Multiple sequence alignment - TraesCS4B01G337800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G337800 chr4B 100.000 2242 0 0 1907 4148 630043771 630041530 0.000000e+00 4141.0
1 TraesCS4B01G337800 chr4B 100.000 1615 0 0 1 1615 630045677 630044063 0.000000e+00 2983.0
2 TraesCS4B01G337800 chr4B 79.349 1414 212 49 1943 3306 630015216 630013833 0.000000e+00 920.0
3 TraesCS4B01G337800 chr4B 85.597 611 69 7 1024 1615 630015886 630015276 1.270000e-174 623.0
4 TraesCS4B01G337800 chr4B 85.256 624 53 16 1029 1615 630099868 630099247 1.280000e-169 606.0
5 TraesCS4B01G337800 chr4B 76.744 1204 194 49 2319 3491 630098746 630097598 9.930000e-166 593.0
6 TraesCS4B01G337800 chr4B 81.561 602 87 11 3566 4147 630013789 630013192 3.750000e-130 475.0
7 TraesCS4B01G337800 chr4B 98.361 61 1 0 3493 3553 491134403 491134343 1.580000e-19 108.0
8 TraesCS4B01G337800 chr4B 89.286 84 9 0 4064 4147 630050390 630050307 5.670000e-19 106.0
9 TraesCS4B01G337800 chr4B 91.892 74 3 3 3483 3555 535283712 535283783 2.640000e-17 100.0
10 TraesCS4B01G337800 chr4B 87.640 89 5 6 3466 3553 668162906 668162989 9.490000e-17 99.0
11 TraesCS4B01G337800 chr4D 95.990 1596 27 6 1908 3493 490412826 490411258 0.000000e+00 2558.0
12 TraesCS4B01G337800 chr4D 94.844 931 22 10 695 1615 490413765 490412851 0.000000e+00 1430.0
13 TraesCS4B01G337800 chr4D 90.605 958 65 14 2530 3473 490376654 490377600 0.000000e+00 1247.0
14 TraesCS4B01G337800 chr4D 94.108 594 25 6 3560 4147 490411259 490410670 0.000000e+00 894.0
15 TraesCS4B01G337800 chr4D 79.076 1386 209 47 1943 3281 490404609 490403258 0.000000e+00 878.0
16 TraesCS4B01G337800 chr4D 97.804 501 9 1 1 499 490414266 490413766 0.000000e+00 863.0
17 TraesCS4B01G337800 chr4D 84.164 682 73 11 967 1615 490405348 490404669 2.720000e-176 628.0
18 TraesCS4B01G337800 chr4D 83.784 592 67 14 3566 4147 490377789 490378361 6.100000e-148 534.0
19 TraesCS4B01G337800 chr4D 81.803 599 88 12 3566 4147 490403193 490402599 2.240000e-132 483.0
20 TraesCS4B01G337800 chr4D 83.992 531 36 9 1953 2458 490375969 490376475 8.120000e-127 464.0
21 TraesCS4B01G337800 chr4D 76.963 382 76 11 254 627 468404513 468404890 1.510000e-49 207.0
22 TraesCS4B01G337800 chr4D 78.832 274 44 9 3883 4147 490416412 490416144 5.510000e-39 172.0
23 TraesCS4B01G337800 chr5A 95.339 1609 59 10 1 1598 671991647 671990044 0.000000e+00 2542.0
24 TraesCS4B01G337800 chr5A 90.833 960 61 14 2530 3473 671956110 671957058 0.000000e+00 1260.0
25 TraesCS4B01G337800 chr5A 95.013 782 22 4 1942 2712 671989643 671988868 0.000000e+00 1212.0
26 TraesCS4B01G337800 chr5A 95.099 755 17 2 2736 3490 671988880 671988146 0.000000e+00 1171.0
27 TraesCS4B01G337800 chr5A 93.813 598 28 5 3555 4147 671988146 671987553 0.000000e+00 891.0
28 TraesCS4B01G337800 chr5A 78.806 1340 187 49 1943 3217 671978096 671976789 0.000000e+00 811.0
29 TraesCS4B01G337800 chr5A 86.435 575 45 10 1909 2458 671955365 671955931 2.130000e-167 599.0
30 TraesCS4B01G337800 chr5A 84.437 604 73 11 1024 1607 671978766 671978164 3.600000e-160 575.0
31 TraesCS4B01G337800 chr5A 84.512 594 60 17 3566 4147 671957247 671957820 3.620000e-155 558.0
32 TraesCS4B01G337800 chr5A 91.916 334 18 5 1288 1615 671955002 671955332 3.780000e-125 459.0
33 TraesCS4B01G337800 chr5A 90.719 334 22 4 1288 1615 675734148 675734478 1.770000e-118 436.0
34 TraesCS4B01G337800 chr5A 89.362 282 30 0 1075 1356 672028479 672028198 5.100000e-94 355.0
35 TraesCS4B01G337800 chr5A 81.443 388 49 11 1087 1459 533282969 533282590 3.140000e-76 296.0
36 TraesCS4B01G337800 chr5A 78.495 279 56 4 341 617 290923160 290922884 3.290000e-41 180.0
37 TraesCS4B01G337800 chr5A 74.818 413 83 15 426 822 357053129 357053536 2.560000e-37 167.0
38 TraesCS4B01G337800 chr5A 77.985 268 46 8 3883 4141 671994009 671993746 5.550000e-34 156.0
39 TraesCS4B01G337800 chr5B 81.021 764 96 27 876 1615 505779622 505778884 2.800000e-156 562.0
40 TraesCS4B01G337800 chr5B 75.946 1031 166 46 2480 3491 505778062 505777095 4.890000e-124 455.0
41 TraesCS4B01G337800 chr6D 83.105 438 61 10 388 813 386227 386663 1.810000e-103 387.0
42 TraesCS4B01G337800 chr6D 85.185 81 8 2 2158 2235 4266596 4266517 3.440000e-11 80.5
43 TraesCS4B01G337800 chr6D 84.146 82 10 1 2157 2235 4643250 4643331 4.450000e-10 76.8
44 TraesCS4B01G337800 chr1D 81.481 162 23 7 1083 1244 485737382 485737228 4.350000e-25 126.0
45 TraesCS4B01G337800 chr7A 100.000 58 0 0 3496 3553 556151912 556151969 1.580000e-19 108.0
46 TraesCS4B01G337800 chr6B 98.361 61 1 0 3493 3553 65452495 65452555 1.580000e-19 108.0
47 TraesCS4B01G337800 chr6B 86.420 81 7 2 2158 2235 8423878 8423957 7.390000e-13 86.1
48 TraesCS4B01G337800 chr3D 95.522 67 1 2 3488 3553 347592649 347592714 5.670000e-19 106.0
49 TraesCS4B01G337800 chr2B 90.909 77 5 2 3479 3553 662654055 662654131 7.340000e-18 102.0
50 TraesCS4B01G337800 chr6A 91.892 74 3 3 3481 3553 5278017 5278088 2.640000e-17 100.0
51 TraesCS4B01G337800 chr6A 85.185 81 8 2 2158 2235 3001744 3001823 3.440000e-11 80.5
52 TraesCS4B01G337800 chr5D 89.744 78 4 3 3477 3553 68405375 68405301 3.410000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G337800 chr4B 630041530 630045677 4147 True 3562.000000 4141 100.0000 1 4148 2 chr4B.!!$R4 4147
1 TraesCS4B01G337800 chr4B 630013192 630015886 2694 True 672.666667 920 82.1690 1024 4147 3 chr4B.!!$R3 3123
2 TraesCS4B01G337800 chr4B 630097598 630099868 2270 True 599.500000 606 81.0000 1029 3491 2 chr4B.!!$R5 2462
3 TraesCS4B01G337800 chr4D 490410670 490416412 5742 True 1183.400000 2558 92.3156 1 4147 5 chr4D.!!$R2 4146
4 TraesCS4B01G337800 chr4D 490375969 490378361 2392 False 748.333333 1247 86.1270 1953 4147 3 chr4D.!!$F2 2194
5 TraesCS4B01G337800 chr4D 490402599 490405348 2749 True 663.000000 878 81.6810 967 4147 3 chr4D.!!$R1 3180
6 TraesCS4B01G337800 chr5A 671987553 671994009 6456 True 1194.400000 2542 91.4498 1 4147 5 chr5A.!!$R5 4146
7 TraesCS4B01G337800 chr5A 671955002 671957820 2818 False 719.000000 1260 88.4240 1288 4147 4 chr5A.!!$F3 2859
8 TraesCS4B01G337800 chr5A 671976789 671978766 1977 True 693.000000 811 81.6215 1024 3217 2 chr5A.!!$R4 2193
9 TraesCS4B01G337800 chr5B 505777095 505779622 2527 True 508.500000 562 78.4835 876 3491 2 chr5B.!!$R1 2615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 3113 1.071071 CTCCGGTGTTGGGTTTGTAGA 59.929 52.381 0.0 0.0 0.0 2.59 F
613 3114 1.700739 TCCGGTGTTGGGTTTGTAGAT 59.299 47.619 0.0 0.0 0.0 1.98 F
1995 4634 0.035881 TTGCTGGCTTCTGTCTGGAG 59.964 55.000 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 4000 0.471211 TTCTGGACGGACTTCCACCT 60.471 55.000 9.12 0.00 41.00 4.00 R
2110 4776 1.075301 AAAACAGCAAGGCCCAGGT 60.075 52.632 0.00 0.00 0.00 4.00 R
3862 6997 2.918712 TAGCTAATCTGCAGGGCTTC 57.081 50.000 21.85 8.34 34.88 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 2654 8.383374 ACTTTTGTAGATTGTATGGTACCCTA 57.617 34.615 10.07 0.10 0.00 3.53
202 2700 2.679287 GACCTCCTCGACCCCGTT 60.679 66.667 0.00 0.00 37.05 4.44
388 2889 1.916506 CTCAGACTCAGACCCAGACA 58.083 55.000 0.00 0.00 0.00 3.41
484 2985 1.945580 TGGCCTTTATTTGTTCCCCC 58.054 50.000 3.32 0.00 0.00 5.40
521 3022 1.400737 ACCCTAGATCCGGTTCTTCG 58.599 55.000 19.85 11.42 0.00 3.79
536 3037 2.649245 CTTCGGATCTGATGGCGGCA 62.649 60.000 16.34 16.34 0.00 5.69
612 3113 1.071071 CTCCGGTGTTGGGTTTGTAGA 59.929 52.381 0.00 0.00 0.00 2.59
613 3114 1.700739 TCCGGTGTTGGGTTTGTAGAT 59.299 47.619 0.00 0.00 0.00 1.98
614 3115 1.810151 CCGGTGTTGGGTTTGTAGATG 59.190 52.381 0.00 0.00 0.00 2.90
619 3120 4.522789 GGTGTTGGGTTTGTAGATGTTGAT 59.477 41.667 0.00 0.00 0.00 2.57
632 3133 7.105588 TGTAGATGTTGATGTCATGCTAGTTT 58.894 34.615 0.00 0.00 0.00 2.66
652 3153 3.536956 TGTTATGCCCCTCTAGTTTCG 57.463 47.619 0.00 0.00 0.00 3.46
666 3167 2.723273 AGTTTCGGGATTGGTGGATTC 58.277 47.619 0.00 0.00 0.00 2.52
675 3176 2.363306 TTGGTGGATTCTGCTGTGTT 57.637 45.000 0.00 0.00 0.00 3.32
769 3271 7.177744 CCATGTGTTGTACCCCTTACTAAATTT 59.822 37.037 0.00 0.00 0.00 1.82
871 3374 5.407691 GCTTTAGTACAACTTGGGAGTACAC 59.592 44.000 0.00 0.00 40.32 2.90
988 3492 4.731612 CTCGACGCAGCCTGCAGT 62.732 66.667 18.21 15.12 45.36 4.40
1100 3637 2.203422 AGATCCTCCTCCGCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
1991 4630 2.867624 TCATTTTGCTGGCTTCTGTCT 58.132 42.857 0.00 0.00 0.00 3.41
1992 4631 2.555325 TCATTTTGCTGGCTTCTGTCTG 59.445 45.455 0.00 0.00 0.00 3.51
1993 4632 1.321474 TTTTGCTGGCTTCTGTCTGG 58.679 50.000 0.00 0.00 0.00 3.86
1994 4633 0.473755 TTTGCTGGCTTCTGTCTGGA 59.526 50.000 0.00 0.00 0.00 3.86
1995 4634 0.035881 TTGCTGGCTTCTGTCTGGAG 59.964 55.000 0.00 0.00 0.00 3.86
1996 4635 1.078567 GCTGGCTTCTGTCTGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
2110 4776 4.095932 CGTGGTACAGACAGAGCATAGTAA 59.904 45.833 0.00 0.00 41.80 2.24
2305 4987 2.093658 GGTACGATGAGGACACCAATGT 60.094 50.000 0.00 0.00 43.71 2.71
2491 5256 3.565482 CCGCTTGTATTGGCATATTCAGT 59.435 43.478 0.00 0.00 0.00 3.41
2938 5877 9.675464 CCTACCTTTGTCATAAATGGTAGTTTA 57.325 33.333 19.49 0.00 46.59 2.01
2941 5880 9.582648 ACCTTTGTCATAAATGGTAGTTTAGTT 57.417 29.630 0.00 0.00 36.20 2.24
2978 5919 6.842163 TCATTTTAGCTCTTCCACGAATTTC 58.158 36.000 0.00 0.00 0.00 2.17
3087 6032 4.651778 TGTCCCATTAGGTATGCTAATGC 58.348 43.478 0.00 0.00 41.13 3.56
3285 6238 9.643693 ACTTTGCTTTTGTTTATCCAATCTATG 57.356 29.630 0.00 0.00 0.00 2.23
3406 6379 5.852738 ATTTCATCACTCGAACACTCTTG 57.147 39.130 0.00 0.00 0.00 3.02
3491 6475 6.428083 TCAGGGTCTTGTTCACTTGTTATA 57.572 37.500 0.00 0.00 0.00 0.98
3493 6477 8.141298 TCAGGGTCTTGTTCACTTGTTATATA 57.859 34.615 0.00 0.00 0.00 0.86
3498 6482 9.250624 GGTCTTGTTCACTTGTTATATAGCTAG 57.749 37.037 0.00 6.52 0.00 3.42
3499 6483 9.804758 GTCTTGTTCACTTGTTATATAGCTAGT 57.195 33.333 7.65 7.65 0.00 2.57
3504 6488 9.896263 GTTCACTTGTTATATAGCTAGTACTCC 57.104 37.037 11.97 0.00 0.00 3.85
3505 6489 8.632906 TCACTTGTTATATAGCTAGTACTCCC 57.367 38.462 11.97 0.00 0.00 4.30
3506 6490 8.446394 TCACTTGTTATATAGCTAGTACTCCCT 58.554 37.037 11.97 0.00 0.00 4.20
3507 6491 8.732531 CACTTGTTATATAGCTAGTACTCCCTC 58.267 40.741 11.97 0.00 0.00 4.30
3508 6492 8.671409 ACTTGTTATATAGCTAGTACTCCCTCT 58.329 37.037 10.96 0.00 0.00 3.69
3509 6493 8.865420 TTGTTATATAGCTAGTACTCCCTCTG 57.135 38.462 0.00 0.00 0.00 3.35
3510 6494 7.986704 TGTTATATAGCTAGTACTCCCTCTGT 58.013 38.462 0.00 0.00 0.00 3.41
3511 6495 9.109246 TGTTATATAGCTAGTACTCCCTCTGTA 57.891 37.037 0.00 0.00 0.00 2.74
3512 6496 9.956640 GTTATATAGCTAGTACTCCCTCTGTAA 57.043 37.037 0.00 0.00 0.00 2.41
3514 6498 8.866970 ATATAGCTAGTACTCCCTCTGTAAAC 57.133 38.462 0.00 0.00 0.00 2.01
3515 6499 5.195848 AGCTAGTACTCCCTCTGTAAACT 57.804 43.478 0.00 0.00 0.00 2.66
3516 6500 6.324601 AGCTAGTACTCCCTCTGTAAACTA 57.675 41.667 0.00 0.00 0.00 2.24
3517 6501 6.729428 AGCTAGTACTCCCTCTGTAAACTAA 58.271 40.000 0.00 0.00 0.00 2.24
3518 6502 7.355890 AGCTAGTACTCCCTCTGTAAACTAAT 58.644 38.462 0.00 0.00 0.00 1.73
3519 6503 8.501070 AGCTAGTACTCCCTCTGTAAACTAATA 58.499 37.037 0.00 0.00 0.00 0.98
3520 6504 9.299465 GCTAGTACTCCCTCTGTAAACTAATAT 57.701 37.037 0.00 0.00 0.00 1.28
3526 6510 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3527 6511 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3528 6512 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3529 6513 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3530 6514 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3862 6997 3.812053 GCTGGTAGACTGAAATATGCTGG 59.188 47.826 0.00 0.00 0.00 4.85
3952 7087 3.769739 TGTCATGTCCTAGCAAGTGTT 57.230 42.857 0.00 0.00 0.00 3.32
3997 7133 4.072131 GTGGAACTGCCTATGTCTTTCAA 58.928 43.478 0.00 0.00 37.63 2.69
4021 7157 9.796120 CAAATTTGAACTCCTTTTGTTACTACA 57.204 29.630 13.08 0.00 0.00 2.74
4082 7223 9.299963 GTTAATGTAATAACAAGCATGATGCAA 57.700 29.630 20.71 0.00 41.08 4.08
4141 7296 9.137459 CTCTTAAGGAACTGATATGGAGTTCTA 57.863 37.037 17.71 6.62 45.82 2.10
4147 7302 8.875168 AGGAACTGATATGGAGTTCTATTAAGG 58.125 37.037 17.71 0.00 45.82 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 2654 0.321919 AATGCTCAGTGGTGCGATGT 60.322 50.000 0.00 0.00 36.33 3.06
202 2700 3.371063 GACGAGGCGTGGAGGTGA 61.371 66.667 0.00 0.00 41.37 4.02
257 2755 3.458163 GACGGAGGGTGGCATCGA 61.458 66.667 0.00 0.00 0.00 3.59
322 2821 1.739338 CGGAGGAGGAATCCAGGTCG 61.739 65.000 0.61 0.00 36.57 4.79
388 2889 1.518903 GCAAGCCGGTCAGAGCTTTT 61.519 55.000 1.90 0.00 46.99 2.27
484 2985 0.875059 GTTTTCCTGGTGCTCGAAGG 59.125 55.000 0.00 0.00 0.00 3.46
521 3022 2.537560 CGTTGCCGCCATCAGATCC 61.538 63.158 0.00 0.00 0.00 3.36
596 3097 3.886505 TCAACATCTACAAACCCAACACC 59.113 43.478 0.00 0.00 0.00 4.16
612 3113 6.579666 AACAAACTAGCATGACATCAACAT 57.420 33.333 0.00 0.00 0.00 2.71
613 3114 7.529158 CATAACAAACTAGCATGACATCAACA 58.471 34.615 0.00 0.00 0.00 3.33
614 3115 6.470235 GCATAACAAACTAGCATGACATCAAC 59.530 38.462 0.00 0.00 0.00 3.18
619 3120 3.694072 GGGCATAACAAACTAGCATGACA 59.306 43.478 0.00 0.00 0.00 3.58
632 3133 2.169769 CCGAAACTAGAGGGGCATAACA 59.830 50.000 0.00 0.00 0.00 2.41
652 3153 1.341383 ACAGCAGAATCCACCAATCCC 60.341 52.381 0.00 0.00 0.00 3.85
666 3167 4.611355 CGAACAAAGGATACAACACAGCAG 60.611 45.833 0.00 0.00 41.41 4.24
675 3176 1.001068 TCGGTGCGAACAAAGGATACA 59.999 47.619 0.00 0.00 32.64 2.29
774 3276 6.095300 TGCGTATCATTTCATTGATTGAAGGT 59.905 34.615 4.50 0.00 44.90 3.50
988 3492 3.916184 GGGTTTGGGACTCCCTGA 58.084 61.111 15.64 1.25 45.70 3.86
992 3496 0.914902 AGGCTAGGGTTTGGGACTCC 60.915 60.000 0.00 0.00 0.00 3.85
1463 4000 0.471211 TTCTGGACGGACTTCCACCT 60.471 55.000 9.12 0.00 41.00 4.00
2110 4776 1.075301 AAAACAGCAAGGCCCAGGT 60.075 52.632 0.00 0.00 0.00 4.00
2305 4987 7.392113 TGCCGAAAAAGGTAGATAAGAAAATCA 59.608 33.333 0.00 0.00 0.00 2.57
2491 5256 3.197766 ACCGGTTCATCAGAAAGCTCATA 59.802 43.478 0.00 0.00 35.08 2.15
2664 5560 9.113876 GTTCAATGAAACTAGTAATGTTTTCCG 57.886 33.333 0.00 0.00 37.70 4.30
2847 5773 9.640963 GTAGAGCGACAATTATCATTTACCTAT 57.359 33.333 0.00 0.00 0.00 2.57
2938 5877 6.870439 GCTAAAATGATGAGAAGGCAAAAACT 59.130 34.615 0.00 0.00 0.00 2.66
2939 5878 6.870439 AGCTAAAATGATGAGAAGGCAAAAAC 59.130 34.615 0.00 0.00 0.00 2.43
2940 5879 6.996509 AGCTAAAATGATGAGAAGGCAAAAA 58.003 32.000 0.00 0.00 0.00 1.94
2941 5880 6.435277 AGAGCTAAAATGATGAGAAGGCAAAA 59.565 34.615 0.00 0.00 0.00 2.44
2942 5881 5.948162 AGAGCTAAAATGATGAGAAGGCAAA 59.052 36.000 0.00 0.00 0.00 3.68
2978 5919 8.251026 GGTAAAAGGATTCCAATAAACAGAAGG 58.749 37.037 5.29 0.00 0.00 3.46
3087 6032 6.855914 ACATAACTTGTTCAACAAACATAGCG 59.144 34.615 4.13 0.00 46.94 4.26
3285 6238 9.155975 ACAGCTACAGCAATTAATATATACTGC 57.844 33.333 3.70 0.22 45.16 4.40
3406 6379 5.964958 ATACTGCCCAACAATATGTATGC 57.035 39.130 0.00 0.00 0.00 3.14
3491 6475 6.913545 AGTTTACAGAGGGAGTACTAGCTAT 58.086 40.000 0.00 0.00 0.00 2.97
3493 6477 5.195848 AGTTTACAGAGGGAGTACTAGCT 57.804 43.478 0.00 0.00 0.00 3.32
3500 6484 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3501 6485 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3502 6486 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3503 6487 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3504 6488 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3543 6527 8.138074 GCATTTGTCATGTACTCTAGATCACTA 58.862 37.037 0.00 0.00 0.00 2.74
3544 6528 6.983307 GCATTTGTCATGTACTCTAGATCACT 59.017 38.462 0.00 0.00 0.00 3.41
3545 6529 6.983307 AGCATTTGTCATGTACTCTAGATCAC 59.017 38.462 0.00 0.00 0.00 3.06
3546 6530 7.117285 AGCATTTGTCATGTACTCTAGATCA 57.883 36.000 0.00 0.00 0.00 2.92
3547 6531 9.703892 AATAGCATTTGTCATGTACTCTAGATC 57.296 33.333 0.00 0.00 0.00 2.75
3548 6532 9.486497 CAATAGCATTTGTCATGTACTCTAGAT 57.514 33.333 0.00 0.00 0.00 1.98
3549 6533 8.695456 TCAATAGCATTTGTCATGTACTCTAGA 58.305 33.333 0.00 0.00 0.00 2.43
3550 6534 8.877808 TCAATAGCATTTGTCATGTACTCTAG 57.122 34.615 0.00 0.00 0.00 2.43
3551 6535 9.836864 AATCAATAGCATTTGTCATGTACTCTA 57.163 29.630 0.00 0.00 0.00 2.43
3554 6538 8.742777 ACAAATCAATAGCATTTGTCATGTACT 58.257 29.630 6.33 0.00 46.79 2.73
3862 6997 2.918712 TAGCTAATCTGCAGGGCTTC 57.081 50.000 21.85 8.34 34.88 3.86
3919 7054 5.869579 AGGACATGACATAACAACTGAAGT 58.130 37.500 0.00 0.00 0.00 3.01
3952 7087 9.226606 CCACTCATTACTCCATTAAAACAGTAA 57.773 33.333 6.16 6.16 36.14 2.24
3997 7133 9.185680 ACTGTAGTAACAAAAGGAGTTCAAATT 57.814 29.630 0.00 0.00 34.49 1.82
4056 7193 8.854979 TGCATCATGCTTGTTATTACATTAAC 57.145 30.769 11.84 0.00 45.31 2.01
4057 7194 9.299963 GTTGCATCATGCTTGTTATTACATTAA 57.700 29.630 11.84 0.00 45.31 1.40
4058 7195 8.465201 TGTTGCATCATGCTTGTTATTACATTA 58.535 29.630 11.84 0.00 45.31 1.90
4059 7196 7.321908 TGTTGCATCATGCTTGTTATTACATT 58.678 30.769 11.84 0.00 45.31 2.71
4060 7197 6.865411 TGTTGCATCATGCTTGTTATTACAT 58.135 32.000 11.84 0.00 45.31 2.29
4066 7207 5.388408 TTCATGTTGCATCATGCTTGTTA 57.612 34.783 26.23 10.59 45.31 2.41
4068 7209 3.945981 TTCATGTTGCATCATGCTTGT 57.054 38.095 26.23 0.00 45.31 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.