Multiple sequence alignment - TraesCS4B01G338500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G338500 chr4B 100.000 6629 0 0 1 6629 631532953 631526325 0.000000e+00 12242.0
1 TraesCS4B01G338500 chr4B 84.271 1227 141 36 3784 4994 631070907 631072097 0.000000e+00 1149.0
2 TraesCS4B01G338500 chr4B 86.420 405 40 10 1653 2054 631070515 631070907 4.750000e-116 429.0
3 TraesCS4B01G338500 chr4B 100.000 30 0 0 6391 6420 631526534 631526505 1.000000e-03 56.5
4 TraesCS4B01G338500 chr4B 100.000 30 0 0 6420 6449 631526563 631526534 1.000000e-03 56.5
5 TraesCS4B01G338500 chr5A 95.411 2637 95 12 1132 3762 672827492 672824876 0.000000e+00 4176.0
6 TraesCS4B01G338500 chr5A 96.859 764 23 1 3747 4510 672823857 672823095 0.000000e+00 1277.0
7 TraesCS4B01G338500 chr5A 88.944 1013 55 24 5417 6420 672820358 672819394 0.000000e+00 1197.0
8 TraesCS4B01G338500 chr5A 84.013 1226 148 33 3784 4994 672509769 672508577 0.000000e+00 1134.0
9 TraesCS4B01G338500 chr5A 90.669 718 34 15 4659 5348 672822904 672822192 0.000000e+00 924.0
10 TraesCS4B01G338500 chr5A 96.094 384 15 0 562 945 672828095 672827712 1.570000e-175 627.0
11 TraesCS4B01G338500 chr5A 84.665 463 50 13 1595 2054 672510213 672509769 6.100000e-120 442.0
12 TraesCS4B01G338500 chr5A 88.398 181 20 1 6241 6420 31381969 31381789 4.030000e-52 217.0
13 TraesCS4B01G338500 chr5A 86.076 158 8 5 943 1099 672827632 672827488 2.470000e-34 158.0
14 TraesCS4B01G338500 chr4D 95.250 1600 65 7 3601 5198 491950110 491948520 0.000000e+00 2523.0
15 TraesCS4B01G338500 chr4D 93.818 1650 66 11 3727 5348 493757228 493758869 0.000000e+00 2449.0
16 TraesCS4B01G338500 chr4D 96.359 1291 39 5 1375 2665 493738312 493739594 0.000000e+00 2117.0
17 TraesCS4B01G338500 chr4D 84.352 1227 142 35 3784 4994 492814976 492813784 0.000000e+00 1157.0
18 TraesCS4B01G338500 chr4D 93.701 762 36 6 2973 3729 493753934 493754688 0.000000e+00 1131.0
19 TraesCS4B01G338500 chr4D 88.504 722 63 10 2272 2989 491951528 491950823 0.000000e+00 856.0
20 TraesCS4B01G338500 chr4D 92.785 596 28 6 5197 5784 491948464 491947876 0.000000e+00 848.0
21 TraesCS4B01G338500 chr4D 90.328 641 43 11 5462 6095 493760612 493761240 0.000000e+00 822.0
22 TraesCS4B01G338500 chr4D 91.213 569 42 8 1 565 439164845 439165409 0.000000e+00 767.0
23 TraesCS4B01G338500 chr4D 92.732 399 14 9 562 945 493736425 493736823 4.490000e-156 562.0
24 TraesCS4B01G338500 chr4D 96.928 293 8 1 2686 2977 493739583 493739875 2.150000e-134 490.0
25 TraesCS4B01G338500 chr4D 86.420 405 40 10 1653 2054 492815368 492814976 4.750000e-116 429.0
26 TraesCS4B01G338500 chr4D 93.133 233 12 3 1132 1361 493737044 493737275 8.230000e-89 339.0
27 TraesCS4B01G338500 chr4D 87.027 185 24 0 6420 6604 255096495 255096311 6.740000e-50 209.0
28 TraesCS4B01G338500 chr4D 94.393 107 5 1 994 1099 493736942 493737048 5.320000e-36 163.0
29 TraesCS4B01G338500 chr4D 95.556 45 2 0 943 987 493736906 493736950 9.220000e-09 73.1
30 TraesCS4B01G338500 chr5B 92.212 565 40 3 1 562 33632119 33632682 0.000000e+00 797.0
31 TraesCS4B01G338500 chr5B 91.213 569 45 5 1 566 455877726 455878292 0.000000e+00 769.0
32 TraesCS4B01G338500 chr5B 91.005 567 47 4 1 564 403839652 403840217 0.000000e+00 761.0
33 TraesCS4B01G338500 chr5B 75.758 165 35 4 4118 4279 531643021 531643183 1.980000e-10 78.7
34 TraesCS4B01G338500 chr5B 86.441 59 7 1 3531 3588 479726823 479726881 5.550000e-06 63.9
35 TraesCS4B01G338500 chr6B 91.549 568 43 4 1 564 617036420 617036986 0.000000e+00 778.0
36 TraesCS4B01G338500 chr6B 96.667 90 2 1 5089 5178 458503572 458503484 1.490000e-31 148.0
37 TraesCS4B01G338500 chr7B 91.259 572 45 5 1 570 574484246 574483678 0.000000e+00 774.0
38 TraesCS4B01G338500 chr3B 91.373 568 45 4 1 565 821343731 821343165 0.000000e+00 774.0
39 TraesCS4B01G338500 chr3B 88.889 54 3 2 3536 3588 222818610 222818559 5.550000e-06 63.9
40 TraesCS4B01G338500 chr1D 91.005 567 43 8 1 562 52347131 52346568 0.000000e+00 758.0
41 TraesCS4B01G338500 chr1B 90.829 567 49 3 1 565 49669569 49669004 0.000000e+00 756.0
42 TraesCS4B01G338500 chr1B 91.781 73 6 0 6535 6607 298160258 298160186 1.180000e-17 102.0
43 TraesCS4B01G338500 chr1B 87.273 55 5 2 3537 3590 336072084 336072137 2.000000e-05 62.1
44 TraesCS4B01G338500 chr5D 89.840 187 19 0 6420 6606 354729909 354729723 2.390000e-59 241.0
45 TraesCS4B01G338500 chr5D 86.441 59 7 1 3531 3588 399614510 399614568 5.550000e-06 63.9
46 TraesCS4B01G338500 chr5D 92.857 42 3 0 3949 3990 437696077 437696118 2.000000e-05 62.1
47 TraesCS4B01G338500 chr5D 91.111 45 4 0 3949 3993 437808984 437808940 2.000000e-05 62.1
48 TraesCS4B01G338500 chr6A 86.243 189 24 2 6234 6420 617527407 617527219 3.130000e-48 204.0
49 TraesCS4B01G338500 chr2B 85.714 189 24 2 6235 6420 2963535 2963723 5.240000e-46 196.0
50 TraesCS4B01G338500 chr2B 87.931 116 9 4 5077 5191 214829056 214828945 1.500000e-26 132.0
51 TraesCS4B01G338500 chr2B 93.023 43 2 1 3547 3588 91040403 91040361 2.000000e-05 62.1
52 TraesCS4B01G338500 chr7A 84.865 185 26 2 6235 6417 252455361 252455545 1.140000e-42 185.0
53 TraesCS4B01G338500 chr3A 83.957 187 27 3 6234 6417 709885625 709885811 6.830000e-40 176.0
54 TraesCS4B01G338500 chr3A 83.957 187 27 3 6234 6417 709913344 709913530 6.830000e-40 176.0
55 TraesCS4B01G338500 chr3D 98.824 85 1 0 5094 5178 22679144 22679060 1.150000e-32 152.0
56 TraesCS4B01G338500 chr3D 98.824 85 1 0 5094 5178 22767814 22767898 1.150000e-32 152.0
57 TraesCS4B01G338500 chr3D 98.824 85 1 0 5094 5178 436676984 436676900 1.150000e-32 152.0
58 TraesCS4B01G338500 chr3D 88.889 54 3 2 3536 3588 152489401 152489350 5.550000e-06 63.9
59 TraesCS4B01G338500 chr6D 95.652 92 4 0 5087 5178 299191354 299191263 1.490000e-31 148.0
60 TraesCS4B01G338500 chrUn 87.931 58 5 2 3531 3588 12580998 12581053 4.290000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G338500 chr4B 631526325 631532953 6628 True 12242.000000 12242 100.000000 1 6629 1 chr4B.!!$R1 6628
1 TraesCS4B01G338500 chr4B 631070515 631072097 1582 False 789.000000 1149 85.345500 1653 4994 2 chr4B.!!$F1 3341
2 TraesCS4B01G338500 chr5A 672819394 672828095 8701 True 1393.166667 4176 92.342167 562 6420 6 chr5A.!!$R3 5858
3 TraesCS4B01G338500 chr5A 672508577 672510213 1636 True 788.000000 1134 84.339000 1595 4994 2 chr5A.!!$R2 3399
4 TraesCS4B01G338500 chr4D 493753934 493761240 7306 False 1467.333333 2449 92.615667 2973 6095 3 chr4D.!!$F3 3122
5 TraesCS4B01G338500 chr4D 491947876 491951528 3652 True 1409.000000 2523 92.179667 2272 5784 3 chr4D.!!$R2 3512
6 TraesCS4B01G338500 chr4D 492813784 492815368 1584 True 793.000000 1157 85.386000 1653 4994 2 chr4D.!!$R3 3341
7 TraesCS4B01G338500 chr4D 439164845 439165409 564 False 767.000000 767 91.213000 1 565 1 chr4D.!!$F1 564
8 TraesCS4B01G338500 chr4D 493736425 493739875 3450 False 624.016667 2117 94.850167 562 2977 6 chr4D.!!$F2 2415
9 TraesCS4B01G338500 chr5B 33632119 33632682 563 False 797.000000 797 92.212000 1 562 1 chr5B.!!$F1 561
10 TraesCS4B01G338500 chr5B 455877726 455878292 566 False 769.000000 769 91.213000 1 566 1 chr5B.!!$F3 565
11 TraesCS4B01G338500 chr5B 403839652 403840217 565 False 761.000000 761 91.005000 1 564 1 chr5B.!!$F2 563
12 TraesCS4B01G338500 chr6B 617036420 617036986 566 False 778.000000 778 91.549000 1 564 1 chr6B.!!$F1 563
13 TraesCS4B01G338500 chr7B 574483678 574484246 568 True 774.000000 774 91.259000 1 570 1 chr7B.!!$R1 569
14 TraesCS4B01G338500 chr3B 821343165 821343731 566 True 774.000000 774 91.373000 1 565 1 chr3B.!!$R2 564
15 TraesCS4B01G338500 chr1D 52346568 52347131 563 True 758.000000 758 91.005000 1 562 1 chr1D.!!$R1 561
16 TraesCS4B01G338500 chr1B 49669004 49669569 565 True 756.000000 756 90.829000 1 565 1 chr1B.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 276 0.249120 CCGCAGATATGGCCGGAATA 59.751 55.000 5.05 2.02 0.00 1.75 F
1025 1140 0.249031 GGCAACAACAGGTCAACAGC 60.249 55.000 0.00 0.00 0.00 4.40 F
2458 3602 0.179094 ATGCCATGCAATTTGAGCCG 60.179 50.000 0.00 0.00 43.62 5.52 F
2809 3955 1.200020 GAATGAACCTCCAAAGTGGCG 59.800 52.381 0.00 0.00 37.47 5.69 F
3465 4682 1.412079 AGCAATCACAACCAAGGCAA 58.588 45.000 0.00 0.00 0.00 4.52 F
4687 9619 0.185416 TTTGGCACCCCCGTTTTCTA 59.815 50.000 0.00 0.00 35.87 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 2831 0.601576 TTCTTCGCTTGCGCTTGGTA 60.602 50.0 9.73 0.00 0.0 3.25 R
2520 3664 1.155889 TGCACTGCCAATTACTGTCG 58.844 50.0 0.00 0.00 0.0 4.35 R
3467 4684 0.740149 CTTTCGGCATGCCAGCATTA 59.260 50.0 34.93 13.22 33.9 1.90 R
4371 9222 1.919600 GCCTCCTCAATCCCACTGCT 61.920 60.0 0.00 0.00 0.0 4.24 R
5400 12274 0.387878 GTCTCTGTCTCAGCACCACG 60.388 60.0 0.00 0.00 0.0 4.94 R
6558 13441 0.032267 GCCTTATCCGGACCTCTTCG 59.968 60.0 6.12 0.00 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
267 276 0.249120 CCGCAGATATGGCCGGAATA 59.751 55.000 5.05 2.02 0.00 1.75
558 573 1.889530 GCGGGGTCTGCTAGAGTTGT 61.890 60.000 0.00 0.00 0.00 3.32
595 610 1.926511 GCCACCCAAACTGCATCTCG 61.927 60.000 0.00 0.00 0.00 4.04
721 751 1.271656 CGTTTTCTACTCCTCCACGGT 59.728 52.381 0.00 0.00 0.00 4.83
813 843 0.321298 GCGTTGTTCCTCCAAGGCTA 60.321 55.000 10.35 0.00 46.96 3.93
862 892 1.673920 TCAAAGCAAGGGTTGTTCGTC 59.326 47.619 0.00 0.00 0.00 4.20
864 894 1.594331 AAGCAAGGGTTGTTCGTCTC 58.406 50.000 0.00 0.00 0.00 3.36
902 932 4.202336 CGAGGTACCTACTCATCTCCACTA 60.202 50.000 16.29 0.00 34.66 2.74
926 956 9.331282 CTAATTTGAGTAGAAATCTTCGGGATT 57.669 33.333 0.00 0.02 45.61 3.01
945 975 6.017934 CGGGATTGACATATTGTACTTGAAGG 60.018 42.308 0.00 0.00 0.00 3.46
976 1091 3.502086 TTCCAAGAGAAGAGGGGCT 57.498 52.632 0.00 0.00 0.00 5.19
1025 1140 0.249031 GGCAACAACAGGTCAACAGC 60.249 55.000 0.00 0.00 0.00 4.40
1029 1145 3.784338 CAACAACAGGTCAACAGCAAAT 58.216 40.909 0.00 0.00 0.00 2.32
1099 1215 7.642586 GCAGTGAATTTTAACAAACGTAGAAGT 59.357 33.333 0.00 0.00 0.00 3.01
1100 1216 9.155053 CAGTGAATTTTAACAAACGTAGAAGTC 57.845 33.333 0.00 0.00 0.00 3.01
1101 1217 9.106070 AGTGAATTTTAACAAACGTAGAAGTCT 57.894 29.630 0.00 0.00 0.00 3.24
1102 1218 9.712359 GTGAATTTTAACAAACGTAGAAGTCTT 57.288 29.630 0.00 0.00 0.00 3.01
1107 1223 9.925268 TTTTAACAAACGTAGAAGTCTTTGATC 57.075 29.630 0.00 0.00 0.00 2.92
1108 1224 8.651391 TTAACAAACGTAGAAGTCTTTGATCA 57.349 30.769 0.00 0.00 0.00 2.92
1109 1225 7.548196 AACAAACGTAGAAGTCTTTGATCAA 57.452 32.000 3.38 3.38 0.00 2.57
1110 1226 7.548196 ACAAACGTAGAAGTCTTTGATCAAA 57.452 32.000 19.45 19.45 0.00 2.69
1111 1227 7.981142 ACAAACGTAGAAGTCTTTGATCAAAA 58.019 30.769 20.82 9.98 0.00 2.44
1112 1228 8.621286 ACAAACGTAGAAGTCTTTGATCAAAAT 58.379 29.630 20.82 8.14 0.00 1.82
1116 1232 8.391106 ACGTAGAAGTCTTTGATCAAAATATGC 58.609 33.333 20.82 11.01 0.00 3.14
1117 1233 8.390354 CGTAGAAGTCTTTGATCAAAATATGCA 58.610 33.333 20.82 0.00 0.00 3.96
1118 1234 9.495754 GTAGAAGTCTTTGATCAAAATATGCAC 57.504 33.333 20.82 10.37 0.00 4.57
1119 1235 7.542025 AGAAGTCTTTGATCAAAATATGCACC 58.458 34.615 20.82 6.78 0.00 5.01
1120 1236 5.883661 AGTCTTTGATCAAAATATGCACCG 58.116 37.500 20.82 7.07 0.00 4.94
1121 1237 5.415701 AGTCTTTGATCAAAATATGCACCGT 59.584 36.000 20.82 0.00 0.00 4.83
1122 1238 6.597672 AGTCTTTGATCAAAATATGCACCGTA 59.402 34.615 20.82 0.00 0.00 4.02
1123 1239 6.687105 GTCTTTGATCAAAATATGCACCGTAC 59.313 38.462 20.82 0.75 0.00 3.67
1124 1240 6.597672 TCTTTGATCAAAATATGCACCGTACT 59.402 34.615 20.82 0.00 0.00 2.73
1125 1241 6.751514 TTGATCAAAATATGCACCGTACTT 57.248 33.333 5.45 0.00 0.00 2.24
1126 1242 7.851387 TTGATCAAAATATGCACCGTACTTA 57.149 32.000 5.45 0.00 0.00 2.24
1127 1243 7.241663 TGATCAAAATATGCACCGTACTTAC 57.758 36.000 0.00 0.00 0.00 2.34
1128 1244 6.819146 TGATCAAAATATGCACCGTACTTACA 59.181 34.615 0.00 0.00 0.00 2.41
1129 1245 7.334671 TGATCAAAATATGCACCGTACTTACAA 59.665 33.333 0.00 0.00 0.00 2.41
1130 1246 7.067532 TCAAAATATGCACCGTACTTACAAG 57.932 36.000 0.00 0.00 0.00 3.16
1131 1247 6.874664 TCAAAATATGCACCGTACTTACAAGA 59.125 34.615 0.00 0.00 0.00 3.02
1132 1248 6.903883 AAATATGCACCGTACTTACAAGAG 57.096 37.500 0.00 0.00 0.00 2.85
1133 1249 5.847111 ATATGCACCGTACTTACAAGAGA 57.153 39.130 0.00 0.00 0.00 3.10
1134 1250 4.530710 ATGCACCGTACTTACAAGAGAA 57.469 40.909 0.00 0.00 0.00 2.87
1135 1251 3.909430 TGCACCGTACTTACAAGAGAAG 58.091 45.455 0.00 0.00 0.00 2.85
1176 1292 4.065789 GGAGGTTAAAACAGGACAGACAG 58.934 47.826 0.00 0.00 0.00 3.51
1178 1294 3.118038 AGGTTAAAACAGGACAGACAGCA 60.118 43.478 0.00 0.00 0.00 4.41
1203 1321 4.147321 AGGTCAACAGCAAAATCAGTCAT 58.853 39.130 0.00 0.00 0.00 3.06
1219 1337 7.934855 ATCAGTCATTAGAGCTGATGTTTTT 57.065 32.000 0.00 0.00 45.09 1.94
1220 1338 9.453572 AATCAGTCATTAGAGCTGATGTTTTTA 57.546 29.630 6.99 0.00 45.80 1.52
1221 1339 8.256611 TCAGTCATTAGAGCTGATGTTTTTAC 57.743 34.615 0.00 0.00 34.72 2.01
1276 1394 0.830023 GCTGGCTTTTAACCCACCCA 60.830 55.000 0.00 0.00 0.00 4.51
1284 1402 3.495434 TTTAACCCACCCACTACACTG 57.505 47.619 0.00 0.00 0.00 3.66
1380 2522 1.089920 CTGTCTTGGCAAAGGATCCG 58.910 55.000 5.98 0.00 33.90 4.18
1397 2539 2.176889 TCCGAGCAGCCCCTTATATAC 58.823 52.381 0.00 0.00 0.00 1.47
1408 2550 6.543831 CAGCCCCTTATATACTTGCAATATCC 59.456 42.308 0.00 0.00 0.00 2.59
1418 2560 7.902920 ATACTTGCAATATCCAAATGACCTT 57.097 32.000 0.00 0.00 0.00 3.50
1419 2561 8.995027 ATACTTGCAATATCCAAATGACCTTA 57.005 30.769 0.00 0.00 0.00 2.69
1420 2562 7.716799 ACTTGCAATATCCAAATGACCTTAA 57.283 32.000 0.00 0.00 0.00 1.85
1458 2600 5.858381 TGTCTGTCATCTCAGCTAGTTTTT 58.142 37.500 0.00 0.00 35.63 1.94
1473 2615 7.010367 CAGCTAGTTTTTGCATTTTCTGTTCAA 59.990 33.333 0.00 0.00 0.00 2.69
1544 2686 7.378194 CAGCTTCCATCATAGTATATCGATTCG 59.622 40.741 1.71 0.00 0.00 3.34
1548 2690 7.920738 TCCATCATAGTATATCGATTCGTCAG 58.079 38.462 1.71 0.00 0.00 3.51
1561 2703 5.064707 TCGATTCGTCAGATTTGGGATTTTC 59.935 40.000 5.89 0.00 0.00 2.29
1689 2831 1.642762 AGGGTTGGGAAGATGCAGAAT 59.357 47.619 0.00 0.00 0.00 2.40
1737 2879 6.038271 ACGACATAGGATGCCTTAATGAAAAC 59.962 38.462 0.00 0.00 34.61 2.43
1952 3095 5.735766 CTTAAATCCTCGGAAAGTTCCTCT 58.264 41.667 8.41 0.00 45.33 3.69
1980 3123 3.069586 ACTCACCAAACAGATTGAGTCGA 59.930 43.478 0.00 0.00 44.26 4.20
2229 3373 4.281435 TCACTGATAACTTGACGGTTGGTA 59.719 41.667 0.00 0.00 0.00 3.25
2234 3378 0.466543 ACTTGACGGTTGGTACTGCA 59.533 50.000 0.00 0.00 33.73 4.41
2253 3397 6.587273 ACTGCAAACTTCTCTCTACTTTTCT 58.413 36.000 0.00 0.00 0.00 2.52
2398 3542 3.807553 TCTTGCTGTTGTGAACATCAGA 58.192 40.909 20.51 7.33 43.06 3.27
2399 3543 4.392047 TCTTGCTGTTGTGAACATCAGAT 58.608 39.130 20.51 0.00 43.06 2.90
2442 3586 1.202463 ACATCTCAGTCGTAGCCATGC 60.202 52.381 0.00 0.00 0.00 4.06
2458 3602 0.179094 ATGCCATGCAATTTGAGCCG 60.179 50.000 0.00 0.00 43.62 5.52
2520 3664 3.679502 GGCATGTTAAAGTCCACAAATGC 59.320 43.478 0.00 0.00 31.05 3.56
2542 3686 2.554032 GACAGTAATTGGCAGTGCAAGT 59.446 45.455 18.61 10.96 33.76 3.16
2695 3840 9.693739 ATTATCAGTTGAGATACTATCGATCCT 57.306 33.333 0.00 0.00 30.57 3.24
2722 3867 7.481275 TTTTCCTGTGCAAATTTCTTCATTC 57.519 32.000 0.00 0.00 0.00 2.67
2809 3955 1.200020 GAATGAACCTCCAAAGTGGCG 59.800 52.381 0.00 0.00 37.47 5.69
2816 3962 1.614317 CCTCCAAAGTGGCGAAAGGAT 60.614 52.381 0.00 0.00 37.47 3.24
3028 4234 6.271624 ACTGTATTTGAGGTTTACCCAGTAGT 59.728 38.462 0.00 0.00 36.42 2.73
3037 4243 6.060136 AGGTTTACCCAGTAGTGTTTTCTTC 58.940 40.000 0.00 0.00 36.42 2.87
3270 4486 4.645762 TGCTGTGTTGTTTGCTCAATTA 57.354 36.364 0.00 0.00 0.00 1.40
3343 4560 6.405538 TGCCCCTGTTTGATAAATCAATTTC 58.594 36.000 6.24 2.36 45.30 2.17
3465 4682 1.412079 AGCAATCACAACCAAGGCAA 58.588 45.000 0.00 0.00 0.00 4.52
3467 4684 2.369532 AGCAATCACAACCAAGGCAAAT 59.630 40.909 0.00 0.00 0.00 2.32
3540 4757 9.556030 TCAACATCTTAGCGATACGATATAAAG 57.444 33.333 0.00 0.00 0.00 1.85
3633 4904 3.077359 CAAGTGGGAAGACTCAACCATC 58.923 50.000 0.00 0.00 35.13 3.51
3868 8716 5.507077 TGTCACGTTTCTTTAAACAGATGC 58.493 37.500 0.00 0.00 44.37 3.91
4003 8851 4.818534 ATGGTGATTGTGTTGCGATATC 57.181 40.909 0.00 0.00 0.00 1.63
4031 8882 9.567848 TCATTTTTATTTCTCTTATTTCACCGC 57.432 29.630 0.00 0.00 0.00 5.68
4107 8958 6.270000 TGCACAGGCCTAATTATAGACTGTAT 59.730 38.462 18.84 1.37 41.27 2.29
4222 9073 4.213906 GCATAGCATTGTTTGTGCCTTTTT 59.786 37.500 0.00 0.00 43.50 1.94
4371 9222 1.122632 TGGGTTCCTGCGGTTCTACA 61.123 55.000 0.00 0.00 0.00 2.74
4434 9285 1.206371 GAGGTTTTAGCTGTAGGGCGA 59.794 52.381 0.00 0.00 37.29 5.54
4687 9619 0.185416 TTTGGCACCCCCGTTTTCTA 59.815 50.000 0.00 0.00 35.87 2.10
4696 9630 3.647590 ACCCCCGTTTTCTAGTCACTTAA 59.352 43.478 0.00 0.00 0.00 1.85
4955 9896 1.088306 TGTGTTCCAACAACGTCCAC 58.912 50.000 0.00 0.00 41.21 4.02
4956 9897 1.088306 GTGTTCCAACAACGTCCACA 58.912 50.000 0.00 0.00 41.21 4.17
4957 9898 1.469308 GTGTTCCAACAACGTCCACAA 59.531 47.619 0.00 0.00 41.21 3.33
4959 9900 2.098280 TGTTCCAACAACGTCCACAATG 59.902 45.455 0.00 0.00 35.67 2.82
4961 9902 2.370349 TCCAACAACGTCCACAATGTT 58.630 42.857 0.00 0.00 37.60 2.71
4962 9903 2.755655 TCCAACAACGTCCACAATGTTT 59.244 40.909 0.00 0.00 34.80 2.83
4963 9904 3.945921 TCCAACAACGTCCACAATGTTTA 59.054 39.130 0.00 0.00 34.80 2.01
5004 9998 4.520492 CCATCCCAACATTACTTAGGCATC 59.480 45.833 0.00 0.00 0.00 3.91
5055 10049 4.155280 CACAGTTGACATGATGCTGATCAA 59.845 41.667 0.00 0.00 42.02 2.57
5106 10100 4.159879 GCTTGTTAGCTACTCCCTCTGTAA 59.840 45.833 0.00 0.00 44.27 2.41
5209 10260 7.571071 ACAGTAGAGACTATATAGTAGCCCA 57.429 40.000 15.42 0.00 36.50 5.36
5225 10276 2.532250 CCCAAAGGCCCTTACTGATT 57.468 50.000 0.00 0.00 0.00 2.57
5289 10340 5.626116 GCTTTGAATGCTCCAAGGAAATGAT 60.626 40.000 0.00 0.00 0.00 2.45
5433 12307 2.770802 ACAGAGACCCCTCTCATTGATG 59.229 50.000 0.77 0.00 46.38 3.07
5500 12374 4.930463 TTATTTTGTAGCGCGAATGACA 57.070 36.364 12.10 4.27 0.00 3.58
5571 12445 1.751924 CCGTTTGGTTTGTTCCCAGAA 59.248 47.619 0.00 0.00 32.49 3.02
5602 12476 7.765009 CGTGTACGTTGATAGTTTAGATGATG 58.235 38.462 0.00 0.00 34.11 3.07
5671 12548 5.006165 GTGTGTAGCTGCACTCTTATCAATC 59.994 44.000 30.93 5.23 39.89 2.67
5719 12596 5.794894 TCCTTGTGAATTTCCAGACTACTC 58.205 41.667 0.00 0.00 0.00 2.59
5728 12605 2.937519 TCCAGACTACTCATGAGCGAT 58.062 47.619 22.83 7.77 0.00 4.58
5754 12633 7.639113 TCCTTGTTCAGTTGTGTTTATTTCT 57.361 32.000 0.00 0.00 0.00 2.52
5755 12634 8.740123 TCCTTGTTCAGTTGTGTTTATTTCTA 57.260 30.769 0.00 0.00 0.00 2.10
5763 12642 9.787435 TCAGTTGTGTTTATTTCTATACCAACT 57.213 29.630 0.00 0.00 34.58 3.16
5845 12724 2.058057 GTTTGGCAATTACAACCGCTG 58.942 47.619 0.00 0.00 0.00 5.18
5965 12844 9.863650 ATATTCATCATCCATCTTGAGAAACTT 57.136 29.630 0.00 0.00 0.00 2.66
6010 12889 0.320247 CAAGAACTCTGCTGGCGACT 60.320 55.000 0.00 0.00 0.00 4.18
6018 12897 0.528017 CTGCTGGCGACTGAGACTTA 59.472 55.000 0.00 0.00 0.00 2.24
6029 12908 2.348059 ACTGAGACTTACGTCGATCGAC 59.652 50.000 33.22 33.22 44.93 4.20
6096 12975 4.436242 ACGTAGGGCATATGAGAATACG 57.564 45.455 19.64 19.64 40.10 3.06
6132 13011 3.595709 TGACGTTTCGTGGTCAATTTC 57.404 42.857 0.00 0.00 41.37 2.17
6140 13019 3.142951 TCGTGGTCAATTTCCAAACGAT 58.857 40.909 0.00 0.00 36.68 3.73
6170 13049 1.330829 GCGGTATAGAAGTTTGCTGGC 59.669 52.381 0.00 0.00 0.00 4.85
6172 13051 1.940613 GGTATAGAAGTTTGCTGGCCG 59.059 52.381 0.00 0.00 0.00 6.13
6176 13055 0.886490 AGAAGTTTGCTGGCCGACTG 60.886 55.000 0.00 0.00 0.00 3.51
6177 13056 2.463675 GAAGTTTGCTGGCCGACTGC 62.464 60.000 0.00 0.00 43.59 4.40
6182 13061 3.200593 GCTGGCCGACTGCATCAG 61.201 66.667 0.00 0.00 43.89 2.90
6184 13063 2.046988 TGGCCGACTGCATCAGTG 60.047 61.111 3.98 0.00 45.44 3.66
6185 13064 2.821366 GGCCGACTGCATCAGTGG 60.821 66.667 3.98 3.20 45.44 4.00
6186 13065 2.046892 GCCGACTGCATCAGTGGT 60.047 61.111 3.98 0.00 45.44 4.16
6187 13066 2.393768 GCCGACTGCATCAGTGGTG 61.394 63.158 3.98 0.00 45.44 4.17
6188 13067 1.742880 CCGACTGCATCAGTGGTGG 60.743 63.158 5.34 0.40 45.44 4.61
6189 13068 2.393768 CGACTGCATCAGTGGTGGC 61.394 63.158 5.34 0.03 45.44 5.01
6190 13069 2.034687 ACTGCATCAGTGGTGGCC 59.965 61.111 5.34 0.00 43.63 5.36
6191 13070 2.034532 CTGCATCAGTGGTGGCCA 59.965 61.111 0.00 0.00 0.00 5.36
6203 13082 4.539083 TGGCCACAGCGTGTCGTT 62.539 61.111 0.00 0.00 41.24 3.85
6206 13085 3.403057 CCACAGCGTGTCGTTCGG 61.403 66.667 7.68 0.00 0.00 4.30
6212 13091 0.241749 AGCGTGTCGTTCGGTAATCA 59.758 50.000 0.00 0.00 37.26 2.57
6225 13104 4.247267 CGGTAATCAGCCGGAGTTATAA 57.753 45.455 5.05 0.00 44.98 0.98
6236 13115 3.369385 CGGAGTTATAACGTTCGCAGAT 58.631 45.455 2.82 0.00 35.04 2.90
6291 13173 2.891580 TCTGGAATCTATACGCCCTGAC 59.108 50.000 0.00 0.00 0.00 3.51
6301 13183 1.082104 CGCCCTGACGCAGAAAAAC 60.082 57.895 8.20 0.00 32.44 2.43
6317 13199 6.451393 CAGAAAAACCAAAAATATCACCCGA 58.549 36.000 0.00 0.00 0.00 5.14
6339 13222 1.078848 CCTCCAGTTGGCCGAAGAG 60.079 63.158 0.00 1.31 34.44 2.85
6340 13223 1.544825 CCTCCAGTTGGCCGAAGAGA 61.545 60.000 14.79 2.95 34.44 3.10
6361 13244 1.006102 CTCTTCGGTCTGCGGTTGT 60.006 57.895 0.00 0.00 0.00 3.32
6420 13303 2.650778 CCAACTGGGCCGAAAAGC 59.349 61.111 0.00 0.00 0.00 3.51
6427 13310 2.561373 GGCCGAAAAGCCGAAGTG 59.439 61.111 0.00 0.00 44.57 3.16
6428 13311 2.258726 GGCCGAAAAGCCGAAGTGT 61.259 57.895 0.00 0.00 44.57 3.55
6429 13312 1.082104 GCCGAAAAGCCGAAGTGTG 60.082 57.895 0.00 0.00 0.00 3.82
6430 13313 1.082104 CCGAAAAGCCGAAGTGTGC 60.082 57.895 0.00 0.00 0.00 4.57
6431 13314 1.082104 CGAAAAGCCGAAGTGTGCC 60.082 57.895 0.00 0.00 0.00 5.01
6432 13315 1.285950 GAAAAGCCGAAGTGTGCCC 59.714 57.895 0.00 0.00 0.00 5.36
6433 13316 2.142357 GAAAAGCCGAAGTGTGCCCC 62.142 60.000 0.00 0.00 0.00 5.80
6434 13317 2.920076 AAAAGCCGAAGTGTGCCCCA 62.920 55.000 0.00 0.00 0.00 4.96
6435 13318 2.920076 AAAGCCGAAGTGTGCCCCAA 62.920 55.000 0.00 0.00 0.00 4.12
6436 13319 3.670377 GCCGAAGTGTGCCCCAAC 61.670 66.667 0.00 0.00 0.00 3.77
6437 13320 2.113139 CCGAAGTGTGCCCCAACT 59.887 61.111 0.00 0.00 0.00 3.16
6438 13321 2.260869 CCGAAGTGTGCCCCAACTG 61.261 63.158 0.00 0.00 0.00 3.16
6439 13322 2.260869 CGAAGTGTGCCCCAACTGG 61.261 63.158 0.00 0.00 0.00 4.00
6449 13332 3.365535 CCAACTGGGCCGAAAAGG 58.634 61.111 0.00 0.00 44.97 3.11
6450 13333 1.228429 CCAACTGGGCCGAAAAGGA 60.228 57.895 0.00 0.00 45.00 3.36
6451 13334 1.244019 CCAACTGGGCCGAAAAGGAG 61.244 60.000 0.00 0.00 45.00 3.69
6452 13335 0.537371 CAACTGGGCCGAAAAGGAGT 60.537 55.000 0.00 0.00 45.00 3.85
6453 13336 0.185175 AACTGGGCCGAAAAGGAGTT 59.815 50.000 0.00 0.00 45.00 3.01
6454 13337 0.537371 ACTGGGCCGAAAAGGAGTTG 60.537 55.000 0.00 0.00 45.00 3.16
6455 13338 0.537371 CTGGGCCGAAAAGGAGTTGT 60.537 55.000 0.00 0.00 45.00 3.32
6456 13339 0.536460 TGGGCCGAAAAGGAGTTGTC 60.536 55.000 0.00 0.00 45.00 3.18
6457 13340 0.536460 GGGCCGAAAAGGAGTTGTCA 60.536 55.000 0.00 0.00 45.00 3.58
6458 13341 0.875059 GGCCGAAAAGGAGTTGTCAG 59.125 55.000 0.00 0.00 45.00 3.51
6459 13342 0.238553 GCCGAAAAGGAGTTGTCAGC 59.761 55.000 0.00 0.00 45.00 4.26
6460 13343 0.512952 CCGAAAAGGAGTTGTCAGCG 59.487 55.000 0.00 0.00 45.00 5.18
6461 13344 0.512952 CGAAAAGGAGTTGTCAGCGG 59.487 55.000 0.00 0.00 0.00 5.52
6462 13345 0.238553 GAAAAGGAGTTGTCAGCGGC 59.761 55.000 0.00 0.00 0.00 6.53
6463 13346 1.172812 AAAAGGAGTTGTCAGCGGCC 61.173 55.000 0.00 0.00 0.00 6.13
6464 13347 2.056906 AAAGGAGTTGTCAGCGGCCT 62.057 55.000 0.00 0.00 0.00 5.19
6465 13348 2.738213 AAGGAGTTGTCAGCGGCCTG 62.738 60.000 0.00 0.00 40.54 4.85
6466 13349 2.743928 GAGTTGTCAGCGGCCTGG 60.744 66.667 0.00 0.00 39.61 4.45
6467 13350 3.537206 GAGTTGTCAGCGGCCTGGT 62.537 63.158 0.00 0.00 39.61 4.00
6477 13360 2.266055 GGCCTGGTGACCGAAGAG 59.734 66.667 0.00 0.00 0.00 2.85
6489 13372 2.436824 GAAGAGGTGGGCTTCGGC 60.437 66.667 0.00 0.00 40.88 5.54
6499 13382 3.518003 GCTTCGGCCTACCTACGA 58.482 61.111 0.00 0.00 34.32 3.43
6500 13383 2.039509 GCTTCGGCCTACCTACGAT 58.960 57.895 0.00 0.00 36.43 3.73
6501 13384 0.039346 GCTTCGGCCTACCTACGATC 60.039 60.000 0.00 0.00 36.43 3.69
6502 13385 0.237761 CTTCGGCCTACCTACGATCG 59.762 60.000 14.88 14.88 36.43 3.69
6503 13386 0.179048 TTCGGCCTACCTACGATCGA 60.179 55.000 24.34 4.52 36.43 3.59
6504 13387 0.179048 TCGGCCTACCTACGATCGAA 60.179 55.000 24.34 0.48 0.00 3.71
6505 13388 0.237761 CGGCCTACCTACGATCGAAG 59.762 60.000 24.34 11.97 0.00 3.79
6506 13389 1.602311 GGCCTACCTACGATCGAAGA 58.398 55.000 24.34 5.52 45.75 2.87
6507 13390 1.536331 GGCCTACCTACGATCGAAGAG 59.464 57.143 24.34 14.91 43.63 2.85
6508 13391 1.069091 GCCTACCTACGATCGAAGAGC 60.069 57.143 24.34 10.87 43.63 4.09
6509 13392 1.536331 CCTACCTACGATCGAAGAGCC 59.464 57.143 24.34 0.00 41.58 4.70
6510 13393 1.536331 CTACCTACGATCGAAGAGCCC 59.464 57.143 24.34 0.00 41.58 5.19
6511 13394 1.283181 CCTACGATCGAAGAGCCCG 59.717 63.158 24.34 0.09 41.58 6.13
6512 13395 1.445716 CCTACGATCGAAGAGCCCGT 61.446 60.000 24.34 0.00 41.58 5.28
6513 13396 0.041135 CTACGATCGAAGAGCCCGTC 60.041 60.000 24.34 0.00 41.58 4.79
6514 13397 0.463295 TACGATCGAAGAGCCCGTCT 60.463 55.000 24.34 0.00 41.58 4.18
6516 13399 0.179134 CGATCGAAGAGCCCGTCTTT 60.179 55.000 10.26 0.00 46.21 2.52
6517 13400 1.281899 GATCGAAGAGCCCGTCTTTG 58.718 55.000 0.00 0.00 46.21 2.77
6518 13401 0.108138 ATCGAAGAGCCCGTCTTTGG 60.108 55.000 0.00 0.00 46.21 3.28
6519 13402 2.391389 CGAAGAGCCCGTCTTTGGC 61.391 63.158 0.00 0.00 46.21 4.52
6524 13407 2.437895 GCCCGTCTTTGGCCTACC 60.438 66.667 3.32 0.00 43.33 3.18
6535 13418 4.770874 GCCTACCAGCGGCCGAAA 62.771 66.667 33.48 7.28 41.73 3.46
6536 13419 2.046700 CCTACCAGCGGCCGAAAA 60.047 61.111 33.48 7.69 0.00 2.29
6537 13420 2.106683 CCTACCAGCGGCCGAAAAG 61.107 63.158 33.48 16.50 0.00 2.27
6538 13421 1.079405 CTACCAGCGGCCGAAAAGA 60.079 57.895 33.48 9.52 0.00 2.52
6539 13422 0.462047 CTACCAGCGGCCGAAAAGAT 60.462 55.000 33.48 10.96 0.00 2.40
6540 13423 0.461339 TACCAGCGGCCGAAAAGATC 60.461 55.000 33.48 9.31 0.00 2.75
6541 13424 1.450312 CCAGCGGCCGAAAAGATCT 60.450 57.895 33.48 11.96 0.00 2.75
6542 13425 1.026718 CCAGCGGCCGAAAAGATCTT 61.027 55.000 33.48 0.88 0.00 2.40
6543 13426 0.375106 CAGCGGCCGAAAAGATCTTC 59.625 55.000 33.48 6.65 0.00 2.87
6544 13427 1.084370 AGCGGCCGAAAAGATCTTCG 61.084 55.000 33.48 9.15 46.12 3.79
6551 13434 2.202566 CGAAAAGATCTTCGGCCTACC 58.797 52.381 8.78 0.00 43.51 3.18
6552 13435 2.562635 GAAAAGATCTTCGGCCTACCC 58.437 52.381 8.78 0.00 0.00 3.69
6561 13444 3.908081 GGCCTACCCGCGATCGAA 61.908 66.667 21.57 0.00 38.10 3.71
6562 13445 2.354773 GCCTACCCGCGATCGAAG 60.355 66.667 21.57 11.73 38.10 3.79
6563 13446 2.842256 GCCTACCCGCGATCGAAGA 61.842 63.158 21.57 0.00 45.75 2.87
6564 13447 1.283181 CCTACCCGCGATCGAAGAG 59.717 63.158 21.57 5.07 43.63 2.85
6565 13448 1.283181 CTACCCGCGATCGAAGAGG 59.717 63.158 21.57 14.83 43.63 3.69
6566 13449 1.445716 CTACCCGCGATCGAAGAGGT 61.446 60.000 21.57 19.63 43.63 3.85
6567 13450 1.442526 TACCCGCGATCGAAGAGGTC 61.443 60.000 21.57 0.00 43.63 3.85
6568 13451 2.026301 CCGCGATCGAAGAGGTCC 59.974 66.667 21.57 0.00 43.63 4.46
6569 13452 2.352457 CGCGATCGAAGAGGTCCG 60.352 66.667 21.57 6.18 43.63 4.79
6570 13453 2.026301 GCGATCGAAGAGGTCCGG 59.974 66.667 21.57 0.00 43.63 5.14
6571 13454 2.478890 GCGATCGAAGAGGTCCGGA 61.479 63.158 21.57 0.00 43.63 5.14
6572 13455 1.797211 GCGATCGAAGAGGTCCGGAT 61.797 60.000 21.57 0.00 43.63 4.18
6573 13456 1.520494 CGATCGAAGAGGTCCGGATA 58.480 55.000 10.26 0.00 43.63 2.59
6574 13457 1.878088 CGATCGAAGAGGTCCGGATAA 59.122 52.381 10.26 0.00 43.63 1.75
6575 13458 2.095668 CGATCGAAGAGGTCCGGATAAG 60.096 54.545 10.26 0.00 43.63 1.73
6576 13459 1.688772 TCGAAGAGGTCCGGATAAGG 58.311 55.000 7.81 0.00 0.00 2.69
6577 13460 0.032267 CGAAGAGGTCCGGATAAGGC 59.968 60.000 7.81 0.00 0.00 4.35
6578 13461 0.393448 GAAGAGGTCCGGATAAGGCC 59.607 60.000 7.81 3.05 0.00 5.19
6586 13469 2.967615 GGATAAGGCCGACGCAGC 60.968 66.667 0.00 0.00 36.38 5.25
6597 13480 2.048127 ACGCAGCCGTCTTCTTCC 60.048 61.111 0.00 0.00 46.39 3.46
6598 13481 2.262915 CGCAGCCGTCTTCTTCCT 59.737 61.111 0.00 0.00 0.00 3.36
6599 13482 1.807573 CGCAGCCGTCTTCTTCCTC 60.808 63.158 0.00 0.00 0.00 3.71
6600 13483 1.594310 GCAGCCGTCTTCTTCCTCT 59.406 57.895 0.00 0.00 0.00 3.69
6601 13484 0.739112 GCAGCCGTCTTCTTCCTCTG 60.739 60.000 0.00 0.00 0.00 3.35
6602 13485 0.108424 CAGCCGTCTTCTTCCTCTGG 60.108 60.000 0.00 0.00 0.00 3.86
6603 13486 1.448717 GCCGTCTTCTTCCTCTGGC 60.449 63.158 0.00 0.00 0.00 4.85
6604 13487 1.893919 GCCGTCTTCTTCCTCTGGCT 61.894 60.000 0.00 0.00 38.00 4.75
6605 13488 0.108424 CCGTCTTCTTCCTCTGGCTG 60.108 60.000 0.00 0.00 0.00 4.85
6606 13489 0.605589 CGTCTTCTTCCTCTGGCTGT 59.394 55.000 0.00 0.00 0.00 4.40
6607 13490 1.403514 CGTCTTCTTCCTCTGGCTGTC 60.404 57.143 0.00 0.00 0.00 3.51
6608 13491 1.066502 GTCTTCTTCCTCTGGCTGTCC 60.067 57.143 0.00 0.00 0.00 4.02
6609 13492 1.203237 TCTTCTTCCTCTGGCTGTCCT 60.203 52.381 0.00 0.00 0.00 3.85
6610 13493 2.043115 TCTTCTTCCTCTGGCTGTCCTA 59.957 50.000 0.00 0.00 0.00 2.94
6611 13494 2.856760 TCTTCCTCTGGCTGTCCTAT 57.143 50.000 0.00 0.00 0.00 2.57
6612 13495 2.672098 TCTTCCTCTGGCTGTCCTATC 58.328 52.381 0.00 0.00 0.00 2.08
6613 13496 2.246067 TCTTCCTCTGGCTGTCCTATCT 59.754 50.000 0.00 0.00 0.00 1.98
6614 13497 2.373335 TCCTCTGGCTGTCCTATCTC 57.627 55.000 0.00 0.00 0.00 2.75
6615 13498 1.133325 TCCTCTGGCTGTCCTATCTCC 60.133 57.143 0.00 0.00 0.00 3.71
6616 13499 1.412217 CCTCTGGCTGTCCTATCTCCA 60.412 57.143 0.00 0.00 0.00 3.86
6617 13500 1.686052 CTCTGGCTGTCCTATCTCCAC 59.314 57.143 0.00 0.00 0.00 4.02
6618 13501 0.755686 CTGGCTGTCCTATCTCCACC 59.244 60.000 0.00 0.00 0.00 4.61
6619 13502 0.691078 TGGCTGTCCTATCTCCACCC 60.691 60.000 0.00 0.00 0.00 4.61
6620 13503 1.411651 GGCTGTCCTATCTCCACCCC 61.412 65.000 0.00 0.00 0.00 4.95
6621 13504 1.749334 GCTGTCCTATCTCCACCCCG 61.749 65.000 0.00 0.00 0.00 5.73
6622 13505 1.749334 CTGTCCTATCTCCACCCCGC 61.749 65.000 0.00 0.00 0.00 6.13
6623 13506 2.520982 TCCTATCTCCACCCCGCG 60.521 66.667 0.00 0.00 0.00 6.46
6624 13507 4.301027 CCTATCTCCACCCCGCGC 62.301 72.222 0.00 0.00 0.00 6.86
6625 13508 4.301027 CTATCTCCACCCCGCGCC 62.301 72.222 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
285 295 2.917227 CCACCCGCCCTTTGCTTT 60.917 61.111 0.00 0.00 38.05 3.51
318 329 2.414840 ATTTCAGCCCGCGCGTTTTT 62.415 50.000 29.95 8.35 41.18 1.94
468 482 3.966543 CCTGCCCGACCAAACCCT 61.967 66.667 0.00 0.00 0.00 4.34
473 487 2.282180 GAAAGCCTGCCCGACCAA 60.282 61.111 0.00 0.00 0.00 3.67
558 573 5.163195 GGGTGGCAGGATCTTTATCTAAGAA 60.163 44.000 0.00 0.00 45.62 2.52
595 610 0.626916 TGGGGTTGGTATAGGGCAAC 59.373 55.000 0.00 0.00 0.00 4.17
721 751 0.252513 TCCCGGTGATGAAGAAGGGA 60.253 55.000 0.00 0.00 44.85 4.20
862 892 5.738118 ACCTCGTAAGTTAAGAGATCGAG 57.262 43.478 22.68 16.08 41.52 4.04
864 894 5.526846 AGGTACCTCGTAAGTTAAGAGATCG 59.473 44.000 22.68 11.54 36.57 3.69
902 932 7.829211 TCAATCCCGAAGATTTCTACTCAAATT 59.171 33.333 0.00 0.00 42.86 1.82
926 956 7.279981 GCACATACCTTCAAGTACAATATGTCA 59.720 37.037 0.00 0.00 31.18 3.58
945 975 5.073311 TCTCTTGGAAGTACTGCACATAC 57.927 43.478 2.51 0.00 0.00 2.39
996 1111 3.197549 ACCTGTTGTTGCCTGACATTTTT 59.802 39.130 0.00 0.00 0.00 1.94
997 1112 2.765699 ACCTGTTGTTGCCTGACATTTT 59.234 40.909 0.00 0.00 0.00 1.82
998 1113 2.362077 GACCTGTTGTTGCCTGACATTT 59.638 45.455 0.00 0.00 0.00 2.32
999 1114 1.956477 GACCTGTTGTTGCCTGACATT 59.044 47.619 0.00 0.00 0.00 2.71
1052 1168 4.081142 TGCAGCTAGCCAAGTCACTTATTA 60.081 41.667 12.13 0.00 44.83 0.98
1062 1178 1.747709 ATTCACTGCAGCTAGCCAAG 58.252 50.000 15.27 9.19 44.83 3.61
1099 1215 5.895636 ACGGTGCATATTTTGATCAAAGA 57.104 34.783 19.64 12.98 0.00 2.52
1100 1216 6.785191 AGTACGGTGCATATTTTGATCAAAG 58.215 36.000 19.64 10.33 0.00 2.77
1101 1217 6.751514 AGTACGGTGCATATTTTGATCAAA 57.248 33.333 16.91 16.91 0.00 2.69
1102 1218 6.751514 AAGTACGGTGCATATTTTGATCAA 57.248 33.333 3.38 3.38 0.00 2.57
1103 1219 6.819146 TGTAAGTACGGTGCATATTTTGATCA 59.181 34.615 0.00 0.00 0.00 2.92
1104 1220 7.241663 TGTAAGTACGGTGCATATTTTGATC 57.758 36.000 0.00 0.00 0.00 2.92
1105 1221 7.551262 TCTTGTAAGTACGGTGCATATTTTGAT 59.449 33.333 0.00 0.00 0.00 2.57
1106 1222 6.874664 TCTTGTAAGTACGGTGCATATTTTGA 59.125 34.615 0.00 0.00 0.00 2.69
1107 1223 7.064134 TCTCTTGTAAGTACGGTGCATATTTTG 59.936 37.037 0.00 0.00 0.00 2.44
1108 1224 7.101054 TCTCTTGTAAGTACGGTGCATATTTT 58.899 34.615 0.00 0.00 0.00 1.82
1109 1225 6.636705 TCTCTTGTAAGTACGGTGCATATTT 58.363 36.000 0.00 0.00 0.00 1.40
1110 1226 6.216801 TCTCTTGTAAGTACGGTGCATATT 57.783 37.500 0.00 0.00 0.00 1.28
1111 1227 5.847111 TCTCTTGTAAGTACGGTGCATAT 57.153 39.130 0.00 0.00 0.00 1.78
1112 1228 5.416639 TCTTCTCTTGTAAGTACGGTGCATA 59.583 40.000 0.00 0.00 0.00 3.14
1113 1229 4.219944 TCTTCTCTTGTAAGTACGGTGCAT 59.780 41.667 0.00 0.00 0.00 3.96
1114 1230 3.570975 TCTTCTCTTGTAAGTACGGTGCA 59.429 43.478 0.00 0.00 0.00 4.57
1115 1231 4.170292 TCTTCTCTTGTAAGTACGGTGC 57.830 45.455 0.00 0.00 0.00 5.01
1116 1232 5.950883 TCATCTTCTCTTGTAAGTACGGTG 58.049 41.667 0.00 0.00 0.00 4.94
1117 1233 5.944599 TCTCATCTTCTCTTGTAAGTACGGT 59.055 40.000 0.00 0.00 0.00 4.83
1118 1234 6.438259 TCTCATCTTCTCTTGTAAGTACGG 57.562 41.667 0.00 0.00 0.00 4.02
1176 1292 2.869233 TTTTGCTGTTGACCTCTTGC 57.131 45.000 0.00 0.00 0.00 4.01
1178 1294 4.210331 ACTGATTTTGCTGTTGACCTCTT 58.790 39.130 0.00 0.00 0.00 2.85
1219 1337 9.817809 CAGCTTTGATACTCCTTTTATACAGTA 57.182 33.333 0.00 0.00 0.00 2.74
1220 1338 7.281100 GCAGCTTTGATACTCCTTTTATACAGT 59.719 37.037 0.00 0.00 0.00 3.55
1221 1339 7.497249 AGCAGCTTTGATACTCCTTTTATACAG 59.503 37.037 0.00 0.00 0.00 2.74
1243 1361 1.220206 CCAGCAGTGACCCTAGCAG 59.780 63.158 0.00 0.00 0.00 4.24
1276 1394 2.219875 AGGCCTGCAGCAGTGTAGT 61.220 57.895 21.26 0.00 46.50 2.73
1349 1468 3.826157 TGCCAAGACAGAAATTACCCAAG 59.174 43.478 0.00 0.00 0.00 3.61
1355 1474 5.418840 GGATCCTTTGCCAAGACAGAAATTA 59.581 40.000 3.84 0.00 30.57 1.40
1363 1482 1.373570 CTCGGATCCTTTGCCAAGAC 58.626 55.000 10.75 0.00 30.57 3.01
1380 2522 3.244561 TGCAAGTATATAAGGGGCTGCTC 60.245 47.826 0.00 0.00 0.00 4.26
1408 2550 8.506168 TTGCTAGAGGTAATTAAGGTCATTTG 57.494 34.615 0.00 0.00 0.00 2.32
1417 2559 8.318412 TGACAGACAATTGCTAGAGGTAATTAA 58.682 33.333 5.05 0.00 37.98 1.40
1418 2560 7.847096 TGACAGACAATTGCTAGAGGTAATTA 58.153 34.615 5.05 0.00 37.98 1.40
1419 2561 6.711277 TGACAGACAATTGCTAGAGGTAATT 58.289 36.000 5.05 0.00 40.05 1.40
1420 2562 6.299805 TGACAGACAATTGCTAGAGGTAAT 57.700 37.500 5.05 0.00 0.00 1.89
1458 2600 7.094508 TCAACTAACTTGAACAGAAAATGCA 57.905 32.000 0.00 0.00 35.84 3.96
1473 2615 3.740115 ACATCAAACGCCTCAACTAACT 58.260 40.909 0.00 0.00 0.00 2.24
1544 2686 9.657419 ATTTTACATGAAAATCCCAAATCTGAC 57.343 29.630 0.00 0.00 42.95 3.51
1689 2831 0.601576 TTCTTCGCTTGCGCTTGGTA 60.602 50.000 9.73 0.00 0.00 3.25
1737 2879 5.821204 AGTACTGTTTTGCTAGCACTTTTG 58.179 37.500 19.17 10.54 0.00 2.44
1952 3095 5.924356 TCAATCTGTTTGGTGAGTTCACTA 58.076 37.500 11.67 3.27 45.73 2.74
1980 3123 4.442192 GGAGACAACACTCTCTGACAGTTT 60.442 45.833 1.59 0.00 37.44 2.66
2229 3373 6.587273 AGAAAAGTAGAGAGAAGTTTGCAGT 58.413 36.000 0.00 0.00 0.00 4.40
2234 3378 7.057264 AGGCAAAGAAAAGTAGAGAGAAGTTT 58.943 34.615 0.00 0.00 0.00 2.66
2267 3411 8.964533 AGAATAGGTGAACAGGATGATACTAT 57.035 34.615 0.00 0.00 39.69 2.12
2268 3412 8.642432 CAAGAATAGGTGAACAGGATGATACTA 58.358 37.037 0.00 0.00 39.69 1.82
2269 3413 7.419518 CCAAGAATAGGTGAACAGGATGATACT 60.420 40.741 0.00 0.00 39.69 2.12
2270 3414 6.708054 CCAAGAATAGGTGAACAGGATGATAC 59.292 42.308 0.00 0.00 39.69 2.24
2398 3542 1.282570 CTGAAAACCACGTGCGCAT 59.717 52.632 15.91 0.00 0.00 4.73
2399 3543 2.712539 CTGAAAACCACGTGCGCA 59.287 55.556 5.66 5.66 0.00 6.09
2442 3586 2.589798 ATTCGGCTCAAATTGCATGG 57.410 45.000 0.00 0.00 0.00 3.66
2458 3602 6.097981 ACCCCACAGCTACTAACTTACTATTC 59.902 42.308 0.00 0.00 0.00 1.75
2520 3664 1.155889 TGCACTGCCAATTACTGTCG 58.844 50.000 0.00 0.00 0.00 4.35
2542 3686 3.431346 GCATAAGCTCACAGACTCCATCA 60.431 47.826 0.00 0.00 37.91 3.07
2695 3840 9.558396 AATGAAGAAATTTGCACAGGAAAAATA 57.442 25.926 0.00 0.00 0.00 1.40
2722 3867 6.259550 AGCCTAGCACAAAAATAAAGTGAG 57.740 37.500 0.00 0.00 35.33 3.51
2809 3955 5.942872 CACTGGTGTGAACATAATCCTTTC 58.057 41.667 0.00 0.00 46.55 2.62
3028 4234 6.001460 AGATGGAAATGTACCGAAGAAAACA 58.999 36.000 0.00 0.00 0.00 2.83
3065 4271 5.004061 CACAAAATGCAAAGCGACTATGATG 59.996 40.000 0.00 0.00 0.00 3.07
3066 4272 5.097529 CACAAAATGCAAAGCGACTATGAT 58.902 37.500 0.00 0.00 0.00 2.45
3074 4280 2.219216 CAGGTTCACAAAATGCAAAGCG 59.781 45.455 0.00 0.00 0.00 4.68
3239 4455 5.277974 GCAAACAACACAGCAATCTCTAGAA 60.278 40.000 0.00 0.00 0.00 2.10
3240 4456 4.214119 GCAAACAACACAGCAATCTCTAGA 59.786 41.667 0.00 0.00 0.00 2.43
3243 4459 2.954318 AGCAAACAACACAGCAATCTCT 59.046 40.909 0.00 0.00 0.00 3.10
3465 4682 1.401761 TTCGGCATGCCAGCATTATT 58.598 45.000 34.93 0.00 33.90 1.40
3467 4684 0.740149 CTTTCGGCATGCCAGCATTA 59.260 50.000 34.93 13.22 33.90 1.90
3540 4757 2.010145 TCAGCACTTGATACGCCTTC 57.990 50.000 0.00 0.00 0.00 3.46
3868 8716 9.932699 CTTCAAAAGAGTTAATCTCATGCATAG 57.067 33.333 0.00 0.00 44.98 2.23
4043 8894 4.717233 TTCCTGCGCACATCATAATTTT 57.283 36.364 5.66 0.00 0.00 1.82
4057 8908 3.420839 AAACACTTTGACTTTCCTGCG 57.579 42.857 0.00 0.00 0.00 5.18
4107 8958 4.491676 CGAAGTAAGAATTCTCACGGGAA 58.508 43.478 8.78 0.00 0.00 3.97
4371 9222 1.919600 GCCTCCTCAATCCCACTGCT 61.920 60.000 0.00 0.00 0.00 4.24
4434 9285 6.094048 CCATTAGTTTCCGATGTTCAATGAGT 59.906 38.462 0.00 0.00 0.00 3.41
4687 9619 9.067986 CCTGGATAAAGAAAAACTTAAGTGACT 57.932 33.333 9.34 3.84 37.93 3.41
4696 9630 3.089284 CCGGCCTGGATAAAGAAAAACT 58.911 45.455 7.77 0.00 42.00 2.66
4821 9758 4.152402 CCGTTCTTCATTGAAACGTCTCAT 59.848 41.667 17.64 0.00 0.00 2.90
4833 9770 2.799126 TGGGCATACCGTTCTTCATT 57.201 45.000 0.00 0.00 44.64 2.57
4932 9871 3.175929 GGACGTTGTTGGAACACAAAAG 58.824 45.455 0.00 0.00 41.58 2.27
4956 9897 9.772973 GGTAAGGAGGTGAAAATTTTAAACATT 57.227 29.630 6.09 0.90 0.00 2.71
4957 9898 8.929487 TGGTAAGGAGGTGAAAATTTTAAACAT 58.071 29.630 6.09 4.81 0.00 2.71
4959 9900 9.419297 GATGGTAAGGAGGTGAAAATTTTAAAC 57.581 33.333 2.75 0.00 0.00 2.01
4961 9902 7.179516 GGGATGGTAAGGAGGTGAAAATTTTAA 59.820 37.037 2.75 0.00 0.00 1.52
4962 9903 6.666113 GGGATGGTAAGGAGGTGAAAATTTTA 59.334 38.462 2.75 0.00 0.00 1.52
4963 9904 5.483937 GGGATGGTAAGGAGGTGAAAATTTT 59.516 40.000 2.28 2.28 0.00 1.82
5004 9998 5.291971 CCCTTTTTCATGTCCAAACAAGAG 58.708 41.667 0.00 0.00 39.30 2.85
5055 10049 3.188880 TGGAGCCCAAATGAGGAAAAT 57.811 42.857 0.00 0.00 0.00 1.82
5209 10260 2.649816 AGGTGAATCAGTAAGGGCCTTT 59.350 45.455 26.29 5.08 0.00 3.11
5214 10265 7.848128 TCTACTTTAAGGTGAATCAGTAAGGG 58.152 38.462 0.00 0.00 0.00 3.95
5225 10276 5.267587 GGTCCCTACTCTACTTTAAGGTGA 58.732 45.833 0.00 0.00 0.00 4.02
5351 12224 8.521170 AGGCCTTATTAGAACCAACTTTTATC 57.479 34.615 0.00 0.00 0.00 1.75
5352 12225 9.404848 GTAGGCCTTATTAGAACCAACTTTTAT 57.595 33.333 12.58 0.00 0.00 1.40
5400 12274 0.387878 GTCTCTGTCTCAGCACCACG 60.388 60.000 0.00 0.00 0.00 4.94
5500 12374 0.550914 TGTCTTGGTTCAGGCCAACT 59.449 50.000 5.01 0.00 42.98 3.16
5548 12422 2.888414 CTGGGAACAAACCAAACGGTAT 59.112 45.455 0.00 0.00 42.06 2.73
5598 12472 7.035004 GCCAAGCAAACTTTGAATATACATCA 58.965 34.615 5.65 0.00 32.29 3.07
5602 12476 7.832503 AATGCCAAGCAAACTTTGAATATAC 57.167 32.000 5.65 0.00 43.62 1.47
5671 12548 6.500684 ACATTAGTAACAAGCAGTTCCATG 57.499 37.500 0.00 0.00 41.64 3.66
5708 12585 2.420058 TCGCTCATGAGTAGTCTGGA 57.580 50.000 23.38 7.50 0.00 3.86
5709 12586 4.142491 GGATATCGCTCATGAGTAGTCTGG 60.142 50.000 23.38 5.47 0.00 3.86
5710 12587 4.699735 AGGATATCGCTCATGAGTAGTCTG 59.300 45.833 23.38 7.55 0.00 3.51
5719 12596 4.375272 ACTGAACAAGGATATCGCTCATG 58.625 43.478 0.00 0.00 0.00 3.07
5728 12605 9.349713 AGAAATAAACACAACTGAACAAGGATA 57.650 29.630 0.00 0.00 0.00 2.59
5754 12633 7.743116 TCTGAAATACAAGGGAGTTGGTATA 57.257 36.000 0.00 0.00 40.90 1.47
5755 12634 6.636454 TCTGAAATACAAGGGAGTTGGTAT 57.364 37.500 0.00 0.00 40.90 2.73
5763 12642 8.275187 ACCATGTATATCTGAAATACAAGGGA 57.725 34.615 17.12 0.00 46.03 4.20
5965 12844 5.045869 AGGAGTTTCCCGTGAATAATGAGAA 60.046 40.000 0.00 0.00 37.19 2.87
5974 12853 2.436542 TCTTGAAGGAGTTTCCCGTGAA 59.563 45.455 0.00 0.00 37.19 3.18
5980 12859 3.500299 GCAGAGTTCTTGAAGGAGTTTCC 59.500 47.826 0.00 0.00 34.77 3.13
6029 12908 0.997932 GCGAGCTGTCAAGACATCAG 59.002 55.000 3.01 0.12 41.01 2.90
6096 12975 1.661178 CGTCATGTGCACAGCAGTTTC 60.661 52.381 25.84 9.71 40.08 2.78
6132 13011 2.800544 CCGCTATTGGACTATCGTTTGG 59.199 50.000 0.00 0.00 0.00 3.28
6140 13019 7.431249 CAAACTTCTATACCGCTATTGGACTA 58.569 38.462 0.00 0.00 0.00 2.59
6170 13049 1.742880 CCACCACTGATGCAGTCGG 60.743 63.158 11.74 11.74 43.43 4.79
6172 13051 2.042831 GGCCACCACTGATGCAGTC 61.043 63.158 0.00 0.00 43.43 3.51
6183 13062 4.927782 GACACGCTGTGGCCACCA 62.928 66.667 32.62 19.12 35.14 4.17
6186 13065 4.539083 AACGACACGCTGTGGCCA 62.539 61.111 0.00 0.00 38.55 5.36
6187 13066 3.712881 GAACGACACGCTGTGGCC 61.713 66.667 12.18 0.00 38.55 5.36
6188 13067 4.059459 CGAACGACACGCTGTGGC 62.059 66.667 12.18 8.67 38.37 5.01
6189 13068 2.736343 TACCGAACGACACGCTGTGG 62.736 60.000 12.18 5.47 37.94 4.17
6190 13069 0.935831 TTACCGAACGACACGCTGTG 60.936 55.000 7.07 7.07 39.75 3.66
6191 13070 0.038892 ATTACCGAACGACACGCTGT 60.039 50.000 0.00 0.00 0.00 4.40
6192 13071 0.638746 GATTACCGAACGACACGCTG 59.361 55.000 0.00 0.00 0.00 5.18
6193 13072 0.241749 TGATTACCGAACGACACGCT 59.758 50.000 0.00 0.00 0.00 5.07
6194 13073 0.638746 CTGATTACCGAACGACACGC 59.361 55.000 0.00 0.00 0.00 5.34
6195 13074 0.638746 GCTGATTACCGAACGACACG 59.361 55.000 0.00 0.00 0.00 4.49
6206 13085 4.614946 ACGTTATAACTCCGGCTGATTAC 58.385 43.478 13.56 0.00 0.00 1.89
6212 13091 1.800286 GCGAACGTTATAACTCCGGCT 60.800 52.381 13.56 0.00 0.00 5.52
6265 13147 4.593206 AGGGCGTATAGATTCCAGATTTGA 59.407 41.667 0.00 0.00 0.00 2.69
6271 13153 2.351835 CGTCAGGGCGTATAGATTCCAG 60.352 54.545 0.00 0.00 0.00 3.86
6273 13155 1.669211 GCGTCAGGGCGTATAGATTCC 60.669 57.143 0.00 0.00 0.00 3.01
6291 13173 5.120053 GGGTGATATTTTTGGTTTTTCTGCG 59.880 40.000 0.00 0.00 0.00 5.18
6301 13183 1.064952 GCCGTCGGGTGATATTTTTGG 59.935 52.381 14.38 0.00 34.97 3.28
6339 13222 2.202676 CGCAGACCGAAGAGCCTC 60.203 66.667 0.00 0.00 40.02 4.70
6340 13223 3.764466 CCGCAGACCGAAGAGCCT 61.764 66.667 0.00 0.00 40.02 4.58
6345 13228 2.027625 GGACAACCGCAGACCGAAG 61.028 63.158 0.00 0.00 40.02 3.79
6361 13244 4.208426 TGAAGAGCCCACTTCGGA 57.792 55.556 0.00 0.00 46.21 4.55
6411 13294 1.082104 CACACTTCGGCTTTTCGGC 60.082 57.895 0.00 0.00 0.00 5.54
6420 13303 2.113139 AGTTGGGGCACACTTCGG 59.887 61.111 0.00 0.00 0.00 4.30
6421 13304 2.260869 CCAGTTGGGGCACACTTCG 61.261 63.158 0.00 0.00 0.00 3.79
6422 13305 3.763671 CCAGTTGGGGCACACTTC 58.236 61.111 0.00 0.00 0.00 3.01
6432 13315 1.228429 TCCTTTTCGGCCCAGTTGG 60.228 57.895 0.00 0.00 37.09 3.77
6433 13316 0.537371 ACTCCTTTTCGGCCCAGTTG 60.537 55.000 0.00 0.00 0.00 3.16
6434 13317 0.185175 AACTCCTTTTCGGCCCAGTT 59.815 50.000 0.00 0.00 0.00 3.16
6435 13318 0.537371 CAACTCCTTTTCGGCCCAGT 60.537 55.000 0.00 0.00 0.00 4.00
6436 13319 0.537371 ACAACTCCTTTTCGGCCCAG 60.537 55.000 0.00 0.00 0.00 4.45
6437 13320 0.536460 GACAACTCCTTTTCGGCCCA 60.536 55.000 0.00 0.00 0.00 5.36
6438 13321 0.536460 TGACAACTCCTTTTCGGCCC 60.536 55.000 0.00 0.00 0.00 5.80
6439 13322 0.875059 CTGACAACTCCTTTTCGGCC 59.125 55.000 0.00 0.00 0.00 6.13
6440 13323 0.238553 GCTGACAACTCCTTTTCGGC 59.761 55.000 0.00 0.00 33.40 5.54
6441 13324 0.512952 CGCTGACAACTCCTTTTCGG 59.487 55.000 0.00 0.00 0.00 4.30
6442 13325 0.512952 CCGCTGACAACTCCTTTTCG 59.487 55.000 0.00 0.00 0.00 3.46
6443 13326 0.238553 GCCGCTGACAACTCCTTTTC 59.761 55.000 0.00 0.00 0.00 2.29
6444 13327 1.172812 GGCCGCTGACAACTCCTTTT 61.173 55.000 0.00 0.00 0.00 2.27
6445 13328 1.600916 GGCCGCTGACAACTCCTTT 60.601 57.895 0.00 0.00 0.00 3.11
6446 13329 2.032681 GGCCGCTGACAACTCCTT 59.967 61.111 0.00 0.00 0.00 3.36
6447 13330 2.925170 AGGCCGCTGACAACTCCT 60.925 61.111 0.00 0.00 0.00 3.69
6448 13331 2.743928 CAGGCCGCTGACAACTCC 60.744 66.667 0.00 0.00 0.00 3.85
6449 13332 2.743928 CCAGGCCGCTGACAACTC 60.744 66.667 0.00 0.00 0.00 3.01
6450 13333 3.560251 ACCAGGCCGCTGACAACT 61.560 61.111 0.00 0.00 0.00 3.16
6451 13334 3.357079 CACCAGGCCGCTGACAAC 61.357 66.667 0.00 0.00 0.00 3.32
6452 13335 3.555324 TCACCAGGCCGCTGACAA 61.555 61.111 0.00 0.00 0.00 3.18
6453 13336 4.314440 GTCACCAGGCCGCTGACA 62.314 66.667 19.78 0.00 35.39 3.58
6460 13343 2.266055 CTCTTCGGTCACCAGGCC 59.734 66.667 0.00 0.00 0.00 5.19
6461 13344 2.266055 CCTCTTCGGTCACCAGGC 59.734 66.667 0.00 0.00 0.00 4.85
6462 13345 1.293498 CACCTCTTCGGTCACCAGG 59.707 63.158 0.00 0.00 44.93 4.45
6463 13346 1.293498 CCACCTCTTCGGTCACCAG 59.707 63.158 0.00 0.00 44.93 4.00
6464 13347 2.214216 CCCACCTCTTCGGTCACCA 61.214 63.158 0.00 0.00 44.93 4.17
6465 13348 2.663196 CCCACCTCTTCGGTCACC 59.337 66.667 0.00 0.00 44.93 4.02
6466 13349 2.047179 GCCCACCTCTTCGGTCAC 60.047 66.667 0.00 0.00 44.93 3.67
6467 13350 1.827399 GAAGCCCACCTCTTCGGTCA 61.827 60.000 0.00 0.00 44.93 4.02
6468 13351 1.079057 GAAGCCCACCTCTTCGGTC 60.079 63.158 0.00 0.00 44.93 4.79
6472 13355 2.436824 GCCGAAGCCCACCTCTTC 60.437 66.667 0.00 0.00 37.25 2.87
6482 13365 0.039346 GATCGTAGGTAGGCCGAAGC 60.039 60.000 0.00 0.00 40.50 3.86
6483 13366 0.237761 CGATCGTAGGTAGGCCGAAG 59.762 60.000 7.03 0.00 40.50 3.79
6484 13367 0.179048 TCGATCGTAGGTAGGCCGAA 60.179 55.000 15.94 0.00 40.50 4.30
6485 13368 0.179048 TTCGATCGTAGGTAGGCCGA 60.179 55.000 15.94 0.00 40.50 5.54
6486 13369 0.237761 CTTCGATCGTAGGTAGGCCG 59.762 60.000 15.94 0.00 40.50 6.13
6487 13370 1.536331 CTCTTCGATCGTAGGTAGGCC 59.464 57.143 19.83 0.00 0.00 5.19
6488 13371 1.069091 GCTCTTCGATCGTAGGTAGGC 60.069 57.143 19.83 14.86 0.00 3.93
6489 13372 1.536331 GGCTCTTCGATCGTAGGTAGG 59.464 57.143 19.83 10.07 0.00 3.18
6490 13373 1.536331 GGGCTCTTCGATCGTAGGTAG 59.464 57.143 19.83 12.63 0.00 3.18
6491 13374 1.602311 GGGCTCTTCGATCGTAGGTA 58.398 55.000 19.83 2.82 0.00 3.08
6492 13375 1.445716 CGGGCTCTTCGATCGTAGGT 61.446 60.000 19.83 0.00 0.00 3.08
6493 13376 1.283181 CGGGCTCTTCGATCGTAGG 59.717 63.158 19.83 12.36 0.00 3.18
6494 13377 0.041135 GACGGGCTCTTCGATCGTAG 60.041 60.000 15.94 15.38 34.06 3.51
6495 13378 0.463295 AGACGGGCTCTTCGATCGTA 60.463 55.000 15.94 4.34 34.06 3.43
6496 13379 1.313812 AAGACGGGCTCTTCGATCGT 61.314 55.000 15.94 0.00 33.53 3.73
6497 13380 0.179134 AAAGACGGGCTCTTCGATCG 60.179 55.000 9.36 9.36 38.37 3.69
6498 13381 1.281899 CAAAGACGGGCTCTTCGATC 58.718 55.000 0.00 0.00 38.37 3.69
6499 13382 0.108138 CCAAAGACGGGCTCTTCGAT 60.108 55.000 0.00 0.00 38.37 3.59
6500 13383 1.292223 CCAAAGACGGGCTCTTCGA 59.708 57.895 0.00 0.00 38.37 3.71
6501 13384 3.876300 CCAAAGACGGGCTCTTCG 58.124 61.111 0.00 0.00 38.37 3.79
6508 13391 1.078426 CTGGTAGGCCAAAGACGGG 60.078 63.158 5.01 0.00 45.51 5.28
6509 13392 1.745489 GCTGGTAGGCCAAAGACGG 60.745 63.158 5.01 0.00 45.51 4.79
6510 13393 2.100631 CGCTGGTAGGCCAAAGACG 61.101 63.158 5.01 0.00 45.51 4.18
6511 13394 1.745489 CCGCTGGTAGGCCAAAGAC 60.745 63.158 5.01 0.00 45.51 3.01
6512 13395 2.668632 CCGCTGGTAGGCCAAAGA 59.331 61.111 5.01 0.00 45.51 2.52
6519 13402 2.046700 TTTTCGGCCGCTGGTAGG 60.047 61.111 23.51 0.00 0.00 3.18
6520 13403 0.462047 ATCTTTTCGGCCGCTGGTAG 60.462 55.000 23.51 12.88 0.00 3.18
6521 13404 0.461339 GATCTTTTCGGCCGCTGGTA 60.461 55.000 23.51 5.97 0.00 3.25
6522 13405 1.745489 GATCTTTTCGGCCGCTGGT 60.745 57.895 23.51 6.09 0.00 4.00
6523 13406 1.026718 AAGATCTTTTCGGCCGCTGG 61.027 55.000 23.51 10.57 0.00 4.85
6524 13407 0.375106 GAAGATCTTTTCGGCCGCTG 59.625 55.000 23.51 10.23 0.00 5.18
6525 13408 1.084370 CGAAGATCTTTTCGGCCGCT 61.084 55.000 23.51 6.85 44.56 5.52
6526 13409 1.348594 CGAAGATCTTTTCGGCCGC 59.651 57.895 23.51 4.02 44.56 6.53
6532 13415 2.562635 GGGTAGGCCGAAGATCTTTTC 58.437 52.381 9.87 0.00 34.97 2.29
6533 13416 1.134491 CGGGTAGGCCGAAGATCTTTT 60.134 52.381 9.87 0.00 34.97 2.27
6534 13417 0.464452 CGGGTAGGCCGAAGATCTTT 59.536 55.000 9.87 0.00 34.97 2.52
6535 13418 2.029307 GCGGGTAGGCCGAAGATCTT 62.029 60.000 7.95 7.95 34.97 2.40
6536 13419 2.499827 GCGGGTAGGCCGAAGATCT 61.500 63.158 0.00 0.00 34.97 2.75
6537 13420 2.029221 GCGGGTAGGCCGAAGATC 59.971 66.667 0.00 0.00 34.97 2.75
6538 13421 3.912907 CGCGGGTAGGCCGAAGAT 61.913 66.667 0.00 0.00 34.97 2.40
6540 13423 3.843117 GATCGCGGGTAGGCCGAAG 62.843 68.421 6.13 0.00 34.97 3.79
6541 13424 3.908081 GATCGCGGGTAGGCCGAA 61.908 66.667 6.13 0.00 34.97 4.30
6544 13427 3.843117 CTTCGATCGCGGGTAGGCC 62.843 68.421 11.09 0.00 38.28 5.19
6545 13428 2.354773 CTTCGATCGCGGGTAGGC 60.355 66.667 11.09 0.00 38.28 3.93
6546 13429 1.283181 CTCTTCGATCGCGGGTAGG 59.717 63.158 11.09 0.00 38.28 3.18
6547 13430 1.283181 CCTCTTCGATCGCGGGTAG 59.717 63.158 11.09 3.22 38.28 3.18
6548 13431 1.442526 GACCTCTTCGATCGCGGGTA 61.443 60.000 11.09 0.00 38.28 3.69
6549 13432 2.754658 ACCTCTTCGATCGCGGGT 60.755 61.111 11.09 12.13 38.28 5.28
6550 13433 2.026301 GACCTCTTCGATCGCGGG 59.974 66.667 11.09 11.50 38.28 6.13
6551 13434 2.026301 GGACCTCTTCGATCGCGG 59.974 66.667 11.09 10.32 38.28 6.46
6552 13435 2.352457 CGGACCTCTTCGATCGCG 60.352 66.667 11.09 0.00 39.35 5.87
6553 13436 1.797211 ATCCGGACCTCTTCGATCGC 61.797 60.000 6.12 0.00 0.00 4.58
6554 13437 1.520494 TATCCGGACCTCTTCGATCG 58.480 55.000 6.12 9.36 0.00 3.69
6555 13438 2.229302 CCTTATCCGGACCTCTTCGATC 59.771 54.545 6.12 0.00 0.00 3.69
6556 13439 2.240279 CCTTATCCGGACCTCTTCGAT 58.760 52.381 6.12 0.00 0.00 3.59
6557 13440 1.688772 CCTTATCCGGACCTCTTCGA 58.311 55.000 6.12 0.00 0.00 3.71
6558 13441 0.032267 GCCTTATCCGGACCTCTTCG 59.968 60.000 6.12 0.00 0.00 3.79
6559 13442 0.393448 GGCCTTATCCGGACCTCTTC 59.607 60.000 6.12 0.00 0.00 2.87
6560 13443 1.400530 CGGCCTTATCCGGACCTCTT 61.401 60.000 6.12 0.00 45.38 2.85
6561 13444 1.833049 CGGCCTTATCCGGACCTCT 60.833 63.158 6.12 0.00 45.38 3.69
6562 13445 2.735237 CGGCCTTATCCGGACCTC 59.265 66.667 6.12 0.00 45.38 3.85
6569 13452 2.967615 GCTGCGTCGGCCTTATCC 60.968 66.667 0.00 0.00 38.85 2.59
6577 13460 3.916392 AAGAAGACGGCTGCGTCGG 62.916 63.158 15.24 0.00 43.02 4.79
6578 13461 2.430921 AAGAAGACGGCTGCGTCG 60.431 61.111 15.24 7.65 43.02 5.12
6579 13462 2.095252 GGAAGAAGACGGCTGCGTC 61.095 63.158 3.08 3.08 39.01 5.19
6580 13463 2.048127 GGAAGAAGACGGCTGCGT 60.048 61.111 0.00 0.00 0.00 5.24
6581 13464 1.807573 GAGGAAGAAGACGGCTGCG 60.808 63.158 0.00 0.00 0.00 5.18
6582 13465 0.739112 CAGAGGAAGAAGACGGCTGC 60.739 60.000 0.00 0.00 0.00 5.25
6583 13466 0.108424 CCAGAGGAAGAAGACGGCTG 60.108 60.000 0.00 0.00 0.00 4.85
6584 13467 1.893919 GCCAGAGGAAGAAGACGGCT 61.894 60.000 0.00 0.00 35.17 5.52
6585 13468 1.448717 GCCAGAGGAAGAAGACGGC 60.449 63.158 0.00 0.00 0.00 5.68
6586 13469 0.108424 CAGCCAGAGGAAGAAGACGG 60.108 60.000 0.00 0.00 0.00 4.79
6587 13470 0.605589 ACAGCCAGAGGAAGAAGACG 59.394 55.000 0.00 0.00 0.00 4.18
6588 13471 1.066502 GGACAGCCAGAGGAAGAAGAC 60.067 57.143 0.00 0.00 0.00 3.01
6589 13472 1.203237 AGGACAGCCAGAGGAAGAAGA 60.203 52.381 0.00 0.00 36.29 2.87
6590 13473 1.274712 AGGACAGCCAGAGGAAGAAG 58.725 55.000 0.00 0.00 36.29 2.85
6591 13474 2.623418 TAGGACAGCCAGAGGAAGAA 57.377 50.000 0.00 0.00 36.29 2.52
6592 13475 2.246067 AGATAGGACAGCCAGAGGAAGA 59.754 50.000 0.00 0.00 36.29 2.87
6593 13476 2.627699 GAGATAGGACAGCCAGAGGAAG 59.372 54.545 0.00 0.00 36.29 3.46
6594 13477 2.672098 GAGATAGGACAGCCAGAGGAA 58.328 52.381 0.00 0.00 36.29 3.36
6595 13478 1.133325 GGAGATAGGACAGCCAGAGGA 60.133 57.143 0.00 0.00 36.29 3.71
6596 13479 1.337118 GGAGATAGGACAGCCAGAGG 58.663 60.000 0.00 0.00 36.29 3.69
6597 13480 1.686052 GTGGAGATAGGACAGCCAGAG 59.314 57.143 0.00 0.00 36.29 3.35
6598 13481 1.689575 GGTGGAGATAGGACAGCCAGA 60.690 57.143 0.00 0.00 36.29 3.86
6599 13482 0.755686 GGTGGAGATAGGACAGCCAG 59.244 60.000 0.00 0.00 36.29 4.85
6600 13483 2.916355 GGTGGAGATAGGACAGCCA 58.084 57.895 0.00 0.00 36.29 4.75
6601 13484 2.137692 GGGTGGAGATAGGACAGCC 58.862 63.158 0.00 0.00 44.31 4.85
6602 13485 1.749334 CGGGGTGGAGATAGGACAGC 61.749 65.000 0.00 0.00 0.00 4.40
6603 13486 1.749334 GCGGGGTGGAGATAGGACAG 61.749 65.000 0.00 0.00 0.00 3.51
6604 13487 1.760875 GCGGGGTGGAGATAGGACA 60.761 63.158 0.00 0.00 0.00 4.02
6605 13488 2.857744 CGCGGGGTGGAGATAGGAC 61.858 68.421 0.00 0.00 0.00 3.85
6606 13489 2.520982 CGCGGGGTGGAGATAGGA 60.521 66.667 0.00 0.00 0.00 2.94
6607 13490 4.301027 GCGCGGGGTGGAGATAGG 62.301 72.222 8.83 0.00 0.00 2.57
6608 13491 4.301027 GGCGCGGGGTGGAGATAG 62.301 72.222 8.83 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.