Multiple sequence alignment - TraesCS4B01G340400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G340400 chr4B 100.000 4048 0 0 2344 6391 633633761 633629714 0.000000e+00 7476
1 TraesCS4B01G340400 chr4B 100.000 2151 0 0 1 2151 633636104 633633954 0.000000e+00 3973
2 TraesCS4B01G340400 chr4D 95.113 3315 130 16 3087 6391 494121758 494118466 0.000000e+00 5195
3 TraesCS4B01G340400 chr4D 92.353 680 31 11 2344 3012 494122511 494121842 0.000000e+00 948
4 TraesCS4B01G340400 chr4D 82.902 1158 76 42 1 1080 494125049 494123936 0.000000e+00 929
5 TraesCS4B01G340400 chr4D 86.521 549 29 13 1109 1624 494123946 494123410 4.330000e-156 562
6 TraesCS4B01G340400 chr4D 88.352 455 19 8 1648 2098 494123423 494122999 3.420000e-142 516
7 TraesCS4B01G340400 chr4D 79.668 241 14 16 1405 1624 494122428 494122202 2.400000e-29 141
8 TraesCS4B01G340400 chr4D 93.939 66 4 0 3028 3093 494123095 494123030 4.080000e-17 100
9 TraesCS4B01G340400 chr4D 95.652 46 2 0 3045 3090 494121844 494121799 2.470000e-09 75
10 TraesCS4B01G340400 chr5A 93.766 2695 139 18 3087 5769 673711148 673708471 0.000000e+00 4019
11 TraesCS4B01G340400 chr5A 82.319 1708 112 79 1 1624 673714341 673712740 0.000000e+00 1306
12 TraesCS4B01G340400 chr5A 92.932 764 35 12 2344 3100 673711924 673711173 0.000000e+00 1094
13 TraesCS4B01G340400 chr5A 93.750 592 28 4 5806 6391 673708476 673707888 0.000000e+00 880
14 TraesCS4B01G340400 chr5A 90.820 512 31 7 1648 2151 134468500 134469003 0.000000e+00 671
15 TraesCS4B01G340400 chr5A 86.157 484 31 19 1155 1624 134468052 134468513 2.070000e-134 490
16 TraesCS4B01G340400 chr5A 82.600 523 54 17 2426 2928 134468290 134468795 1.650000e-115 427
17 TraesCS4B01G340400 chr7A 91.211 512 29 7 1648 2151 616266908 616267411 0.000000e+00 682
18 TraesCS4B01G340400 chr7A 85.537 484 34 19 1155 1624 616266460 616266921 2.090000e-129 473
19 TraesCS4B01G340400 chr7A 83.044 519 49 22 2431 2928 616266703 616267203 9.840000e-118 435
20 TraesCS4B01G340400 chr7A 93.469 245 11 2 2344 2588 616267522 616267761 6.090000e-95 359
21 TraesCS4B01G340400 chr4A 91.016 512 30 7 1648 2151 287264997 287265500 0.000000e+00 676
22 TraesCS4B01G340400 chr4A 90.998 511 31 7 1648 2151 404452124 404451622 0.000000e+00 675
23 TraesCS4B01G340400 chr4A 90.820 512 31 7 1648 2151 480317100 480317603 0.000000e+00 671
24 TraesCS4B01G340400 chr4A 90.020 511 36 7 1648 2151 499693432 499692930 0.000000e+00 647
25 TraesCS4B01G340400 chr4A 86.902 481 30 19 1155 1624 480316655 480317113 5.720000e-140 508
26 TraesCS4B01G340400 chr4A 86.364 484 30 19 1155 1624 499693880 499693419 4.450000e-136 496
27 TraesCS4B01G340400 chr4A 86.157 484 31 20 1155 1624 404452572 404452111 2.070000e-134 490
28 TraesCS4B01G340400 chr4A 85.950 484 32 19 1155 1624 287264549 287265010 9.630000e-133 484
29 TraesCS4B01G340400 chr4A 83.044 519 49 22 2431 2928 499693637 499693137 9.840000e-118 435
30 TraesCS4B01G340400 chr4A 82.625 518 50 22 2431 2928 480316898 480317395 7.660000e-114 422
31 TraesCS4B01G340400 chr4A 82.466 519 52 22 2431 2928 404452329 404451829 9.910000e-113 418
32 TraesCS4B01G340400 chr4A 93.878 245 10 2 2344 2588 541115146 541114907 1.310000e-96 364
33 TraesCS4B01G340400 chr4A 93.469 245 11 2 2344 2588 280921329 280921568 6.090000e-95 359
34 TraesCS4B01G340400 chr4A 77.820 266 30 11 5465 5729 228102803 228102566 3.110000e-28 137
35 TraesCS4B01G340400 chr1A 90.448 513 33 7 1647 2151 467435745 467436249 0.000000e+00 662
36 TraesCS4B01G340400 chr1A 85.744 484 33 19 1155 1624 467435298 467435759 4.480000e-131 479
37 TraesCS4B01G340400 chr1A 82.852 519 50 22 2431 2928 467435541 467436041 4.580000e-116 429
38 TraesCS4B01G340400 chr1A 94.286 245 9 2 2344 2588 467436357 467436596 2.810000e-98 370
39 TraesCS4B01G340400 chr2A 90.234 512 33 8 1648 2151 198778122 198778624 0.000000e+00 652
40 TraesCS4B01G340400 chr2A 90.234 512 31 8 1648 2151 752845049 752845549 0.000000e+00 651
41 TraesCS4B01G340400 chr2A 82.812 512 49 22 2431 2921 198777917 198778410 7.660000e-114 422
42 TraesCS4B01G340400 chr2A 94.286 245 9 2 2344 2588 752845657 752845896 2.810000e-98 370
43 TraesCS4B01G340400 chr2A 93.469 245 10 2 2344 2588 198778734 198778972 6.090000e-95 359
44 TraesCS4B01G340400 chr6A 93.469 245 11 2 2344 2588 426027972 426027733 6.090000e-95 359
45 TraesCS4B01G340400 chr6B 85.714 133 7 9 5465 5595 430909455 430909333 5.200000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G340400 chr4B 633629714 633636104 6390 True 5724.500000 7476 100.000000 1 6391 2 chr4B.!!$R1 6390
1 TraesCS4B01G340400 chr4D 494118466 494125049 6583 True 1058.250000 5195 89.312500 1 6391 8 chr4D.!!$R1 6390
2 TraesCS4B01G340400 chr5A 673707888 673714341 6453 True 1824.750000 4019 90.691750 1 6391 4 chr5A.!!$R1 6390
3 TraesCS4B01G340400 chr5A 134468052 134469003 951 False 529.333333 671 86.525667 1155 2928 3 chr5A.!!$F1 1773
4 TraesCS4B01G340400 chr7A 616266460 616267761 1301 False 487.250000 682 88.315250 1155 2928 4 chr7A.!!$F1 1773
5 TraesCS4B01G340400 chr4A 287264549 287265500 951 False 580.000000 676 88.483000 1155 2151 2 chr4A.!!$F2 996
6 TraesCS4B01G340400 chr4A 480316655 480317603 948 False 533.666667 671 86.782333 1155 2928 3 chr4A.!!$F3 1773
7 TraesCS4B01G340400 chr4A 404451622 404452572 950 True 527.666667 675 86.540333 1155 2928 3 chr4A.!!$R3 1773
8 TraesCS4B01G340400 chr4A 499692930 499693880 950 True 526.000000 647 86.476000 1155 2928 3 chr4A.!!$R4 1773
9 TraesCS4B01G340400 chr1A 467435298 467436596 1298 False 485.000000 662 88.332500 1155 2928 4 chr1A.!!$F1 1773
10 TraesCS4B01G340400 chr2A 752845049 752845896 847 False 510.500000 651 92.260000 1648 2588 2 chr2A.!!$F2 940
11 TraesCS4B01G340400 chr2A 198777917 198778972 1055 False 477.666667 652 88.838333 1648 2921 3 chr2A.!!$F1 1273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.036952 AGCGAGTTCACATGGTCTGG 60.037 55.0 0.00 0.00 0.00 3.86 F
717 785 0.258484 TCTCTCTCTCTGCCCCTCTG 59.742 60.0 0.00 0.00 0.00 3.35 F
1864 2047 0.462581 AGGGTGTACGCGACGATCTA 60.463 55.0 15.93 0.00 0.00 1.98 F
1993 2176 0.107459 TGTGTGTAGGCACTTGTGCA 60.107 50.0 24.34 5.00 45.44 4.57 F
2002 2185 0.236711 GCACTTGTGCAGCACTACAG 59.763 55.0 25.83 19.58 35.11 2.74 F
2514 2969 0.672342 AGTGCTTGCTTTTCTGCAGG 59.328 50.0 15.13 0.00 44.27 4.85 F
4005 4522 0.973496 AGAGCCCCTCGTTCTTCCTC 60.973 60.0 0.00 0.00 35.36 3.71 F
4527 5044 0.250338 GGTCAAGGTGTGTGGAGACC 60.250 60.0 0.00 0.00 38.77 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1559 0.175073 ACCGGCGGCTTAAAGAGTAG 59.825 55.0 28.71 0.00 0.00 2.57 R
1985 2168 0.469917 ACCTGTAGTGCTGCACAAGT 59.530 50.0 31.90 18.49 36.74 3.16 R
3459 3976 0.723414 CAGCAGTAACATGACTGGCG 59.277 55.0 14.47 3.26 45.85 5.69 R
3907 4424 0.613777 GAAGGACCGAGGGTGACATT 59.386 55.0 0.00 0.00 35.25 2.71 R
3982 4499 1.186267 AAGAACGAGGGGCTCTTCGT 61.186 55.0 19.16 19.16 40.76 3.85 R
4320 4837 0.250467 CAGGGCTTGCAGTGTACACT 60.250 55.0 22.95 22.95 43.61 3.55 R
4919 5439 0.881796 GCACCACCTTGCCTTCTTAC 59.118 55.0 0.00 0.00 36.42 2.34 R
6175 6714 0.535553 GGTGGTTACCGGAACAAGCA 60.536 55.0 9.46 12.14 39.03 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.036952 AGCGAGTTCACATGGTCTGG 60.037 55.000 0.00 0.00 0.00 3.86
118 122 3.373565 GCCCCGGCAAAAGTCCTG 61.374 66.667 0.00 0.00 41.49 3.86
120 124 2.282462 CCCGGCAAAAGTCCTGCT 60.282 61.111 0.00 0.00 39.82 4.24
121 125 2.629656 CCCGGCAAAAGTCCTGCTG 61.630 63.158 0.00 0.00 44.34 4.41
225 238 1.745489 CTTCCTCCCCTTTTCGCCG 60.745 63.158 0.00 0.00 0.00 6.46
241 254 3.798511 CGAGCCTTTCCCCCTCCC 61.799 72.222 0.00 0.00 0.00 4.30
277 294 2.266554 GCACTAGTAACTGCTCTGCTG 58.733 52.381 0.00 0.00 0.00 4.41
287 316 2.103771 ACTGCTCTGCTGTTCTTGAAGA 59.896 45.455 0.00 0.00 37.43 2.87
346 376 1.899437 TAAGCCCTGCTCCGGAACTG 61.899 60.000 5.23 5.00 38.25 3.16
356 386 1.674322 CCGGAACTGCGGTTTCCAT 60.674 57.895 13.23 0.00 35.58 3.41
358 388 1.794222 GGAACTGCGGTTTCCATCG 59.206 57.895 13.23 0.00 35.58 3.84
359 389 1.644786 GGAACTGCGGTTTCCATCGG 61.645 60.000 13.23 0.00 35.58 4.18
360 390 2.253414 GAACTGCGGTTTCCATCGGC 62.253 60.000 13.23 0.00 35.58 5.54
361 391 3.864686 CTGCGGTTTCCATCGGCG 61.865 66.667 0.00 0.00 34.63 6.46
405 435 2.990479 GGGTCACAATCCTCGCCT 59.010 61.111 0.00 0.00 0.00 5.52
406 436 1.153349 GGGTCACAATCCTCGCCTC 60.153 63.158 0.00 0.00 0.00 4.70
407 437 1.519455 GGTCACAATCCTCGCCTCG 60.519 63.158 0.00 0.00 0.00 4.63
408 438 2.167861 GTCACAATCCTCGCCTCGC 61.168 63.158 0.00 0.00 0.00 5.03
409 439 2.892425 CACAATCCTCGCCTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
410 440 3.077556 ACAATCCTCGCCTCGCCT 61.078 61.111 0.00 0.00 0.00 5.52
411 441 2.279784 CAATCCTCGCCTCGCCTC 60.280 66.667 0.00 0.00 0.00 4.70
412 442 3.905678 AATCCTCGCCTCGCCTCG 61.906 66.667 0.00 0.00 0.00 4.63
433 477 4.899239 GCCCATCCTCTCGCCACG 62.899 72.222 0.00 0.00 0.00 4.94
487 537 4.423209 AGGGGACAGCCCTCTCCC 62.423 72.222 0.34 0.34 44.44 4.30
523 573 2.046604 CCCTCCCCGTTCGGAAAC 60.047 66.667 13.08 0.00 0.00 2.78
541 591 1.146263 CCCTACCACCGATTGCTCC 59.854 63.158 0.00 0.00 0.00 4.70
573 623 3.161450 CCGTCCCCATCCGTCCAT 61.161 66.667 0.00 0.00 0.00 3.41
576 626 2.842462 TCCCCATCCGTCCATCCG 60.842 66.667 0.00 0.00 0.00 4.18
616 666 1.134788 TCCCGATTTCTCTTTCGAGGC 60.135 52.381 0.00 0.00 37.55 4.70
621 671 2.798148 TTTCTCTTTCGAGGCCCGGC 62.798 60.000 12.77 0.00 37.86 6.13
666 716 2.037367 TCCACAGGGTAGCGAGCT 59.963 61.111 2.25 2.25 34.93 4.09
668 718 2.185350 CACAGGGTAGCGAGCTGG 59.815 66.667 7.99 0.00 0.00 4.85
687 737 2.564975 CTTCTTGCGCCTTGGCTG 59.435 61.111 4.18 4.79 0.00 4.85
695 763 1.986575 GCGCCTTGGCTGTGATTCTC 61.987 60.000 10.12 0.00 0.00 2.87
699 767 2.903798 CCTTGGCTGTGATTCTCTCTC 58.096 52.381 0.00 0.00 0.00 3.20
700 768 2.500910 CCTTGGCTGTGATTCTCTCTCT 59.499 50.000 0.00 0.00 0.00 3.10
701 769 3.430651 CCTTGGCTGTGATTCTCTCTCTC 60.431 52.174 0.00 0.00 0.00 3.20
702 770 3.098774 TGGCTGTGATTCTCTCTCTCT 57.901 47.619 0.00 0.00 0.00 3.10
703 771 3.023119 TGGCTGTGATTCTCTCTCTCTC 58.977 50.000 0.00 0.00 0.00 3.20
704 772 3.290710 GGCTGTGATTCTCTCTCTCTCT 58.709 50.000 0.00 0.00 0.00 3.10
705 773 3.316308 GGCTGTGATTCTCTCTCTCTCTC 59.684 52.174 0.00 0.00 0.00 3.20
706 774 4.202441 GCTGTGATTCTCTCTCTCTCTCT 58.798 47.826 0.00 0.00 0.00 3.10
707 775 4.274459 GCTGTGATTCTCTCTCTCTCTCTC 59.726 50.000 0.00 0.00 0.00 3.20
708 776 5.678583 CTGTGATTCTCTCTCTCTCTCTCT 58.321 45.833 0.00 0.00 0.00 3.10
717 785 0.258484 TCTCTCTCTCTGCCCCTCTG 59.742 60.000 0.00 0.00 0.00 3.35
761 829 1.133262 CCGGGTCCTCCTCACCTAATA 60.133 57.143 0.00 0.00 33.96 0.98
815 895 3.247056 TTGCCGGTCCAAGCGATCA 62.247 57.895 1.90 0.00 42.41 2.92
816 896 2.892425 GCCGGTCCAAGCGATCAG 60.892 66.667 1.90 0.00 42.41 2.90
848 937 1.546961 CCTCCCTACCTACATAGCCG 58.453 60.000 0.00 0.00 0.00 5.52
849 938 1.203025 CCTCCCTACCTACATAGCCGT 60.203 57.143 0.00 0.00 0.00 5.68
850 939 1.887198 CTCCCTACCTACATAGCCGTG 59.113 57.143 0.00 0.00 0.00 4.94
865 962 2.430921 GTGTCCACGCACTCCTCG 60.431 66.667 0.00 0.00 36.51 4.63
866 963 4.357947 TGTCCACGCACTCCTCGC 62.358 66.667 0.00 0.00 0.00 5.03
867 964 4.057428 GTCCACGCACTCCTCGCT 62.057 66.667 0.00 0.00 0.00 4.93
870 967 2.202544 CACGCACTCCTCGCTCTC 60.203 66.667 0.00 0.00 0.00 3.20
871 968 3.444805 ACGCACTCCTCGCTCTCC 61.445 66.667 0.00 0.00 0.00 3.71
872 969 3.443925 CGCACTCCTCGCTCTCCA 61.444 66.667 0.00 0.00 0.00 3.86
873 970 2.493973 GCACTCCTCGCTCTCCAG 59.506 66.667 0.00 0.00 0.00 3.86
874 971 3.074999 GCACTCCTCGCTCTCCAGG 62.075 68.421 0.00 0.00 0.00 4.45
905 1009 3.574396 CCACTTCAGACTTCAGACCAGTA 59.426 47.826 0.00 0.00 0.00 2.74
916 1020 3.767711 TCAGACCAGTACATCTCACTGT 58.232 45.455 0.00 0.00 41.52 3.55
926 1030 3.744660 ACATCTCACTGTTCTTTCCCAC 58.255 45.455 0.00 0.00 0.00 4.61
955 1059 2.280797 TCCGTGTGCTGGTTGCTC 60.281 61.111 0.00 0.00 43.37 4.26
1017 1147 1.879884 GATGCTGCGTGCTGATCGA 60.880 57.895 0.00 0.00 43.37 3.59
1070 1201 6.726258 TTCTGATGCATGTTACTACAGTTG 57.274 37.500 2.46 0.00 37.77 3.16
1085 1224 6.066690 ACTACAGTTGTACTACTCCTTGTGA 58.933 40.000 7.02 0.00 0.00 3.58
1096 1235 2.487934 CTCCTTGTGAGTTGTGACCAG 58.512 52.381 0.00 0.00 36.27 4.00
1097 1236 2.103094 CTCCTTGTGAGTTGTGACCAGA 59.897 50.000 0.00 0.00 36.27 3.86
1098 1237 2.705658 TCCTTGTGAGTTGTGACCAGAT 59.294 45.455 0.00 0.00 0.00 2.90
1099 1238 2.810274 CCTTGTGAGTTGTGACCAGATG 59.190 50.000 0.00 0.00 0.00 2.90
1101 1240 3.836365 TGTGAGTTGTGACCAGATGAA 57.164 42.857 0.00 0.00 0.00 2.57
1102 1241 4.356405 TGTGAGTTGTGACCAGATGAAT 57.644 40.909 0.00 0.00 0.00 2.57
1103 1242 4.067192 TGTGAGTTGTGACCAGATGAATG 58.933 43.478 0.00 0.00 0.00 2.67
1104 1243 3.438087 GTGAGTTGTGACCAGATGAATGG 59.562 47.826 0.00 0.00 46.47 3.16
1114 1253 3.470709 CCAGATGAATGGTTATCTGCGT 58.529 45.455 8.35 0.00 45.60 5.24
1133 1272 7.526608 TCTGCGTCTCCAGTAAAATTATTTTG 58.473 34.615 12.62 0.00 34.19 2.44
1163 1302 9.985318 CTTTTCAGCTTTCATATAGACTTTGAG 57.015 33.333 0.00 0.00 0.00 3.02
1189 1328 7.934855 ATGAGCATGTGTTCTCTTATTCTTT 57.065 32.000 0.00 0.00 0.00 2.52
1231 1388 1.469335 ATTTGGTTGCTGCTGCTGCT 61.469 50.000 27.67 7.14 40.48 4.24
1232 1389 2.358193 TTTGGTTGCTGCTGCTGCTG 62.358 55.000 27.67 16.73 40.48 4.41
1384 1545 2.256461 GTCAAAAGGCAGCCGCAG 59.744 61.111 5.55 0.00 41.24 5.18
1424 1587 0.742990 TTAAGCCGCCGGTGATGAAG 60.743 55.000 18.79 0.00 0.00 3.02
1425 1588 1.609635 TAAGCCGCCGGTGATGAAGA 61.610 55.000 18.79 0.00 0.00 2.87
1426 1589 2.435938 GCCGCCGGTGATGAAGAA 60.436 61.111 18.79 0.00 0.00 2.52
1436 1599 5.737063 GCCGGTGATGAAGAATGCAATTAAT 60.737 40.000 1.90 0.00 36.07 1.40
1437 1600 5.916883 CCGGTGATGAAGAATGCAATTAATC 59.083 40.000 0.00 0.00 36.07 1.75
1447 1610 9.513727 GAAGAATGCAATTAATCTCTTCCTTTC 57.486 33.333 0.00 0.00 36.07 2.62
1455 1618 7.709149 ATTAATCTCTTCCTTTCTTGGTTGG 57.291 36.000 0.00 0.00 0.00 3.77
1475 1639 4.303794 TGGCCATTATTCCCTACTAGTGT 58.696 43.478 0.00 0.00 0.00 3.55
1491 1655 1.202452 AGTGTTTGCTTTTCTGCAGGC 60.202 47.619 15.13 9.90 44.27 4.85
1492 1656 1.113788 TGTTTGCTTTTCTGCAGGCT 58.886 45.000 15.13 0.00 44.27 4.58
1583 1757 7.951347 ATTGCAGAGGATAAGAATTTGTTCT 57.049 32.000 0.00 0.00 0.00 3.01
1584 1758 9.466497 AATTGCAGAGGATAAGAATTTGTTCTA 57.534 29.630 0.00 0.00 0.00 2.10
1585 1759 8.862325 TTGCAGAGGATAAGAATTTGTTCTAA 57.138 30.769 0.00 0.00 0.00 2.10
1586 1760 8.268850 TGCAGAGGATAAGAATTTGTTCTAAC 57.731 34.615 0.00 0.00 0.00 2.34
1587 1761 7.336931 TGCAGAGGATAAGAATTTGTTCTAACC 59.663 37.037 0.00 0.00 0.00 2.85
1588 1762 7.336931 GCAGAGGATAAGAATTTGTTCTAACCA 59.663 37.037 0.00 0.00 0.00 3.67
1603 1781 6.204688 TGTTCTAACCATACTGTTCTTGCTTG 59.795 38.462 0.00 0.00 0.00 4.01
1604 1782 5.865085 TCTAACCATACTGTTCTTGCTTGT 58.135 37.500 0.00 0.00 0.00 3.16
1607 1785 4.968259 ACCATACTGTTCTTGCTTGTACA 58.032 39.130 0.00 0.00 0.00 2.90
1608 1786 5.560724 ACCATACTGTTCTTGCTTGTACAT 58.439 37.500 0.00 0.00 0.00 2.29
1609 1787 5.643777 ACCATACTGTTCTTGCTTGTACATC 59.356 40.000 0.00 0.00 0.00 3.06
1610 1788 5.643348 CCATACTGTTCTTGCTTGTACATCA 59.357 40.000 0.00 0.00 0.00 3.07
1611 1789 6.149308 CCATACTGTTCTTGCTTGTACATCAA 59.851 38.462 0.00 3.70 34.61 2.57
1612 1790 7.148188 CCATACTGTTCTTGCTTGTACATCAAT 60.148 37.037 10.33 0.57 35.35 2.57
1613 1791 6.246420 ACTGTTCTTGCTTGTACATCAATC 57.754 37.500 10.33 6.52 35.35 2.67
1614 1792 6.000219 ACTGTTCTTGCTTGTACATCAATCT 59.000 36.000 10.33 0.00 35.35 2.40
1615 1793 6.148480 ACTGTTCTTGCTTGTACATCAATCTC 59.852 38.462 10.33 6.03 35.35 2.75
1616 1794 6.233434 TGTTCTTGCTTGTACATCAATCTCT 58.767 36.000 10.33 0.00 35.35 3.10
1617 1795 6.148315 TGTTCTTGCTTGTACATCAATCTCTG 59.852 38.462 10.33 1.76 35.35 3.35
1618 1796 4.633126 TCTTGCTTGTACATCAATCTCTGC 59.367 41.667 10.33 0.00 35.35 4.26
1619 1797 4.212143 TGCTTGTACATCAATCTCTGCT 57.788 40.909 0.00 0.00 35.35 4.24
1620 1798 4.582869 TGCTTGTACATCAATCTCTGCTT 58.417 39.130 0.00 0.00 35.35 3.91
1621 1799 4.633126 TGCTTGTACATCAATCTCTGCTTC 59.367 41.667 0.00 0.00 35.35 3.86
1622 1800 4.633126 GCTTGTACATCAATCTCTGCTTCA 59.367 41.667 0.00 0.00 35.35 3.02
1623 1801 5.122869 GCTTGTACATCAATCTCTGCTTCAA 59.877 40.000 0.00 0.00 35.35 2.69
1624 1802 6.348786 GCTTGTACATCAATCTCTGCTTCAAA 60.349 38.462 0.00 0.00 35.35 2.69
1625 1803 7.509141 TTGTACATCAATCTCTGCTTCAAAA 57.491 32.000 0.00 0.00 0.00 2.44
1626 1804 7.509141 TGTACATCAATCTCTGCTTCAAAAA 57.491 32.000 0.00 0.00 0.00 1.94
1688 1869 7.934665 TGTTGCATTTACTTTCCTACAGTCTTA 59.065 33.333 0.00 0.00 0.00 2.10
1689 1870 7.900782 TGCATTTACTTTCCTACAGTCTTAC 57.099 36.000 0.00 0.00 0.00 2.34
1717 1898 1.531423 CTTCAGTGGCAGTGCATTCT 58.469 50.000 18.61 8.70 0.00 2.40
1718 1899 2.703416 CTTCAGTGGCAGTGCATTCTA 58.297 47.619 18.61 0.00 0.00 2.10
1719 1900 2.857186 TCAGTGGCAGTGCATTCTAA 57.143 45.000 18.61 0.00 0.00 2.10
1720 1901 2.426522 TCAGTGGCAGTGCATTCTAAC 58.573 47.619 18.61 4.95 0.00 2.34
1721 1902 2.038952 TCAGTGGCAGTGCATTCTAACT 59.961 45.455 18.61 7.16 0.00 2.24
1722 1903 2.816087 CAGTGGCAGTGCATTCTAACTT 59.184 45.455 18.61 0.00 0.00 2.66
1723 1904 3.254166 CAGTGGCAGTGCATTCTAACTTT 59.746 43.478 18.61 0.00 0.00 2.66
1835 2018 6.519382 TCAGGATTCAGATAGCACTATTGTG 58.481 40.000 2.65 2.65 46.37 3.33
1864 2047 0.462581 AGGGTGTACGCGACGATCTA 60.463 55.000 15.93 0.00 0.00 1.98
1866 2049 1.002033 GGGTGTACGCGACGATCTAAT 60.002 52.381 15.93 0.00 0.00 1.73
1873 2056 1.692296 GCGACGATCTAATGGAGAGC 58.308 55.000 0.00 0.00 37.70 4.09
1902 2085 3.410960 TTTTTGCCCAATTGGTGCC 57.589 47.368 25.76 14.78 36.04 5.01
1983 2166 1.202758 TCTGGGCAGTTTGTGTGTAGG 60.203 52.381 0.00 0.00 0.00 3.18
1984 2167 0.821711 TGGGCAGTTTGTGTGTAGGC 60.822 55.000 0.00 0.00 0.00 3.93
1985 2168 0.821711 GGGCAGTTTGTGTGTAGGCA 60.822 55.000 0.00 0.00 0.00 4.75
1986 2169 0.310854 GGCAGTTTGTGTGTAGGCAC 59.689 55.000 0.00 0.00 45.44 5.01
1987 2170 1.308998 GCAGTTTGTGTGTAGGCACT 58.691 50.000 0.00 0.00 45.44 4.40
1988 2171 1.676006 GCAGTTTGTGTGTAGGCACTT 59.324 47.619 0.00 0.00 45.44 3.16
1989 2172 2.541588 GCAGTTTGTGTGTAGGCACTTG 60.542 50.000 0.00 0.00 45.44 3.16
1990 2173 2.682856 CAGTTTGTGTGTAGGCACTTGT 59.317 45.455 0.00 0.00 45.44 3.16
1991 2174 2.682856 AGTTTGTGTGTAGGCACTTGTG 59.317 45.455 0.00 0.00 45.44 3.33
1992 2175 1.021202 TTGTGTGTAGGCACTTGTGC 58.979 50.000 16.50 16.50 45.44 4.57
1993 2176 0.107459 TGTGTGTAGGCACTTGTGCA 60.107 50.000 24.34 5.00 45.44 4.57
1994 2177 0.588252 GTGTGTAGGCACTTGTGCAG 59.412 55.000 24.34 0.00 45.44 4.41
1995 2178 1.165907 TGTGTAGGCACTTGTGCAGC 61.166 55.000 24.34 14.67 45.44 5.25
1996 2179 1.148048 TGTAGGCACTTGTGCAGCA 59.852 52.632 24.34 16.68 41.75 4.41
1997 2180 1.165907 TGTAGGCACTTGTGCAGCAC 61.166 55.000 24.34 19.37 41.75 4.40
1998 2181 0.886490 GTAGGCACTTGTGCAGCACT 60.886 55.000 25.83 15.28 41.75 4.40
1999 2182 0.684535 TAGGCACTTGTGCAGCACTA 59.315 50.000 25.83 17.79 41.75 2.74
2000 2183 0.886490 AGGCACTTGTGCAGCACTAC 60.886 55.000 25.83 10.53 35.11 2.73
2001 2184 1.165907 GGCACTTGTGCAGCACTACA 61.166 55.000 25.83 9.48 35.11 2.74
2002 2185 0.236711 GCACTTGTGCAGCACTACAG 59.763 55.000 25.83 19.58 35.11 2.74
2025 2228 4.930405 GGTACAGGTTTCTTCAGTAGCTTC 59.070 45.833 0.00 0.00 32.24 3.86
2064 2267 5.988561 GTGTTTCATAGAAAATGGCCAACAA 59.011 36.000 10.96 0.00 0.00 2.83
2065 2268 6.650390 GTGTTTCATAGAAAATGGCCAACAAT 59.350 34.615 10.96 0.00 0.00 2.71
2080 2286 5.665916 CCAACAATTGGCCTTATCTCTTT 57.334 39.130 10.83 0.00 45.17 2.52
2387 2842 3.310774 CAGTATTTTCTGATCCAGCACCG 59.689 47.826 0.00 0.00 37.61 4.94
2416 2871 3.366719 GAAACTGAAACTGCTTCACTGC 58.633 45.455 0.00 0.00 39.20 4.40
2433 2888 7.594015 GCTTCACTGCCATCTTATCAATATTTG 59.406 37.037 0.00 0.00 0.00 2.32
2440 2895 5.413833 CCATCTTATCAATATTTGAGCCGCT 59.586 40.000 0.00 0.00 43.98 5.52
2495 2950 4.048600 TGGTTGGCCATTATTCCCTACTA 58.951 43.478 6.09 0.00 40.46 1.82
2514 2969 0.672342 AGTGCTTGCTTTTCTGCAGG 59.328 50.000 15.13 0.00 44.27 4.85
2557 3012 8.107095 AGTTTTCATGCCTAACTAAGAACCATA 58.893 33.333 5.48 0.00 30.75 2.74
2561 3016 8.506168 TCATGCCTAACTAAGAACCATAAAAG 57.494 34.615 0.00 0.00 0.00 2.27
2641 3098 3.637998 ATTGCTCTGTTCTTGCTTGTG 57.362 42.857 0.00 0.00 0.00 3.33
2676 3133 6.147864 TCTTCAAGTGCTGCATTTACTTTT 57.852 33.333 10.15 0.00 32.69 2.27
2783 3246 4.692625 GCATGTTCTCTTGCTTCTACTGAA 59.307 41.667 0.00 0.00 40.22 3.02
2808 3271 6.639632 TGAAAGGAAGGACTTCAGAATTTG 57.360 37.500 13.51 0.00 41.20 2.32
2812 3275 6.642733 AGGAAGGACTTCAGAATTTGGATA 57.357 37.500 13.51 0.00 41.20 2.59
2842 3305 1.607148 TCATGGATAGAGTGTACGCGG 59.393 52.381 12.47 0.00 0.00 6.46
2893 3357 1.973281 CCAATTGGTGCCGCTGAGT 60.973 57.895 16.90 0.00 0.00 3.41
2924 3391 3.636764 GGGGAATTTATAACCCTGTGCTG 59.363 47.826 9.01 0.00 42.86 4.41
2927 3394 4.947388 GGAATTTATAACCCTGTGCTGTGA 59.053 41.667 0.00 0.00 0.00 3.58
2928 3395 5.417580 GGAATTTATAACCCTGTGCTGTGAA 59.582 40.000 0.00 0.00 0.00 3.18
2998 3465 6.183360 GGTTCATCATAATGATTTCTGGGCAA 60.183 38.462 0.00 0.00 41.49 4.52
3019 3489 5.451908 CAATTTGTGTGTAAGCACTACAGG 58.548 41.667 0.00 0.00 45.44 4.00
3020 3490 3.830744 TTGTGTGTAAGCACTACAGGT 57.169 42.857 0.00 0.00 45.44 4.00
3021 3491 4.940905 TTGTGTGTAAGCACTACAGGTA 57.059 40.909 0.00 0.00 45.44 3.08
3022 3492 4.247267 TGTGTGTAAGCACTACAGGTAC 57.753 45.455 0.00 0.00 45.44 3.34
3023 3493 3.637694 TGTGTGTAAGCACTACAGGTACA 59.362 43.478 0.00 3.74 45.44 2.90
3024 3494 4.235360 GTGTGTAAGCACTACAGGTACAG 58.765 47.826 0.00 0.00 45.44 2.74
3025 3495 3.251571 GTGTAAGCACTACAGGTACAGC 58.748 50.000 0.00 0.00 41.28 4.40
3026 3496 2.232941 TGTAAGCACTACAGGTACAGCC 59.767 50.000 0.00 0.00 35.50 4.85
3052 3522 5.491982 ACAGGTTTCTTCAGTAGCCTTATG 58.508 41.667 0.00 0.00 0.00 1.90
3106 3620 1.270414 ACATGGACCTCTCCTGGCAG 61.270 60.000 7.75 7.75 37.48 4.85
3110 3624 3.678951 GACCTCTCCTGGCAGCTGC 62.679 68.421 30.88 30.88 41.14 5.25
3200 3715 2.718663 TGATCTTGCGCGCAAAATATG 58.281 42.857 41.53 30.58 35.33 1.78
3379 3895 2.349886 GGAAACTGCTTAGCTGTCATCG 59.650 50.000 16.62 0.00 39.66 3.84
3404 3920 5.018809 AGACAACATAGGCATGATTTTGGT 58.981 37.500 0.00 0.00 35.96 3.67
3427 3943 8.483758 TGGTAGTTCTTAATTTCCTGTCTATCC 58.516 37.037 0.00 0.00 0.00 2.59
3459 3976 6.385649 TGGGTTTTCTGTCATCTTTAACAC 57.614 37.500 0.00 0.00 0.00 3.32
3466 3983 3.064207 TGTCATCTTTAACACGCCAGTC 58.936 45.455 0.00 0.00 0.00 3.51
3533 4050 5.617252 TCACTAGATTTTTGGTTCTTCGGT 58.383 37.500 0.00 0.00 0.00 4.69
3546 4063 1.902508 TCTTCGGTGAAGATGGAGCTT 59.097 47.619 5.19 0.00 42.78 3.74
3795 4312 3.112709 GACTTGTGCCCGACGCTC 61.113 66.667 0.00 0.00 38.78 5.03
3996 4513 4.194720 CCGACGAAGAGCCCCTCG 62.195 72.222 0.00 0.00 35.36 4.63
4005 4522 0.973496 AGAGCCCCTCGTTCTTCCTC 60.973 60.000 0.00 0.00 35.36 3.71
4041 4558 1.004394 AGGAAAACCCGGTCAAGATCC 59.996 52.381 0.00 0.09 40.87 3.36
4134 4651 3.664495 TCGCCGTCGAAGAGAAGT 58.336 55.556 0.00 0.00 42.44 3.01
4269 4786 1.076192 AGGCCTTCTGCAGTGCATT 59.924 52.632 20.10 5.08 43.89 3.56
4303 4820 3.397482 CTCCCTCACTTTGAACTGTCAG 58.603 50.000 0.00 0.00 34.49 3.51
4320 4837 2.092968 GTCAGTGGACAATCCTATGGCA 60.093 50.000 0.00 0.00 43.73 4.92
4321 4838 2.171237 TCAGTGGACAATCCTATGGCAG 59.829 50.000 0.00 0.00 37.46 4.85
4447 4964 1.112113 GATGGGGAACTACTCGAGCA 58.888 55.000 13.61 0.00 0.00 4.26
4494 5011 0.972883 AGGTGACAAGCTCTCTGGTC 59.027 55.000 0.00 0.00 42.45 4.02
4527 5044 0.250338 GGTCAAGGTGTGTGGAGACC 60.250 60.000 0.00 0.00 38.77 3.85
4589 5106 1.892819 ATGCAGAGCGCCTACAGTGT 61.893 55.000 2.29 0.00 41.33 3.55
4596 5113 0.385974 GCGCCTACAGTGTTGCAAAG 60.386 55.000 0.00 0.00 0.00 2.77
4659 5176 1.000521 CAATGCTTCCTCCAGCCCA 60.001 57.895 0.00 0.00 39.25 5.36
4735 5252 1.425031 GATGTGCGCGAAATGCTCA 59.575 52.632 12.10 0.00 43.27 4.26
4737 5254 0.452987 ATGTGCGCGAAATGCTCAAT 59.547 45.000 12.10 0.00 40.58 2.57
4801 5318 4.193334 CCGCTGACGATCTGCCGA 62.193 66.667 0.00 0.00 43.93 5.54
4915 5432 2.420890 GAGCCGCTCATCCAGAGG 59.579 66.667 15.78 0.00 44.86 3.69
4916 5433 2.042537 AGCCGCTCATCCAGAGGA 60.043 61.111 0.00 0.00 44.93 3.71
4919 5439 2.040330 CCGCTCATCCAGAGGAGAG 58.960 63.158 13.20 9.54 44.93 3.20
4953 5473 3.719699 GTGCATAAGCGCCATTGTT 57.280 47.368 2.29 0.00 45.39 2.83
5026 5546 3.754530 TCGAGCGATGGCGGAACA 61.755 61.111 0.00 0.00 46.35 3.18
5191 5711 8.697507 ACAGGATTTTATGTTTCAGAAGAAGT 57.302 30.769 0.00 0.00 34.71 3.01
5196 5716 6.707440 TTTATGTTTCAGAAGAAGTGGCAA 57.293 33.333 0.00 0.00 34.71 4.52
5300 5820 2.772515 GGGCCTGTACATCCTCTACTTT 59.227 50.000 0.84 0.00 0.00 2.66
5395 5915 0.248866 CACCCAAAACTGTGAACCGC 60.249 55.000 0.00 0.00 0.00 5.68
5459 5979 7.901029 TGTTGACTTTATCTTGAGAGAGATGT 58.099 34.615 0.00 0.00 37.01 3.06
5460 5980 7.816513 TGTTGACTTTATCTTGAGAGAGATGTG 59.183 37.037 0.00 0.00 37.01 3.21
5461 5981 7.473735 TGACTTTATCTTGAGAGAGATGTGT 57.526 36.000 0.00 0.00 37.01 3.72
5462 5982 8.581253 TGACTTTATCTTGAGAGAGATGTGTA 57.419 34.615 0.00 0.00 37.01 2.90
5463 5983 9.025041 TGACTTTATCTTGAGAGAGATGTGTAA 57.975 33.333 0.00 0.00 37.01 2.41
5464 5984 9.862371 GACTTTATCTTGAGAGAGATGTGTAAA 57.138 33.333 0.00 0.00 37.01 2.01
5468 5988 9.809096 TTATCTTGAGAGAGATGTGTAAATGTC 57.191 33.333 0.00 0.00 37.01 3.06
5469 5989 6.634805 TCTTGAGAGAGATGTGTAAATGTCC 58.365 40.000 0.00 0.00 0.00 4.02
5517 6041 4.262164 GCTTTTCTGGATGAAGGCTGAAAA 60.262 41.667 6.52 6.52 35.89 2.29
5543 6067 6.071334 CCTGAAACTGTAGTAGGAATCACAGA 60.071 42.308 7.52 0.00 40.67 3.41
5666 6191 1.698532 TGGGCCATTGTGCTGATTTTT 59.301 42.857 0.00 0.00 0.00 1.94
5690 6215 1.872952 TGCAGTTTTCACCACGATGAG 59.127 47.619 0.00 0.00 0.00 2.90
5707 6232 4.210746 CGATGAGATTCACATTAGCCACTG 59.789 45.833 0.00 0.00 0.00 3.66
5716 6241 1.400846 CATTAGCCACTGAAGCTGCTG 59.599 52.381 1.35 0.27 41.71 4.41
5717 6242 0.397941 TTAGCCACTGAAGCTGCTGT 59.602 50.000 1.35 0.00 41.71 4.40
5718 6243 0.397941 TAGCCACTGAAGCTGCTGTT 59.602 50.000 1.35 0.00 41.71 3.16
5719 6244 1.170919 AGCCACTGAAGCTGCTGTTG 61.171 55.000 1.35 0.00 39.69 3.33
5720 6245 1.168407 GCCACTGAAGCTGCTGTTGA 61.168 55.000 1.35 0.00 0.00 3.18
5721 6246 1.531423 CCACTGAAGCTGCTGTTGAT 58.469 50.000 1.35 0.00 0.00 2.57
5722 6247 1.884579 CCACTGAAGCTGCTGTTGATT 59.115 47.619 1.35 0.00 0.00 2.57
5723 6248 2.295349 CCACTGAAGCTGCTGTTGATTT 59.705 45.455 1.35 0.00 0.00 2.17
5724 6249 3.503363 CCACTGAAGCTGCTGTTGATTTA 59.497 43.478 1.35 0.00 0.00 1.40
5725 6250 4.157289 CCACTGAAGCTGCTGTTGATTTAT 59.843 41.667 1.35 0.00 0.00 1.40
5726 6251 5.330295 CACTGAAGCTGCTGTTGATTTATC 58.670 41.667 1.35 0.00 0.00 1.75
5727 6252 5.005740 ACTGAAGCTGCTGTTGATTTATCA 58.994 37.500 1.35 0.00 34.44 2.15
5752 6289 8.869897 CAGCTACTCGAAACTAAAATCATGTAA 58.130 33.333 0.00 0.00 0.00 2.41
5787 6324 2.104331 ATACGGCGGCGACTTCTG 59.896 61.111 38.93 7.38 0.00 3.02
5856 6394 3.383620 TTATGGTGGCTGCAAAACTTG 57.616 42.857 0.50 0.00 0.00 3.16
5949 6487 1.002684 CGAGTAACCGCTATCTCGCTT 60.003 52.381 0.00 0.00 41.98 4.68
5956 6494 1.212616 CGCTATCTCGCTTGAAAGGG 58.787 55.000 0.88 0.88 40.04 3.95
6175 6714 1.251527 ACGATTCGTGCCTGTCCTCT 61.252 55.000 11.56 0.00 39.18 3.69
6231 6776 0.613260 TACAGGCCGAGCAGATTTGT 59.387 50.000 0.00 0.00 0.00 2.83
6286 6831 2.834618 GCCGCCAATCCAATCGGTC 61.835 63.158 0.00 0.00 43.45 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.387878 CGCAGTCAGAGTCAGACCAC 60.388 60.000 11.71 4.14 36.68 4.16
225 238 2.286502 AGGGAGGGGGAAAGGCTC 60.287 66.667 0.00 0.00 0.00 4.70
241 254 4.527583 GCCTGCCTGCGGAGAGAG 62.528 72.222 5.10 0.00 0.00 3.20
271 288 1.696336 AGGCTCTTCAAGAACAGCAGA 59.304 47.619 11.28 0.00 34.59 4.26
277 294 6.439599 GTTTTAAGGAAGGCTCTTCAAGAAC 58.560 40.000 14.39 8.45 0.00 3.01
287 316 1.004394 CCTCCGGTTTTAAGGAAGGCT 59.996 52.381 0.00 0.00 35.90 4.58
318 347 3.219198 CAGGGCTTAATGGCGGCC 61.219 66.667 13.32 13.32 45.46 6.13
361 391 3.056328 GAGCGGGTGGAAACTGCC 61.056 66.667 0.00 0.00 41.10 4.85
362 392 3.423154 CGAGCGGGTGGAAACTGC 61.423 66.667 0.00 0.00 40.50 4.40
363 393 3.423154 GCGAGCGGGTGGAAACTG 61.423 66.667 0.00 0.00 0.00 3.16
364 394 4.699522 GGCGAGCGGGTGGAAACT 62.700 66.667 0.00 0.00 0.00 2.66
415 445 4.899239 GTGGCGAGAGGATGGGCG 62.899 72.222 0.00 0.00 34.67 6.13
416 446 4.899239 CGTGGCGAGAGGATGGGC 62.899 72.222 0.00 0.00 0.00 5.36
417 447 4.227134 CCGTGGCGAGAGGATGGG 62.227 72.222 0.00 0.00 0.00 4.00
418 448 2.635229 CTTCCGTGGCGAGAGGATGG 62.635 65.000 0.00 0.00 33.57 3.51
419 449 1.227089 CTTCCGTGGCGAGAGGATG 60.227 63.158 0.00 0.00 33.57 3.51
420 450 0.970937 TTCTTCCGTGGCGAGAGGAT 60.971 55.000 0.00 0.00 33.57 3.24
421 451 1.595993 CTTCTTCCGTGGCGAGAGGA 61.596 60.000 0.00 0.00 0.00 3.71
422 452 1.153745 CTTCTTCCGTGGCGAGAGG 60.154 63.158 0.00 0.00 0.00 3.69
423 453 0.243907 TTCTTCTTCCGTGGCGAGAG 59.756 55.000 0.00 0.00 0.00 3.20
424 454 0.677288 TTTCTTCTTCCGTGGCGAGA 59.323 50.000 0.00 0.00 0.00 4.04
425 455 1.071605 CTTTCTTCTTCCGTGGCGAG 58.928 55.000 0.00 0.00 0.00 5.03
433 477 4.559862 TCCCTGTCATCTTTCTTCTTCC 57.440 45.455 0.00 0.00 0.00 3.46
487 537 3.465403 CTGAGGGGGAGGCGTCAG 61.465 72.222 8.91 0.00 0.00 3.51
520 570 0.696501 AGCAATCGGTGGTAGGGTTT 59.303 50.000 0.00 0.00 35.75 3.27
523 573 1.146263 GGAGCAATCGGTGGTAGGG 59.854 63.158 0.00 0.00 38.34 3.53
541 591 4.504916 CGGGACCTGAGCGAGCAG 62.505 72.222 0.00 0.00 35.66 4.24
576 626 1.134281 GAGGAAGACGACGACGGAC 59.866 63.158 12.58 5.50 44.46 4.79
616 666 2.978018 GAACCAGCTTTTCGCCGGG 61.978 63.158 2.18 0.00 40.68 5.73
621 671 2.222027 ACAAGAGGAACCAGCTTTTCG 58.778 47.619 0.00 0.00 0.00 3.46
687 737 4.274459 GCAGAGAGAGAGAGAGAGAATCAC 59.726 50.000 0.00 0.00 37.82 3.06
695 763 0.552848 AGGGGCAGAGAGAGAGAGAG 59.447 60.000 0.00 0.00 0.00 3.20
699 767 0.258484 TCAGAGGGGCAGAGAGAGAG 59.742 60.000 0.00 0.00 0.00 3.20
700 768 0.932955 ATCAGAGGGGCAGAGAGAGA 59.067 55.000 0.00 0.00 0.00 3.10
701 769 1.133388 AGATCAGAGGGGCAGAGAGAG 60.133 57.143 0.00 0.00 0.00 3.20
702 770 0.932955 AGATCAGAGGGGCAGAGAGA 59.067 55.000 0.00 0.00 0.00 3.10
703 771 1.042229 CAGATCAGAGGGGCAGAGAG 58.958 60.000 0.00 0.00 0.00 3.20
704 772 0.633378 TCAGATCAGAGGGGCAGAGA 59.367 55.000 0.00 0.00 0.00 3.10
705 773 1.345089 CATCAGATCAGAGGGGCAGAG 59.655 57.143 0.00 0.00 0.00 3.35
706 774 1.421480 CATCAGATCAGAGGGGCAGA 58.579 55.000 0.00 0.00 0.00 4.26
707 775 0.397187 CCATCAGATCAGAGGGGCAG 59.603 60.000 10.73 0.00 35.88 4.85
708 776 1.703014 GCCATCAGATCAGAGGGGCA 61.703 60.000 18.93 0.00 39.76 5.36
717 785 2.548920 CCTAAACCGGAGCCATCAGATC 60.549 54.545 9.46 0.00 0.00 2.75
761 829 2.374170 ACCAACCGGGAGTAGAAACAAT 59.626 45.455 6.32 0.00 41.15 2.71
815 895 0.479378 GGGAGGGAGGTAGATCGACT 59.521 60.000 5.91 0.00 0.00 4.18
816 896 0.479378 AGGGAGGGAGGTAGATCGAC 59.521 60.000 0.00 0.00 0.00 4.20
827 907 1.432024 GGCTATGTAGGTAGGGAGGGA 59.568 57.143 0.00 0.00 0.00 4.20
828 908 1.891450 CGGCTATGTAGGTAGGGAGGG 60.891 61.905 0.00 0.00 0.00 4.30
848 937 2.430921 CGAGGAGTGCGTGGACAC 60.431 66.667 0.00 0.00 41.02 3.67
849 938 4.357947 GCGAGGAGTGCGTGGACA 62.358 66.667 0.00 0.00 0.00 4.02
850 939 3.973267 GAGCGAGGAGTGCGTGGAC 62.973 68.421 0.00 0.00 37.44 4.02
865 962 3.219224 CTCTGGAGCCTGGAGAGC 58.781 66.667 0.00 0.00 0.00 4.09
883 980 2.366916 ACTGGTCTGAAGTCTGAAGTGG 59.633 50.000 0.00 0.00 0.00 4.00
905 1009 3.136443 TGTGGGAAAGAACAGTGAGATGT 59.864 43.478 0.00 0.00 33.96 3.06
916 1020 1.149101 AGGAAGGCTGTGGGAAAGAA 58.851 50.000 0.00 0.00 0.00 2.52
926 1030 0.671781 CACACGGAGAAGGAAGGCTG 60.672 60.000 0.00 0.00 0.00 4.85
955 1059 1.517832 CACTGCCTCCTAACCTCCG 59.482 63.158 0.00 0.00 0.00 4.63
1031 1161 6.657966 TGCATCAGAAATTCAGTTGAGAATCT 59.342 34.615 0.00 0.00 37.24 2.40
1032 1162 6.849502 TGCATCAGAAATTCAGTTGAGAATC 58.150 36.000 0.00 0.00 37.24 2.52
1039 1170 7.458409 AGTAACATGCATCAGAAATTCAGTT 57.542 32.000 0.00 0.00 0.00 3.16
1040 1171 7.607607 TGTAGTAACATGCATCAGAAATTCAGT 59.392 33.333 0.00 0.00 0.00 3.41
1085 1224 3.795688 ACCATTCATCTGGTCACAACT 57.204 42.857 0.00 0.00 46.79 3.16
1093 1232 3.470709 ACGCAGATAACCATTCATCTGG 58.529 45.455 12.18 6.25 45.45 3.86
1096 1235 3.743396 GGAGACGCAGATAACCATTCATC 59.257 47.826 0.00 0.00 0.00 2.92
1097 1236 3.134623 TGGAGACGCAGATAACCATTCAT 59.865 43.478 0.00 0.00 0.00 2.57
1098 1237 2.499693 TGGAGACGCAGATAACCATTCA 59.500 45.455 0.00 0.00 0.00 2.57
1099 1238 3.126831 CTGGAGACGCAGATAACCATTC 58.873 50.000 0.00 0.00 0.00 2.67
1101 1240 2.111384 ACTGGAGACGCAGATAACCAT 58.889 47.619 0.00 0.00 0.00 3.55
1102 1241 1.557099 ACTGGAGACGCAGATAACCA 58.443 50.000 0.00 0.00 0.00 3.67
1103 1242 3.795623 TTACTGGAGACGCAGATAACC 57.204 47.619 0.00 0.00 0.00 2.85
1104 1243 6.663944 AATTTTACTGGAGACGCAGATAAC 57.336 37.500 0.00 0.00 0.00 1.89
1105 1244 8.958119 AATAATTTTACTGGAGACGCAGATAA 57.042 30.769 0.00 0.00 0.00 1.75
1106 1245 8.958119 AAATAATTTTACTGGAGACGCAGATA 57.042 30.769 0.00 0.00 0.00 1.98
1107 1246 7.865706 AAATAATTTTACTGGAGACGCAGAT 57.134 32.000 0.00 0.00 0.00 2.90
1108 1247 7.174253 ACAAAATAATTTTACTGGAGACGCAGA 59.826 33.333 0.00 0.00 0.00 4.26
1109 1248 7.271223 CACAAAATAATTTTACTGGAGACGCAG 59.729 37.037 0.00 0.00 0.00 5.18
1110 1249 7.081349 CACAAAATAATTTTACTGGAGACGCA 58.919 34.615 0.00 0.00 0.00 5.24
1111 1250 6.033513 GCACAAAATAATTTTACTGGAGACGC 59.966 38.462 0.00 0.00 0.00 5.19
1112 1251 6.526674 GGCACAAAATAATTTTACTGGAGACG 59.473 38.462 0.00 0.00 0.00 4.18
1113 1252 7.602753 AGGCACAAAATAATTTTACTGGAGAC 58.397 34.615 0.00 0.00 0.00 3.36
1114 1253 7.775053 AGGCACAAAATAATTTTACTGGAGA 57.225 32.000 0.00 0.00 0.00 3.71
1133 1272 6.317391 AGTCTATATGAAAGCTGAAAAGGCAC 59.683 38.462 0.00 0.00 0.00 5.01
1163 1302 7.551035 AGAATAAGAGAACACATGCTCATTC 57.449 36.000 0.00 0.00 33.62 2.67
1232 1389 7.184175 CAAAGACTTGACTTGCTTTTGCAGC 62.184 44.000 0.00 0.00 45.21 5.25
1233 1390 4.266976 CAAAGACTTGACTTGCTTTTGCAG 59.733 41.667 0.00 0.00 45.21 4.41
1234 1391 4.175516 CAAAGACTTGACTTGCTTTTGCA 58.824 39.130 0.00 0.00 43.91 4.08
1235 1392 4.032104 CACAAAGACTTGACTTGCTTTTGC 59.968 41.667 0.00 0.00 39.98 3.68
1236 1393 5.061311 CACACAAAGACTTGACTTGCTTTTG 59.939 40.000 0.00 0.00 36.33 2.44
1237 1394 5.163513 CACACAAAGACTTGACTTGCTTTT 58.836 37.500 0.00 0.00 36.33 2.27
1271 1428 1.531264 CGCTGCTGCTGCTATCTTTTG 60.531 52.381 25.43 7.08 40.48 2.44
1384 1545 2.208431 AGAGTAGCATCATCGCTTTGC 58.792 47.619 0.00 0.00 43.56 3.68
1398 1559 0.175073 ACCGGCGGCTTAAAGAGTAG 59.825 55.000 28.71 0.00 0.00 2.57
1424 1587 9.298774 CAAGAAAGGAAGAGATTAATTGCATTC 57.701 33.333 0.00 0.00 0.00 2.67
1425 1588 8.255905 CCAAGAAAGGAAGAGATTAATTGCATT 58.744 33.333 0.00 0.00 0.00 3.56
1426 1589 7.398332 ACCAAGAAAGGAAGAGATTAATTGCAT 59.602 33.333 0.00 0.00 0.00 3.96
1436 1599 2.489073 GGCCAACCAAGAAAGGAAGAGA 60.489 50.000 0.00 0.00 35.26 3.10
1437 1600 1.889170 GGCCAACCAAGAAAGGAAGAG 59.111 52.381 0.00 0.00 35.26 2.85
1455 1618 5.008712 GCAAACACTAGTAGGGAATAATGGC 59.991 44.000 6.38 0.00 0.00 4.40
1475 1639 2.034124 AGAAGCCTGCAGAAAAGCAAA 58.966 42.857 17.39 0.00 45.13 3.68
1491 1655 3.760684 AGGCATGGAAACTAAAGCAGAAG 59.239 43.478 0.00 0.00 0.00 2.85
1492 1656 3.766545 AGGCATGGAAACTAAAGCAGAA 58.233 40.909 0.00 0.00 0.00 3.02
1506 1680 4.038402 GGAGAATTGGTTGATTAGGCATGG 59.962 45.833 0.00 0.00 0.00 3.66
1576 1750 6.770785 AGCAAGAACAGTATGGTTAGAACAAA 59.229 34.615 0.00 0.00 33.00 2.83
1583 1757 6.526526 TGTACAAGCAAGAACAGTATGGTTA 58.473 36.000 0.00 0.00 33.00 2.85
1584 1758 5.373222 TGTACAAGCAAGAACAGTATGGTT 58.627 37.500 0.00 0.00 33.00 3.67
1585 1759 4.968259 TGTACAAGCAAGAACAGTATGGT 58.032 39.130 0.00 0.00 42.46 3.55
1586 1760 5.643348 TGATGTACAAGCAAGAACAGTATGG 59.357 40.000 0.00 0.00 43.62 2.74
1587 1761 6.726258 TGATGTACAAGCAAGAACAGTATG 57.274 37.500 0.00 0.00 46.00 2.39
1588 1762 7.826252 AGATTGATGTACAAGCAAGAACAGTAT 59.174 33.333 16.41 1.97 45.87 2.12
1644 1822 5.045872 GCAACACTTGAAGCAGAGATTTTT 58.954 37.500 0.00 0.00 0.00 1.94
1645 1823 4.098349 TGCAACACTTGAAGCAGAGATTTT 59.902 37.500 0.00 0.00 32.48 1.82
1664 1842 7.934665 TGTAAGACTGTAGGAAAGTAAATGCAA 59.065 33.333 0.00 0.00 0.00 4.08
1688 1869 1.181098 GCCACTGAAGCATTGGGTGT 61.181 55.000 6.04 0.00 35.19 4.16
1689 1870 1.180456 TGCCACTGAAGCATTGGGTG 61.180 55.000 6.04 0.00 35.19 4.61
1717 1898 5.938125 GTGGAGTCCATTGCTTAGAAAGTTA 59.062 40.000 16.67 0.00 35.28 2.24
1718 1899 4.762251 GTGGAGTCCATTGCTTAGAAAGTT 59.238 41.667 16.67 0.00 35.28 2.66
1719 1900 4.042187 AGTGGAGTCCATTGCTTAGAAAGT 59.958 41.667 16.67 0.00 35.28 2.66
1720 1901 4.583871 AGTGGAGTCCATTGCTTAGAAAG 58.416 43.478 16.67 0.00 35.28 2.62
1721 1902 4.640771 AGTGGAGTCCATTGCTTAGAAA 57.359 40.909 16.67 0.00 35.28 2.52
1722 1903 4.326826 CAAGTGGAGTCCATTGCTTAGAA 58.673 43.478 16.67 0.00 35.28 2.10
1723 1904 3.307691 CCAAGTGGAGTCCATTGCTTAGA 60.308 47.826 16.67 0.00 35.28 2.10
1835 2018 1.741394 GCGTACACCCTACCCATGAAC 60.741 57.143 0.00 0.00 0.00 3.18
1864 2047 5.416271 AAAATGAATGCTTGCTCTCCATT 57.584 34.783 0.00 0.00 32.29 3.16
1866 2049 4.877378 AAAAATGAATGCTTGCTCTCCA 57.123 36.364 0.00 0.00 0.00 3.86
1902 2085 2.002586 CCAACAAGTACCATCTCAGCG 58.997 52.381 0.00 0.00 0.00 5.18
1937 2120 6.030548 TCAGTATGAACCAACTCAGAGAAG 57.969 41.667 3.79 0.00 45.97 2.85
1984 2167 0.870393 CCTGTAGTGCTGCACAAGTG 59.130 55.000 31.90 18.89 36.74 3.16
1985 2168 0.469917 ACCTGTAGTGCTGCACAAGT 59.530 50.000 31.90 18.49 36.74 3.16
1986 2169 2.069273 GTACCTGTAGTGCTGCACAAG 58.931 52.381 31.90 24.01 36.74 3.16
1987 2170 1.414550 TGTACCTGTAGTGCTGCACAA 59.585 47.619 31.90 17.13 36.74 3.33
1988 2171 1.000843 CTGTACCTGTAGTGCTGCACA 59.999 52.381 31.90 16.62 36.74 4.57
1989 2172 1.673033 CCTGTACCTGTAGTGCTGCAC 60.673 57.143 24.59 24.59 34.10 4.57
1990 2173 0.608130 CCTGTACCTGTAGTGCTGCA 59.392 55.000 0.00 0.00 31.32 4.41
1991 2174 0.608640 ACCTGTACCTGTAGTGCTGC 59.391 55.000 0.00 0.00 31.32 5.25
1992 2175 3.006967 AGAAACCTGTACCTGTAGTGCTG 59.993 47.826 0.00 0.00 31.32 4.41
1993 2176 3.240302 AGAAACCTGTACCTGTAGTGCT 58.760 45.455 0.00 0.00 31.32 4.40
1994 2177 3.679824 AGAAACCTGTACCTGTAGTGC 57.320 47.619 0.00 0.00 0.00 4.40
1995 2178 5.209818 TGAAGAAACCTGTACCTGTAGTG 57.790 43.478 0.00 0.00 0.00 2.74
1996 2179 4.900054 ACTGAAGAAACCTGTACCTGTAGT 59.100 41.667 0.00 0.00 0.00 2.73
1997 2180 5.470047 ACTGAAGAAACCTGTACCTGTAG 57.530 43.478 0.00 0.00 0.00 2.74
1998 2181 5.047519 GCTACTGAAGAAACCTGTACCTGTA 60.048 44.000 0.00 0.00 0.00 2.74
1999 2182 4.262506 GCTACTGAAGAAACCTGTACCTGT 60.263 45.833 0.00 0.00 0.00 4.00
2000 2183 4.021016 AGCTACTGAAGAAACCTGTACCTG 60.021 45.833 0.00 0.00 0.00 4.00
2001 2184 4.161102 AGCTACTGAAGAAACCTGTACCT 58.839 43.478 0.00 0.00 0.00 3.08
2002 2185 4.538746 AGCTACTGAAGAAACCTGTACC 57.461 45.455 0.00 0.00 0.00 3.34
2025 2228 1.253100 AACACCCTATGCCCAAAACG 58.747 50.000 0.00 0.00 0.00 3.60
2349 2804 8.295288 AGAAAATACTGAAAACAGAGCAATGAG 58.705 33.333 0.00 0.00 0.00 2.90
2387 2842 3.746492 AGCAGTTTCAGTTTCCGTGTATC 59.254 43.478 0.00 0.00 0.00 2.24
2416 2871 5.413833 AGCGGCTCAAATATTGATAAGATGG 59.586 40.000 0.00 0.00 39.30 3.51
2433 2888 2.020131 CATTCATCACCAGCGGCTC 58.980 57.895 0.00 0.00 0.00 4.70
2440 2895 6.839124 AGAACTTAATTGCATTCATCACCA 57.161 33.333 0.00 0.00 0.00 4.17
2495 2950 0.672342 CCTGCAGAAAAGCAAGCACT 59.328 50.000 17.39 0.00 45.13 4.40
2515 2970 0.879765 AACTAAAGCAGCAGCAGCAG 59.120 50.000 12.92 3.34 45.49 4.24
2516 2971 1.321474 AAACTAAAGCAGCAGCAGCA 58.679 45.000 12.92 0.00 45.49 4.41
2561 3016 9.665264 CAACTGGACTAAAAGATAAGTGTTTTC 57.335 33.333 0.00 0.00 33.43 2.29
2641 3098 3.365767 GCACTTGAAGAAGAGATTGGTGC 60.366 47.826 0.00 0.00 40.11 5.01
2644 3101 3.119919 GCAGCACTTGAAGAAGAGATTGG 60.120 47.826 0.00 0.00 32.98 3.16
2676 3133 2.945440 GCATTGGGCATAAGACTGTGGA 60.945 50.000 0.00 0.00 43.97 4.02
2783 3246 7.256083 CCAAATTCTGAAGTCCTTCCTTTCATT 60.256 37.037 4.67 0.00 38.77 2.57
2808 3271 6.989659 TCTATCCATGAAAACGGTACTATCC 58.010 40.000 0.00 0.00 0.00 2.59
2812 3275 5.187186 ACACTCTATCCATGAAAACGGTACT 59.813 40.000 0.00 0.00 0.00 2.73
2842 3305 2.121009 GCTTTCTCTCCGTAAGATCGC 58.879 52.381 0.00 0.00 43.02 4.58
2893 3357 6.010560 AGGGTTATAAATTCCCCAAGTACCAA 60.011 38.462 10.63 0.00 41.95 3.67
2924 3391 6.224665 TCCCAATGGAAATGATTGATTCAC 57.775 37.500 0.00 0.00 37.86 3.18
3020 3490 2.629137 TGAAGAAACCTGTACGGCTGTA 59.371 45.455 0.00 0.00 35.61 2.74
3021 3491 1.414919 TGAAGAAACCTGTACGGCTGT 59.585 47.619 2.42 2.42 35.61 4.40
3022 3492 2.069273 CTGAAGAAACCTGTACGGCTG 58.931 52.381 0.00 0.00 35.61 4.85
3023 3493 1.692519 ACTGAAGAAACCTGTACGGCT 59.307 47.619 0.00 0.00 35.61 5.52
3024 3494 2.165319 ACTGAAGAAACCTGTACGGC 57.835 50.000 0.00 0.00 35.61 5.68
3025 3495 3.251571 GCTACTGAAGAAACCTGTACGG 58.748 50.000 0.00 0.00 39.35 4.02
3026 3496 3.056749 AGGCTACTGAAGAAACCTGTACG 60.057 47.826 0.00 0.00 0.00 3.67
3052 3522 5.376625 TCTATGAAACATCCTATGCCCAAC 58.623 41.667 0.00 0.00 0.00 3.77
3106 3620 4.644103 AACAATATGAATGGACAGCAGC 57.356 40.909 0.00 0.00 0.00 5.25
3200 3715 5.476614 ACCAACTGTACCGAGAATCTAAAC 58.523 41.667 0.00 0.00 0.00 2.01
3264 3780 5.888982 TCAGAAAGTACTGAAAAGGGAGT 57.111 39.130 0.00 0.00 42.79 3.85
3379 3895 6.095440 ACCAAAATCATGCCTATGTTGTCTAC 59.905 38.462 0.00 0.00 35.73 2.59
3424 3940 6.953520 TGACAGAAAACCCAAATCTTATGGAT 59.046 34.615 0.00 0.00 40.56 3.41
3427 3943 8.059798 AGATGACAGAAAACCCAAATCTTATG 57.940 34.615 0.00 0.00 0.00 1.90
3430 3947 6.983906 AAGATGACAGAAAACCCAAATCTT 57.016 33.333 0.00 0.00 0.00 2.40
3459 3976 0.723414 CAGCAGTAACATGACTGGCG 59.277 55.000 14.47 3.26 45.85 5.69
3533 4050 5.045651 TCCAAATAGACAAGCTCCATCTTCA 60.046 40.000 0.00 0.00 0.00 3.02
3546 4063 6.789268 TCCATTTCTCCTTTCCAAATAGACA 58.211 36.000 0.00 0.00 0.00 3.41
3795 4312 2.953284 AGATCATCATCTTGGCAGGG 57.047 50.000 0.00 0.00 35.67 4.45
3907 4424 0.613777 GAAGGACCGAGGGTGACATT 59.386 55.000 0.00 0.00 35.25 2.71
3982 4499 1.186267 AAGAACGAGGGGCTCTTCGT 61.186 55.000 19.16 19.16 40.76 3.85
4013 4530 0.811281 CCGGGTTTTCCTCATCTTGC 59.189 55.000 0.00 0.00 40.46 4.01
4041 4558 3.006859 TCTCTGACTGTGTTATGGTGTGG 59.993 47.826 0.00 0.00 0.00 4.17
4071 4588 1.552337 CATGTCTCCGGGGATATCAGG 59.448 57.143 11.19 0.00 0.00 3.86
4158 4675 4.394712 CAAGAAGGCGCCGTCCCT 62.395 66.667 34.31 21.51 0.00 4.20
4161 4678 3.491652 GAGCAAGAAGGCGCCGTC 61.492 66.667 31.81 31.81 39.27 4.79
4266 4783 1.758862 GGGAGCCCATCTTTCCAAATG 59.241 52.381 0.00 0.00 35.81 2.32
4269 4786 0.625849 GAGGGAGCCCATCTTTCCAA 59.374 55.000 8.53 0.00 38.92 3.53
4303 4820 2.292267 CACTGCCATAGGATTGTCCAC 58.708 52.381 0.00 0.00 39.61 4.02
4320 4837 0.250467 CAGGGCTTGCAGTGTACACT 60.250 55.000 22.95 22.95 43.61 3.55
4321 4838 0.535102 ACAGGGCTTGCAGTGTACAC 60.535 55.000 18.56 18.56 0.00 2.90
4447 4964 1.724929 CGACGAGTTTCGACACGCT 60.725 57.895 5.38 0.00 43.74 5.07
4494 5011 3.775654 GACCCGTCTGAGCCCAGG 61.776 72.222 0.00 0.00 40.76 4.45
4527 5044 2.609459 GGAGCCATACATGACAAACTCG 59.391 50.000 0.00 0.00 0.00 4.18
4596 5113 4.299796 TTCACCAGCCCCTTGCCC 62.300 66.667 0.00 0.00 42.71 5.36
4659 5176 1.276989 CTTCCCCATGCAGCATGTTTT 59.723 47.619 29.57 0.00 39.94 2.43
4788 5305 1.080093 GTTGGTCGGCAGATCGTCA 60.080 57.895 0.00 0.00 0.00 4.35
4801 5318 3.953775 CGCCACCTCCTGGTTGGT 61.954 66.667 8.01 8.01 46.05 3.67
4909 5426 2.461695 TGCCTTCTTACTCTCCTCTGG 58.538 52.381 0.00 0.00 0.00 3.86
4915 5432 2.303311 ACCACCTTGCCTTCTTACTCTC 59.697 50.000 0.00 0.00 0.00 3.20
4916 5433 2.039084 CACCACCTTGCCTTCTTACTCT 59.961 50.000 0.00 0.00 0.00 3.24
4919 5439 0.881796 GCACCACCTTGCCTTCTTAC 59.118 55.000 0.00 0.00 36.42 2.34
4953 5473 2.656069 GCCGTGGTAGCCTCTTGGA 61.656 63.158 0.00 0.00 34.57 3.53
5146 5666 1.804151 TCTGAATTGTGTGCTTACCGC 59.196 47.619 0.00 0.00 39.77 5.68
5154 5674 7.596494 ACATAAAATCCTGTCTGAATTGTGTG 58.404 34.615 0.00 0.00 0.00 3.82
5155 5675 7.765695 ACATAAAATCCTGTCTGAATTGTGT 57.234 32.000 0.00 0.00 0.00 3.72
5191 5711 3.884895 ACGGAGATGAACAATATTGCCA 58.115 40.909 15.48 13.42 0.00 4.92
5271 5791 4.208686 GTACAGGCCCTCCGCGAG 62.209 72.222 8.23 2.69 38.94 5.03
5285 5805 3.445857 GGCGTCAAAGTAGAGGATGTAC 58.554 50.000 0.00 0.00 34.61 2.90
5395 5915 4.275936 CAGTTTCTTCAACCCAACTACAGG 59.724 45.833 0.00 0.00 35.77 4.00
5459 5979 2.417379 GCTCGAGCTCTGGACATTTACA 60.417 50.000 29.88 0.00 38.21 2.41
5460 5980 2.197577 GCTCGAGCTCTGGACATTTAC 58.802 52.381 29.88 0.00 38.21 2.01
5461 5981 2.586258 GCTCGAGCTCTGGACATTTA 57.414 50.000 29.88 0.00 38.21 1.40
5462 5982 3.450028 GCTCGAGCTCTGGACATTT 57.550 52.632 29.88 0.00 38.21 2.32
5517 6041 5.542635 TGTGATTCCTACTACAGTTTCAGGT 59.457 40.000 0.00 0.00 0.00 4.00
5609 6134 2.216488 CGTCAATCGAGTTAGGCAATCG 59.784 50.000 0.00 0.00 42.86 3.34
5666 6191 1.723608 CGTGGTGAAAACTGCAGCCA 61.724 55.000 15.27 9.15 33.05 4.75
5690 6215 3.944015 AGCTTCAGTGGCTAATGTGAATC 59.056 43.478 0.00 0.00 38.36 2.52
5716 6241 7.527084 AGTTTCGAGTAGCTGATAAATCAAC 57.473 36.000 0.00 0.00 36.18 3.18
5717 6242 9.647797 TTTAGTTTCGAGTAGCTGATAAATCAA 57.352 29.630 0.00 0.00 36.18 2.57
5718 6243 9.647797 TTTTAGTTTCGAGTAGCTGATAAATCA 57.352 29.630 0.00 0.00 35.16 2.57
5721 6246 9.647797 TGATTTTAGTTTCGAGTAGCTGATAAA 57.352 29.630 0.00 0.00 0.00 1.40
5722 6247 9.817809 ATGATTTTAGTTTCGAGTAGCTGATAA 57.182 29.630 0.00 0.00 0.00 1.75
5723 6248 9.249457 CATGATTTTAGTTTCGAGTAGCTGATA 57.751 33.333 0.00 0.00 0.00 2.15
5724 6249 7.766278 ACATGATTTTAGTTTCGAGTAGCTGAT 59.234 33.333 0.00 0.00 0.00 2.90
5725 6250 7.097192 ACATGATTTTAGTTTCGAGTAGCTGA 58.903 34.615 0.00 0.00 0.00 4.26
5726 6251 7.295952 ACATGATTTTAGTTTCGAGTAGCTG 57.704 36.000 0.00 0.00 0.00 4.24
5727 6252 8.997621 TTACATGATTTTAGTTTCGAGTAGCT 57.002 30.769 0.00 0.00 0.00 3.32
5752 6289 5.240891 CCGTATGTTCTGCATCAGGAATAT 58.759 41.667 0.00 0.00 38.94 1.28
5856 6394 2.490991 ACCGTGTTTCTTTCTACAGCC 58.509 47.619 0.00 0.00 0.00 4.85
5949 6487 5.390387 ACAACAATTAAGTAGCCCCTTTCA 58.610 37.500 0.00 0.00 0.00 2.69
5988 6527 5.932619 TCCGTATTTTCTCCTCAGATGAA 57.067 39.130 0.00 0.00 0.00 2.57
6175 6714 0.535553 GGTGGTTACCGGAACAAGCA 60.536 55.000 9.46 12.14 39.03 3.91
6231 6776 2.993449 TGTGTTCGCGTCAGTATACA 57.007 45.000 5.77 0.55 0.00 2.29
6286 6831 3.369997 GCTACCTTGAGAAAGAGGGGAAG 60.370 52.174 0.00 0.00 37.36 3.46
6325 6870 2.034879 GCGCTTCTTGCACCAGCTA 61.035 57.895 0.00 0.00 43.06 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.