Multiple sequence alignment - TraesCS4B01G335600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G335600 chr4B 100.000 5933 0 0 1 5933 627327973 627322041 0.000000e+00 10957.0
1 TraesCS4B01G335600 chr4B 94.737 76 4 0 3303 3378 627324595 627324520 1.040000e-22 119.0
2 TraesCS4B01G335600 chr4B 94.737 76 4 0 3379 3454 627324671 627324596 1.040000e-22 119.0
3 TraesCS4B01G335600 chr4B 90.667 75 6 1 3532 3606 627323877 627323804 1.360000e-16 99.0
4 TraesCS4B01G335600 chr4B 90.667 75 6 1 4097 4170 627324442 627324368 1.360000e-16 99.0
5 TraesCS4B01G335600 chr5A 89.841 3022 162 60 794 3718 670631507 670628534 0.000000e+00 3746.0
6 TraesCS4B01G335600 chr5A 89.540 1195 75 24 3743 4931 670628098 670626948 0.000000e+00 1469.0
7 TraesCS4B01G335600 chr5A 88.755 747 47 17 5199 5933 670626029 670625308 0.000000e+00 880.0
8 TraesCS4B01G335600 chr5A 97.368 76 2 0 3379 3454 670628963 670628888 4.830000e-26 130.0
9 TraesCS4B01G335600 chr5A 93.333 75 4 1 3532 3606 670627752 670627679 6.290000e-20 110.0
10 TraesCS4B01G335600 chr5A 93.243 74 5 0 3305 3378 670628884 670628811 6.290000e-20 110.0
11 TraesCS4B01G335600 chr4D 89.689 3026 156 50 792 3718 489183779 489180811 0.000000e+00 3716.0
12 TraesCS4B01G335600 chr4D 91.733 750 25 12 5200 5933 489178931 489178203 0.000000e+00 1007.0
13 TraesCS4B01G335600 chr4D 89.563 709 45 16 4300 4997 489180099 489179409 0.000000e+00 872.0
14 TraesCS4B01G335600 chr4D 94.553 514 20 5 3743 4254 489180617 489180110 0.000000e+00 787.0
15 TraesCS4B01G335600 chr4D 79.044 272 40 7 3903 4170 489181181 489180923 2.840000e-38 171.0
16 TraesCS4B01G335600 chr4D 96.053 76 3 0 3379 3454 489181260 489181185 2.250000e-24 124.0
17 TraesCS4B01G335600 chr4D 97.368 38 1 0 2794 2831 489181798 489181835 1.380000e-06 65.8
18 TraesCS4B01G335600 chrUn 96.734 643 20 1 149 791 83929058 83928417 0.000000e+00 1070.0
19 TraesCS4B01G335600 chrUn 96.154 52 0 2 2714 2763 316200534 316200585 3.810000e-12 84.2
20 TraesCS4B01G335600 chr5B 96.291 647 24 0 145 791 680927224 680927870 0.000000e+00 1062.0
21 TraesCS4B01G335600 chr5B 95.363 647 30 0 145 791 647914536 647915182 0.000000e+00 1029.0
22 TraesCS4B01G335600 chr5B 92.308 65 1 2 2766 2827 75739957 75740020 8.190000e-14 89.8
23 TraesCS4B01G335600 chr6B 95.672 647 27 1 145 791 27810227 27809582 0.000000e+00 1038.0
24 TraesCS4B01G335600 chr6B 97.297 37 1 0 2794 2830 192350303 192350267 4.960000e-06 63.9
25 TraesCS4B01G335600 chr6D 96.338 628 23 0 164 791 464465369 464465996 0.000000e+00 1033.0
26 TraesCS4B01G335600 chr6D 95.645 643 27 1 150 791 14615521 14616163 0.000000e+00 1031.0
27 TraesCS4B01G335600 chr6D 94.444 54 1 2 2712 2763 99730198 99730251 1.370000e-11 82.4
28 TraesCS4B01G335600 chr3B 95.652 644 25 2 149 791 2501157 2501798 0.000000e+00 1031.0
29 TraesCS4B01G335600 chr3B 95.062 648 31 1 145 791 59705340 59704693 0.000000e+00 1018.0
30 TraesCS4B01G335600 chr3B 86.275 51 4 3 2781 2829 40237916 40237965 1.100000e-02 52.8
31 TraesCS4B01G335600 chr1B 95.216 648 30 1 145 791 429010017 429010664 0.000000e+00 1024.0
32 TraesCS4B01G335600 chr1B 84.337 83 5 7 2716 2796 614185497 614185421 2.290000e-09 75.0
33 TraesCS4B01G335600 chr6A 96.154 52 0 2 2714 2763 266828672 266828723 3.810000e-12 84.2
34 TraesCS4B01G335600 chr6A 96.154 52 0 2 2714 2763 266868289 266868340 3.810000e-12 84.2
35 TraesCS4B01G335600 chr6A 100.000 33 0 0 2766 2798 551840507 551840475 1.790000e-05 62.1
36 TraesCS4B01G335600 chr1A 90.476 63 3 3 2704 2763 550132520 550132458 4.930000e-11 80.5
37 TraesCS4B01G335600 chr1A 100.000 33 0 0 2766 2798 146184635 146184667 1.790000e-05 62.1
38 TraesCS4B01G335600 chr7B 84.337 83 5 7 2716 2796 730141466 730141390 2.290000e-09 75.0
39 TraesCS4B01G335600 chr7B 86.667 60 1 4 2766 2821 50797584 50797640 6.420000e-05 60.2
40 TraesCS4B01G335600 chr2D 84.932 73 2 2 2766 2829 157148106 157148034 1.380000e-06 65.8
41 TraesCS4B01G335600 chr7D 97.297 37 1 0 2794 2830 619877225 619877189 4.960000e-06 63.9
42 TraesCS4B01G335600 chr7A 97.297 37 1 0 2794 2830 715699402 715699438 4.960000e-06 63.9
43 TraesCS4B01G335600 chr4A 100.000 34 0 0 2794 2827 472954483 472954516 4.960000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G335600 chr4B 627322041 627327973 5932 True 10957.000000 10957 100.000000 1 5933 1 chr4B.!!$R1 5932
1 TraesCS4B01G335600 chr5A 670625308 670631507 6199 True 1074.166667 3746 92.013333 794 5933 6 chr5A.!!$R1 5139
2 TraesCS4B01G335600 chr4D 489178203 489183779 5576 True 1112.833333 3716 90.105833 792 5933 6 chr4D.!!$R1 5141
3 TraesCS4B01G335600 chrUn 83928417 83929058 641 True 1070.000000 1070 96.734000 149 791 1 chrUn.!!$R1 642
4 TraesCS4B01G335600 chr5B 680927224 680927870 646 False 1062.000000 1062 96.291000 145 791 1 chr5B.!!$F3 646
5 TraesCS4B01G335600 chr5B 647914536 647915182 646 False 1029.000000 1029 95.363000 145 791 1 chr5B.!!$F2 646
6 TraesCS4B01G335600 chr6B 27809582 27810227 645 True 1038.000000 1038 95.672000 145 791 1 chr6B.!!$R1 646
7 TraesCS4B01G335600 chr6D 464465369 464465996 627 False 1033.000000 1033 96.338000 164 791 1 chr6D.!!$F3 627
8 TraesCS4B01G335600 chr6D 14615521 14616163 642 False 1031.000000 1031 95.645000 150 791 1 chr6D.!!$F1 641
9 TraesCS4B01G335600 chr3B 2501157 2501798 641 False 1031.000000 1031 95.652000 149 791 1 chr3B.!!$F1 642
10 TraesCS4B01G335600 chr3B 59704693 59705340 647 True 1018.000000 1018 95.062000 145 791 1 chr3B.!!$R1 646
11 TraesCS4B01G335600 chr1B 429010017 429010664 647 False 1024.000000 1024 95.216000 145 791 1 chr1B.!!$F1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.038159 ACAGGTCAGCACGCTAAGTC 60.038 55.0 0.0 0.0 0.0 3.01 F
341 344 0.321919 GTGTCATGCTCAGGAAGGCA 60.322 55.0 0.0 0.0 42.8 4.75 F
1912 1972 0.250513 ACTGACTGCCCGATTTCTCC 59.749 55.0 0.0 0.0 0.0 3.71 F
3719 3866 0.168128 CTCCAACCGGCGATTTGTTC 59.832 55.0 9.3 0.0 0.0 3.18 F
4269 4855 0.109342 ATCTTGATCATGGGACGGGC 59.891 55.0 8.6 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1610 0.318614 AATTTTTGCGTCTGGGCGTG 60.319 50.000 0.00 0.00 35.06 5.34 R
2160 2228 0.179084 ATGGTATCAGGGACGCGTTG 60.179 55.000 15.53 8.39 0.00 4.10 R
3729 3876 2.286833 TCGCTGTTTGTTCACTAGCAAC 59.713 45.455 0.00 0.00 34.16 4.17 R
4869 5456 0.034059 GGATGTAGATCCCCGCTGTG 59.966 60.000 7.71 0.00 42.42 3.66 R
5169 6198 0.605319 ACTTCGCCTGAAATTCGGCA 60.605 50.000 21.72 10.97 46.62 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.405892 AGCACACATGTTTCTTTCGC 57.594 45.000 0.00 0.00 0.00 4.70
22 23 1.949525 AGCACACATGTTTCTTTCGCT 59.050 42.857 0.00 0.00 0.00 4.93
23 24 3.138304 AGCACACATGTTTCTTTCGCTA 58.862 40.909 0.00 0.00 0.00 4.26
24 25 3.753272 AGCACACATGTTTCTTTCGCTAT 59.247 39.130 0.00 0.00 0.00 2.97
25 26 4.935205 AGCACACATGTTTCTTTCGCTATA 59.065 37.500 0.00 0.00 0.00 1.31
26 27 5.063944 AGCACACATGTTTCTTTCGCTATAG 59.936 40.000 0.00 0.00 0.00 1.31
27 28 5.163854 GCACACATGTTTCTTTCGCTATAGT 60.164 40.000 0.00 0.00 0.00 2.12
28 29 6.243551 CACACATGTTTCTTTCGCTATAGTG 58.756 40.000 6.99 6.99 0.00 2.74
29 30 5.163854 ACACATGTTTCTTTCGCTATAGTGC 60.164 40.000 8.50 0.00 0.00 4.40
30 31 4.332819 ACATGTTTCTTTCGCTATAGTGCC 59.667 41.667 8.50 0.00 0.00 5.01
31 32 3.932822 TGTTTCTTTCGCTATAGTGCCA 58.067 40.909 8.50 0.00 0.00 4.92
32 33 4.320023 TGTTTCTTTCGCTATAGTGCCAA 58.680 39.130 8.50 3.44 0.00 4.52
33 34 4.391830 TGTTTCTTTCGCTATAGTGCCAAG 59.608 41.667 8.50 12.18 0.00 3.61
34 35 4.465632 TTCTTTCGCTATAGTGCCAAGA 57.534 40.909 17.38 17.38 31.13 3.02
35 36 4.465632 TCTTTCGCTATAGTGCCAAGAA 57.534 40.909 18.34 3.68 30.50 2.52
36 37 4.181578 TCTTTCGCTATAGTGCCAAGAAC 58.818 43.478 18.34 0.00 30.50 3.01
37 38 2.203800 TCGCTATAGTGCCAAGAACG 57.796 50.000 8.50 0.00 0.00 3.95
38 39 0.577269 CGCTATAGTGCCAAGAACGC 59.423 55.000 0.00 0.00 0.00 4.84
39 40 0.938008 GCTATAGTGCCAAGAACGCC 59.062 55.000 0.84 0.00 0.00 5.68
40 41 1.742411 GCTATAGTGCCAAGAACGCCA 60.742 52.381 0.84 0.00 0.00 5.69
41 42 2.627945 CTATAGTGCCAAGAACGCCAA 58.372 47.619 0.00 0.00 0.00 4.52
42 43 1.904287 ATAGTGCCAAGAACGCCAAA 58.096 45.000 0.00 0.00 0.00 3.28
43 44 1.681538 TAGTGCCAAGAACGCCAAAA 58.318 45.000 0.00 0.00 0.00 2.44
44 45 0.820871 AGTGCCAAGAACGCCAAAAA 59.179 45.000 0.00 0.00 0.00 1.94
63 64 3.996150 AAAGAGCACTGAACAACCATG 57.004 42.857 0.00 0.00 0.00 3.66
64 65 2.936919 AGAGCACTGAACAACCATGA 57.063 45.000 0.00 0.00 0.00 3.07
65 66 3.213206 AGAGCACTGAACAACCATGAA 57.787 42.857 0.00 0.00 0.00 2.57
66 67 2.880890 AGAGCACTGAACAACCATGAAC 59.119 45.455 0.00 0.00 0.00 3.18
67 68 1.956477 AGCACTGAACAACCATGAACC 59.044 47.619 0.00 0.00 0.00 3.62
68 69 1.680735 GCACTGAACAACCATGAACCA 59.319 47.619 0.00 0.00 0.00 3.67
69 70 2.543653 GCACTGAACAACCATGAACCAC 60.544 50.000 0.00 0.00 0.00 4.16
70 71 2.687425 CACTGAACAACCATGAACCACA 59.313 45.455 0.00 0.00 0.00 4.17
71 72 2.687935 ACTGAACAACCATGAACCACAC 59.312 45.455 0.00 0.00 0.00 3.82
72 73 2.687425 CTGAACAACCATGAACCACACA 59.313 45.455 0.00 0.00 0.00 3.72
73 74 2.687425 TGAACAACCATGAACCACACAG 59.313 45.455 0.00 0.00 0.00 3.66
74 75 1.691196 ACAACCATGAACCACACAGG 58.309 50.000 0.00 0.00 45.67 4.00
83 84 3.349006 CCACACAGGTCAGCACGC 61.349 66.667 0.00 0.00 0.00 5.34
84 85 2.280389 CACACAGGTCAGCACGCT 60.280 61.111 0.00 0.00 0.00 5.07
85 86 1.006220 CACACAGGTCAGCACGCTA 60.006 57.895 0.00 0.00 0.00 4.26
86 87 0.599991 CACACAGGTCAGCACGCTAA 60.600 55.000 0.00 0.00 0.00 3.09
87 88 0.319900 ACACAGGTCAGCACGCTAAG 60.320 55.000 0.00 0.00 0.00 2.18
88 89 0.319900 CACAGGTCAGCACGCTAAGT 60.320 55.000 0.00 0.00 0.00 2.24
89 90 0.038159 ACAGGTCAGCACGCTAAGTC 60.038 55.000 0.00 0.00 0.00 3.01
90 91 1.073216 CAGGTCAGCACGCTAAGTCG 61.073 60.000 0.00 0.00 0.00 4.18
91 92 1.080705 GGTCAGCACGCTAAGTCGT 60.081 57.895 0.00 0.00 44.35 4.34
92 93 0.666577 GGTCAGCACGCTAAGTCGTT 60.667 55.000 0.00 0.00 41.21 3.85
93 94 1.137513 GTCAGCACGCTAAGTCGTTT 58.862 50.000 0.00 0.00 41.21 3.60
94 95 2.322161 GTCAGCACGCTAAGTCGTTTA 58.678 47.619 0.00 0.00 41.21 2.01
95 96 2.090195 GTCAGCACGCTAAGTCGTTTAC 59.910 50.000 0.00 0.00 41.21 2.01
96 97 1.389106 CAGCACGCTAAGTCGTTTACC 59.611 52.381 0.00 0.00 41.21 2.85
97 98 0.717784 GCACGCTAAGTCGTTTACCC 59.282 55.000 0.00 0.00 41.21 3.69
98 99 1.670967 GCACGCTAAGTCGTTTACCCT 60.671 52.381 0.00 0.00 41.21 4.34
99 100 2.415893 GCACGCTAAGTCGTTTACCCTA 60.416 50.000 0.00 0.00 41.21 3.53
100 101 3.836949 CACGCTAAGTCGTTTACCCTAA 58.163 45.455 0.00 0.00 41.21 2.69
101 102 4.236935 CACGCTAAGTCGTTTACCCTAAA 58.763 43.478 0.00 0.00 41.21 1.85
102 103 4.685628 CACGCTAAGTCGTTTACCCTAAAA 59.314 41.667 0.00 0.00 41.21 1.52
103 104 4.686091 ACGCTAAGTCGTTTACCCTAAAAC 59.314 41.667 0.00 0.00 40.07 2.43
104 105 4.091945 CGCTAAGTCGTTTACCCTAAAACC 59.908 45.833 0.00 0.00 36.24 3.27
105 106 4.393062 GCTAAGTCGTTTACCCTAAAACCC 59.607 45.833 0.00 0.00 36.24 4.11
106 107 4.436113 AAGTCGTTTACCCTAAAACCCA 57.564 40.909 0.00 0.00 36.24 4.51
107 108 4.645863 AGTCGTTTACCCTAAAACCCAT 57.354 40.909 0.00 0.00 36.24 4.00
108 109 4.582869 AGTCGTTTACCCTAAAACCCATC 58.417 43.478 0.00 0.00 36.24 3.51
109 110 3.691118 GTCGTTTACCCTAAAACCCATCC 59.309 47.826 0.00 0.00 36.24 3.51
110 111 3.330110 TCGTTTACCCTAAAACCCATCCA 59.670 43.478 0.00 0.00 36.24 3.41
111 112 4.080687 CGTTTACCCTAAAACCCATCCAA 58.919 43.478 0.00 0.00 36.24 3.53
112 113 4.707934 CGTTTACCCTAAAACCCATCCAAT 59.292 41.667 0.00 0.00 36.24 3.16
113 114 5.163591 CGTTTACCCTAAAACCCATCCAATC 60.164 44.000 0.00 0.00 36.24 2.67
114 115 3.012934 ACCCTAAAACCCATCCAATCG 57.987 47.619 0.00 0.00 0.00 3.34
115 116 2.306847 CCCTAAAACCCATCCAATCGG 58.693 52.381 0.00 0.00 0.00 4.18
116 117 1.681264 CCTAAAACCCATCCAATCGGC 59.319 52.381 0.00 0.00 0.00 5.54
117 118 2.654863 CTAAAACCCATCCAATCGGCT 58.345 47.619 0.00 0.00 0.00 5.52
118 119 1.185315 AAAACCCATCCAATCGGCTG 58.815 50.000 0.00 0.00 0.00 4.85
119 120 0.331278 AAACCCATCCAATCGGCTGA 59.669 50.000 0.00 0.00 29.21 4.26
120 121 0.552848 AACCCATCCAATCGGCTGAT 59.447 50.000 0.90 0.90 35.98 2.90
121 122 1.434188 ACCCATCCAATCGGCTGATA 58.566 50.000 8.86 0.00 33.40 2.15
122 123 1.988107 ACCCATCCAATCGGCTGATAT 59.012 47.619 8.86 0.00 33.40 1.63
123 124 2.376518 ACCCATCCAATCGGCTGATATT 59.623 45.455 8.86 0.00 33.40 1.28
124 125 3.012518 CCCATCCAATCGGCTGATATTC 58.987 50.000 8.86 0.00 33.40 1.75
125 126 2.674852 CCATCCAATCGGCTGATATTCG 59.325 50.000 8.86 0.00 33.40 3.34
126 127 3.588955 CATCCAATCGGCTGATATTCGA 58.411 45.455 8.86 2.52 33.40 3.71
127 128 3.026630 TCCAATCGGCTGATATTCGAC 57.973 47.619 8.86 0.00 35.70 4.20
128 129 2.364002 TCCAATCGGCTGATATTCGACA 59.636 45.455 8.86 0.00 35.70 4.35
129 130 3.006859 TCCAATCGGCTGATATTCGACAT 59.993 43.478 8.86 0.00 35.70 3.06
130 131 3.124128 CCAATCGGCTGATATTCGACATG 59.876 47.826 8.86 0.38 35.70 3.21
131 132 3.667497 ATCGGCTGATATTCGACATGT 57.333 42.857 6.14 0.00 35.70 3.21
132 133 3.452755 TCGGCTGATATTCGACATGTT 57.547 42.857 0.00 0.00 0.00 2.71
133 134 3.123050 TCGGCTGATATTCGACATGTTG 58.877 45.455 6.77 6.77 0.00 3.33
134 135 2.221749 CGGCTGATATTCGACATGTTGG 59.778 50.000 13.27 2.41 0.00 3.77
135 136 3.466836 GGCTGATATTCGACATGTTGGA 58.533 45.455 13.27 4.67 0.00 3.53
136 137 3.496130 GGCTGATATTCGACATGTTGGAG 59.504 47.826 13.27 0.00 0.00 3.86
137 138 3.059325 GCTGATATTCGACATGTTGGAGC 60.059 47.826 13.27 0.08 0.00 4.70
138 139 3.466836 TGATATTCGACATGTTGGAGCC 58.533 45.455 13.27 0.00 0.00 4.70
139 140 2.325583 TATTCGACATGTTGGAGCCC 57.674 50.000 13.27 0.00 0.00 5.19
140 141 0.327924 ATTCGACATGTTGGAGCCCA 59.672 50.000 13.27 0.00 0.00 5.36
141 142 0.605319 TTCGACATGTTGGAGCCCAC 60.605 55.000 13.27 0.00 30.78 4.61
142 143 2.040544 CGACATGTTGGAGCCCACC 61.041 63.158 5.04 0.00 30.78 4.61
143 144 1.678970 GACATGTTGGAGCCCACCC 60.679 63.158 0.00 0.00 30.78 4.61
179 180 5.101529 TCCTCCTCCTCCAAGAAATAAAGT 58.898 41.667 0.00 0.00 0.00 2.66
189 190 7.093902 CCTCCAAGAAATAAAGTTAGGGTTTCC 60.094 40.741 0.00 0.00 31.02 3.13
341 344 0.321919 GTGTCATGCTCAGGAAGGCA 60.322 55.000 0.00 0.00 42.80 4.75
476 479 1.885887 CTTTGGTGGATTTGCTCGGAA 59.114 47.619 0.00 0.00 0.00 4.30
493 496 0.774685 GAACTCGTCGTTGTTCGTCC 59.225 55.000 14.31 0.00 40.80 4.79
581 584 2.731571 GGTGCGCTGGTCCTATGGA 61.732 63.158 9.73 0.00 0.00 3.41
715 718 0.592148 GCTAGGTGGTCTACGGATCG 59.408 60.000 0.00 0.00 0.00 3.69
801 804 7.801547 AGTTTTTCGCAAAATATCACAGATG 57.198 32.000 0.00 0.00 34.35 2.90
816 819 6.844696 TCACAGATGTAGTGACTTTGAAAC 57.155 37.500 0.00 0.00 40.80 2.78
878 882 2.981859 TTGAACTTATCCGCCTCCTC 57.018 50.000 0.00 0.00 0.00 3.71
880 884 1.120530 GAACTTATCCGCCTCCTCCA 58.879 55.000 0.00 0.00 0.00 3.86
957 961 3.918544 CCGGACGGCCAAAATCAT 58.081 55.556 8.76 0.00 0.00 2.45
1395 1434 1.140772 AGGTCCCTCCCCAAACTTCC 61.141 60.000 0.00 0.00 36.75 3.46
1412 1451 3.083349 CCCTCCACTCCATGCCGA 61.083 66.667 0.00 0.00 0.00 5.54
1413 1452 2.187946 CCTCCACTCCATGCCGAC 59.812 66.667 0.00 0.00 0.00 4.79
1433 1472 3.854459 CCTTTCCGCGCTCGCTTC 61.854 66.667 5.56 0.00 39.32 3.86
1434 1473 2.811317 CTTTCCGCGCTCGCTTCT 60.811 61.111 5.56 0.00 39.32 2.85
1461 1500 8.912988 TGTTCAAGTGAATCCATCTTTAAAAGT 58.087 29.630 0.00 0.00 36.33 2.66
1511 1551 2.102109 TTAGGACGACAAAGCCGCCA 62.102 55.000 0.00 0.00 0.00 5.69
1512 1552 2.102109 TAGGACGACAAAGCCGCCAA 62.102 55.000 0.00 0.00 0.00 4.52
1517 1557 1.065031 CGACAAAGCCGCCAAAATCG 61.065 55.000 0.00 0.00 0.00 3.34
1551 1591 6.528537 AATGCAAGAATGGCTTTGTATGTA 57.471 33.333 0.00 0.00 34.64 2.29
1552 1592 6.720112 ATGCAAGAATGGCTTTGTATGTAT 57.280 33.333 0.00 0.00 34.64 2.29
1553 1593 5.893687 TGCAAGAATGGCTTTGTATGTATG 58.106 37.500 0.00 0.00 34.64 2.39
1554 1594 5.651576 TGCAAGAATGGCTTTGTATGTATGA 59.348 36.000 0.00 0.00 34.64 2.15
1555 1595 6.321945 TGCAAGAATGGCTTTGTATGTATGAT 59.678 34.615 0.00 0.00 34.64 2.45
1556 1596 6.639686 GCAAGAATGGCTTTGTATGTATGATG 59.360 38.462 0.00 0.00 33.60 3.07
1557 1597 6.323203 AGAATGGCTTTGTATGTATGATGC 57.677 37.500 0.00 0.00 0.00 3.91
1558 1598 5.829391 AGAATGGCTTTGTATGTATGATGCA 59.171 36.000 0.00 0.00 0.00 3.96
1559 1599 6.492429 AGAATGGCTTTGTATGTATGATGCAT 59.508 34.615 0.00 0.00 0.00 3.96
1560 1600 5.694231 TGGCTTTGTATGTATGATGCATC 57.306 39.130 20.14 20.14 0.00 3.91
1569 1609 8.510243 TGTATGTATGATGCATCTCACTTTTT 57.490 30.769 26.32 12.43 0.00 1.94
1570 1610 8.615211 TGTATGTATGATGCATCTCACTTTTTC 58.385 33.333 26.32 14.42 0.00 2.29
1572 1612 6.845302 TGTATGATGCATCTCACTTTTTCAC 58.155 36.000 26.32 9.89 0.00 3.18
1573 1613 4.408993 TGATGCATCTCACTTTTTCACG 57.591 40.909 26.32 0.00 0.00 4.35
1574 1614 2.686558 TGCATCTCACTTTTTCACGC 57.313 45.000 0.00 0.00 0.00 5.34
1577 1617 1.879380 CATCTCACTTTTTCACGCCCA 59.121 47.619 0.00 0.00 0.00 5.36
1580 1620 1.264288 CTCACTTTTTCACGCCCAGAC 59.736 52.381 0.00 0.00 0.00 3.51
1587 1627 1.377366 TTCACGCCCAGACGCAAAAA 61.377 50.000 0.00 0.00 36.19 1.94
1588 1628 1.169661 TCACGCCCAGACGCAAAAAT 61.170 50.000 0.00 0.00 36.19 1.82
1589 1629 0.318614 CACGCCCAGACGCAAAAATT 60.319 50.000 0.00 0.00 36.19 1.82
1610 1659 3.521947 AATCTACTTCCGTACACAGCC 57.478 47.619 0.00 0.00 0.00 4.85
1642 1691 4.689812 CGGAGACCTGATCATGATCAATTC 59.310 45.833 32.38 28.56 46.10 2.17
1648 1697 3.553904 TGATCATGATCAATTCGGGCAA 58.446 40.909 31.46 8.26 44.14 4.52
1649 1698 4.146564 TGATCATGATCAATTCGGGCAAT 58.853 39.130 31.46 0.00 44.14 3.56
1681 1733 4.019174 AGTTGTTCCCATGTGATGAATCC 58.981 43.478 0.00 0.00 0.00 3.01
1731 1783 6.582264 GCATTAAGTGCGTTAGCTTATACTC 58.418 40.000 0.00 0.00 45.23 2.59
1732 1784 6.421202 GCATTAAGTGCGTTAGCTTATACTCT 59.579 38.462 0.00 0.00 45.23 3.24
1733 1785 7.594015 GCATTAAGTGCGTTAGCTTATACTCTA 59.406 37.037 0.00 0.00 45.23 2.43
1734 1786 8.903723 CATTAAGTGCGTTAGCTTATACTCTAC 58.096 37.037 0.00 0.00 45.42 2.59
1735 1787 6.696441 AAGTGCGTTAGCTTATACTCTACT 57.304 37.500 0.00 0.00 45.42 2.57
1736 1788 6.696441 AGTGCGTTAGCTTATACTCTACTT 57.304 37.500 0.00 0.00 45.42 2.24
1737 1789 7.098074 AGTGCGTTAGCTTATACTCTACTTT 57.902 36.000 0.00 0.00 45.42 2.66
1826 1886 0.312102 GCTGTCAACTTTGGACCAGC 59.688 55.000 11.01 11.01 37.51 4.85
1905 1965 0.830444 AGTTACCACTGACTGCCCGA 60.830 55.000 0.00 0.00 0.00 5.14
1909 1969 0.321653 ACCACTGACTGCCCGATTTC 60.322 55.000 0.00 0.00 0.00 2.17
1912 1972 0.250513 ACTGACTGCCCGATTTCTCC 59.749 55.000 0.00 0.00 0.00 3.71
1918 1978 2.464459 GCCCGATTTCTCCACGCAG 61.464 63.158 0.00 0.00 0.00 5.18
1919 1979 2.464459 CCCGATTTCTCCACGCAGC 61.464 63.158 0.00 0.00 0.00 5.25
1946 2006 6.039941 TCGTGTGGATTTTTGTCCTTTGTAAT 59.960 34.615 0.00 0.00 39.12 1.89
1947 2007 7.228906 TCGTGTGGATTTTTGTCCTTTGTAATA 59.771 33.333 0.00 0.00 39.12 0.98
1948 2008 7.863375 CGTGTGGATTTTTGTCCTTTGTAATAA 59.137 33.333 0.00 0.00 39.12 1.40
1949 2009 9.191995 GTGTGGATTTTTGTCCTTTGTAATAAG 57.808 33.333 0.00 0.00 39.12 1.73
1994 2054 7.057149 GCGAACTAGCTGTAATTTGTTCTTA 57.943 36.000 0.00 0.00 33.74 2.10
2060 2128 5.284079 CCCAATCTTTCAACTGTCTGTTTG 58.716 41.667 0.00 0.00 36.63 2.93
2079 2147 2.677914 TGAAGACTGAACTGGGACTCA 58.322 47.619 0.00 0.00 0.00 3.41
2094 2162 6.039382 ACTGGGACTCATAAAAGAAACAACAC 59.961 38.462 0.00 0.00 0.00 3.32
2104 2172 5.358298 AAAGAAACAACACGATCCTAAGC 57.642 39.130 0.00 0.00 0.00 3.09
2113 2181 0.462581 CGATCCTAAGCTGCTGGCAA 60.463 55.000 1.35 0.00 44.79 4.52
2147 2215 7.712264 TTGATGTTTTAACAAGATTTGCTGG 57.288 32.000 0.00 0.00 43.03 4.85
2148 2216 5.695816 TGATGTTTTAACAAGATTTGCTGGC 59.304 36.000 0.00 0.00 43.03 4.85
2149 2217 5.016051 TGTTTTAACAAGATTTGCTGGCA 57.984 34.783 0.00 0.00 35.67 4.92
2152 2220 4.935352 TTAACAAGATTTGCTGGCAACT 57.065 36.364 7.56 2.59 35.46 3.16
2160 2228 0.392461 TTGCTGGCAACTCGGTATCC 60.392 55.000 3.72 0.00 37.61 2.59
2163 2231 1.369625 CTGGCAACTCGGTATCCAAC 58.630 55.000 0.00 0.00 37.61 3.77
2171 2239 2.897972 GGTATCCAACGCGTCCCT 59.102 61.111 14.44 0.00 0.00 4.20
2175 2243 1.338973 GTATCCAACGCGTCCCTGATA 59.661 52.381 14.44 13.37 0.00 2.15
2177 2245 1.520787 CCAACGCGTCCCTGATACC 60.521 63.158 14.44 0.00 0.00 2.73
2186 2254 3.808728 CGTCCCTGATACCATGTTTGAT 58.191 45.455 0.00 0.00 0.00 2.57
2189 2257 5.440610 GTCCCTGATACCATGTTTGATTCT 58.559 41.667 0.00 0.00 0.00 2.40
2202 2270 5.577835 TGTTTGATTCTGTTTCCTGTTTCG 58.422 37.500 0.00 0.00 0.00 3.46
2217 2285 1.791204 GTTTCGTTTCAGGTCGAGGTC 59.209 52.381 0.00 0.00 37.38 3.85
2325 2393 1.143305 CTGTCAAGACTGCAGGAACG 58.857 55.000 19.93 3.82 0.00 3.95
2382 2450 2.124570 CTGACATTGGAGGCCCCG 60.125 66.667 0.00 0.00 37.93 5.73
2457 2525 1.139058 ACATATGCGAGTGGAACCTCC 59.861 52.381 1.58 0.00 37.80 4.30
2466 2534 3.698250 TGGAACCTCCACGTCTTTG 57.302 52.632 0.00 0.00 42.67 2.77
2581 2649 5.567430 ACTTAGGTAAATTCTTCCACCACC 58.433 41.667 0.00 0.00 33.27 4.61
2586 2654 4.022329 GGTAAATTCTTCCACCACCTTGTG 60.022 45.833 0.00 0.00 35.98 3.33
2594 2662 1.359848 CACCACCTTGTGATCGCTAC 58.640 55.000 7.94 0.00 38.55 3.58
2681 2751 3.056304 GTTCAACACTCTCTGTCTCTGC 58.944 50.000 0.00 0.00 30.29 4.26
2878 2974 3.141398 CAGTGGTGTTATCAGTTGCACT 58.859 45.455 0.00 0.00 32.90 4.40
2880 2976 4.937620 CAGTGGTGTTATCAGTTGCACTAT 59.062 41.667 0.00 0.00 32.90 2.12
2908 3004 4.026744 AGATAAGGCTAGTTCTGCTCACA 58.973 43.478 0.00 0.00 0.00 3.58
2913 3009 1.065854 GCTAGTTCTGCTCACATGGGT 60.066 52.381 0.00 0.00 0.00 4.51
3080 3176 5.458041 AAAGAACAACATTAGCAGCATGT 57.542 34.783 0.00 0.00 39.31 3.21
3132 3228 8.870075 AGGACAGAATAAAAGCAAATAAGAGT 57.130 30.769 0.00 0.00 0.00 3.24
3184 3280 2.094752 AGTGCCAATTAATCCGTGTTGC 60.095 45.455 0.00 0.00 0.00 4.17
3363 3459 2.505337 CGTGTAGTGCGCGCCTTA 60.505 61.111 30.77 18.00 44.35 2.69
3456 3553 4.082841 CGCCTTGGCATTGTATTGCATATA 60.083 41.667 12.45 0.00 44.59 0.86
3462 3559 7.905604 TGGCATTGTATTGCATATAGACTAC 57.094 36.000 0.00 0.00 44.59 2.73
3463 3560 7.679783 TGGCATTGTATTGCATATAGACTACT 58.320 34.615 0.00 0.00 44.59 2.57
3483 3580 9.194271 GACTACTTTACAGTCTTTAGGTGAAAG 57.806 37.037 0.00 0.00 45.23 2.62
3484 3581 8.702819 ACTACTTTACAGTCTTTAGGTGAAAGT 58.297 33.333 0.00 0.00 44.35 2.66
3485 3582 9.543783 CTACTTTACAGTCTTTAGGTGAAAGTT 57.456 33.333 0.00 0.00 44.35 2.66
3487 3584 9.895138 ACTTTACAGTCTTTAGGTGAAAGTTAA 57.105 29.630 0.00 0.00 44.35 2.01
3490 3587 9.895138 TTACAGTCTTTAGGTGAAAGTTAAACT 57.105 29.630 0.00 0.00 44.35 2.66
3518 3647 7.777440 GGTTCAAAGAGATCTTCAAAGGGATAT 59.223 37.037 0.00 0.00 34.61 1.63
3711 3858 2.593436 ACAAACCTCCAACCGGCG 60.593 61.111 0.00 0.00 0.00 6.46
3712 3859 2.281208 CAAACCTCCAACCGGCGA 60.281 61.111 9.30 0.00 0.00 5.54
3715 3862 0.538746 AAACCTCCAACCGGCGATTT 60.539 50.000 9.30 0.00 0.00 2.17
3716 3863 1.241315 AACCTCCAACCGGCGATTTG 61.241 55.000 9.30 11.42 0.00 2.32
3717 3864 1.674322 CCTCCAACCGGCGATTTGT 60.674 57.895 9.30 0.00 0.00 2.83
3719 3866 0.168128 CTCCAACCGGCGATTTGTTC 59.832 55.000 9.30 0.00 0.00 3.18
3720 3867 1.211709 CCAACCGGCGATTTGTTCC 59.788 57.895 9.30 0.00 0.00 3.62
3721 3868 1.241315 CCAACCGGCGATTTGTTCCT 61.241 55.000 9.30 0.00 0.00 3.36
3723 3870 0.879090 AACCGGCGATTTGTTCCTTC 59.121 50.000 9.30 0.00 0.00 3.46
3725 3872 1.276989 ACCGGCGATTTGTTCCTTCTA 59.723 47.619 9.30 0.00 0.00 2.10
3726 3873 1.664151 CCGGCGATTTGTTCCTTCTAC 59.336 52.381 9.30 0.00 0.00 2.59
3727 3874 2.343101 CGGCGATTTGTTCCTTCTACA 58.657 47.619 0.00 0.00 0.00 2.74
3729 3876 3.181520 CGGCGATTTGTTCCTTCTACAAG 60.182 47.826 0.00 0.00 36.89 3.16
3730 3877 3.751698 GGCGATTTGTTCCTTCTACAAGT 59.248 43.478 0.00 0.00 36.89 3.16
3733 3880 5.147162 CGATTTGTTCCTTCTACAAGTTGC 58.853 41.667 1.81 0.00 36.89 4.17
3734 3881 5.049405 CGATTTGTTCCTTCTACAAGTTGCT 60.049 40.000 1.81 0.00 36.89 3.91
3735 3882 6.147164 CGATTTGTTCCTTCTACAAGTTGCTA 59.853 38.462 1.81 0.00 36.89 3.49
3736 3883 6.861065 TTTGTTCCTTCTACAAGTTGCTAG 57.139 37.500 1.81 4.67 36.89 3.42
3737 3884 5.546621 TGTTCCTTCTACAAGTTGCTAGT 57.453 39.130 1.81 0.00 0.00 2.57
3738 3885 5.297547 TGTTCCTTCTACAAGTTGCTAGTG 58.702 41.667 1.81 3.16 0.00 2.74
3740 3887 5.801531 TCCTTCTACAAGTTGCTAGTGAA 57.198 39.130 1.81 0.38 0.00 3.18
3741 3888 5.539048 TCCTTCTACAAGTTGCTAGTGAAC 58.461 41.667 1.81 0.00 0.00 3.18
3766 4342 2.417933 CAGCGATTTGTTCCTTCAGAGG 59.582 50.000 0.00 0.00 45.02 3.69
3858 4434 3.376859 TCGTGTGATTATGGGATTGTTGC 59.623 43.478 0.00 0.00 0.00 4.17
3872 4448 3.591196 TTGTTGCCATAGTTTGATGCC 57.409 42.857 0.00 0.00 0.00 4.40
3874 4450 3.164268 TGTTGCCATAGTTTGATGCCTT 58.836 40.909 0.00 0.00 0.00 4.35
3875 4451 3.056678 TGTTGCCATAGTTTGATGCCTTG 60.057 43.478 0.00 0.00 0.00 3.61
3876 4452 2.806434 TGCCATAGTTTGATGCCTTGT 58.194 42.857 0.00 0.00 0.00 3.16
3877 4453 3.961849 TGCCATAGTTTGATGCCTTGTA 58.038 40.909 0.00 0.00 0.00 2.41
3878 4454 4.535781 TGCCATAGTTTGATGCCTTGTAT 58.464 39.130 0.00 0.00 0.00 2.29
3879 4455 5.689835 TGCCATAGTTTGATGCCTTGTATA 58.310 37.500 0.00 0.00 0.00 1.47
3888 4464 7.600375 AGTTTGATGCCTTGTATATATGTCTCG 59.400 37.037 0.00 0.00 0.00 4.04
3995 4571 5.358160 GCATGTGGACTAGCTTTAGGATTTT 59.642 40.000 0.00 0.00 0.00 1.82
4062 4638 3.119531 TGGTGCTGAAAGTTTTGTGTGAG 60.120 43.478 0.00 0.00 35.30 3.51
4072 4648 4.125703 AGTTTTGTGTGAGCTTCAGAGAG 58.874 43.478 0.00 0.00 0.00 3.20
4092 4668 4.093998 AGAGATACACTGCAAGCAAATTCG 59.906 41.667 0.00 0.00 37.60 3.34
4125 4702 2.748461 TGTAGCAACAAACGAACTGC 57.252 45.000 0.00 0.00 30.91 4.40
4138 4715 1.668919 CGAACTGCGTCCTGTACACAT 60.669 52.381 0.00 0.00 34.64 3.21
4192 4773 7.727181 ACAGTGATTTGTTACTTGAGAGTACT 58.273 34.615 0.00 0.00 38.07 2.73
4193 4774 8.857098 ACAGTGATTTGTTACTTGAGAGTACTA 58.143 33.333 0.00 0.00 38.07 1.82
4194 4775 9.130312 CAGTGATTTGTTACTTGAGAGTACTAC 57.870 37.037 0.00 0.00 38.07 2.73
4254 4835 6.303903 ACACGGTTGTAGGGTTATAATCTT 57.696 37.500 0.00 0.00 32.60 2.40
4256 4837 6.070653 ACACGGTTGTAGGGTTATAATCTTGA 60.071 38.462 0.00 0.00 32.60 3.02
4257 4838 6.990349 CACGGTTGTAGGGTTATAATCTTGAT 59.010 38.462 0.00 0.00 0.00 2.57
4258 4839 7.170998 CACGGTTGTAGGGTTATAATCTTGATC 59.829 40.741 0.00 0.00 0.00 2.92
4262 4843 9.003658 GTTGTAGGGTTATAATCTTGATCATGG 57.996 37.037 8.60 0.00 0.00 3.66
4263 4844 7.689299 TGTAGGGTTATAATCTTGATCATGGG 58.311 38.462 8.60 0.00 0.00 4.00
4264 4845 7.515861 TGTAGGGTTATAATCTTGATCATGGGA 59.484 37.037 8.60 2.88 0.00 4.37
4265 4846 6.784031 AGGGTTATAATCTTGATCATGGGAC 58.216 40.000 8.60 0.52 0.00 4.46
4266 4847 5.643777 GGGTTATAATCTTGATCATGGGACG 59.356 44.000 8.60 0.00 0.00 4.79
4269 4855 0.109342 ATCTTGATCATGGGACGGGC 59.891 55.000 8.60 0.00 0.00 6.13
4272 4858 2.280186 GATCATGGGACGGGCGTC 60.280 66.667 0.00 0.00 43.87 5.19
4283 4869 1.201880 GACGGGCGTCCTTAGATATCC 59.798 57.143 3.66 0.00 39.08 2.59
4286 4872 1.275573 GGGCGTCCTTAGATATCCACC 59.724 57.143 0.00 0.00 0.00 4.61
4288 4874 1.669211 GCGTCCTTAGATATCCACCGC 60.669 57.143 0.00 1.95 0.00 5.68
4290 4876 2.249139 GTCCTTAGATATCCACCGCCT 58.751 52.381 0.00 0.00 0.00 5.52
4293 4879 4.282703 GTCCTTAGATATCCACCGCCTTTA 59.717 45.833 0.00 0.00 0.00 1.85
4295 4881 4.283722 CCTTAGATATCCACCGCCTTTAGT 59.716 45.833 0.00 0.00 0.00 2.24
4297 4883 4.338379 AGATATCCACCGCCTTTAGTTC 57.662 45.455 0.00 0.00 0.00 3.01
4301 4887 1.826720 TCCACCGCCTTTAGTTCGTAT 59.173 47.619 0.00 0.00 0.00 3.06
4302 4888 2.234414 TCCACCGCCTTTAGTTCGTATT 59.766 45.455 0.00 0.00 0.00 1.89
4303 4889 3.004862 CCACCGCCTTTAGTTCGTATTT 58.995 45.455 0.00 0.00 0.00 1.40
4304 4890 4.081752 TCCACCGCCTTTAGTTCGTATTTA 60.082 41.667 0.00 0.00 0.00 1.40
4306 4892 5.295045 CCACCGCCTTTAGTTCGTATTTAAT 59.705 40.000 0.00 0.00 0.00 1.40
4308 4894 7.245604 CACCGCCTTTAGTTCGTATTTAATTT 58.754 34.615 0.00 0.00 0.00 1.82
4309 4895 7.217447 CACCGCCTTTAGTTCGTATTTAATTTG 59.783 37.037 0.00 0.00 0.00 2.32
4310 4896 6.689669 CCGCCTTTAGTTCGTATTTAATTTGG 59.310 38.462 0.00 0.00 0.00 3.28
4311 4897 6.195798 CGCCTTTAGTTCGTATTTAATTTGGC 59.804 38.462 0.00 0.00 0.00 4.52
4313 4899 7.629866 GCCTTTAGTTCGTATTTAATTTGGCCT 60.630 37.037 3.32 0.00 0.00 5.19
4314 4900 8.895737 CCTTTAGTTCGTATTTAATTTGGCCTA 58.104 33.333 3.32 0.00 0.00 3.93
4320 4906 6.908825 TCGTATTTAATTTGGCCTATCATGC 58.091 36.000 3.32 0.00 0.00 4.06
4392 4978 5.840940 AGTTGCTAGTGAATAAACACGTC 57.159 39.130 0.00 0.00 44.35 4.34
4415 5001 3.519107 TGGATCTATCTGGCTGACACAAA 59.481 43.478 0.00 0.00 0.00 2.83
4423 5009 1.955778 TGGCTGACACAAATCCACAAG 59.044 47.619 0.00 0.00 0.00 3.16
4505 5091 3.914426 ATGTCCTGTACCTTGATCACC 57.086 47.619 0.00 0.00 0.00 4.02
4506 5092 1.906574 TGTCCTGTACCTTGATCACCC 59.093 52.381 0.00 0.00 0.00 4.61
4544 5130 1.821216 TCCTGCTTCGATTTGGAACC 58.179 50.000 0.00 0.00 0.00 3.62
4558 5144 2.886913 TGGAACCAAATGAATGCCTCA 58.113 42.857 0.00 0.00 38.81 3.86
4585 5171 1.131126 CTTGTTCATGCAGGTAAGGCG 59.869 52.381 0.00 0.00 0.00 5.52
4588 5174 3.576356 CATGCAGGTAAGGCGGCG 61.576 66.667 0.51 0.51 0.00 6.46
4606 5192 4.530857 CTGATCACCGTCGGGGGC 62.531 72.222 14.96 7.03 41.60 5.80
4730 5316 4.094212 GTTCATTCTCTTCTCGCAATTGC 58.906 43.478 20.76 20.76 37.78 3.56
4760 5346 1.547372 TGTTCGTTAGGTAGGGTCTGC 59.453 52.381 0.00 0.00 0.00 4.26
4761 5347 1.547372 GTTCGTTAGGTAGGGTCTGCA 59.453 52.381 0.00 0.00 0.00 4.41
4765 5351 1.327690 TTAGGTAGGGTCTGCAGGCG 61.328 60.000 15.13 0.00 0.00 5.52
4790 5377 2.185350 CCGTCAGCTGGCCTGTAG 59.815 66.667 13.81 0.00 42.38 2.74
4815 5402 5.916318 TGACTGAAAAATGGTGCATCTTTT 58.084 33.333 5.06 5.06 0.00 2.27
4816 5403 6.347696 TGACTGAAAAATGGTGCATCTTTTT 58.652 32.000 15.72 15.72 35.42 1.94
4832 5419 1.791103 TTTTTCCGCGGAAGGTGCAG 61.791 55.000 36.54 3.58 35.38 4.41
4851 5438 3.264947 CAGAAAGCAGCTGTGTATAGCA 58.735 45.455 16.64 0.00 46.07 3.49
4852 5439 3.686241 CAGAAAGCAGCTGTGTATAGCAA 59.314 43.478 16.64 0.00 46.07 3.91
4853 5440 4.154737 CAGAAAGCAGCTGTGTATAGCAAA 59.845 41.667 16.64 0.00 46.07 3.68
4854 5441 4.394300 AGAAAGCAGCTGTGTATAGCAAAG 59.606 41.667 16.64 0.00 46.07 2.77
4869 5456 4.307443 AGCAAAGCAGAAAAACAGTACC 57.693 40.909 0.00 0.00 0.00 3.34
4884 5471 0.388294 GTACCACAGCGGGGATCTAC 59.612 60.000 3.78 0.00 40.22 2.59
4885 5472 0.032912 TACCACAGCGGGGATCTACA 60.033 55.000 3.78 0.00 40.22 2.74
4926 5513 7.712639 TCAATCATCACTTGTATCTAGCCTTTC 59.287 37.037 0.00 0.00 0.00 2.62
4931 5518 6.191315 TCACTTGTATCTAGCCTTTCTCTCT 58.809 40.000 0.00 0.00 0.00 3.10
4937 5532 1.330655 TAGCCTTTCTCTCTGCCCGG 61.331 60.000 0.00 0.00 0.00 5.73
4942 5537 0.320421 TTTCTCTCTGCCCGGTTTCG 60.320 55.000 0.00 0.00 0.00 3.46
4945 5540 1.005394 TCTCTGCCCGGTTTCGTTC 60.005 57.895 0.00 0.00 33.95 3.95
4956 5551 1.661197 TTTCGTTCGTCGGTTCGGG 60.661 57.895 0.00 0.00 40.32 5.14
4958 5553 2.731587 TTCGTTCGTCGGTTCGGGTC 62.732 60.000 0.00 0.00 40.32 4.46
4962 5557 1.747325 TTCGTCGGTTCGGGTCCTTT 61.747 55.000 0.00 0.00 0.00 3.11
4965 5560 3.419759 CGGTTCGGGTCCTTTGCG 61.420 66.667 0.00 0.00 0.00 4.85
4976 5571 0.667993 TCCTTTGCGCTTGTTTGGAG 59.332 50.000 9.73 0.00 0.00 3.86
4982 5577 1.680735 TGCGCTTGTTTGGAGATTGTT 59.319 42.857 9.73 0.00 0.00 2.83
4984 5579 2.664916 CGCTTGTTTGGAGATTGTTGG 58.335 47.619 0.00 0.00 0.00 3.77
4986 5581 2.867647 GCTTGTTTGGAGATTGTTGGGC 60.868 50.000 0.00 0.00 0.00 5.36
4987 5582 2.079170 TGTTTGGAGATTGTTGGGCA 57.921 45.000 0.00 0.00 0.00 5.36
4988 5583 2.607499 TGTTTGGAGATTGTTGGGCAT 58.393 42.857 0.00 0.00 0.00 4.40
4989 5584 2.299582 TGTTTGGAGATTGTTGGGCATG 59.700 45.455 0.00 0.00 0.00 4.06
4990 5585 1.559368 TTGGAGATTGTTGGGCATGG 58.441 50.000 0.00 0.00 0.00 3.66
4991 5586 0.703488 TGGAGATTGTTGGGCATGGA 59.297 50.000 0.00 0.00 0.00 3.41
4992 5587 1.106285 GGAGATTGTTGGGCATGGAC 58.894 55.000 0.00 0.00 0.00 4.02
4995 5590 1.076024 AGATTGTTGGGCATGGACTGT 59.924 47.619 0.00 0.00 0.00 3.55
4996 5591 1.203052 GATTGTTGGGCATGGACTGTG 59.797 52.381 0.00 0.00 0.00 3.66
4997 5592 0.106268 TTGTTGGGCATGGACTGTGT 60.106 50.000 0.00 0.00 0.00 3.72
4999 5594 1.143889 TGTTGGGCATGGACTGTGTTA 59.856 47.619 0.00 0.00 0.00 2.41
5001 5596 3.009584 TGTTGGGCATGGACTGTGTTATA 59.990 43.478 0.00 0.00 0.00 0.98
5003 5598 4.085357 TGGGCATGGACTGTGTTATATC 57.915 45.455 0.00 0.00 0.00 1.63
5004 5599 3.457749 TGGGCATGGACTGTGTTATATCA 59.542 43.478 0.00 0.00 0.00 2.15
5006 5601 4.456911 GGGCATGGACTGTGTTATATCATG 59.543 45.833 0.00 0.00 35.13 3.07
5010 5605 6.432162 GCATGGACTGTGTTATATCATGGATT 59.568 38.462 0.00 0.00 33.34 3.01
5011 5606 7.040201 GCATGGACTGTGTTATATCATGGATTT 60.040 37.037 0.00 0.00 33.34 2.17
5012 5607 8.509690 CATGGACTGTGTTATATCATGGATTTC 58.490 37.037 0.00 0.00 0.00 2.17
5017 5612 4.000325 TGTTATATCATGGATTTCGGGCG 59.000 43.478 0.00 0.00 0.00 6.13
5018 5613 4.250464 GTTATATCATGGATTTCGGGCGA 58.750 43.478 0.00 0.00 0.00 5.54
5019 5614 2.920724 TATCATGGATTTCGGGCGAA 57.079 45.000 0.00 0.00 0.00 4.70
5020 5615 2.051334 ATCATGGATTTCGGGCGAAA 57.949 45.000 0.00 0.00 46.37 3.46
5021 5616 1.827681 TCATGGATTTCGGGCGAAAA 58.172 45.000 0.00 0.00 45.60 2.29
5022 5617 1.470890 TCATGGATTTCGGGCGAAAAC 59.529 47.619 0.00 0.00 45.60 2.43
5024 5619 1.161843 TGGATTTCGGGCGAAAACTC 58.838 50.000 0.00 0.00 45.60 3.01
5025 5620 0.096454 GGATTTCGGGCGAAAACTCG 59.904 55.000 0.00 0.00 45.60 4.18
5033 5628 2.813908 CGAAAACTCGCCCTCCCG 60.814 66.667 0.00 0.00 0.00 5.14
5034 5629 3.125573 GAAAACTCGCCCTCCCGC 61.126 66.667 0.00 0.00 0.00 6.13
5035 5630 4.717313 AAAACTCGCCCTCCCGCC 62.717 66.667 0.00 0.00 0.00 6.13
5044 5818 2.283173 CCTCCCGCCAAAGCCTTT 60.283 61.111 0.00 0.00 34.57 3.11
5046 5820 2.671619 TCCCGCCAAAGCCTTTCG 60.672 61.111 0.00 0.00 34.57 3.46
5057 5831 1.672356 GCCTTTCGCTGAGCCTTGA 60.672 57.895 0.00 0.00 0.00 3.02
5089 5863 4.494091 AGGTTTTCAGTGGATCGATCAT 57.506 40.909 25.93 9.27 0.00 2.45
5090 5864 4.446371 AGGTTTTCAGTGGATCGATCATC 58.554 43.478 25.93 17.21 0.00 2.92
5092 5866 4.272018 GGTTTTCAGTGGATCGATCATCAG 59.728 45.833 25.93 14.51 32.33 2.90
5093 5867 2.808523 TCAGTGGATCGATCATCAGC 57.191 50.000 25.93 9.46 32.33 4.26
5095 5869 2.431782 TCAGTGGATCGATCATCAGCAA 59.568 45.455 25.93 3.24 32.33 3.91
5096 5870 2.801111 CAGTGGATCGATCATCAGCAAG 59.199 50.000 25.93 7.60 32.33 4.01
5097 5871 2.697229 AGTGGATCGATCATCAGCAAGA 59.303 45.455 25.93 0.00 32.33 3.02
5098 5872 3.324268 AGTGGATCGATCATCAGCAAGAT 59.676 43.478 25.93 2.83 37.48 2.40
5099 5873 4.063689 GTGGATCGATCATCAGCAAGATT 58.936 43.478 25.93 0.00 33.72 2.40
5100 5874 4.514441 GTGGATCGATCATCAGCAAGATTT 59.486 41.667 25.93 0.00 33.72 2.17
5101 5875 5.698089 GTGGATCGATCATCAGCAAGATTTA 59.302 40.000 25.93 0.00 33.72 1.40
5104 5878 6.090628 GGATCGATCATCAGCAAGATTTACTC 59.909 42.308 25.93 0.00 33.72 2.59
5105 5879 6.154203 TCGATCATCAGCAAGATTTACTCT 57.846 37.500 0.00 0.00 33.72 3.24
5108 5882 8.197439 TCGATCATCAGCAAGATTTACTCTTTA 58.803 33.333 0.00 0.00 41.60 1.85
5109 5883 8.820933 CGATCATCAGCAAGATTTACTCTTTAA 58.179 33.333 0.00 0.00 41.60 1.52
5110 5884 9.928236 GATCATCAGCAAGATTTACTCTTTAAC 57.072 33.333 0.00 0.00 41.60 2.01
5114 6097 8.539770 TCAGCAAGATTTACTCTTTAACTCAG 57.460 34.615 0.00 0.00 41.60 3.35
5116 6099 8.993121 CAGCAAGATTTACTCTTTAACTCAGAA 58.007 33.333 0.00 0.00 41.60 3.02
5135 6118 7.111247 TCAGAAGAAGATTTCCTTTGCAAAA 57.889 32.000 13.84 0.00 34.68 2.44
5136 6119 7.555087 TCAGAAGAAGATTTCCTTTGCAAAAA 58.445 30.769 13.84 5.27 34.68 1.94
5137 6120 8.206189 TCAGAAGAAGATTTCCTTTGCAAAAAT 58.794 29.630 13.84 10.13 34.68 1.82
5189 6218 0.521735 GCCGAATTTCAGGCGAAGTT 59.478 50.000 13.73 1.01 44.22 2.66
5204 6453 0.615544 AAGTTGGATGGCACCCATGG 60.616 55.000 0.00 4.14 45.26 3.66
5205 6454 1.000233 GTTGGATGGCACCCATGGA 60.000 57.895 15.22 0.00 45.26 3.41
5219 6468 2.025037 CCCATGGAAGAGACAATTGGGA 60.025 50.000 15.22 0.00 44.15 4.37
5236 6485 2.037847 ACCTTTGATGCCCAGGCC 59.962 61.111 6.14 0.00 41.09 5.19
5257 6506 3.072915 CCATGGGTGTGATCCAAGCTATA 59.927 47.826 2.85 0.00 37.87 1.31
5264 6513 6.393990 GGTGTGATCCAAGCTATATAGTCTG 58.606 44.000 11.38 8.50 0.00 3.51
5377 6627 4.447054 GCGTTGATATCCTTCTCATGTGAG 59.553 45.833 3.61 3.61 43.36 3.51
5426 6676 0.246360 TGCTCACCCAGATACACACG 59.754 55.000 0.00 0.00 0.00 4.49
5482 6733 2.818921 TGCAAATAATTGGAGGCACCT 58.181 42.857 1.84 0.00 39.86 4.00
5491 6742 1.194781 TGGAGGCACCTCTTGACCTC 61.195 60.000 16.08 5.61 42.97 3.85
5496 6747 0.321122 GCACCTCTTGACCTCACAGG 60.321 60.000 0.00 0.00 42.49 4.00
5506 6757 1.352622 ACCTCACAGGGTCAAGCCAA 61.353 55.000 0.44 0.00 40.58 4.52
5507 6758 0.607489 CCTCACAGGGTCAAGCCAAG 60.607 60.000 0.44 0.00 39.65 3.61
5508 6759 0.607489 CTCACAGGGTCAAGCCAAGG 60.607 60.000 0.44 0.00 39.65 3.61
5509 6760 2.116125 ACAGGGTCAAGCCAAGGC 59.884 61.111 2.02 2.02 39.65 4.35
5567 6819 2.194271 GGAAGAAGACGGACTATTGCG 58.806 52.381 0.00 0.00 43.33 4.85
5568 6820 2.194271 GAAGAAGACGGACTATTGCGG 58.806 52.381 0.00 0.00 41.70 5.69
5610 6862 1.883275 CGGACAAATTTACAGCCACCA 59.117 47.619 0.00 0.00 0.00 4.17
5613 6865 3.253230 GACAAATTTACAGCCACCATGC 58.747 45.455 0.00 0.00 0.00 4.06
5671 6924 1.076438 AAGAACAAAGGGGAGGAGGG 58.924 55.000 0.00 0.00 0.00 4.30
5770 7024 4.792804 GGGTGGAGCCTGAGCAGC 62.793 72.222 0.00 0.00 43.56 5.25
5864 7133 0.610174 TCCTTCAGTAGGTGCTGCTG 59.390 55.000 0.00 0.00 45.03 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.721090 GCGAAAGAAACATGTGTGCTTC 59.279 45.455 0.00 0.00 31.97 3.86
1 2 2.358898 AGCGAAAGAAACATGTGTGCTT 59.641 40.909 0.00 0.38 0.00 3.91
2 3 1.949525 AGCGAAAGAAACATGTGTGCT 59.050 42.857 0.00 0.00 0.00 4.40
3 4 2.405892 AGCGAAAGAAACATGTGTGC 57.594 45.000 0.00 0.00 0.00 4.57
4 5 6.243551 CACTATAGCGAAAGAAACATGTGTG 58.756 40.000 0.00 0.00 0.00 3.82
5 6 5.163854 GCACTATAGCGAAAGAAACATGTGT 60.164 40.000 0.00 0.00 0.00 3.72
6 7 5.258622 GCACTATAGCGAAAGAAACATGTG 58.741 41.667 0.00 0.00 0.00 3.21
7 8 4.332819 GGCACTATAGCGAAAGAAACATGT 59.667 41.667 0.00 0.00 34.64 3.21
8 9 4.332543 TGGCACTATAGCGAAAGAAACATG 59.667 41.667 0.00 0.00 34.64 3.21
9 10 4.513442 TGGCACTATAGCGAAAGAAACAT 58.487 39.130 0.00 0.00 34.64 2.71
10 11 3.932822 TGGCACTATAGCGAAAGAAACA 58.067 40.909 0.00 0.00 34.64 2.83
11 12 4.630069 TCTTGGCACTATAGCGAAAGAAAC 59.370 41.667 0.00 0.00 35.95 2.78
12 13 4.827692 TCTTGGCACTATAGCGAAAGAAA 58.172 39.130 0.00 0.00 35.95 2.52
13 14 4.465632 TCTTGGCACTATAGCGAAAGAA 57.534 40.909 0.00 0.00 35.95 2.52
14 15 4.181578 GTTCTTGGCACTATAGCGAAAGA 58.818 43.478 0.00 1.42 36.62 2.52
15 16 3.000322 CGTTCTTGGCACTATAGCGAAAG 60.000 47.826 0.00 0.00 31.84 2.62
16 17 2.927477 CGTTCTTGGCACTATAGCGAAA 59.073 45.455 0.00 0.00 31.84 3.46
17 18 2.536365 CGTTCTTGGCACTATAGCGAA 58.464 47.619 0.00 0.00 34.64 4.70
18 19 1.801395 GCGTTCTTGGCACTATAGCGA 60.801 52.381 0.00 0.00 34.64 4.93
19 20 0.577269 GCGTTCTTGGCACTATAGCG 59.423 55.000 0.00 0.00 34.64 4.26
20 21 0.938008 GGCGTTCTTGGCACTATAGC 59.062 55.000 0.00 0.00 0.00 2.97
21 22 2.309528 TGGCGTTCTTGGCACTATAG 57.690 50.000 0.00 0.00 39.79 1.31
22 23 2.772077 TTGGCGTTCTTGGCACTATA 57.228 45.000 0.00 0.00 44.88 1.31
23 24 1.904287 TTTGGCGTTCTTGGCACTAT 58.096 45.000 0.00 0.00 44.88 2.12
24 25 1.681538 TTTTGGCGTTCTTGGCACTA 58.318 45.000 0.00 0.00 44.88 2.74
25 26 0.820871 TTTTTGGCGTTCTTGGCACT 59.179 45.000 0.00 0.00 44.88 4.40
26 27 3.354131 TTTTTGGCGTTCTTGGCAC 57.646 47.368 0.00 0.00 44.88 5.01
41 42 4.402155 TCATGGTTGTTCAGTGCTCTTTTT 59.598 37.500 0.00 0.00 0.00 1.94
42 43 3.953612 TCATGGTTGTTCAGTGCTCTTTT 59.046 39.130 0.00 0.00 0.00 2.27
43 44 3.554934 TCATGGTTGTTCAGTGCTCTTT 58.445 40.909 0.00 0.00 0.00 2.52
44 45 3.213206 TCATGGTTGTTCAGTGCTCTT 57.787 42.857 0.00 0.00 0.00 2.85
45 46 2.880890 GTTCATGGTTGTTCAGTGCTCT 59.119 45.455 0.00 0.00 0.00 4.09
46 47 2.030805 GGTTCATGGTTGTTCAGTGCTC 60.031 50.000 0.00 0.00 0.00 4.26
47 48 1.956477 GGTTCATGGTTGTTCAGTGCT 59.044 47.619 0.00 0.00 0.00 4.40
48 49 1.680735 TGGTTCATGGTTGTTCAGTGC 59.319 47.619 0.00 0.00 0.00 4.40
49 50 2.687425 TGTGGTTCATGGTTGTTCAGTG 59.313 45.455 0.00 0.00 0.00 3.66
50 51 2.687935 GTGTGGTTCATGGTTGTTCAGT 59.312 45.455 0.00 0.00 0.00 3.41
51 52 2.687425 TGTGTGGTTCATGGTTGTTCAG 59.313 45.455 0.00 0.00 0.00 3.02
52 53 2.687425 CTGTGTGGTTCATGGTTGTTCA 59.313 45.455 0.00 0.00 0.00 3.18
53 54 2.034558 CCTGTGTGGTTCATGGTTGTTC 59.965 50.000 0.00 0.00 0.00 3.18
54 55 2.031120 CCTGTGTGGTTCATGGTTGTT 58.969 47.619 0.00 0.00 0.00 2.83
55 56 1.691196 CCTGTGTGGTTCATGGTTGT 58.309 50.000 0.00 0.00 0.00 3.32
66 67 2.434658 TAGCGTGCTGACCTGTGTGG 62.435 60.000 4.25 0.00 42.93 4.17
67 68 0.599991 TTAGCGTGCTGACCTGTGTG 60.600 55.000 4.25 0.00 0.00 3.82
68 69 0.319900 CTTAGCGTGCTGACCTGTGT 60.320 55.000 4.25 0.00 0.00 3.72
69 70 0.319900 ACTTAGCGTGCTGACCTGTG 60.320 55.000 4.25 0.00 0.00 3.66
70 71 0.038159 GACTTAGCGTGCTGACCTGT 60.038 55.000 4.25 0.00 0.00 4.00
71 72 1.073216 CGACTTAGCGTGCTGACCTG 61.073 60.000 4.25 0.00 0.00 4.00
72 73 1.213013 CGACTTAGCGTGCTGACCT 59.787 57.895 4.25 0.00 0.00 3.85
73 74 0.666577 AACGACTTAGCGTGCTGACC 60.667 55.000 4.25 0.00 44.86 4.02
74 75 1.137513 AAACGACTTAGCGTGCTGAC 58.862 50.000 4.25 0.00 44.86 3.51
75 76 2.322161 GTAAACGACTTAGCGTGCTGA 58.678 47.619 4.25 0.00 44.86 4.26
76 77 1.389106 GGTAAACGACTTAGCGTGCTG 59.611 52.381 4.25 0.00 44.86 4.41
77 78 1.670967 GGGTAAACGACTTAGCGTGCT 60.671 52.381 0.00 0.00 44.86 4.40
78 79 0.717784 GGGTAAACGACTTAGCGTGC 59.282 55.000 2.91 0.00 44.86 5.34
79 80 2.358939 AGGGTAAACGACTTAGCGTG 57.641 50.000 2.91 0.00 44.86 5.34
81 82 4.091945 GGTTTTAGGGTAAACGACTTAGCG 59.908 45.833 0.00 0.00 38.64 4.26
82 83 4.393062 GGGTTTTAGGGTAAACGACTTAGC 59.607 45.833 0.00 0.00 38.58 3.09
83 84 5.550290 TGGGTTTTAGGGTAAACGACTTAG 58.450 41.667 0.00 0.00 38.58 2.18
84 85 5.559148 TGGGTTTTAGGGTAAACGACTTA 57.441 39.130 0.00 0.00 38.58 2.24
85 86 4.436113 TGGGTTTTAGGGTAAACGACTT 57.564 40.909 0.00 0.00 38.58 3.01
86 87 4.566278 GGATGGGTTTTAGGGTAAACGACT 60.566 45.833 0.00 0.00 38.58 4.18
87 88 3.691118 GGATGGGTTTTAGGGTAAACGAC 59.309 47.826 0.00 0.00 38.58 4.34
88 89 3.330110 TGGATGGGTTTTAGGGTAAACGA 59.670 43.478 0.00 0.00 38.58 3.85
89 90 3.688235 TGGATGGGTTTTAGGGTAAACG 58.312 45.455 0.00 0.00 38.58 3.60
90 91 5.163591 CGATTGGATGGGTTTTAGGGTAAAC 60.164 44.000 0.00 0.00 37.30 2.01
91 92 4.951094 CGATTGGATGGGTTTTAGGGTAAA 59.049 41.667 0.00 0.00 0.00 2.01
92 93 4.528920 CGATTGGATGGGTTTTAGGGTAA 58.471 43.478 0.00 0.00 0.00 2.85
93 94 3.117813 CCGATTGGATGGGTTTTAGGGTA 60.118 47.826 0.00 0.00 37.49 3.69
94 95 2.357777 CCGATTGGATGGGTTTTAGGGT 60.358 50.000 0.00 0.00 37.49 4.34
95 96 2.306847 CCGATTGGATGGGTTTTAGGG 58.693 52.381 0.00 0.00 37.49 3.53
96 97 1.681264 GCCGATTGGATGGGTTTTAGG 59.319 52.381 1.98 0.00 37.49 2.69
97 98 2.654863 AGCCGATTGGATGGGTTTTAG 58.345 47.619 1.98 0.00 37.49 1.85
98 99 2.818751 AGCCGATTGGATGGGTTTTA 57.181 45.000 1.98 0.00 37.49 1.52
99 100 3.689832 AGCCGATTGGATGGGTTTT 57.310 47.368 1.98 0.00 37.49 2.43
106 107 3.006859 TGTCGAATATCAGCCGATTGGAT 59.993 43.478 1.98 0.00 37.49 3.41
107 108 2.364002 TGTCGAATATCAGCCGATTGGA 59.636 45.455 1.98 0.00 37.49 3.53
108 109 2.754472 TGTCGAATATCAGCCGATTGG 58.246 47.619 0.00 0.00 34.71 3.16
109 110 3.742882 ACATGTCGAATATCAGCCGATTG 59.257 43.478 0.00 0.00 34.71 2.67
110 111 3.995199 ACATGTCGAATATCAGCCGATT 58.005 40.909 0.00 0.00 34.71 3.34
111 112 3.667497 ACATGTCGAATATCAGCCGAT 57.333 42.857 0.00 0.00 34.71 4.18
112 113 3.123050 CAACATGTCGAATATCAGCCGA 58.877 45.455 0.00 0.00 0.00 5.54
113 114 2.221749 CCAACATGTCGAATATCAGCCG 59.778 50.000 0.00 0.00 0.00 5.52
114 115 3.466836 TCCAACATGTCGAATATCAGCC 58.533 45.455 0.00 0.00 0.00 4.85
115 116 3.059325 GCTCCAACATGTCGAATATCAGC 60.059 47.826 0.00 0.00 0.00 4.26
116 117 3.496130 GGCTCCAACATGTCGAATATCAG 59.504 47.826 0.00 0.00 0.00 2.90
117 118 3.466836 GGCTCCAACATGTCGAATATCA 58.533 45.455 0.00 0.00 0.00 2.15
118 119 2.808543 GGGCTCCAACATGTCGAATATC 59.191 50.000 0.00 0.00 0.00 1.63
119 120 2.172505 TGGGCTCCAACATGTCGAATAT 59.827 45.455 0.00 0.00 0.00 1.28
120 121 1.557371 TGGGCTCCAACATGTCGAATA 59.443 47.619 0.00 0.00 0.00 1.75
121 122 0.327924 TGGGCTCCAACATGTCGAAT 59.672 50.000 0.00 0.00 0.00 3.34
122 123 0.605319 GTGGGCTCCAACATGTCGAA 60.605 55.000 0.00 0.00 34.18 3.71
123 124 1.003839 GTGGGCTCCAACATGTCGA 60.004 57.895 0.00 0.00 34.18 4.20
124 125 2.040544 GGTGGGCTCCAACATGTCG 61.041 63.158 0.00 0.00 41.64 4.35
125 126 1.678970 GGGTGGGCTCCAACATGTC 60.679 63.158 10.87 0.00 44.30 3.06
126 127 2.440599 GGGTGGGCTCCAACATGT 59.559 61.111 10.87 0.00 44.30 3.21
127 128 1.978617 GTGGGTGGGCTCCAACATG 60.979 63.158 10.87 0.00 44.30 3.21
128 129 1.803453 ATGTGGGTGGGCTCCAACAT 61.803 55.000 13.62 13.62 44.30 2.71
129 130 1.136961 TATGTGGGTGGGCTCCAACA 61.137 55.000 10.87 10.74 44.30 3.33
130 131 0.039035 TTATGTGGGTGGGCTCCAAC 59.961 55.000 0.89 0.89 41.21 3.77
131 132 0.780637 TTTATGTGGGTGGGCTCCAA 59.219 50.000 0.00 0.00 34.18 3.53
132 133 0.331278 CTTTATGTGGGTGGGCTCCA 59.669 55.000 2.29 0.00 0.00 3.86
133 134 0.331616 ACTTTATGTGGGTGGGCTCC 59.668 55.000 0.00 0.00 0.00 4.70
134 135 1.751437 GACTTTATGTGGGTGGGCTC 58.249 55.000 0.00 0.00 0.00 4.70
135 136 0.035439 CGACTTTATGTGGGTGGGCT 60.035 55.000 0.00 0.00 0.00 5.19
136 137 1.654023 GCGACTTTATGTGGGTGGGC 61.654 60.000 0.00 0.00 0.00 5.36
137 138 0.035439 AGCGACTTTATGTGGGTGGG 60.035 55.000 0.00 0.00 33.96 4.61
138 139 1.369625 GAGCGACTTTATGTGGGTGG 58.630 55.000 0.00 0.00 35.33 4.61
139 140 1.066143 AGGAGCGACTTTATGTGGGTG 60.066 52.381 0.00 0.00 35.33 4.61
140 141 1.207329 GAGGAGCGACTTTATGTGGGT 59.793 52.381 0.00 0.00 37.80 4.51
141 142 1.473434 GGAGGAGCGACTTTATGTGGG 60.473 57.143 0.00 0.00 0.00 4.61
142 143 1.482593 AGGAGGAGCGACTTTATGTGG 59.517 52.381 0.00 0.00 0.00 4.17
143 144 2.482142 GGAGGAGGAGCGACTTTATGTG 60.482 54.545 0.00 0.00 0.00 3.21
179 180 1.895238 CGAGAGGCGGAAACCCTAA 59.105 57.895 0.00 0.00 36.03 2.69
312 315 3.411446 TGAGCATGACACAAACCCTAAG 58.589 45.455 0.00 0.00 0.00 2.18
476 479 0.593263 GTGGACGAACAACGACGAGT 60.593 55.000 0.00 0.00 45.77 4.18
560 563 2.735772 ATAGGACCAGCGCACCAGG 61.736 63.158 11.47 8.53 0.00 4.45
581 584 0.109226 GAAGTCGTCGTGCTAAGGCT 60.109 55.000 0.00 0.00 39.59 4.58
715 718 9.719355 AAACACCAGAAATAAAAATTACATCCC 57.281 29.630 0.00 0.00 0.00 3.85
801 804 6.201425 TGTTGGTATCGTTTCAAAGTCACTAC 59.799 38.462 0.00 0.00 0.00 2.73
854 857 3.756963 GGAGGCGGATAAGTTCAAAAAGT 59.243 43.478 0.00 0.00 0.00 2.66
860 863 1.120530 GGAGGAGGCGGATAAGTTCA 58.879 55.000 0.00 0.00 0.00 3.18
948 952 8.789825 TTTTAATGGGTGATGAATGATTTTGG 57.210 30.769 0.00 0.00 0.00 3.28
1395 1434 3.083349 TCGGCATGGAGTGGAGGG 61.083 66.667 0.00 0.00 0.00 4.30
1433 1472 9.748708 TTTTAAAGATGGATTCACTTGAACAAG 57.251 29.630 12.22 12.22 43.79 3.16
1434 1473 9.748708 CTTTTAAAGATGGATTCACTTGAACAA 57.251 29.630 0.00 0.00 36.80 2.83
1461 1500 4.102524 ACTTGTGGGGATAATCGAAGCATA 59.897 41.667 0.00 0.00 0.00 3.14
1511 1551 7.151308 TCTTGCATTACCAATTTGACGATTTT 58.849 30.769 0.00 0.00 0.00 1.82
1512 1552 6.686630 TCTTGCATTACCAATTTGACGATTT 58.313 32.000 0.00 0.00 0.00 2.17
1517 1557 5.063817 GCCATTCTTGCATTACCAATTTGAC 59.936 40.000 0.00 0.00 0.00 3.18
1551 1591 4.673580 GCGTGAAAAAGTGAGATGCATCAT 60.674 41.667 27.81 13.31 0.00 2.45
1552 1592 3.365264 GCGTGAAAAAGTGAGATGCATCA 60.365 43.478 27.81 7.77 0.00 3.07
1553 1593 3.166657 GCGTGAAAAAGTGAGATGCATC 58.833 45.455 19.37 19.37 0.00 3.91
1554 1594 2.095059 GGCGTGAAAAAGTGAGATGCAT 60.095 45.455 0.00 0.00 0.00 3.96
1555 1595 1.266718 GGCGTGAAAAAGTGAGATGCA 59.733 47.619 0.00 0.00 0.00 3.96
1556 1596 1.401539 GGGCGTGAAAAAGTGAGATGC 60.402 52.381 0.00 0.00 0.00 3.91
1557 1597 1.879380 TGGGCGTGAAAAAGTGAGATG 59.121 47.619 0.00 0.00 0.00 2.90
1558 1598 2.154462 CTGGGCGTGAAAAAGTGAGAT 58.846 47.619 0.00 0.00 0.00 2.75
1559 1599 1.140052 TCTGGGCGTGAAAAAGTGAGA 59.860 47.619 0.00 0.00 0.00 3.27
1560 1600 1.264288 GTCTGGGCGTGAAAAAGTGAG 59.736 52.381 0.00 0.00 0.00 3.51
1569 1609 1.169661 ATTTTTGCGTCTGGGCGTGA 61.170 50.000 0.00 0.00 35.06 4.35
1570 1610 0.318614 AATTTTTGCGTCTGGGCGTG 60.319 50.000 0.00 0.00 35.06 5.34
1572 1612 2.339728 TTAATTTTTGCGTCTGGGCG 57.660 45.000 0.00 0.00 35.06 6.13
1573 1613 4.110036 AGATTAATTTTTGCGTCTGGGC 57.890 40.909 0.00 0.00 0.00 5.36
1574 1614 6.436843 AGTAGATTAATTTTTGCGTCTGGG 57.563 37.500 0.00 0.00 0.00 4.45
1577 1617 6.370718 ACGGAAGTAGATTAATTTTTGCGTCT 59.629 34.615 12.36 0.00 46.88 4.18
1610 1659 2.169832 TCAGGTCTCCGCTTTTCTTG 57.830 50.000 0.00 0.00 0.00 3.02
1642 1691 1.373246 CTGTGCACCAAATTGCCCG 60.373 57.895 15.69 0.00 42.25 6.13
1648 1697 1.412343 GGGAACAACTGTGCACCAAAT 59.588 47.619 15.69 0.00 0.00 2.32
1649 1698 0.820871 GGGAACAACTGTGCACCAAA 59.179 50.000 15.69 0.00 0.00 3.28
1681 1733 7.414540 CCAAAAGTAGAGTATTTTAGCAGCCTG 60.415 40.741 0.00 0.00 0.00 4.85
1731 1783 9.378551 TGGATATACAAACAGTGCTAAAAGTAG 57.621 33.333 0.00 0.00 0.00 2.57
1732 1784 9.899661 ATGGATATACAAACAGTGCTAAAAGTA 57.100 29.630 0.00 0.00 0.00 2.24
1733 1785 8.677300 CATGGATATACAAACAGTGCTAAAAGT 58.323 33.333 0.00 0.00 0.00 2.66
1734 1786 8.131100 CCATGGATATACAAACAGTGCTAAAAG 58.869 37.037 5.56 0.00 0.00 2.27
1735 1787 7.831690 TCCATGGATATACAAACAGTGCTAAAA 59.168 33.333 11.44 0.00 0.00 1.52
1736 1788 7.342581 TCCATGGATATACAAACAGTGCTAAA 58.657 34.615 11.44 0.00 0.00 1.85
1737 1789 6.894682 TCCATGGATATACAAACAGTGCTAA 58.105 36.000 11.44 0.00 0.00 3.09
1905 1965 0.320771 ACGAAGCTGCGTGGAGAAAT 60.321 50.000 21.61 0.00 43.79 2.17
1918 1978 2.293399 AGGACAAAAATCCACACGAAGC 59.707 45.455 0.00 0.00 41.73 3.86
1919 1979 4.568152 AAGGACAAAAATCCACACGAAG 57.432 40.909 0.00 0.00 41.73 3.79
1946 2006 7.118680 CGCTGGAACAAGAAAGGTTATTACTTA 59.881 37.037 0.00 0.00 38.70 2.24
1947 2007 6.072673 CGCTGGAACAAGAAAGGTTATTACTT 60.073 38.462 0.00 0.00 38.70 2.24
1948 2008 5.411669 CGCTGGAACAAGAAAGGTTATTACT 59.588 40.000 0.00 0.00 38.70 2.24
1949 2009 5.410439 TCGCTGGAACAAGAAAGGTTATTAC 59.590 40.000 0.00 0.00 38.70 1.89
2060 2128 3.971245 ATGAGTCCCAGTTCAGTCTTC 57.029 47.619 0.00 0.00 0.00 2.87
2079 2147 7.390718 AGCTTAGGATCGTGTTGTTTCTTTTAT 59.609 33.333 0.00 0.00 0.00 1.40
2094 2162 0.462581 TTGCCAGCAGCTTAGGATCG 60.463 55.000 2.83 0.00 44.23 3.69
2104 2172 3.119280 TCAATGATTGATGTTGCCAGCAG 60.119 43.478 3.29 0.00 38.40 4.24
2137 2205 0.250901 ACCGAGTTGCCAGCAAATCT 60.251 50.000 24.86 12.13 45.35 2.40
2138 2206 1.448985 TACCGAGTTGCCAGCAAATC 58.551 50.000 19.80 19.80 44.47 2.17
2139 2207 2.017049 GATACCGAGTTGCCAGCAAAT 58.983 47.619 6.64 5.72 37.70 2.32
2144 2212 1.369625 GTTGGATACCGAGTTGCCAG 58.630 55.000 0.00 0.00 0.00 4.85
2147 2215 1.713830 GCGTTGGATACCGAGTTGC 59.286 57.895 0.00 0.00 0.00 4.17
2148 2216 0.734942 ACGCGTTGGATACCGAGTTG 60.735 55.000 5.58 0.00 33.31 3.16
2149 2217 0.457337 GACGCGTTGGATACCGAGTT 60.457 55.000 15.53 0.00 37.23 3.01
2152 2220 2.491152 GGACGCGTTGGATACCGA 59.509 61.111 15.53 0.00 0.00 4.69
2160 2228 0.179084 ATGGTATCAGGGACGCGTTG 60.179 55.000 15.53 8.39 0.00 4.10
2163 2231 0.179084 AACATGGTATCAGGGACGCG 60.179 55.000 3.53 3.53 0.00 6.01
2171 2239 6.947733 AGGAAACAGAATCAAACATGGTATCA 59.052 34.615 0.00 0.00 0.00 2.15
2175 2243 4.895297 ACAGGAAACAGAATCAAACATGGT 59.105 37.500 0.00 0.00 0.00 3.55
2177 2245 6.142798 CGAAACAGGAAACAGAATCAAACATG 59.857 38.462 0.00 0.00 0.00 3.21
2186 2254 5.229921 CTGAAACGAAACAGGAAACAGAA 57.770 39.130 0.00 0.00 0.00 3.02
2202 2270 1.737008 GGCGACCTCGACCTGAAAC 60.737 63.158 0.00 0.00 42.67 2.78
2217 2285 3.002042 GCATTAGCAGCATATCATAGGCG 59.998 47.826 0.00 0.00 40.98 5.52
2382 2450 3.130160 CCCAAGCTGCTCGAAGCC 61.130 66.667 1.00 0.00 44.68 4.35
2457 2525 1.133253 CGCTGATGGCAAAGACGTG 59.867 57.895 0.00 0.00 41.91 4.49
2466 2534 0.876342 GGCTAGTGTACGCTGATGGC 60.876 60.000 19.20 15.74 37.64 4.40
2709 2779 5.990120 TTACAGAGGGAGTAGTTTGTACC 57.010 43.478 0.00 0.00 0.00 3.34
2710 2780 6.990798 AGTTTACAGAGGGAGTAGTTTGTAC 58.009 40.000 0.00 0.00 0.00 2.90
2878 2974 6.986817 GCAGAACTAGCCTTATCTTGTTGATA 59.013 38.462 0.00 0.00 36.65 2.15
2880 2976 5.046304 AGCAGAACTAGCCTTATCTTGTTGA 60.046 40.000 0.00 0.00 33.45 3.18
2942 3038 9.035607 CAGTTAAGGCTACAGATATAACAACAG 57.964 37.037 5.96 0.00 0.00 3.16
3120 3216 9.667107 TTAGCATACAAGTAACTCTTATTTGCT 57.333 29.630 8.31 8.31 41.65 3.91
3132 3228 5.190677 GGGCCTTTCTTAGCATACAAGTAA 58.809 41.667 0.84 0.00 0.00 2.24
3184 3280 4.211125 TCTCTGCTACTCATCCTTACAGG 58.789 47.826 0.00 0.00 36.46 4.00
3483 3580 8.621286 TGAAGATCTCTTTGAACCAAGTTTAAC 58.379 33.333 0.00 0.00 36.11 2.01
3484 3581 8.746052 TGAAGATCTCTTTGAACCAAGTTTAA 57.254 30.769 0.00 0.00 36.11 1.52
3485 3582 8.746052 TTGAAGATCTCTTTGAACCAAGTTTA 57.254 30.769 0.00 0.00 36.11 2.01
3486 3583 7.645058 TTGAAGATCTCTTTGAACCAAGTTT 57.355 32.000 0.00 0.00 36.11 2.66
3487 3584 7.201857 CCTTTGAAGATCTCTTTGAACCAAGTT 60.202 37.037 0.00 0.00 36.11 2.66
3488 3585 6.264067 CCTTTGAAGATCTCTTTGAACCAAGT 59.736 38.462 0.00 0.00 36.11 3.16
3489 3586 6.294397 CCCTTTGAAGATCTCTTTGAACCAAG 60.294 42.308 0.00 0.00 36.11 3.61
3490 3587 5.536161 CCCTTTGAAGATCTCTTTGAACCAA 59.464 40.000 0.00 0.00 36.11 3.67
3518 3647 6.316140 ACAATAGCTGAATTTGCTTCACGATA 59.684 34.615 11.25 0.00 38.97 2.92
3521 3650 4.726416 ACAATAGCTGAATTTGCTTCACG 58.274 39.130 11.25 0.00 38.97 4.35
3569 3714 4.167554 TGTTTTCACTCAAAAAGCGTGT 57.832 36.364 0.00 0.00 35.68 4.49
3573 3718 8.130307 ACATGTTATGTTTTCACTCAAAAAGC 57.870 30.769 0.00 0.00 41.63 3.51
3711 3858 6.319141 AGCAACTTGTAGAAGGAACAAATC 57.681 37.500 4.45 0.00 36.46 2.17
3712 3859 6.998673 ACTAGCAACTTGTAGAAGGAACAAAT 59.001 34.615 4.45 0.00 36.46 2.32
3715 3862 5.069914 TCACTAGCAACTTGTAGAAGGAACA 59.930 40.000 4.45 0.00 32.95 3.18
3716 3863 5.539048 TCACTAGCAACTTGTAGAAGGAAC 58.461 41.667 4.45 0.00 32.95 3.62
3717 3864 5.801531 TCACTAGCAACTTGTAGAAGGAA 57.198 39.130 4.45 0.00 32.95 3.36
3719 3866 5.297547 TGTTCACTAGCAACTTGTAGAAGG 58.702 41.667 4.45 0.00 32.95 3.46
3720 3867 6.844696 TTGTTCACTAGCAACTTGTAGAAG 57.155 37.500 0.00 0.00 35.07 2.85
3721 3868 6.596106 TGTTTGTTCACTAGCAACTTGTAGAA 59.404 34.615 6.69 0.00 0.00 2.10
3723 3870 6.358118 TGTTTGTTCACTAGCAACTTGTAG 57.642 37.500 6.69 0.00 0.00 2.74
3725 3872 4.438744 GCTGTTTGTTCACTAGCAACTTGT 60.439 41.667 6.69 0.00 34.64 3.16
3726 3873 4.037690 GCTGTTTGTTCACTAGCAACTTG 58.962 43.478 6.69 0.00 34.64 3.16
3727 3874 3.242739 CGCTGTTTGTTCACTAGCAACTT 60.243 43.478 6.69 0.00 34.16 2.66
3729 3876 2.286833 TCGCTGTTTGTTCACTAGCAAC 59.713 45.455 0.00 0.00 34.16 4.17
3730 3877 2.556257 TCGCTGTTTGTTCACTAGCAA 58.444 42.857 0.00 0.00 34.16 3.91
3733 3880 5.095691 ACAAATCGCTGTTTGTTCACTAG 57.904 39.130 9.65 0.00 46.96 2.57
3741 3888 3.963665 TGAAGGAACAAATCGCTGTTTG 58.036 40.909 8.57 8.57 39.63 2.93
3766 4342 9.872757 CTCTAACGTTCTTATCTTCAGATCTAC 57.127 37.037 2.82 0.00 36.05 2.59
3858 4434 9.453572 ACATATATACAAGGCATCAAACTATGG 57.546 33.333 0.00 0.00 0.00 2.74
3866 4442 6.389906 CACGAGACATATATACAAGGCATCA 58.610 40.000 0.00 0.00 0.00 3.07
3872 4448 7.382218 TGATGTTGCACGAGACATATATACAAG 59.618 37.037 1.78 0.00 36.67 3.16
3874 4450 6.640907 GTGATGTTGCACGAGACATATATACA 59.359 38.462 1.78 0.00 36.67 2.29
3875 4451 6.089551 GGTGATGTTGCACGAGACATATATAC 59.910 42.308 1.78 0.98 39.66 1.47
3876 4452 6.015434 AGGTGATGTTGCACGAGACATATATA 60.015 38.462 1.78 0.00 39.66 0.86
3877 4453 4.991056 GGTGATGTTGCACGAGACATATAT 59.009 41.667 1.78 0.00 39.66 0.86
3878 4454 4.099419 AGGTGATGTTGCACGAGACATATA 59.901 41.667 1.78 0.00 39.66 0.86
3879 4455 3.118629 AGGTGATGTTGCACGAGACATAT 60.119 43.478 1.78 0.00 39.66 1.78
3888 4464 6.640907 CCTAAACTAAAAAGGTGATGTTGCAC 59.359 38.462 0.00 0.00 38.05 4.57
4062 4638 3.516981 TGCAGTGTATCTCTCTGAAGC 57.483 47.619 0.00 0.00 39.24 3.86
4072 4648 3.119849 ACCGAATTTGCTTGCAGTGTATC 60.120 43.478 0.00 0.00 0.00 2.24
4192 4773 6.560003 TGGGCTCTTTTATCTTCAGATGTA 57.440 37.500 0.00 0.00 36.05 2.29
4193 4774 5.441718 TGGGCTCTTTTATCTTCAGATGT 57.558 39.130 0.00 0.00 36.05 3.06
4194 4775 5.241064 CCATGGGCTCTTTTATCTTCAGATG 59.759 44.000 2.85 0.00 36.05 2.90
4209 4790 1.133699 TGATTGTGGATCCATGGGCTC 60.134 52.381 19.62 11.12 33.60 4.70
4254 4835 3.080765 ACGCCCGTCCCATGATCA 61.081 61.111 0.00 0.00 0.00 2.92
4263 4844 1.201880 GGATATCTAAGGACGCCCGTC 59.798 57.143 12.07 12.07 43.87 4.79
4264 4845 1.254954 GGATATCTAAGGACGCCCGT 58.745 55.000 2.05 0.00 37.58 5.28
4265 4846 1.067776 GTGGATATCTAAGGACGCCCG 60.068 57.143 2.05 0.00 37.58 6.13
4266 4847 1.275573 GGTGGATATCTAAGGACGCCC 59.724 57.143 2.05 0.00 0.00 6.13
4269 4855 1.067776 GGCGGTGGATATCTAAGGACG 60.068 57.143 2.05 1.58 0.00 4.79
4272 4858 3.771577 AAAGGCGGTGGATATCTAAGG 57.228 47.619 2.05 0.00 0.00 2.69
4283 4869 5.783100 TTAAATACGAACTAAAGGCGGTG 57.217 39.130 0.00 0.00 0.00 4.94
4286 4872 6.195798 GCCAAATTAAATACGAACTAAAGGCG 59.804 38.462 0.00 0.00 0.00 5.52
4288 4874 7.768240 AGGCCAAATTAAATACGAACTAAAGG 58.232 34.615 5.01 0.00 0.00 3.11
4293 4879 8.567948 CATGATAGGCCAAATTAAATACGAACT 58.432 33.333 5.01 0.00 0.00 3.01
4295 4881 7.013750 TGCATGATAGGCCAAATTAAATACGAA 59.986 33.333 5.01 0.00 0.00 3.85
4297 4883 6.676950 TGCATGATAGGCCAAATTAAATACG 58.323 36.000 5.01 0.00 0.00 3.06
4301 4887 4.650588 AGCTGCATGATAGGCCAAATTAAA 59.349 37.500 5.01 0.00 0.00 1.52
4302 4888 4.217510 AGCTGCATGATAGGCCAAATTAA 58.782 39.130 5.01 0.00 0.00 1.40
4303 4889 3.836146 AGCTGCATGATAGGCCAAATTA 58.164 40.909 5.01 0.00 0.00 1.40
4304 4890 2.674420 AGCTGCATGATAGGCCAAATT 58.326 42.857 5.01 0.00 0.00 1.82
4306 4892 3.513909 ATAGCTGCATGATAGGCCAAA 57.486 42.857 5.01 0.00 0.00 3.28
4308 4894 3.513909 AAATAGCTGCATGATAGGCCA 57.486 42.857 5.01 0.00 0.00 5.36
4309 4895 5.884792 AGATAAAATAGCTGCATGATAGGCC 59.115 40.000 1.02 0.00 0.00 5.19
4310 4896 6.822676 AGAGATAAAATAGCTGCATGATAGGC 59.177 38.462 1.02 0.00 0.00 3.93
4311 4897 8.789825 AAGAGATAAAATAGCTGCATGATAGG 57.210 34.615 1.02 0.00 0.00 2.57
4314 4900 9.790344 AGTAAAGAGATAAAATAGCTGCATGAT 57.210 29.630 1.02 0.00 0.00 2.45
4347 4933 7.398024 ACTTTAAAGACAGCATATCCAAGAGT 58.602 34.615 21.92 0.00 0.00 3.24
4348 4934 7.856145 ACTTTAAAGACAGCATATCCAAGAG 57.144 36.000 21.92 0.00 0.00 2.85
4392 4978 2.697229 TGTGTCAGCCAGATAGATCCAG 59.303 50.000 0.00 0.00 0.00 3.86
4415 5001 0.038744 CAGGTTGGAGGCTTGTGGAT 59.961 55.000 0.00 0.00 0.00 3.41
4423 5009 0.032540 CACAAAAGCAGGTTGGAGGC 59.967 55.000 0.00 0.00 0.00 4.70
4544 5130 2.165030 GGACCACTGAGGCATTCATTTG 59.835 50.000 0.00 0.00 43.14 2.32
4558 5144 1.546323 CCTGCATGAACAAGGACCACT 60.546 52.381 0.00 0.00 0.00 4.00
4588 5174 4.530857 CCCCCGACGGTGATCAGC 62.531 72.222 15.01 15.01 0.00 4.26
4589 5175 4.530857 GCCCCCGACGGTGATCAG 62.531 72.222 13.94 0.00 0.00 2.90
4708 5294 4.094212 GCAATTGCGAGAAGAGAATGAAC 58.906 43.478 15.87 0.00 0.00 3.18
4730 5316 1.060713 CTAACGAACAGCGACACCAG 58.939 55.000 0.00 0.00 44.57 4.00
4760 5346 2.583593 GACGGCTTAGCTCGCCTG 60.584 66.667 20.77 16.71 45.37 4.85
4761 5347 3.068691 TGACGGCTTAGCTCGCCT 61.069 61.111 20.77 10.65 45.37 5.52
4774 5360 2.510238 GCTACAGGCCAGCTGACG 60.510 66.667 17.39 0.00 36.07 4.35
4790 5377 2.798976 TGCACCATTTTTCAGTCAGC 57.201 45.000 0.00 0.00 0.00 4.26
4815 5402 2.668212 CTGCACCTTCCGCGGAAA 60.668 61.111 37.62 23.40 38.03 3.13
4816 5403 3.621805 TCTGCACCTTCCGCGGAA 61.622 61.111 36.44 36.44 41.73 4.30
4820 5407 2.563427 GCTTTCTGCACCTTCCGC 59.437 61.111 0.00 0.00 42.31 5.54
4832 5419 4.656041 CTTTGCTATACACAGCTGCTTTC 58.344 43.478 15.27 0.00 42.30 2.62
4851 5438 4.440112 GCTGTGGTACTGTTTTTCTGCTTT 60.440 41.667 0.00 0.00 0.00 3.51
4852 5439 3.066760 GCTGTGGTACTGTTTTTCTGCTT 59.933 43.478 0.00 0.00 0.00 3.91
4853 5440 2.618709 GCTGTGGTACTGTTTTTCTGCT 59.381 45.455 0.00 0.00 0.00 4.24
4854 5441 2.602217 CGCTGTGGTACTGTTTTTCTGC 60.602 50.000 0.00 0.00 0.00 4.26
4855 5442 2.032030 CCGCTGTGGTACTGTTTTTCTG 60.032 50.000 0.00 0.00 0.00 3.02
4856 5443 2.218603 CCGCTGTGGTACTGTTTTTCT 58.781 47.619 0.00 0.00 0.00 2.52
4857 5444 1.265905 CCCGCTGTGGTACTGTTTTTC 59.734 52.381 6.49 0.00 35.15 2.29
4869 5456 0.034059 GGATGTAGATCCCCGCTGTG 59.966 60.000 7.71 0.00 42.42 3.66
4884 5471 6.825213 TGATGATTGAAGAAGTACAAGGGATG 59.175 38.462 0.00 0.00 0.00 3.51
4885 5472 6.825721 GTGATGATTGAAGAAGTACAAGGGAT 59.174 38.462 0.00 0.00 0.00 3.85
4895 5482 8.763356 GCTAGATACAAGTGATGATTGAAGAAG 58.237 37.037 0.00 0.00 0.00 2.85
4896 5483 7.712639 GGCTAGATACAAGTGATGATTGAAGAA 59.287 37.037 0.00 0.00 0.00 2.52
4897 5484 7.070447 AGGCTAGATACAAGTGATGATTGAAGA 59.930 37.037 0.00 0.00 0.00 2.87
4926 5513 1.004918 AACGAAACCGGGCAGAGAG 60.005 57.895 6.32 0.00 0.00 3.20
4931 5518 2.662527 GACGAACGAAACCGGGCA 60.663 61.111 6.32 0.00 0.00 5.36
4937 5532 1.484232 CCGAACCGACGAACGAAAC 59.516 57.895 0.00 0.00 45.77 2.78
4942 5537 2.426122 AAGGACCCGAACCGACGAAC 62.426 60.000 0.00 0.00 35.09 3.95
4945 5540 2.025418 CAAAGGACCCGAACCGACG 61.025 63.158 0.00 0.00 0.00 5.12
4956 5551 0.383949 TCCAAACAAGCGCAAAGGAC 59.616 50.000 11.47 0.00 0.00 3.85
4958 5553 0.667993 TCTCCAAACAAGCGCAAAGG 59.332 50.000 11.47 2.26 0.00 3.11
4962 5557 1.317613 ACAATCTCCAAACAAGCGCA 58.682 45.000 11.47 0.00 0.00 6.09
4965 5560 2.867647 GCCCAACAATCTCCAAACAAGC 60.868 50.000 0.00 0.00 0.00 4.01
4976 5571 1.203052 CACAGTCCATGCCCAACAATC 59.797 52.381 0.00 0.00 0.00 2.67
4982 5577 3.457749 TGATATAACACAGTCCATGCCCA 59.542 43.478 0.00 0.00 0.00 5.36
4984 5579 4.456911 CCATGATATAACACAGTCCATGCC 59.543 45.833 0.00 0.00 31.37 4.40
4986 5581 7.991084 AATCCATGATATAACACAGTCCATG 57.009 36.000 0.00 0.00 0.00 3.66
4987 5582 7.388776 CGAAATCCATGATATAACACAGTCCAT 59.611 37.037 0.00 0.00 0.00 3.41
4988 5583 6.705825 CGAAATCCATGATATAACACAGTCCA 59.294 38.462 0.00 0.00 0.00 4.02
4989 5584 6.147821 CCGAAATCCATGATATAACACAGTCC 59.852 42.308 0.00 0.00 0.00 3.85
4990 5585 6.147821 CCCGAAATCCATGATATAACACAGTC 59.852 42.308 0.00 0.00 0.00 3.51
4991 5586 5.997746 CCCGAAATCCATGATATAACACAGT 59.002 40.000 0.00 0.00 0.00 3.55
4992 5587 5.106555 GCCCGAAATCCATGATATAACACAG 60.107 44.000 0.00 0.00 0.00 3.66
4995 5590 4.000325 CGCCCGAAATCCATGATATAACA 59.000 43.478 0.00 0.00 0.00 2.41
4996 5591 4.250464 TCGCCCGAAATCCATGATATAAC 58.750 43.478 0.00 0.00 0.00 1.89
4997 5592 4.545208 TCGCCCGAAATCCATGATATAA 57.455 40.909 0.00 0.00 0.00 0.98
4999 5594 3.417069 TTCGCCCGAAATCCATGATAT 57.583 42.857 0.00 0.00 0.00 1.63
5001 5596 2.051334 TTTCGCCCGAAATCCATGAT 57.949 45.000 11.38 0.00 38.95 2.45
5003 5598 1.472480 AGTTTTCGCCCGAAATCCATG 59.528 47.619 15.50 0.00 42.71 3.66
5004 5599 1.743394 GAGTTTTCGCCCGAAATCCAT 59.257 47.619 15.50 3.82 42.71 3.41
5006 5601 0.096454 CGAGTTTTCGCCCGAAATCC 59.904 55.000 15.50 9.98 42.71 3.01
5017 5612 3.125573 GCGGGAGGGCGAGTTTTC 61.126 66.667 0.00 0.00 0.00 2.29
5018 5613 4.717313 GGCGGGAGGGCGAGTTTT 62.717 66.667 0.00 0.00 0.00 2.43
5026 5621 3.886550 AAAGGCTTTGGCGGGAGGG 62.887 63.158 12.53 0.00 39.81 4.30
5027 5622 2.283173 AAAGGCTTTGGCGGGAGG 60.283 61.111 12.53 0.00 39.81 4.30
5028 5623 2.690778 CGAAAGGCTTTGGCGGGAG 61.691 63.158 18.79 0.00 39.81 4.30
5029 5624 2.671619 CGAAAGGCTTTGGCGGGA 60.672 61.111 18.79 0.00 39.81 5.14
5030 5625 4.419939 GCGAAAGGCTTTGGCGGG 62.420 66.667 27.08 8.72 39.81 6.13
5044 5818 1.003476 TGCATTCAAGGCTCAGCGA 60.003 52.632 0.00 0.00 0.00 4.93
5046 5820 1.139095 GCTGCATTCAAGGCTCAGC 59.861 57.895 7.71 7.71 42.46 4.26
5053 5827 3.655276 AAACCTTCAGCTGCATTCAAG 57.345 42.857 9.47 6.99 0.00 3.02
5079 5853 5.931146 AGTAAATCTTGCTGATGATCGATCC 59.069 40.000 22.31 8.72 35.21 3.36
5080 5854 6.867816 AGAGTAAATCTTGCTGATGATCGATC 59.132 38.462 18.72 18.72 32.99 3.69
5081 5855 6.757237 AGAGTAAATCTTGCTGATGATCGAT 58.243 36.000 0.00 0.00 32.99 3.59
5083 5857 6.841443 AAGAGTAAATCTTGCTGATGATCG 57.159 37.500 0.00 0.00 46.80 3.69
5100 5874 9.930693 GGAAATCTTCTTCTGAGTTAAAGAGTA 57.069 33.333 0.00 0.00 33.32 2.59
5101 5875 8.655901 AGGAAATCTTCTTCTGAGTTAAAGAGT 58.344 33.333 0.00 0.00 33.32 3.24
5104 5878 9.890352 CAAAGGAAATCTTCTTCTGAGTTAAAG 57.110 33.333 0.00 0.00 33.94 1.85
5105 5879 8.352942 GCAAAGGAAATCTTCTTCTGAGTTAAA 58.647 33.333 0.00 0.00 33.94 1.52
5108 5882 5.829924 TGCAAAGGAAATCTTCTTCTGAGTT 59.170 36.000 0.00 0.00 33.94 3.01
5109 5883 5.380043 TGCAAAGGAAATCTTCTTCTGAGT 58.620 37.500 0.00 0.00 33.94 3.41
5110 5884 5.954296 TGCAAAGGAAATCTTCTTCTGAG 57.046 39.130 0.00 0.00 33.94 3.35
5169 6198 0.605319 ACTTCGCCTGAAATTCGGCA 60.605 50.000 21.72 10.97 46.62 5.69
5171 6200 1.135689 CCAACTTCGCCTGAAATTCGG 60.136 52.381 0.00 0.00 32.66 4.30
5189 6218 1.213619 TCTTCCATGGGTGCCATCCA 61.214 55.000 13.02 0.00 43.15 3.41
5204 6453 4.398319 TCAAAGGTCCCAATTGTCTCTTC 58.602 43.478 4.43 0.00 0.00 2.87
5205 6454 4.453480 TCAAAGGTCCCAATTGTCTCTT 57.547 40.909 4.43 0.33 0.00 2.85
5219 6468 2.037847 GGCCTGGGCATCAAAGGT 59.962 61.111 16.34 0.00 44.11 3.50
5236 6485 2.715749 TAGCTTGGATCACACCCATG 57.284 50.000 0.00 0.00 33.04 3.66
5257 6506 5.964477 TCCAACAGAATTAGGTCCAGACTAT 59.036 40.000 0.00 0.00 0.00 2.12
5264 6513 4.878397 CACTCATCCAACAGAATTAGGTCC 59.122 45.833 0.00 0.00 0.00 4.46
5377 6627 1.876497 ATGGTTTGGTGCCGACATGC 61.876 55.000 0.00 0.00 0.00 4.06
5426 6676 2.029838 ATCGGATGAACTTGGACTGC 57.970 50.000 0.00 0.00 0.00 4.40
5491 6742 2.270986 GCCTTGGCTTGACCCTGTG 61.271 63.158 4.11 0.00 37.83 3.66
5509 6760 3.551887 GAAAACCGGGTGCTTGGCG 62.552 63.158 6.32 0.00 0.00 5.69
5514 6766 2.663852 CGTCGAAAACCGGGTGCT 60.664 61.111 6.32 0.00 39.14 4.40
5541 6793 2.104170 AGTCCGTCTTCTTCCATCTCC 58.896 52.381 0.00 0.00 0.00 3.71
5567 6819 1.810030 ATCGCCGTCTCTTTTCGCC 60.810 57.895 0.00 0.00 0.00 5.54
5568 6820 1.345176 CATCGCCGTCTCTTTTCGC 59.655 57.895 0.00 0.00 0.00 4.70
5569 6821 1.059264 GAACATCGCCGTCTCTTTTCG 59.941 52.381 0.00 0.00 0.00 3.46
5610 6862 1.358830 CCAATGAGGGAGGAGGGCAT 61.359 60.000 0.00 0.00 0.00 4.40
5613 6865 4.838307 TCCAATGAGGGAGGAGGG 57.162 61.111 0.00 0.00 38.24 4.30
5639 6891 6.547510 CCCCTTTGTTCTTTTATCTATCCCTG 59.452 42.308 0.00 0.00 0.00 4.45
5680 6933 2.858158 GTGGCGACGCAAACCTAC 59.142 61.111 23.09 2.35 41.67 3.18
5681 6934 2.735478 CGTGGCGACGCAAACCTA 60.735 61.111 23.09 0.00 42.37 3.08
5684 6937 2.961669 ATTCCGTGGCGACGCAAAC 61.962 57.895 23.09 17.50 44.68 2.93
5685 6938 2.666862 ATTCCGTGGCGACGCAAA 60.667 55.556 23.09 12.20 44.68 3.68
5770 7024 0.887836 TGCTTCCTGCTGCTGTGAAG 60.888 55.000 21.72 21.72 43.37 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.