGCT 58.670 33.333 1.54 0.00 35.17 4.75
4148 4242 6.300703 GCCTAGAATAGTTCAGAGTCCTCTA 58.699 44.000 0.00 0.00 35.68 2.43
4149 4243 5.137551 GCCTAGAATAGTTCAGAGTCCTCT 58.862 45.833 0.00 0.00 37.43 3.69
4155 4249 4.500035 GGTTCGGCCTAGAATAGTTCAGAG 60.500 50.000 0.00 0.00 36.82 3.35
4182 4276 3.559069 TCTTGTAACCGACCCGATCTAT 58.441 45.455 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.