Multiple sequence alignment - TraesCS4B01G336600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G336600 chr4B 100.000 2573 0 0 1 2573 629049384 629046812 0.000000e+00 4752
1 TraesCS4B01G336600 chr4B 95.615 821 28 4 927 1747 629009341 629008529 0.000000e+00 1310
2 TraesCS4B01G336600 chr4B 95.633 687 22 4 927 1613 628972478 628971800 0.000000e+00 1096
3 TraesCS4B01G336600 chr4B 87.153 685 69 8 880 1559 628947106 628946436 0.000000e+00 760
4 TraesCS4B01G336600 chr4B 82.090 603 64 17 350 925 628976960 628976375 2.320000e-130 475
5 TraesCS4B01G336600 chr4B 81.924 603 65 17 350 925 629014490 629013905 1.080000e-128 470
6 TraesCS4B01G336600 chr4B 84.713 314 36 7 634 944 628974452 628974148 1.160000e-78 303
7 TraesCS4B01G336600 chr4B 83.483 333 38 10 529 857 628947505 628947186 6.960000e-76 294
8 TraesCS4B01G336600 chr4B 91.209 91 8 0 476 566 628718709 628718619 9.670000e-25 124
9 TraesCS4B01G336600 chr4B 87.850 107 12 1 478 583 628975911 628975805 9.670000e-25 124
10 TraesCS4B01G336600 chr4B 87.850 107 12 1 478 583 629013441 629013335 9.670000e-25 124
11 TraesCS4B01G336600 chr5D 95.005 961 47 1 1614 2573 550256899 550257859 0.000000e+00 1507
12 TraesCS4B01G336600 chr7B 94.906 962 47 2 1614 2573 630090276 630089315 0.000000e+00 1504
13 TraesCS4B01G336600 chr7A 94.797 961 48 2 1614 2573 161711006 161710047 0.000000e+00 1496
14 TraesCS4B01G336600 chr7A 94.283 962 54 1 1613 2573 427577390 427578351 0.000000e+00 1471
15 TraesCS4B01G336600 chr4D 94.525 968 49 3 1610 2573 51290914 51291881 0.000000e+00 1491
16 TraesCS4B01G336600 chr4D 86.800 1053 72 30 478 1517 489754314 489753316 0.000000e+00 1112
17 TraesCS4B01G336600 chr3B 94.589 961 51 1 1614 2573 819513512 819514472 0.000000e+00 1485
18 TraesCS4B01G336600 chr3B 94.485 961 52 1 1614 2573 765984015 765984975 0.000000e+00 1480
19 TraesCS4B01G336600 chr5B 94.173 961 55 1 1614 2573 617241579 617242539 0.000000e+00 1463
20 TraesCS4B01G336600 chr5A 94.173 961 55 1 1614 2573 602432729 602433689 0.000000e+00 1463
21 TraesCS4B01G336600 chr5A 89.577 614 41 11 903 1510 671202576 671201980 0.000000e+00 758
22 TraesCS4B01G336600 chr5A 82.567 413 43 12 526 916 671206984 671206579 1.140000e-88 337
23 TraesCS4B01G336600 chr5A 91.667 84 7 0 350 433 671207157 671207074 1.620000e-22 117
24 TraesCS4B01G336600 chr4A 88.604 351 29 8 1 349 661172544 661172203 1.420000e-112 416


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G336600 chr4B 629046812 629049384 2572 True 4752.000000 4752 100.0000 1 2573 1 chr4B.!!$R2 2572
1 TraesCS4B01G336600 chr4B 629008529 629014490 5961 True 634.666667 1310 88.4630 350 1747 3 chr4B.!!$R5 1397
2 TraesCS4B01G336600 chr4B 628946436 628947505 1069 True 527.000000 760 85.3180 529 1559 2 chr4B.!!$R3 1030
3 TraesCS4B01G336600 chr4B 628971800 628976960 5160 True 499.500000 1096 87.5715 350 1613 4 chr4B.!!$R4 1263
4 TraesCS4B01G336600 chr5D 550256899 550257859 960 False 1507.000000 1507 95.0050 1614 2573 1 chr5D.!!$F1 959
5 TraesCS4B01G336600 chr7B 630089315 630090276 961 True 1504.000000 1504 94.9060 1614 2573 1 chr7B.!!$R1 959
6 TraesCS4B01G336600 chr7A 161710047 161711006 959 True 1496.000000 1496 94.7970 1614 2573 1 chr7A.!!$R1 959
7 TraesCS4B01G336600 chr7A 427577390 427578351 961 False 1471.000000 1471 94.2830 1613 2573 1 chr7A.!!$F1 960
8 TraesCS4B01G336600 chr4D 51290914 51291881 967 False 1491.000000 1491 94.5250 1610 2573 1 chr4D.!!$F1 963
9 TraesCS4B01G336600 chr4D 489753316 489754314 998 True 1112.000000 1112 86.8000 478 1517 1 chr4D.!!$R1 1039
10 TraesCS4B01G336600 chr3B 819513512 819514472 960 False 1485.000000 1485 94.5890 1614 2573 1 chr3B.!!$F2 959
11 TraesCS4B01G336600 chr3B 765984015 765984975 960 False 1480.000000 1480 94.4850 1614 2573 1 chr3B.!!$F1 959
12 TraesCS4B01G336600 chr5B 617241579 617242539 960 False 1463.000000 1463 94.1730 1614 2573 1 chr5B.!!$F1 959
13 TraesCS4B01G336600 chr5A 602432729 602433689 960 False 1463.000000 1463 94.1730 1614 2573 1 chr5A.!!$F1 959
14 TraesCS4B01G336600 chr5A 671201980 671202576 596 True 758.000000 758 89.5770 903 1510 1 chr5A.!!$R1 607
15 TraesCS4B01G336600 chr5A 671206579 671207157 578 True 227.000000 337 87.1170 350 916 2 chr5A.!!$R2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.179059 TTGACAAGTGCTCGCAAGGA 60.179 50.0 0.0 0.0 38.47 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 6570 0.605319 TCCGTGTGCTTCATGTTCCC 60.605 55.0 0.0 0.0 0.0 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.467557 TGAACTTGCTTTCAAATTTGATGAC 57.532 32.000 21.10 13.31 37.00 3.06
26 27 6.479660 TGAACTTGCTTTCAAATTTGATGACC 59.520 34.615 21.10 10.70 37.00 4.02
27 28 6.165700 ACTTGCTTTCAAATTTGATGACCT 57.834 33.333 21.10 0.00 37.00 3.85
28 29 6.585416 ACTTGCTTTCAAATTTGATGACCTT 58.415 32.000 21.10 1.86 37.00 3.50
29 30 7.049754 ACTTGCTTTCAAATTTGATGACCTTT 58.950 30.769 21.10 2.59 37.00 3.11
30 31 7.553760 ACTTGCTTTCAAATTTGATGACCTTTT 59.446 29.630 21.10 1.25 37.00 2.27
31 32 7.862512 TGCTTTCAAATTTGATGACCTTTTT 57.137 28.000 21.10 0.00 37.00 1.94
67 68 9.919348 AATGAACTTTTTCAAATTTGATGAACG 57.081 25.926 21.10 16.99 45.01 3.95
68 69 8.472683 TGAACTTTTTCAAATTTGATGAACGT 57.527 26.923 21.10 17.52 38.87 3.99
69 70 8.930760 TGAACTTTTTCAAATTTGATGAACGTT 58.069 25.926 24.06 24.06 38.87 3.99
70 71 9.753669 GAACTTTTTCAAATTTGATGAACGTTT 57.246 25.926 24.33 14.19 36.57 3.60
74 75 9.548208 TTTTTCAAATTTGATGAACGTTTTTCC 57.452 25.926 21.10 0.00 36.57 3.13
75 76 7.834068 TTCAAATTTGATGAACGTTTTTCCA 57.166 28.000 21.10 0.00 37.00 3.53
76 77 7.834068 TCAAATTTGATGAACGTTTTTCCAA 57.166 28.000 16.91 2.39 31.01 3.53
77 78 8.430801 TCAAATTTGATGAACGTTTTTCCAAT 57.569 26.923 16.91 3.83 31.01 3.16
78 79 8.887717 TCAAATTTGATGAACGTTTTTCCAATT 58.112 25.926 16.91 9.42 31.01 2.32
79 80 9.500864 CAAATTTGATGAACGTTTTTCCAATTT 57.499 25.926 13.08 19.39 0.00 1.82
81 82 9.500864 AATTTGATGAACGTTTTTCCAATTTTG 57.499 25.926 0.46 0.00 0.00 2.44
82 83 7.602517 TTGATGAACGTTTTTCCAATTTTGT 57.397 28.000 0.46 0.00 0.00 2.83
83 84 6.998338 TGATGAACGTTTTTCCAATTTTGTG 58.002 32.000 0.46 0.00 0.00 3.33
84 85 6.813649 TGATGAACGTTTTTCCAATTTTGTGA 59.186 30.769 0.46 0.00 0.00 3.58
85 86 7.331934 TGATGAACGTTTTTCCAATTTTGTGAA 59.668 29.630 0.46 0.00 0.00 3.18
86 87 6.822506 TGAACGTTTTTCCAATTTTGTGAAC 58.177 32.000 0.46 0.00 0.00 3.18
87 88 6.647067 TGAACGTTTTTCCAATTTTGTGAACT 59.353 30.769 0.46 0.00 0.00 3.01
88 89 7.171678 TGAACGTTTTTCCAATTTTGTGAACTT 59.828 29.630 0.46 0.00 0.00 2.66
89 90 7.428282 ACGTTTTTCCAATTTTGTGAACTTT 57.572 28.000 0.00 0.00 0.00 2.66
90 91 7.866729 ACGTTTTTCCAATTTTGTGAACTTTT 58.133 26.923 0.00 0.00 0.00 2.27
91 92 8.989980 ACGTTTTTCCAATTTTGTGAACTTTTA 58.010 25.926 0.00 0.00 0.00 1.52
92 93 9.980780 CGTTTTTCCAATTTTGTGAACTTTTAT 57.019 25.926 0.00 0.00 0.00 1.40
106 107 9.474920 TGTGAACTTTTATGAAAATTCATGTCC 57.525 29.630 16.85 0.00 46.68 4.02
107 108 9.474920 GTGAACTTTTATGAAAATTCATGTCCA 57.525 29.630 16.85 0.14 46.68 4.02
173 174 9.871299 TTCTGTTTTTCTTTTTGCTTAAACAAC 57.129 25.926 0.00 0.00 35.73 3.32
174 175 9.046296 TCTGTTTTTCTTTTTGCTTAAACAACA 57.954 25.926 0.00 0.00 35.73 3.33
175 176 9.657121 CTGTTTTTCTTTTTGCTTAAACAACAA 57.343 25.926 0.00 0.00 35.73 2.83
176 177 9.657121 TGTTTTTCTTTTTGCTTAAACAACAAG 57.343 25.926 10.05 10.05 38.23 3.16
177 178 9.112789 GTTTTTCTTTTTGCTTAAACAACAAGG 57.887 29.630 14.40 4.47 37.72 3.61
178 179 6.415798 TTCTTTTTGCTTAAACAACAAGGC 57.584 33.333 14.40 0.00 37.72 4.35
179 180 5.729510 TCTTTTTGCTTAAACAACAAGGCT 58.270 33.333 14.40 0.00 37.72 4.58
180 181 6.169800 TCTTTTTGCTTAAACAACAAGGCTT 58.830 32.000 14.40 0.00 37.72 4.35
181 182 6.652900 TCTTTTTGCTTAAACAACAAGGCTTT 59.347 30.769 14.40 0.00 37.72 3.51
182 183 6.809630 TTTTGCTTAAACAACAAGGCTTTT 57.190 29.167 0.00 0.00 0.00 2.27
183 184 6.809630 TTTGCTTAAACAACAAGGCTTTTT 57.190 29.167 0.00 0.00 0.00 1.94
199 200 2.929531 TTTTTGACAAGTGCTCGCAA 57.070 40.000 0.00 0.00 0.00 4.85
200 201 2.473530 TTTTGACAAGTGCTCGCAAG 57.526 45.000 0.00 0.00 0.00 4.01
201 202 0.662619 TTTGACAAGTGCTCGCAAGG 59.337 50.000 0.00 0.00 38.47 3.61
202 203 0.179059 TTGACAAGTGCTCGCAAGGA 60.179 50.000 0.00 0.00 38.47 3.36
203 204 0.179059 TGACAAGTGCTCGCAAGGAA 60.179 50.000 0.00 0.00 38.47 3.36
204 205 0.944386 GACAAGTGCTCGCAAGGAAA 59.056 50.000 0.00 0.00 38.47 3.13
205 206 1.333619 GACAAGTGCTCGCAAGGAAAA 59.666 47.619 0.00 0.00 38.47 2.29
206 207 1.748493 ACAAGTGCTCGCAAGGAAAAA 59.252 42.857 0.00 0.00 38.47 1.94
224 225 3.895704 AAAAAGGGCTACCAAAGGAGA 57.104 42.857 0.00 0.00 40.13 3.71
225 226 3.441500 AAAAGGGCTACCAAAGGAGAG 57.558 47.619 0.00 0.00 40.13 3.20
226 227 2.344093 AAGGGCTACCAAAGGAGAGA 57.656 50.000 0.00 0.00 40.13 3.10
227 228 1.872773 AGGGCTACCAAAGGAGAGAG 58.127 55.000 0.00 0.00 40.13 3.20
228 229 0.179234 GGGCTACCAAAGGAGAGAGC 59.821 60.000 0.00 0.00 36.50 4.09
229 230 0.905357 GGCTACCAAAGGAGAGAGCA 59.095 55.000 0.00 0.00 0.00 4.26
230 231 1.134551 GGCTACCAAAGGAGAGAGCAG 60.135 57.143 0.00 0.00 0.00 4.24
231 232 1.742071 GCTACCAAAGGAGAGAGCAGC 60.742 57.143 0.00 0.00 0.00 5.25
232 233 1.552337 CTACCAAAGGAGAGAGCAGCA 59.448 52.381 0.00 0.00 0.00 4.41
233 234 0.324285 ACCAAAGGAGAGAGCAGCAG 59.676 55.000 0.00 0.00 0.00 4.24
234 235 1.025647 CCAAAGGAGAGAGCAGCAGC 61.026 60.000 0.00 0.00 42.56 5.25
276 277 3.621394 GCGAGCGAGCGAATGGTC 61.621 66.667 1.41 0.00 39.25 4.02
277 278 2.956964 CGAGCGAGCGAATGGTCC 60.957 66.667 0.00 0.00 39.47 4.46
278 279 2.184322 GAGCGAGCGAATGGTCCA 59.816 61.111 0.00 0.00 39.47 4.02
279 280 2.125512 AGCGAGCGAATGGTCCAC 60.126 61.111 0.00 0.00 39.47 4.02
280 281 3.554692 GCGAGCGAATGGTCCACG 61.555 66.667 0.00 0.00 39.47 4.94
281 282 2.885644 CGAGCGAATGGTCCACGG 60.886 66.667 0.00 0.00 39.47 4.94
282 283 3.195698 GAGCGAATGGTCCACGGC 61.196 66.667 0.00 0.00 36.61 5.68
283 284 4.778143 AGCGAATGGTCCACGGCC 62.778 66.667 0.00 0.00 0.00 6.13
285 286 4.402528 CGAATGGTCCACGGCCCA 62.403 66.667 0.00 0.00 34.66 5.36
286 287 2.750237 GAATGGTCCACGGCCCAC 60.750 66.667 0.00 0.00 32.49 4.61
287 288 3.256960 AATGGTCCACGGCCCACT 61.257 61.111 0.00 0.00 32.49 4.00
288 289 1.906105 GAATGGTCCACGGCCCACTA 61.906 60.000 0.00 0.00 32.49 2.74
289 290 1.910580 AATGGTCCACGGCCCACTAG 61.911 60.000 0.00 0.00 32.49 2.57
290 291 3.782443 GGTCCACGGCCCACTAGG 61.782 72.222 0.00 0.00 39.47 3.02
314 315 3.793144 CGTGAGCGCCAGGAAAGC 61.793 66.667 2.29 0.00 32.66 3.51
315 316 2.669569 GTGAGCGCCAGGAAAGCA 60.670 61.111 2.29 0.00 0.00 3.91
316 317 2.112928 TGAGCGCCAGGAAAGCAA 59.887 55.556 2.29 0.00 0.00 3.91
317 318 1.303561 TGAGCGCCAGGAAAGCAAT 60.304 52.632 2.29 0.00 0.00 3.56
318 319 1.308069 TGAGCGCCAGGAAAGCAATC 61.308 55.000 2.29 0.00 0.00 2.67
319 320 2.100991 GCGCCAGGAAAGCAATCG 59.899 61.111 0.00 0.00 0.00 3.34
320 321 2.793946 CGCCAGGAAAGCAATCGG 59.206 61.111 0.00 0.00 0.00 4.18
321 322 2.764314 CGCCAGGAAAGCAATCGGG 61.764 63.158 0.00 0.00 0.00 5.14
322 323 3.068729 GCCAGGAAAGCAATCGGGC 62.069 63.158 0.00 7.12 34.63 6.13
323 324 2.764314 CCAGGAAAGCAATCGGGCG 61.764 63.158 0.00 0.00 39.27 6.13
324 325 3.134127 AGGAAAGCAATCGGGCGC 61.134 61.111 0.00 0.00 39.27 6.53
325 326 3.134127 GGAAAGCAATCGGGCGCT 61.134 61.111 7.64 0.00 41.20 5.92
326 327 1.817941 GGAAAGCAATCGGGCGCTA 60.818 57.895 7.64 0.00 37.54 4.26
327 328 1.373590 GGAAAGCAATCGGGCGCTAA 61.374 55.000 7.64 0.00 37.54 3.09
328 329 0.450184 GAAAGCAATCGGGCGCTAAA 59.550 50.000 7.64 0.00 37.54 1.85
329 330 0.451783 AAAGCAATCGGGCGCTAAAG 59.548 50.000 7.64 0.00 37.54 1.85
330 331 1.376609 AAGCAATCGGGCGCTAAAGG 61.377 55.000 7.64 0.00 37.54 3.11
331 332 2.715624 CAATCGGGCGCTAAAGGC 59.284 61.111 7.64 0.00 37.64 4.35
340 341 3.567797 GCTAAAGGCGCCAGCGAG 61.568 66.667 31.54 20.16 46.35 5.03
341 342 2.892425 CTAAAGGCGCCAGCGAGG 60.892 66.667 31.54 9.49 46.35 4.63
342 343 3.371097 CTAAAGGCGCCAGCGAGGA 62.371 63.158 31.54 5.07 46.35 3.71
343 344 3.371097 TAAAGGCGCCAGCGAGGAG 62.371 63.158 31.54 0.00 46.35 3.69
348 349 4.200283 CGCCAGCGAGGAGGTCTC 62.200 72.222 6.06 0.00 42.83 3.36
364 365 0.259065 TCTCTAGCTCCCACGTCCAT 59.741 55.000 0.00 0.00 0.00 3.41
369 370 0.689080 AGCTCCCACGTCCATCATCT 60.689 55.000 0.00 0.00 0.00 2.90
370 371 0.249657 GCTCCCACGTCCATCATCTC 60.250 60.000 0.00 0.00 0.00 2.75
435 436 5.083533 AGGCAGAGAGTACATGAGAAAAG 57.916 43.478 0.00 0.00 0.00 2.27
436 437 3.620821 GGCAGAGAGTACATGAGAAAAGC 59.379 47.826 0.00 0.00 0.00 3.51
437 438 4.248859 GCAGAGAGTACATGAGAAAAGCA 58.751 43.478 0.00 0.00 0.00 3.91
574 620 0.316937 CACGCACACACCAATGACAC 60.317 55.000 0.00 0.00 0.00 3.67
585 631 1.170442 CAATGACACCATCAGCAGCA 58.830 50.000 0.00 0.00 41.91 4.41
589 635 1.347378 TGACACCATCAGCAGCAGTAA 59.653 47.619 0.00 0.00 31.91 2.24
590 636 2.005451 GACACCATCAGCAGCAGTAAG 58.995 52.381 0.00 0.00 0.00 2.34
591 637 1.625315 ACACCATCAGCAGCAGTAAGA 59.375 47.619 0.00 0.00 0.00 2.10
606 652 7.699812 GCAGCAGTAAGAATCTCAAAATTAAGG 59.300 37.037 0.00 0.00 0.00 2.69
608 654 9.692325 AGCAGTAAGAATCTCAAAATTAAGGAT 57.308 29.630 0.00 0.00 0.00 3.24
642 688 3.896133 CCATGATGCACGCAGGGC 61.896 66.667 8.87 0.00 29.81 5.19
644 690 2.361483 ATGATGCACGCAGGGCAA 60.361 55.556 9.42 0.00 45.60 4.52
704 750 4.076394 ACTACACACCGTGCCATTTATTT 58.924 39.130 0.00 0.00 36.98 1.40
705 751 3.296322 ACACACCGTGCCATTTATTTG 57.704 42.857 0.00 0.00 36.98 2.32
707 754 3.057596 ACACACCGTGCCATTTATTTGAG 60.058 43.478 0.00 0.00 36.98 3.02
715 762 3.119531 TGCCATTTATTTGAGCACTTCCG 60.120 43.478 0.00 0.00 0.00 4.30
734 782 5.587388 TCCGTTGTACTATACCCTGAAAG 57.413 43.478 0.00 0.00 0.00 2.62
800 3624 1.533756 CCACAAACAGCACAAGGAACG 60.534 52.381 0.00 0.00 0.00 3.95
864 3692 4.214971 GCGCAGATCTCAATTGACCATAAT 59.785 41.667 3.38 0.00 0.00 1.28
901 3790 4.900684 TGAAGACATAAACAATCCACGGA 58.099 39.130 0.00 0.00 0.00 4.69
909 3798 6.538742 ACATAAACAATCCACGGAAGAGTATG 59.461 38.462 0.00 3.42 0.00 2.39
916 3805 2.601763 CCACGGAAGAGTATGCGTTTAC 59.398 50.000 0.00 0.00 45.36 2.01
930 5624 8.225777 AGTATGCGTTTACTTTAGCAACTTTAC 58.774 33.333 0.00 0.00 43.19 2.01
936 5630 4.848562 ACTTTAGCAACTTTACCCAAGC 57.151 40.909 0.00 0.00 35.65 4.01
1013 5714 1.670811 GCACACCACACCACATATAGC 59.329 52.381 0.00 0.00 0.00 2.97
1030 5731 2.306341 AGCCGATCTTCACATCACAG 57.694 50.000 0.00 0.00 0.00 3.66
1032 5733 2.027745 AGCCGATCTTCACATCACAGTT 60.028 45.455 0.00 0.00 0.00 3.16
1230 5931 2.829043 GATGCGGTGCCACGACTGTA 62.829 60.000 0.98 0.00 35.47 2.74
1579 6285 7.263100 GTTTAGGGTAAAAAGAAACGAGGAA 57.737 36.000 0.00 0.00 0.00 3.36
1678 6384 9.914834 AGGGCTGTTTATATAAGATACAAAACA 57.085 29.630 0.00 0.00 35.97 2.83
1788 6497 6.707440 AACATCAGGTGTAACAATGTTGAA 57.293 33.333 9.15 0.00 41.35 2.69
1805 6514 1.098050 GAAACTGGAGCGAATGCCAT 58.902 50.000 0.00 0.00 44.31 4.40
1861 6570 3.541191 GCAAATTGCGCAGTGGTG 58.459 55.556 11.31 11.24 31.71 4.17
1954 6663 1.738099 GGTGCGACGATGCTGAACT 60.738 57.895 0.00 0.00 35.36 3.01
1979 6688 0.179073 GGACGCCATGTAGACTGCAT 60.179 55.000 0.00 0.00 0.00 3.96
2047 6756 0.319900 GCTCAACCAGAAGCTGACGA 60.320 55.000 0.00 0.00 32.44 4.20
2085 6794 0.534877 ACAGAATGCGCAACAGACCA 60.535 50.000 17.11 0.00 42.53 4.02
2100 6809 5.171339 ACAGACCAATATTCAGCTTCTGT 57.829 39.130 6.17 6.17 37.88 3.41
2138 6847 5.071923 ACTGTAACCTGCCTTTTAGAAGACT 59.928 40.000 0.00 0.00 34.71 3.24
2173 6882 8.043710 AGATTGTCACCCAAATAAACACAAAAA 58.956 29.630 0.00 0.00 36.44 1.94
2201 6910 4.895961 TGTAGATCGTCGAGTATCTGGAT 58.104 43.478 16.22 0.00 34.36 3.41
2315 7025 6.227298 ACCGAAGTATTCTCTTGACATGAT 57.773 37.500 0.00 0.00 44.75 2.45
2383 7093 8.094548 TGTTGAACAGAATAAGATATATCGGGG 58.905 37.037 7.08 0.00 0.00 5.73
2416 7126 1.747206 GCATATTGGAGAGCACCGGTT 60.747 52.381 2.97 0.00 0.00 4.44
2464 7175 1.910580 AAGGTTCACCATCGGCCGAT 61.911 55.000 34.60 34.60 38.89 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.479660 GGTCATCAAATTTGAAAGCAAGTTCA 59.520 34.615 23.91 0.00 41.13 3.18
2 3 6.703165 AGGTCATCAAATTTGAAAGCAAGTTC 59.297 34.615 23.91 7.83 41.13 3.01
5 6 7.486802 AAAGGTCATCAAATTTGAAAGCAAG 57.513 32.000 23.91 10.38 41.13 4.01
6 7 7.862512 AAAAGGTCATCAAATTTGAAAGCAA 57.137 28.000 23.91 6.17 41.13 3.91
7 8 7.862512 AAAAAGGTCATCAAATTTGAAAGCA 57.137 28.000 23.91 6.34 41.13 3.91
41 42 9.919348 CGTTCATCAAATTTGAAAAAGTTCATT 57.081 25.926 23.91 1.51 43.29 2.57
42 43 9.097257 ACGTTCATCAAATTTGAAAAAGTTCAT 57.903 25.926 23.91 2.25 43.29 2.57
43 44 8.472683 ACGTTCATCAAATTTGAAAAAGTTCA 57.527 26.923 23.91 0.00 42.12 3.18
44 45 9.753669 AAACGTTCATCAAATTTGAAAAAGTTC 57.246 25.926 29.10 16.80 41.13 3.01
48 49 9.548208 GGAAAAACGTTCATCAAATTTGAAAAA 57.452 25.926 23.91 17.23 41.13 1.94
49 50 8.721478 TGGAAAAACGTTCATCAAATTTGAAAA 58.279 25.926 23.91 17.55 41.13 2.29
50 51 8.256611 TGGAAAAACGTTCATCAAATTTGAAA 57.743 26.923 23.91 12.47 41.13 2.69
51 52 7.834068 TGGAAAAACGTTCATCAAATTTGAA 57.166 28.000 23.91 6.72 41.13 2.69
52 53 7.834068 TTGGAAAAACGTTCATCAAATTTGA 57.166 28.000 22.52 22.52 42.14 2.69
53 54 9.500864 AAATTGGAAAAACGTTCATCAAATTTG 57.499 25.926 25.46 12.15 0.00 2.32
55 56 9.500864 CAAAATTGGAAAAACGTTCATCAAATT 57.499 25.926 16.88 16.88 0.00 1.82
56 57 8.672815 ACAAAATTGGAAAAACGTTCATCAAAT 58.327 25.926 0.00 5.70 0.00 2.32
57 58 7.959651 CACAAAATTGGAAAAACGTTCATCAAA 59.040 29.630 0.00 3.34 0.00 2.69
58 59 7.331934 TCACAAAATTGGAAAAACGTTCATCAA 59.668 29.630 0.00 5.09 0.00 2.57
59 60 6.813649 TCACAAAATTGGAAAAACGTTCATCA 59.186 30.769 0.00 0.00 0.00 3.07
60 61 7.227992 TCACAAAATTGGAAAAACGTTCATC 57.772 32.000 0.00 2.78 0.00 2.92
61 62 7.333174 AGTTCACAAAATTGGAAAAACGTTCAT 59.667 29.630 0.00 0.00 0.00 2.57
62 63 6.647067 AGTTCACAAAATTGGAAAAACGTTCA 59.353 30.769 0.00 0.00 0.00 3.18
63 64 7.056002 AGTTCACAAAATTGGAAAAACGTTC 57.944 32.000 0.00 0.00 0.00 3.95
64 65 7.428282 AAGTTCACAAAATTGGAAAAACGTT 57.572 28.000 0.00 0.00 0.00 3.99
65 66 7.428282 AAAGTTCACAAAATTGGAAAAACGT 57.572 28.000 0.00 0.00 0.00 3.99
66 67 9.980780 ATAAAAGTTCACAAAATTGGAAAAACG 57.019 25.926 0.00 0.00 0.00 3.60
80 81 9.474920 GGACATGAATTTTCATAAAAGTTCACA 57.525 29.630 0.00 0.00 46.97 3.58
81 82 9.474920 TGGACATGAATTTTCATAAAAGTTCAC 57.525 29.630 0.00 0.00 46.97 3.18
147 148 9.871299 GTTGTTTAAGCAAAAAGAAAAACAGAA 57.129 25.926 6.29 0.00 37.89 3.02
148 149 9.046296 TGTTGTTTAAGCAAAAAGAAAAACAGA 57.954 25.926 6.29 0.00 37.89 3.41
149 150 9.657121 TTGTTGTTTAAGCAAAAAGAAAAACAG 57.343 25.926 6.29 0.00 37.89 3.16
150 151 9.657121 CTTGTTGTTTAAGCAAAAAGAAAAACA 57.343 25.926 23.53 6.40 43.08 2.83
151 152 9.112789 CCTTGTTGTTTAAGCAAAAAGAAAAAC 57.887 29.630 27.43 7.15 43.08 2.43
152 153 7.805542 GCCTTGTTGTTTAAGCAAAAAGAAAAA 59.194 29.630 27.43 0.42 43.08 1.94
153 154 7.174080 AGCCTTGTTGTTTAAGCAAAAAGAAAA 59.826 29.630 27.43 8.23 43.08 2.29
154 155 6.652900 AGCCTTGTTGTTTAAGCAAAAAGAAA 59.347 30.769 27.43 9.56 43.08 2.52
155 156 6.169800 AGCCTTGTTGTTTAAGCAAAAAGAA 58.830 32.000 27.43 10.20 43.08 2.52
156 157 5.729510 AGCCTTGTTGTTTAAGCAAAAAGA 58.270 33.333 27.43 2.30 43.08 2.52
157 158 6.421377 AAGCCTTGTTGTTTAAGCAAAAAG 57.579 33.333 21.83 21.83 41.19 2.27
158 159 6.809630 AAAGCCTTGTTGTTTAAGCAAAAA 57.190 29.167 6.29 6.88 0.00 1.94
159 160 6.809630 AAAAGCCTTGTTGTTTAAGCAAAA 57.190 29.167 6.29 0.00 0.00 2.44
160 161 6.809630 AAAAAGCCTTGTTGTTTAAGCAAA 57.190 29.167 6.29 0.00 0.00 3.68
180 181 2.479389 CCTTGCGAGCACTTGTCAAAAA 60.479 45.455 0.00 0.00 0.00 1.94
181 182 1.065401 CCTTGCGAGCACTTGTCAAAA 59.935 47.619 0.00 0.00 0.00 2.44
182 183 0.662619 CCTTGCGAGCACTTGTCAAA 59.337 50.000 0.00 0.00 0.00 2.69
183 184 0.179059 TCCTTGCGAGCACTTGTCAA 60.179 50.000 0.00 0.00 0.00 3.18
184 185 0.179059 TTCCTTGCGAGCACTTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
185 186 0.944386 TTTCCTTGCGAGCACTTGTC 59.056 50.000 0.00 0.00 0.00 3.18
186 187 1.388547 TTTTCCTTGCGAGCACTTGT 58.611 45.000 0.00 0.00 0.00 3.16
187 188 2.490328 TTTTTCCTTGCGAGCACTTG 57.510 45.000 0.00 0.00 0.00 3.16
204 205 3.397955 TCTCTCCTTTGGTAGCCCTTTTT 59.602 43.478 0.00 0.00 0.00 1.94
205 206 2.986728 TCTCTCCTTTGGTAGCCCTTTT 59.013 45.455 0.00 0.00 0.00 2.27
206 207 2.573915 CTCTCTCCTTTGGTAGCCCTTT 59.426 50.000 0.00 0.00 0.00 3.11
207 208 2.192263 CTCTCTCCTTTGGTAGCCCTT 58.808 52.381 0.00 0.00 0.00 3.95
208 209 1.872773 CTCTCTCCTTTGGTAGCCCT 58.127 55.000 0.00 0.00 0.00 5.19
209 210 0.179234 GCTCTCTCCTTTGGTAGCCC 59.821 60.000 0.00 0.00 0.00 5.19
210 211 0.905357 TGCTCTCTCCTTTGGTAGCC 59.095 55.000 0.00 0.00 0.00 3.93
211 212 1.742071 GCTGCTCTCTCCTTTGGTAGC 60.742 57.143 0.00 0.00 0.00 3.58
212 213 1.552337 TGCTGCTCTCTCCTTTGGTAG 59.448 52.381 0.00 0.00 0.00 3.18
213 214 1.552337 CTGCTGCTCTCTCCTTTGGTA 59.448 52.381 0.00 0.00 0.00 3.25
214 215 0.324285 CTGCTGCTCTCTCCTTTGGT 59.676 55.000 0.00 0.00 0.00 3.67
215 216 1.025647 GCTGCTGCTCTCTCCTTTGG 61.026 60.000 8.53 0.00 36.03 3.28
216 217 1.360194 CGCTGCTGCTCTCTCCTTTG 61.360 60.000 14.03 0.00 36.97 2.77
217 218 1.079266 CGCTGCTGCTCTCTCCTTT 60.079 57.895 14.03 0.00 36.97 3.11
218 219 2.578128 CGCTGCTGCTCTCTCCTT 59.422 61.111 14.03 0.00 36.97 3.36
219 220 3.459965 CCGCTGCTGCTCTCTCCT 61.460 66.667 14.03 0.00 36.97 3.69
220 221 3.714871 GACCGCTGCTGCTCTCTCC 62.715 68.421 14.03 0.00 36.97 3.71
221 222 2.202730 GACCGCTGCTGCTCTCTC 60.203 66.667 14.03 0.00 36.97 3.20
222 223 4.127040 CGACCGCTGCTGCTCTCT 62.127 66.667 14.03 0.00 36.97 3.10
223 224 4.121669 TCGACCGCTGCTGCTCTC 62.122 66.667 14.03 6.65 36.97 3.20
224 225 4.127040 CTCGACCGCTGCTGCTCT 62.127 66.667 14.03 0.00 36.97 4.09
259 260 3.621394 GACCATTCGCTCGCTCGC 61.621 66.667 0.00 0.00 0.00 5.03
260 261 2.956964 GGACCATTCGCTCGCTCG 60.957 66.667 0.00 0.00 0.00 5.03
261 262 2.167861 GTGGACCATTCGCTCGCTC 61.168 63.158 0.00 0.00 0.00 5.03
262 263 2.125512 GTGGACCATTCGCTCGCT 60.126 61.111 0.00 0.00 0.00 4.93
263 264 3.554692 CGTGGACCATTCGCTCGC 61.555 66.667 0.00 0.00 0.00 5.03
264 265 2.885644 CCGTGGACCATTCGCTCG 60.886 66.667 0.00 0.00 0.00 5.03
265 266 3.195698 GCCGTGGACCATTCGCTC 61.196 66.667 0.00 0.00 0.00 5.03
266 267 4.778143 GGCCGTGGACCATTCGCT 62.778 66.667 0.00 0.00 0.00 4.93
273 274 3.782443 CCTAGTGGGCCGTGGACC 61.782 72.222 2.95 2.95 45.60 4.46
297 298 3.793144 GCTTTCCTGGCGCTCACG 61.793 66.667 7.64 0.00 44.07 4.35
298 299 1.589716 ATTGCTTTCCTGGCGCTCAC 61.590 55.000 7.64 0.00 0.00 3.51
299 300 1.303561 ATTGCTTTCCTGGCGCTCA 60.304 52.632 7.64 2.39 0.00 4.26
300 301 1.431036 GATTGCTTTCCTGGCGCTC 59.569 57.895 7.64 0.00 0.00 5.03
301 302 2.401766 CGATTGCTTTCCTGGCGCT 61.402 57.895 7.64 0.00 0.00 5.92
302 303 2.100991 CGATTGCTTTCCTGGCGC 59.899 61.111 0.00 0.00 0.00 6.53
303 304 2.764314 CCCGATTGCTTTCCTGGCG 61.764 63.158 0.00 0.00 0.00 5.69
304 305 3.068729 GCCCGATTGCTTTCCTGGC 62.069 63.158 0.00 0.00 0.00 4.85
305 306 2.764314 CGCCCGATTGCTTTCCTGG 61.764 63.158 0.00 0.00 0.00 4.45
306 307 2.793946 CGCCCGATTGCTTTCCTG 59.206 61.111 0.00 0.00 0.00 3.86
307 308 2.252072 TAGCGCCCGATTGCTTTCCT 62.252 55.000 2.29 0.00 42.48 3.36
308 309 1.373590 TTAGCGCCCGATTGCTTTCC 61.374 55.000 2.29 0.00 42.48 3.13
309 310 0.450184 TTTAGCGCCCGATTGCTTTC 59.550 50.000 2.29 0.00 42.48 2.62
310 311 0.451783 CTTTAGCGCCCGATTGCTTT 59.548 50.000 2.29 0.00 42.48 3.51
311 312 1.376609 CCTTTAGCGCCCGATTGCTT 61.377 55.000 2.29 0.00 42.48 3.91
312 313 1.819632 CCTTTAGCGCCCGATTGCT 60.820 57.895 2.29 1.14 45.04 3.91
313 314 2.715624 CCTTTAGCGCCCGATTGC 59.284 61.111 2.29 0.00 0.00 3.56
314 315 2.715624 GCCTTTAGCGCCCGATTG 59.284 61.111 2.29 0.00 0.00 2.67
323 324 3.567797 CTCGCTGGCGCCTTTAGC 61.568 66.667 29.70 26.24 39.59 3.09
324 325 2.892425 CCTCGCTGGCGCCTTTAG 60.892 66.667 29.70 18.28 39.59 1.85
325 326 3.371097 CTCCTCGCTGGCGCCTTTA 62.371 63.158 29.70 6.34 39.59 1.85
326 327 4.767255 CTCCTCGCTGGCGCCTTT 62.767 66.667 29.70 0.00 39.59 3.11
331 332 4.200283 GAGACCTCCTCGCTGGCG 62.200 72.222 8.80 8.80 41.35 5.69
332 333 1.452145 CTAGAGACCTCCTCGCTGGC 61.452 65.000 0.00 0.00 46.49 4.85
333 334 1.452145 GCTAGAGACCTCCTCGCTGG 61.452 65.000 0.00 0.00 46.49 4.85
334 335 0.465460 AGCTAGAGACCTCCTCGCTG 60.465 60.000 0.00 0.00 46.49 5.18
335 336 0.179029 GAGCTAGAGACCTCCTCGCT 60.179 60.000 0.00 5.42 46.49 4.93
336 337 1.170290 GGAGCTAGAGACCTCCTCGC 61.170 65.000 6.83 0.00 46.49 5.03
337 338 0.536460 GGGAGCTAGAGACCTCCTCG 60.536 65.000 12.28 0.00 46.49 4.63
338 339 0.553819 TGGGAGCTAGAGACCTCCTC 59.446 60.000 12.28 5.38 45.54 3.71
339 340 0.260523 GTGGGAGCTAGAGACCTCCT 59.739 60.000 12.28 0.00 45.54 3.69
340 341 1.104577 CGTGGGAGCTAGAGACCTCC 61.105 65.000 5.75 5.75 45.52 4.30
341 342 0.394625 ACGTGGGAGCTAGAGACCTC 60.395 60.000 0.00 0.00 0.00 3.85
342 343 0.394625 GACGTGGGAGCTAGAGACCT 60.395 60.000 0.00 0.00 0.00 3.85
343 344 1.385756 GGACGTGGGAGCTAGAGACC 61.386 65.000 0.00 0.00 0.00 3.85
344 345 0.680280 TGGACGTGGGAGCTAGAGAC 60.680 60.000 0.00 0.00 0.00 3.36
345 346 0.259065 ATGGACGTGGGAGCTAGAGA 59.741 55.000 0.00 0.00 0.00 3.10
346 347 0.671251 GATGGACGTGGGAGCTAGAG 59.329 60.000 0.00 0.00 0.00 2.43
347 348 0.033503 TGATGGACGTGGGAGCTAGA 60.034 55.000 0.00 0.00 0.00 2.43
348 349 1.000283 GATGATGGACGTGGGAGCTAG 60.000 57.143 0.00 0.00 0.00 3.42
364 365 3.320610 CTCCTCAACCTAGGGAGATGA 57.679 52.381 14.81 11.36 46.82 2.92
369 370 4.018415 CCAAAAATCTCCTCAACCTAGGGA 60.018 45.833 14.81 0.08 37.24 4.20
370 371 4.018415 TCCAAAAATCTCCTCAACCTAGGG 60.018 45.833 14.81 0.00 37.24 3.53
435 436 1.134907 AGCATTTAGGCTGCATGTTGC 60.135 47.619 0.50 5.93 43.89 4.17
436 437 2.953466 AGCATTTAGGCTGCATGTTG 57.047 45.000 0.50 0.00 43.89 3.33
437 438 2.167075 GGAAGCATTTAGGCTGCATGTT 59.833 45.455 0.50 0.00 45.07 2.71
447 448 1.135689 GTGTGCACGGGAAGCATTTAG 60.136 52.381 13.13 0.00 44.79 1.85
524 558 4.019174 ACGAGGGCAAAGATCATCATTTT 58.981 39.130 0.00 0.00 0.00 1.82
574 620 3.806380 AGATTCTTACTGCTGCTGATGG 58.194 45.455 13.69 2.93 0.00 3.51
611 657 2.079170 TCATGGTGCACTCCCAAAAA 57.921 45.000 17.98 0.00 35.14 1.94
612 658 1.894466 CATCATGGTGCACTCCCAAAA 59.106 47.619 17.98 0.00 35.14 2.44
613 659 1.548081 CATCATGGTGCACTCCCAAA 58.452 50.000 17.98 0.00 35.14 3.28
614 660 0.966875 GCATCATGGTGCACTCCCAA 60.967 55.000 26.02 0.00 44.43 4.12
616 662 3.518003 GCATCATGGTGCACTCCC 58.482 61.111 26.02 0.00 44.43 4.30
622 668 2.101575 CTGCGTGCATCATGGTGC 59.898 61.111 24.36 24.36 45.25 5.01
624 670 2.438975 CCCTGCGTGCATCATGGT 60.439 61.111 0.00 0.00 0.00 3.55
625 671 3.896133 GCCCTGCGTGCATCATGG 61.896 66.667 0.00 8.27 0.00 3.66
626 672 2.011741 ATTGCCCTGCGTGCATCATG 62.012 55.000 0.00 0.00 38.76 3.07
627 673 1.731433 GATTGCCCTGCGTGCATCAT 61.731 55.000 0.00 0.00 38.76 2.45
628 674 2.361483 ATTGCCCTGCGTGCATCA 60.361 55.556 0.00 0.00 38.76 3.07
629 675 2.410469 GATTGCCCTGCGTGCATC 59.590 61.111 0.00 0.00 38.76 3.91
642 688 1.353103 GGCTGATTGTCCGCGATTG 59.647 57.895 8.23 0.00 0.00 2.67
644 690 1.078497 TTGGCTGATTGTCCGCGAT 60.078 52.632 8.23 0.00 0.00 4.58
650 696 1.672881 CGGGATTCTTGGCTGATTGTC 59.327 52.381 0.00 0.00 0.00 3.18
688 734 2.094803 TGCTCAAATAAATGGCACGGTG 60.095 45.455 3.15 3.15 0.00 4.94
690 736 2.529151 GTGCTCAAATAAATGGCACGG 58.471 47.619 0.00 0.00 42.53 4.94
695 741 4.701956 ACGGAAGTGCTCAAATAAATGG 57.298 40.909 0.00 0.00 46.97 3.16
715 762 7.544915 GTCAACTCTTTCAGGGTATAGTACAAC 59.455 40.741 0.00 0.00 0.00 3.32
755 803 7.094506 GGAAACGAGGTAAGTTTAACCATGATT 60.095 37.037 0.00 0.00 41.32 2.57
864 3692 0.035152 CTTCATAGCCCTGTGCCACA 60.035 55.000 0.00 0.00 42.71 4.17
869 3697 5.185454 TGTTTATGTCTTCATAGCCCTGTG 58.815 41.667 0.00 0.00 37.75 3.66
873 3701 5.827797 TGGATTGTTTATGTCTTCATAGCCC 59.172 40.000 0.00 0.00 37.75 5.19
901 3790 6.649557 AGTTGCTAAAGTAAACGCATACTCTT 59.350 34.615 1.64 2.61 35.09 2.85
909 3798 5.149273 GGGTAAAGTTGCTAAAGTAAACGC 58.851 41.667 0.00 0.00 0.00 4.84
916 3805 3.252458 ACGCTTGGGTAAAGTTGCTAAAG 59.748 43.478 0.00 0.00 38.25 1.85
1013 5714 6.668541 ATTAAACTGTGATGTGAAGATCGG 57.331 37.500 0.00 0.00 0.00 4.18
1030 5731 9.573133 CCATGTTGATTGGAGTAGAAATTAAAC 57.427 33.333 0.00 0.00 36.26 2.01
1032 5733 7.615365 AGCCATGTTGATTGGAGTAGAAATTAA 59.385 33.333 0.00 0.00 36.26 1.40
1221 5922 2.809601 GTGCGGGCTACAGTCGTG 60.810 66.667 0.00 0.00 0.00 4.35
1230 5931 4.827087 CGAGATGCAGTGCGGGCT 62.827 66.667 11.20 7.27 0.00 5.19
1323 6024 0.941463 CTGCTGCACTTCTCGAACGT 60.941 55.000 0.00 0.00 0.00 3.99
1579 6285 3.090037 AGATGCGTACACAACTACTCCT 58.910 45.455 0.00 0.00 0.00 3.69
1678 6384 1.225694 TCTACTATCCTTGGCCCCCAT 59.774 52.381 0.00 0.00 31.53 4.00
1788 6497 0.813184 CAATGGCATTCGCTCCAGTT 59.187 50.000 10.36 0.00 38.60 3.16
1805 6514 1.619654 CTCCCCACTGCAACATTCAA 58.380 50.000 0.00 0.00 0.00 2.69
1861 6570 0.605319 TCCGTGTGCTTCATGTTCCC 60.605 55.000 0.00 0.00 0.00 3.97
1954 6663 1.134521 GTCTACATGGCGTCCAATCCA 60.135 52.381 0.00 0.00 36.95 3.41
2100 6809 6.574465 GCAGGTTACAGTTTCCAGATCTTCTA 60.574 42.308 0.00 0.00 0.00 2.10
2138 6847 7.595819 ATTTGGGTGACAATCTTGTTTCTTA 57.404 32.000 0.00 0.00 42.43 2.10
2173 6882 1.227639 CTCGACGATCTACATCCGGT 58.772 55.000 0.00 0.00 0.00 5.28
2201 6910 2.252072 GATGCAGACTGGGCGGGTTA 62.252 60.000 4.26 0.00 0.00 2.85
2315 7025 6.724893 TGATCCTCGTGTTCCTCATTATTA 57.275 37.500 0.00 0.00 0.00 0.98
2380 7090 4.459089 GCCACTCTCACTCGCCCC 62.459 72.222 0.00 0.00 0.00 5.80
2383 7093 1.863454 CAATATGCCACTCTCACTCGC 59.137 52.381 0.00 0.00 0.00 5.03
2416 7126 8.483758 TCTGATCCTACACTATATCGCAGTATA 58.516 37.037 0.00 0.00 0.00 1.47
2464 7175 3.614630 CGGTCGATGTTGGTACCAAGTTA 60.615 47.826 27.77 16.80 36.52 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.