Multiple sequence alignment - TraesCS4B01G334500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G334500 chr4B 100.000 4312 0 0 1 4312 625379655 625383966 0.000000e+00 7963.0
1 TraesCS4B01G334500 chr4B 93.373 1177 54 13 2566 3723 625401601 625402772 0.000000e+00 1720.0
2 TraesCS4B01G334500 chr4B 95.992 948 34 3 1624 2571 367878481 367879424 0.000000e+00 1537.0
3 TraesCS4B01G334500 chr4B 94.667 675 29 1 957 1624 625400941 625401615 0.000000e+00 1040.0
4 TraesCS4B01G334500 chr4B 79.427 768 131 16 2572 3312 625531382 625532149 6.390000e-143 518.0
5 TraesCS4B01G334500 chr4B 93.750 336 13 5 3977 4308 625402918 625403249 8.330000e-137 497.0
6 TraesCS4B01G334500 chr4B 78.571 756 129 20 2572 3312 625297277 625298014 6.530000e-128 468.0
7 TraesCS4B01G334500 chr4B 89.544 373 27 4 3440 3805 625511449 625511816 3.040000e-126 462.0
8 TraesCS4B01G334500 chr4B 90.840 262 21 1 3900 4161 625527750 625528008 8.870000e-92 348.0
9 TraesCS4B01G334500 chr4B 92.308 169 6 1 4151 4312 625529678 625529846 2.590000e-57 233.0
10 TraesCS4B01G334500 chr4B 90.714 140 8 2 3307 3442 625498613 625498751 9.530000e-42 182.0
11 TraesCS4B01G334500 chr4B 85.185 108 14 1 4205 4312 625228068 625228173 4.560000e-20 110.0
12 TraesCS4B01G334500 chr4B 84.615 65 7 3 4165 4226 626004543 626004607 1.290000e-05 62.1
13 TraesCS4B01G334500 chr4D 90.783 1660 107 17 2 1623 488512969 488514620 0.000000e+00 2176.0
14 TraesCS4B01G334500 chr4D 91.091 1302 80 19 2572 3846 488514613 488515905 0.000000e+00 1729.0
15 TraesCS4B01G334500 chr4D 84.755 774 65 29 2993 3723 488605449 488606212 0.000000e+00 726.0
16 TraesCS4B01G334500 chr4D 81.641 768 114 15 2572 3312 488608180 488608947 2.850000e-171 612.0
17 TraesCS4B01G334500 chr4D 91.879 431 26 5 3884 4309 488515862 488516288 1.030000e-165 593.0
18 TraesCS4B01G334500 chr4D 80.340 824 124 17 822 1623 488607380 488608187 1.340000e-164 590.0
19 TraesCS4B01G334500 chr4D 91.204 432 38 0 2574 3005 488517770 488518201 4.800000e-164 588.0
20 TraesCS4B01G334500 chr4D 84.354 147 14 5 4174 4311 488511767 488511913 7.520000e-28 135.0
21 TraesCS4B01G334500 chr2A 99.688 962 1 2 1612 2571 347830172 347829211 0.000000e+00 1759.0
22 TraesCS4B01G334500 chr2A 79.389 131 10 11 1623 1750 776175808 776175692 4.620000e-10 76.8
23 TraesCS4B01G334500 chr3A 100.000 950 0 0 1624 2573 721822288 721823237 0.000000e+00 1755.0
24 TraesCS4B01G334500 chr7A 96.249 933 35 0 1639 2571 586067187 586068119 0.000000e+00 1530.0
25 TraesCS4B01G334500 chr7A 78.799 783 118 27 2572 3312 19547031 19546255 2.330000e-132 483.0
26 TraesCS4B01G334500 chr7A 77.649 774 131 32 2572 3312 125278132 125278896 2.380000e-117 433.0
27 TraesCS4B01G334500 chr7A 78.612 706 89 35 1624 2292 733264234 733264914 1.120000e-110 411.0
28 TraesCS4B01G334500 chr7A 77.839 546 93 20 1066 1606 125277591 125278113 3.240000e-81 313.0
29 TraesCS4B01G334500 chr7A 92.273 220 15 2 2355 2573 733264934 733265152 1.160000e-80 311.0
30 TraesCS4B01G334500 chr7A 75.394 508 100 16 1083 1585 19547555 19547068 5.610000e-54 222.0
31 TraesCS4B01G334500 chr7A 100.000 28 0 0 1624 1651 732993071 732993044 8.000000e-03 52.8
32 TraesCS4B01G334500 chr5A 89.317 1245 92 19 2572 3798 670401417 670402638 0.000000e+00 1524.0
33 TraesCS4B01G334500 chr5A 84.122 655 92 9 975 1620 670344875 670345526 1.320000e-174 623.0
34 TraesCS4B01G334500 chr5A 80.291 756 119 13 2572 3312 670345522 670346262 1.050000e-150 544.0
35 TraesCS4B01G334500 chr5A 92.918 353 25 0 1271 1623 670401072 670401424 8.270000e-142 514.0
36 TraesCS4B01G334500 chr5A 88.991 327 21 4 3987 4312 670403751 670404063 1.450000e-104 390.0
37 TraesCS4B01G334500 chr5A 90.698 258 15 2 3406 3659 670273209 670273461 6.910000e-88 335.0
38 TraesCS4B01G334500 chr5A 83.077 390 44 12 3944 4312 670341229 670341617 6.910000e-88 335.0
39 TraesCS4B01G334500 chr5A 89.051 274 18 5 3539 3805 670341784 670342052 3.210000e-86 329.0
40 TraesCS4B01G334500 chr5A 86.992 246 18 3 4065 4309 670343556 670343788 9.190000e-67 265.0
41 TraesCS4B01G334500 chr5A 94.318 88 3 2 3987 4073 670343318 670343404 2.710000e-27 134.0
42 TraesCS4B01G334500 chr7B 81.043 997 118 36 1623 2571 78172835 78171862 0.000000e+00 728.0
43 TraesCS4B01G334500 chr7B 89.220 436 21 9 2139 2573 328805695 328806105 4.940000e-144 521.0
44 TraesCS4B01G334500 chr7B 85.112 356 29 7 1622 1953 328805254 328805609 4.130000e-90 342.0
45 TraesCS4B01G334500 chr7B 83.862 347 38 8 1646 1988 23742156 23742488 9.000000e-82 315.0
46 TraesCS4B01G334500 chr7B 83.862 347 38 8 1646 1988 23803822 23804154 9.000000e-82 315.0
47 TraesCS4B01G334500 chr7B 77.903 534 96 15 1066 1597 82444888 82445401 3.240000e-81 313.0
48 TraesCS4B01G334500 chr3B 79.706 680 81 35 1636 2283 225254519 225253865 5.120000e-119 438.0
49 TraesCS4B01G334500 chr3B 93.607 219 12 2 2355 2572 225253836 225253619 4.160000e-85 326.0
50 TraesCS4B01G334500 chr2B 83.461 393 47 9 1624 2000 93930378 93929988 2.470000e-92 350.0
51 TraesCS4B01G334500 chr2B 73.456 761 142 51 2585 3312 47840248 47839515 9.330000e-57 231.0
52 TraesCS4B01G334500 chr4A 75.549 683 136 19 957 1622 731255004 731255672 1.510000e-79 307.0
53 TraesCS4B01G334500 chrUn 86.063 287 37 3 2286 2571 88502412 88502696 5.420000e-79 305.0
54 TraesCS4B01G334500 chrUn 79.823 451 55 22 1872 2306 94110624 94110194 3.260000e-76 296.0
55 TraesCS4B01G334500 chr1B 91.189 227 17 3 2355 2580 675276893 675277117 5.420000e-79 305.0
56 TraesCS4B01G334500 chr1B 94.857 175 9 0 1621 1795 2750533 2750707 1.530000e-69 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G334500 chr4B 625379655 625383966 4311 False 7963.000000 7963 100.000000 1 4312 1 chr4B.!!$F4 4311
1 TraesCS4B01G334500 chr4B 367878481 367879424 943 False 1537.000000 1537 95.992000 1624 2571 1 chr4B.!!$F1 947
2 TraesCS4B01G334500 chr4B 625400941 625403249 2308 False 1085.666667 1720 93.930000 957 4308 3 chr4B.!!$F8 3351
3 TraesCS4B01G334500 chr4B 625297277 625298014 737 False 468.000000 468 78.571000 2572 3312 1 chr4B.!!$F3 740
4 TraesCS4B01G334500 chr4B 625527750 625532149 4399 False 366.333333 518 87.525000 2572 4312 3 chr4B.!!$F9 1740
5 TraesCS4B01G334500 chr4D 488511767 488518201 6434 False 1044.200000 2176 89.862200 2 4311 5 chr4D.!!$F1 4309
6 TraesCS4B01G334500 chr4D 488605449 488608947 3498 False 642.666667 726 82.245333 822 3723 3 chr4D.!!$F2 2901
7 TraesCS4B01G334500 chr2A 347829211 347830172 961 True 1759.000000 1759 99.688000 1612 2571 1 chr2A.!!$R1 959
8 TraesCS4B01G334500 chr3A 721822288 721823237 949 False 1755.000000 1755 100.000000 1624 2573 1 chr3A.!!$F1 949
9 TraesCS4B01G334500 chr7A 586067187 586068119 932 False 1530.000000 1530 96.249000 1639 2571 1 chr7A.!!$F1 932
10 TraesCS4B01G334500 chr7A 125277591 125278896 1305 False 373.000000 433 77.744000 1066 3312 2 chr7A.!!$F2 2246
11 TraesCS4B01G334500 chr7A 733264234 733265152 918 False 361.000000 411 85.442500 1624 2573 2 chr7A.!!$F3 949
12 TraesCS4B01G334500 chr7A 19546255 19547555 1300 True 352.500000 483 77.096500 1083 3312 2 chr7A.!!$R2 2229
13 TraesCS4B01G334500 chr5A 670401072 670404063 2991 False 809.333333 1524 90.408667 1271 4312 3 chr5A.!!$F3 3041
14 TraesCS4B01G334500 chr5A 670341229 670346262 5033 False 371.666667 623 86.308500 975 4312 6 chr5A.!!$F2 3337
15 TraesCS4B01G334500 chr7B 78171862 78172835 973 True 728.000000 728 81.043000 1623 2571 1 chr7B.!!$R1 948
16 TraesCS4B01G334500 chr7B 328805254 328806105 851 False 431.500000 521 87.166000 1622 2573 2 chr7B.!!$F4 951
17 TraesCS4B01G334500 chr7B 82444888 82445401 513 False 313.000000 313 77.903000 1066 1597 1 chr7B.!!$F3 531
18 TraesCS4B01G334500 chr3B 225253619 225254519 900 True 382.000000 438 86.656500 1636 2572 2 chr3B.!!$R1 936
19 TraesCS4B01G334500 chr2B 47839515 47840248 733 True 231.000000 231 73.456000 2585 3312 1 chr2B.!!$R1 727
20 TraesCS4B01G334500 chr4A 731255004 731255672 668 False 307.000000 307 75.549000 957 1622 1 chr4A.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 1253 0.889186 GGGTGGACACATTGCGTTCT 60.889 55.0 4.69 0.0 0.0 3.01 F
1520 5216 0.391130 GGCGACAACTCCTGCATGTA 60.391 55.0 0.00 0.0 0.0 2.29 F
2574 6367 0.098376 CGTACGTCCAGTCCTAGTGC 59.902 60.0 7.22 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 5269 0.178990 GCCTGTTGGAAGGTGAAGGT 60.179 55.0 0.00 0.00 39.75 3.50 R
3176 7044 0.390603 CGGAACCTATCACCACGCAA 60.391 55.0 0.00 0.00 0.00 4.85 R
4144 9152 0.106569 TTCCATATGGCCAGCTGGTG 60.107 55.0 32.81 22.04 37.57 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 1253 0.889186 GGGTGGACACATTGCGTTCT 60.889 55.000 4.69 0.00 0.00 3.01
121 1323 5.755409 ATCAAGGTGATACAACCACACTA 57.245 39.130 0.00 0.00 43.20 2.74
168 1370 1.695242 AGAATCACGTACCCCAACACA 59.305 47.619 0.00 0.00 0.00 3.72
188 1392 4.211794 CACATCCACAAAAACAAGCATTCC 59.788 41.667 0.00 0.00 0.00 3.01
244 1448 5.986741 TCAATAAGCCTTAATGAACGCGATA 59.013 36.000 15.93 0.00 0.00 2.92
299 1503 0.899717 GCAATGGCCACCCTGAAAGA 60.900 55.000 8.16 0.00 34.07 2.52
338 1542 5.447818 CCTTGGCTTTCTTAAATAGAGCACG 60.448 44.000 0.00 0.00 33.51 5.34
443 1647 0.935196 GAACGGTGTTGACGAAAGCT 59.065 50.000 0.00 0.00 34.93 3.74
451 1655 1.710103 TTGACGAAAGCTTGCGTGCA 61.710 50.000 36.33 27.28 41.34 4.57
510 1714 2.764128 GTCTCCGCCCCTGATGGA 60.764 66.667 0.00 0.00 35.39 3.41
551 1779 3.686622 GCATCTAGCAATGGTCCGA 57.313 52.632 0.00 0.00 44.79 4.55
552 1780 1.953559 GCATCTAGCAATGGTCCGAA 58.046 50.000 0.00 0.00 44.79 4.30
554 1782 2.880890 GCATCTAGCAATGGTCCGAAAT 59.119 45.455 0.00 0.00 44.79 2.17
652 1883 3.575630 TCGAGTGTCTATTTCTGTGCAC 58.424 45.455 10.75 10.75 0.00 4.57
656 1887 4.645535 AGTGTCTATTTCTGTGCACACAT 58.354 39.130 17.42 10.80 41.01 3.21
665 1896 1.002430 CTGTGCACACATGAGTACCCT 59.998 52.381 17.42 0.00 41.01 4.34
690 1921 2.482721 CACGAATTTAGGGTGTGTGGAC 59.517 50.000 0.00 0.00 0.00 4.02
716 1947 8.682016 CGTCAATTTCTTCAAATAAGAACACAC 58.318 33.333 0.00 0.00 36.14 3.82
775 2006 7.965107 GCTTGAATGAGTATTCTTCAAATCGTT 59.035 33.333 11.24 0.00 42.56 3.85
776 2007 9.831737 CTTGAATGAGTATTCTTCAAATCGTTT 57.168 29.630 11.24 0.00 42.56 3.60
900 2139 4.692228 TGGATCTTTTTGCAAAGTTGACC 58.308 39.130 12.41 14.08 40.47 4.02
912 2151 4.228567 TTGACCTGCACGCCGTCA 62.229 61.111 5.26 5.26 34.80 4.35
914 2153 4.961511 GACCTGCACGCCGTCACA 62.962 66.667 0.00 0.00 0.00 3.58
935 2174 9.900710 GTCACACTATATATAACTCCAACTCAG 57.099 37.037 0.00 0.00 0.00 3.35
954 2193 3.196469 TCAGCAACATCCTAGTCCTCAAG 59.804 47.826 0.00 0.00 0.00 3.02
1110 4784 4.498520 CGCCTCGACCTCACGCAT 62.499 66.667 0.00 0.00 0.00 4.73
1492 5188 3.453679 GCTTCTCGCTCTCCGGGT 61.454 66.667 0.00 0.00 38.93 5.28
1494 5190 3.708220 CTTCTCGCTCTCCGGGTGC 62.708 68.421 0.00 4.18 38.93 5.01
1514 5210 1.734477 CAGTCGGCGACAACTCCTG 60.734 63.158 37.71 23.63 34.60 3.86
1516 5212 3.611674 TCGGCGACAACTCCTGCA 61.612 61.111 4.99 0.00 0.00 4.41
1517 5213 2.434884 CGGCGACAACTCCTGCAT 60.435 61.111 0.00 0.00 0.00 3.96
1518 5214 2.743752 CGGCGACAACTCCTGCATG 61.744 63.158 0.00 0.00 0.00 4.06
1520 5216 0.391130 GGCGACAACTCCTGCATGTA 60.391 55.000 0.00 0.00 0.00 2.29
1522 5218 1.939381 GCGACAACTCCTGCATGTACA 60.939 52.381 0.00 0.00 0.00 2.90
1523 5219 1.726791 CGACAACTCCTGCATGTACAC 59.273 52.381 0.00 0.00 0.00 2.90
1526 5222 0.973632 AACTCCTGCATGTACACCGA 59.026 50.000 0.00 0.00 0.00 4.69
1529 5225 0.530744 TCCTGCATGTACACCGACTC 59.469 55.000 0.00 0.00 0.00 3.36
1534 5230 1.533338 GCATGTACACCGACTCCTACG 60.533 57.143 0.00 0.00 0.00 3.51
1540 5236 3.991999 CCGACTCCTACGGTGACA 58.008 61.111 0.00 0.00 44.57 3.58
1543 5239 0.879765 CGACTCCTACGGTGACAACT 59.120 55.000 0.00 0.00 0.00 3.16
1544 5240 1.135746 CGACTCCTACGGTGACAACTC 60.136 57.143 0.00 0.00 0.00 3.01
1564 5260 2.915659 TCACGACGGGGAAGCTGT 60.916 61.111 0.00 0.00 0.00 4.40
1565 5261 1.604308 TCACGACGGGGAAGCTGTA 60.604 57.895 0.00 0.00 0.00 2.74
1569 5265 1.588082 GACGGGGAAGCTGTACGAA 59.412 57.895 7.25 0.00 0.00 3.85
1572 5268 0.458025 CGGGGAAGCTGTACGAAGAC 60.458 60.000 0.00 0.00 0.00 3.01
1573 5269 0.606604 GGGGAAGCTGTACGAAGACA 59.393 55.000 0.00 0.00 0.00 3.41
1574 5270 1.672145 GGGGAAGCTGTACGAAGACAC 60.672 57.143 0.00 0.00 0.00 3.67
1576 5272 1.272769 GGAAGCTGTACGAAGACACCT 59.727 52.381 0.00 0.00 0.00 4.00
1577 5273 2.288886 GGAAGCTGTACGAAGACACCTT 60.289 50.000 0.00 0.00 29.73 3.50
1586 5282 2.930826 GAAGACACCTTCACCTTCCA 57.069 50.000 0.00 0.00 46.18 3.53
1587 5283 3.208747 GAAGACACCTTCACCTTCCAA 57.791 47.619 0.00 0.00 46.18 3.53
1591 5287 1.133792 ACACCTTCACCTTCCAACAGG 60.134 52.381 0.00 0.00 40.23 4.00
1592 5288 0.178990 ACCTTCACCTTCCAACAGGC 60.179 55.000 0.00 0.00 37.47 4.85
1594 5290 1.856265 CTTCACCTTCCAACAGGCGC 61.856 60.000 0.00 0.00 37.47 6.53
1596 5292 4.660938 ACCTTCCAACAGGCGCCC 62.661 66.667 26.15 5.07 37.47 6.13
1597 5293 4.659172 CCTTCCAACAGGCGCCCA 62.659 66.667 26.15 0.00 0.00 5.36
1598 5294 2.597217 CTTCCAACAGGCGCCCAA 60.597 61.111 26.15 5.59 0.00 4.12
2573 6366 1.664659 CTCGTACGTCCAGTCCTAGTG 59.335 57.143 16.05 0.00 0.00 2.74
2574 6367 0.098376 CGTACGTCCAGTCCTAGTGC 59.902 60.000 7.22 0.00 0.00 4.40
2575 6368 0.455005 GTACGTCCAGTCCTAGTGCC 59.545 60.000 0.00 0.00 0.00 5.01
2771 6567 1.896660 GCCGGACAACCTTCAAGCA 60.897 57.895 5.05 0.00 0.00 3.91
3085 6914 1.407258 CTCGCCGAAGAAGAAGGAGAT 59.593 52.381 0.00 0.00 33.59 2.75
3107 6936 0.465097 CCATGCCGAAGCTGATCCTT 60.465 55.000 0.00 0.00 40.80 3.36
3176 7044 2.120718 ACTGAGGAGGACGGGCTT 59.879 61.111 0.00 0.00 0.00 4.35
3189 7057 1.705337 CGGGCTTTGCGTGGTGATAG 61.705 60.000 0.00 0.00 0.00 2.08
3350 7229 5.796437 CGTGTGTATTGTGTATCGTTCTACA 59.204 40.000 0.00 0.00 0.00 2.74
3351 7230 6.021704 CGTGTGTATTGTGTATCGTTCTACAG 60.022 42.308 0.00 0.00 32.45 2.74
3390 7275 4.736793 GGTCACATACGTTTATCGGTACTG 59.263 45.833 0.00 0.00 44.69 2.74
3449 7334 5.699839 CCAGTGCTAAATAAACAAGGTGAC 58.300 41.667 0.00 0.00 0.00 3.67
3463 7353 5.063880 ACAAGGTGACAAACTAAGCTAAGG 58.936 41.667 0.00 0.00 0.00 2.69
3518 7410 7.220741 ACTGTAGACATATCACAAGCGATAT 57.779 36.000 0.00 0.00 38.80 1.63
3600 7492 3.061797 CGTACGATGTGCGATTTTCTCTC 60.062 47.826 10.44 0.00 43.77 3.20
3612 7508 5.107683 GCGATTTTCTCTCGATAATGTGAGG 60.108 44.000 0.00 0.00 38.38 3.86
3670 7566 6.442952 TCATTCGTGGTTCAAAACATAAAGG 58.557 36.000 0.00 0.00 0.00 3.11
3707 7603 4.658071 AGCTTACAAACACACTGAAAACG 58.342 39.130 0.00 0.00 0.00 3.60
3734 7630 2.100216 GCAACCGGCAATGCTACG 59.900 61.111 17.47 0.43 43.97 3.51
3770 7686 6.912591 TCGTAAACTAACGTAATAGCTTAGGC 59.087 38.462 0.00 0.00 43.31 3.93
3798 7714 4.722526 TTTCAGTTGGAGGAAATCAGGA 57.277 40.909 0.00 0.00 0.00 3.86
3802 7718 4.350816 TCAGTTGGAGGAAATCAGGAAAGA 59.649 41.667 0.00 0.00 0.00 2.52
3803 7719 4.699257 CAGTTGGAGGAAATCAGGAAAGAG 59.301 45.833 0.00 0.00 0.00 2.85
3807 7723 1.995542 AGGAAATCAGGAAAGAGGGCA 59.004 47.619 0.00 0.00 0.00 5.36
3808 7724 2.379907 AGGAAATCAGGAAAGAGGGCAA 59.620 45.455 0.00 0.00 0.00 4.52
3809 7725 2.757314 GGAAATCAGGAAAGAGGGCAAG 59.243 50.000 0.00 0.00 0.00 4.01
3810 7726 3.425659 GAAATCAGGAAAGAGGGCAAGT 58.574 45.455 0.00 0.00 0.00 3.16
3811 7727 3.532641 AATCAGGAAAGAGGGCAAGTT 57.467 42.857 0.00 0.00 0.00 2.66
3812 7728 4.657814 AATCAGGAAAGAGGGCAAGTTA 57.342 40.909 0.00 0.00 0.00 2.24
3813 7729 3.418684 TCAGGAAAGAGGGCAAGTTAC 57.581 47.619 0.00 0.00 0.00 2.50
3814 7730 2.076863 CAGGAAAGAGGGCAAGTTACG 58.923 52.381 0.00 0.00 0.00 3.18
3815 7731 1.697982 AGGAAAGAGGGCAAGTTACGT 59.302 47.619 0.00 0.00 0.00 3.57
3816 7732 2.901839 AGGAAAGAGGGCAAGTTACGTA 59.098 45.455 0.00 0.00 0.00 3.57
3817 7733 3.325716 AGGAAAGAGGGCAAGTTACGTAA 59.674 43.478 3.29 3.29 0.00 3.18
3838 7754 7.503549 GTAAGTTAGGCAAGTTACGTAAGAG 57.496 40.000 8.60 2.83 39.53 2.85
3839 7755 5.718724 AGTTAGGCAAGTTACGTAAGAGT 57.281 39.130 8.60 0.00 43.62 3.24
3840 7756 6.824305 AGTTAGGCAAGTTACGTAAGAGTA 57.176 37.500 8.60 0.00 43.62 2.59
3841 7757 6.616017 AGTTAGGCAAGTTACGTAAGAGTAC 58.384 40.000 8.60 0.00 43.62 2.73
3842 7758 6.207417 AGTTAGGCAAGTTACGTAAGAGTACA 59.793 38.462 8.60 0.00 43.62 2.90
3843 7759 5.656213 AGGCAAGTTACGTAAGAGTACAT 57.344 39.130 8.60 0.00 43.62 2.29
3844 7760 6.764308 AGGCAAGTTACGTAAGAGTACATA 57.236 37.500 8.60 0.00 43.62 2.29
3845 7761 6.793349 AGGCAAGTTACGTAAGAGTACATAG 58.207 40.000 8.60 0.00 43.62 2.23
3846 7762 6.376581 AGGCAAGTTACGTAAGAGTACATAGT 59.623 38.462 8.60 0.00 43.62 2.12
3847 7763 7.031975 GGCAAGTTACGTAAGAGTACATAGTT 58.968 38.462 8.60 0.00 43.62 2.24
3848 7764 8.184192 GGCAAGTTACGTAAGAGTACATAGTTA 58.816 37.037 8.60 0.00 43.62 2.24
3849 7765 9.219497 GCAAGTTACGTAAGAGTACATAGTTAG 57.781 37.037 8.60 0.00 43.62 2.34
3850 7766 9.713740 CAAGTTACGTAAGAGTACATAGTTAGG 57.286 37.037 8.60 0.00 43.62 2.69
3851 7767 7.924940 AGTTACGTAAGAGTACATAGTTAGGC 58.075 38.462 8.60 0.00 43.62 3.93
3852 7768 7.554118 AGTTACGTAAGAGTACATAGTTAGGCA 59.446 37.037 8.60 0.00 43.62 4.75
3853 7769 6.764308 ACGTAAGAGTACATAGTTAGGCAA 57.236 37.500 0.00 0.00 43.62 4.52
3854 7770 6.793349 ACGTAAGAGTACATAGTTAGGCAAG 58.207 40.000 0.00 0.00 43.62 4.01
3855 7771 6.376581 ACGTAAGAGTACATAGTTAGGCAAGT 59.623 38.462 0.00 0.00 43.62 3.16
3856 7772 7.094032 ACGTAAGAGTACATAGTTAGGCAAGTT 60.094 37.037 0.00 0.00 43.62 2.66
3857 7773 8.400947 CGTAAGAGTACATAGTTAGGCAAGTTA 58.599 37.037 0.00 0.00 43.02 2.24
3858 7774 9.513727 GTAAGAGTACATAGTTAGGCAAGTTAC 57.486 37.037 0.00 0.00 0.00 2.50
3859 7775 6.793349 AGAGTACATAGTTAGGCAAGTTACG 58.207 40.000 0.00 0.00 0.00 3.18
3860 7776 6.376581 AGAGTACATAGTTAGGCAAGTTACGT 59.623 38.462 0.00 0.00 0.00 3.57
3861 7777 7.554118 AGAGTACATAGTTAGGCAAGTTACGTA 59.446 37.037 0.00 0.00 0.00 3.57
3862 7778 8.055279 AGTACATAGTTAGGCAAGTTACGTAA 57.945 34.615 3.29 3.29 0.00 3.18
3864 7780 7.161773 ACATAGTTAGGCAAGTTACGTAAGA 57.838 36.000 8.60 0.00 43.62 2.10
3865 7781 7.256286 ACATAGTTAGGCAAGTTACGTAAGAG 58.744 38.462 8.60 2.83 43.62 2.85
3866 7782 5.718724 AGTTAGGCAAGTTACGTAAGAGT 57.281 39.130 8.60 0.00 43.62 3.24
3867 7783 6.824305 AGTTAGGCAAGTTACGTAAGAGTA 57.176 37.500 8.60 0.00 43.62 2.59
3868 7784 6.616017 AGTTAGGCAAGTTACGTAAGAGTAC 58.384 40.000 8.60 0.00 43.62 2.73
3873 7789 4.561326 GCAAGTTACGTAAGAGTACCCCAA 60.561 45.833 8.60 0.00 43.62 4.12
3893 7809 0.326927 TTGAAATCGGGGGTGGAGAC 59.673 55.000 0.00 0.00 0.00 3.36
3918 8834 8.255905 ACATTAGTTAGGCAAGTTACGTAAGAT 58.744 33.333 8.60 0.00 43.62 2.40
3922 8838 7.605449 AGTTAGGCAAGTTACGTAAGATTACA 58.395 34.615 8.60 0.00 43.62 2.41
3991 8999 7.201696 GGTTATACGGAATATGTTGCCATATGG 60.202 40.741 18.07 18.07 42.23 2.74
4089 9097 5.064452 CACTGAATTTGAGACACTCCTATGC 59.936 44.000 0.00 0.00 0.00 3.14
4134 9142 1.068748 GTGGCAGCATCAAGTTCACAG 60.069 52.381 0.00 0.00 0.00 3.66
4136 9144 1.527034 GCAGCATCAAGTTCACAGGA 58.473 50.000 0.00 0.00 0.00 3.86
4137 9145 2.089980 GCAGCATCAAGTTCACAGGAT 58.910 47.619 0.00 0.00 0.00 3.24
4138 9146 3.273434 GCAGCATCAAGTTCACAGGATA 58.727 45.455 0.00 0.00 0.00 2.59
4139 9147 3.881688 GCAGCATCAAGTTCACAGGATAT 59.118 43.478 0.00 0.00 0.00 1.63
4140 9148 4.261072 GCAGCATCAAGTTCACAGGATATG 60.261 45.833 0.00 0.00 0.00 1.78
4141 9149 4.880120 CAGCATCAAGTTCACAGGATATGT 59.120 41.667 0.00 0.00 45.43 2.29
4142 9150 6.051074 CAGCATCAAGTTCACAGGATATGTA 58.949 40.000 0.00 0.00 41.41 2.29
4143 9151 6.018425 CAGCATCAAGTTCACAGGATATGTAC 60.018 42.308 0.00 0.00 41.41 2.90
4144 9152 5.237344 GCATCAAGTTCACAGGATATGTACC 59.763 44.000 0.00 0.00 41.41 3.34
4217 9225 2.074576 GGTAGTGCCTCTTTTCCGTTC 58.925 52.381 0.00 0.00 0.00 3.95
4291 9305 1.338484 ACGACAACATCAGCAGCATCT 60.338 47.619 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 1231 1.003355 CGCAATGTGTCCACCCTCT 60.003 57.895 0.00 0.00 0.00 3.69
51 1253 7.796054 TCCCTTTTTGGAAATAATGTTTGTCA 58.204 30.769 0.00 0.00 38.35 3.58
95 1297 5.296780 GTGTGGTTGTATCACCTTGATATGG 59.703 44.000 0.00 0.00 40.97 2.74
121 1323 3.616219 TGCAGAGGTTGTGTTTACACTT 58.384 40.909 13.61 0.00 46.55 3.16
156 1358 2.279935 TTGTGGATGTGTTGGGGTAC 57.720 50.000 0.00 0.00 0.00 3.34
158 1360 2.166907 TTTTGTGGATGTGTTGGGGT 57.833 45.000 0.00 0.00 0.00 4.95
168 1370 4.101430 ACTGGAATGCTTGTTTTTGTGGAT 59.899 37.500 0.00 0.00 0.00 3.41
188 1392 9.117145 GTCATGTACATTTGTAACATTTCACTG 57.883 33.333 5.37 0.00 31.52 3.66
219 1423 4.814234 TCGCGTTCATTAAGGCTTATTGAT 59.186 37.500 24.54 8.08 42.87 2.57
220 1424 4.185394 TCGCGTTCATTAAGGCTTATTGA 58.815 39.130 21.72 21.72 42.87 2.57
244 1448 7.480760 ACTCCCATTTTATGTTGCTAATGTT 57.519 32.000 0.00 0.00 0.00 2.71
338 1542 4.274214 TGATCATCGTGATGGATCTTTTGC 59.726 41.667 9.81 0.00 37.20 3.68
391 1595 0.873054 ACAGTACAGTGAGGTCGACG 59.127 55.000 9.92 0.00 0.00 5.12
393 1597 2.082231 GCTACAGTACAGTGAGGTCGA 58.918 52.381 0.42 0.00 0.00 4.20
435 1639 0.385974 GATTGCACGCAAGCTTTCGT 60.386 50.000 18.46 18.46 39.03 3.85
510 1714 2.444256 GGGCTCTGGTAGGGCGATT 61.444 63.158 0.00 0.00 0.00 3.34
549 1777 2.291741 GCTGAGGCCTAATTCCATTTCG 59.708 50.000 4.42 0.00 0.00 3.46
550 1778 3.998099 GCTGAGGCCTAATTCCATTTC 57.002 47.619 4.42 0.00 0.00 2.17
652 1883 1.453155 GTGGCAAGGGTACTCATGTG 58.547 55.000 0.00 0.00 0.00 3.21
656 1887 0.981183 ATTCGTGGCAAGGGTACTCA 59.019 50.000 0.00 0.00 0.00 3.41
665 1896 1.883275 CACACCCTAAATTCGTGGCAA 59.117 47.619 0.00 0.00 0.00 4.52
690 1921 8.682016 GTGTGTTCTTATTTGAAGAAATTGACG 58.318 33.333 1.47 0.00 37.93 4.35
716 1947 7.116233 GCACTAAACCAACATCCACTATTTTTG 59.884 37.037 0.00 0.00 0.00 2.44
722 1953 3.331150 CGCACTAAACCAACATCCACTA 58.669 45.455 0.00 0.00 0.00 2.74
804 2035 9.558396 TTTTATTTGCCTTTCTGAATCATTGTT 57.442 25.926 0.00 0.00 0.00 2.83
805 2036 9.211485 CTTTTATTTGCCTTTCTGAATCATTGT 57.789 29.630 0.00 0.00 0.00 2.71
806 2037 9.426837 TCTTTTATTTGCCTTTCTGAATCATTG 57.573 29.630 0.00 0.00 0.00 2.82
820 2051 8.443160 GCCACTTTCTATTTTCTTTTATTTGCC 58.557 33.333 0.00 0.00 0.00 4.52
859 2098 9.793259 AAGATCCATCAAAACGTATATAACCAT 57.207 29.630 0.00 0.00 0.00 3.55
900 2139 0.179148 TATAGTGTGACGGCGTGCAG 60.179 55.000 21.19 0.00 0.00 4.41
912 2151 8.478775 TGCTGAGTTGGAGTTATATATAGTGT 57.521 34.615 0.00 0.00 0.00 3.55
914 2153 8.924303 TGTTGCTGAGTTGGAGTTATATATAGT 58.076 33.333 0.00 0.00 0.00 2.12
935 2174 2.501723 TCCTTGAGGACTAGGATGTTGC 59.498 50.000 0.00 0.00 41.56 4.17
954 2193 2.554032 CAGTGGATGACAAGGTTGTTCC 59.446 50.000 6.62 6.62 42.43 3.62
1260 4949 6.927936 GGTACTCGGAGTTAAAGTCTTCTTTT 59.072 38.462 16.95 0.00 42.84 2.27
1495 5191 3.112709 GGAGTTGTCGCCGACTGC 61.113 66.667 19.12 10.80 35.34 4.40
1496 5192 1.734477 CAGGAGTTGTCGCCGACTG 60.734 63.158 19.12 3.06 35.34 3.51
1497 5193 2.651361 CAGGAGTTGTCGCCGACT 59.349 61.111 19.12 0.00 38.06 4.18
1499 5195 2.942796 ATGCAGGAGTTGTCGCCGA 61.943 57.895 0.00 0.00 38.56 5.54
1502 5198 0.721718 GTACATGCAGGAGTTGTCGC 59.278 55.000 4.84 0.00 0.00 5.19
1507 5203 0.973632 TCGGTGTACATGCAGGAGTT 59.026 50.000 4.84 0.00 0.00 3.01
1510 5206 0.530744 GAGTCGGTGTACATGCAGGA 59.469 55.000 4.84 0.00 0.00 3.86
1511 5207 0.460284 GGAGTCGGTGTACATGCAGG 60.460 60.000 0.00 0.00 0.00 4.85
1514 5210 1.533338 CGTAGGAGTCGGTGTACATGC 60.533 57.143 0.00 0.00 0.00 4.06
1546 5242 1.870055 TACAGCTTCCCCGTCGTGAC 61.870 60.000 0.00 0.00 0.00 3.67
1547 5243 1.604308 TACAGCTTCCCCGTCGTGA 60.604 57.895 0.00 0.00 0.00 4.35
1550 5246 2.202570 CGTACAGCTTCCCCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
1556 5252 1.711206 GGTGTCTTCGTACAGCTTCC 58.289 55.000 9.23 0.00 43.02 3.46
1569 5265 1.843851 TGTTGGAAGGTGAAGGTGTCT 59.156 47.619 0.00 0.00 0.00 3.41
1572 5268 1.609208 CCTGTTGGAAGGTGAAGGTG 58.391 55.000 0.00 0.00 34.57 4.00
1573 5269 0.178990 GCCTGTTGGAAGGTGAAGGT 60.179 55.000 0.00 0.00 39.75 3.50
1574 5270 2.646121 GCCTGTTGGAAGGTGAAGG 58.354 57.895 0.00 0.00 39.75 3.46
1579 5275 4.660938 GGGCGCCTGTTGGAAGGT 62.661 66.667 28.56 0.00 39.75 3.50
1580 5276 4.659172 TGGGCGCCTGTTGGAAGG 62.659 66.667 28.56 0.00 40.63 3.46
1582 5278 2.909965 GTTGGGCGCCTGTTGGAA 60.910 61.111 28.56 6.91 34.57 3.53
1607 5303 4.823419 TATTGGGCACGACGGCGG 62.823 66.667 18.49 4.93 43.17 6.13
1609 5305 2.895372 CCTATTGGGCACGACGGC 60.895 66.667 0.00 0.00 40.20 5.68
3085 6914 3.390183 ATCAGCTTCGGCATGGCGA 62.390 57.895 36.95 36.95 44.74 5.54
3176 7044 0.390603 CGGAACCTATCACCACGCAA 60.391 55.000 0.00 0.00 0.00 4.85
3390 7275 1.595794 TGTTCCTTTTCACGCGTTCTC 59.404 47.619 10.22 0.00 0.00 2.87
3495 7386 7.503549 CATATCGCTTGTGATATGTCTACAG 57.496 40.000 24.68 7.89 46.84 2.74
3518 7410 3.998913 TGTACCAGCTGAAATCCATCA 57.001 42.857 17.39 0.04 0.00 3.07
3522 7414 4.702131 AGAAACATGTACCAGCTGAAATCC 59.298 41.667 17.39 0.00 0.00 3.01
3581 7473 1.920574 CGAGAGAAAATCGCACATCGT 59.079 47.619 0.00 0.00 39.67 3.73
3600 7492 3.496130 GCAGACATTCCCTCACATTATCG 59.504 47.826 0.00 0.00 0.00 2.92
3612 7508 2.315925 TCTTCGGATGCAGACATTCC 57.684 50.000 0.00 0.00 36.35 3.01
3670 7566 8.020819 TGTTTGTAAGCTTATTATTGTGTGCTC 58.979 33.333 9.88 0.00 0.00 4.26
3747 7657 6.142958 CCGCCTAAGCTATTACGTTAGTTTAC 59.857 42.308 0.00 0.00 36.60 2.01
3770 7686 0.598065 CCTCCAACTGAAAAAGGCCG 59.402 55.000 0.00 0.00 0.00 6.13
3798 7714 4.347360 ACTTACGTAACTTGCCCTCTTT 57.653 40.909 3.29 0.00 0.00 2.52
3802 7718 3.618263 GCCTAACTTACGTAACTTGCCCT 60.618 47.826 3.29 0.00 0.00 5.19
3803 7719 2.674852 GCCTAACTTACGTAACTTGCCC 59.325 50.000 3.29 0.00 0.00 5.36
3807 7723 6.363357 CGTAACTTGCCTAACTTACGTAACTT 59.637 38.462 3.29 4.74 35.61 2.66
3808 7724 5.858581 CGTAACTTGCCTAACTTACGTAACT 59.141 40.000 3.29 0.00 35.61 2.24
3809 7725 5.629435 ACGTAACTTGCCTAACTTACGTAAC 59.371 40.000 3.29 0.00 43.44 2.50
3810 7726 5.768317 ACGTAACTTGCCTAACTTACGTAA 58.232 37.500 7.94 7.94 43.44 3.18
3811 7727 5.371115 ACGTAACTTGCCTAACTTACGTA 57.629 39.130 11.57 0.00 43.44 3.57
3812 7728 4.243007 ACGTAACTTGCCTAACTTACGT 57.757 40.909 8.27 8.27 42.01 3.57
3813 7729 6.086222 TCTTACGTAACTTGCCTAACTTACG 58.914 40.000 3.29 7.14 40.85 3.18
3814 7730 7.087007 ACTCTTACGTAACTTGCCTAACTTAC 58.913 38.462 3.29 0.00 0.00 2.34
3815 7731 7.219484 ACTCTTACGTAACTTGCCTAACTTA 57.781 36.000 3.29 0.00 0.00 2.24
3816 7732 6.094193 ACTCTTACGTAACTTGCCTAACTT 57.906 37.500 3.29 0.00 0.00 2.66
3817 7733 5.718724 ACTCTTACGTAACTTGCCTAACT 57.281 39.130 3.29 0.00 0.00 2.24
3818 7734 6.381801 TGTACTCTTACGTAACTTGCCTAAC 58.618 40.000 3.29 0.00 0.00 2.34
3819 7735 6.573664 TGTACTCTTACGTAACTTGCCTAA 57.426 37.500 3.29 0.00 0.00 2.69
3820 7736 6.764308 ATGTACTCTTACGTAACTTGCCTA 57.236 37.500 3.29 0.00 0.00 3.93
3821 7737 5.656213 ATGTACTCTTACGTAACTTGCCT 57.344 39.130 3.29 0.00 0.00 4.75
3822 7738 6.558909 ACTATGTACTCTTACGTAACTTGCC 58.441 40.000 3.29 0.00 30.71 4.52
3823 7739 9.219497 CTAACTATGTACTCTTACGTAACTTGC 57.781 37.037 3.29 0.00 30.71 4.01
3824 7740 9.713740 CCTAACTATGTACTCTTACGTAACTTG 57.286 37.037 3.29 0.23 30.71 3.16
3825 7741 8.401709 GCCTAACTATGTACTCTTACGTAACTT 58.598 37.037 3.29 0.00 30.71 2.66
3826 7742 7.554118 TGCCTAACTATGTACTCTTACGTAACT 59.446 37.037 3.29 0.00 30.71 2.24
3827 7743 7.697691 TGCCTAACTATGTACTCTTACGTAAC 58.302 38.462 3.29 0.00 30.71 2.50
3828 7744 7.864108 TGCCTAACTATGTACTCTTACGTAA 57.136 36.000 7.94 7.94 30.71 3.18
3829 7745 7.554118 ACTTGCCTAACTATGTACTCTTACGTA 59.446 37.037 0.00 0.00 0.00 3.57
3830 7746 6.376581 ACTTGCCTAACTATGTACTCTTACGT 59.623 38.462 0.00 0.00 0.00 3.57
3831 7747 6.793349 ACTTGCCTAACTATGTACTCTTACG 58.207 40.000 0.00 0.00 0.00 3.18
3832 7748 9.513727 GTAACTTGCCTAACTATGTACTCTTAC 57.486 37.037 0.00 0.00 0.00 2.34
3833 7749 8.400947 CGTAACTTGCCTAACTATGTACTCTTA 58.599 37.037 0.00 0.00 0.00 2.10
3834 7750 7.094032 ACGTAACTTGCCTAACTATGTACTCTT 60.094 37.037 0.00 0.00 0.00 2.85
3835 7751 6.376581 ACGTAACTTGCCTAACTATGTACTCT 59.623 38.462 0.00 0.00 0.00 3.24
3836 7752 6.558909 ACGTAACTTGCCTAACTATGTACTC 58.441 40.000 0.00 0.00 0.00 2.59
3837 7753 6.521151 ACGTAACTTGCCTAACTATGTACT 57.479 37.500 0.00 0.00 0.00 2.73
3838 7754 8.184192 TCTTACGTAACTTGCCTAACTATGTAC 58.816 37.037 3.29 0.00 0.00 2.90
3839 7755 8.279970 TCTTACGTAACTTGCCTAACTATGTA 57.720 34.615 3.29 0.00 0.00 2.29
3840 7756 7.094032 ACTCTTACGTAACTTGCCTAACTATGT 60.094 37.037 3.29 0.00 0.00 2.29
3841 7757 7.256286 ACTCTTACGTAACTTGCCTAACTATG 58.744 38.462 3.29 0.00 0.00 2.23
3842 7758 7.401955 ACTCTTACGTAACTTGCCTAACTAT 57.598 36.000 3.29 0.00 0.00 2.12
3843 7759 6.824305 ACTCTTACGTAACTTGCCTAACTA 57.176 37.500 3.29 0.00 0.00 2.24
3844 7760 5.718724 ACTCTTACGTAACTTGCCTAACT 57.281 39.130 3.29 0.00 0.00 2.24
3845 7761 5.802451 GGTACTCTTACGTAACTTGCCTAAC 59.198 44.000 3.29 0.00 0.00 2.34
3846 7762 5.105756 GGGTACTCTTACGTAACTTGCCTAA 60.106 44.000 3.29 0.00 0.00 2.69
3847 7763 4.399303 GGGTACTCTTACGTAACTTGCCTA 59.601 45.833 3.29 0.00 0.00 3.93
3848 7764 3.194329 GGGTACTCTTACGTAACTTGCCT 59.806 47.826 3.29 0.00 0.00 4.75
3849 7765 3.515630 GGGTACTCTTACGTAACTTGCC 58.484 50.000 3.29 4.50 0.00 4.52
3850 7766 3.056607 TGGGGTACTCTTACGTAACTTGC 60.057 47.826 3.29 0.00 0.00 4.01
3851 7767 4.789012 TGGGGTACTCTTACGTAACTTG 57.211 45.455 3.29 0.23 0.00 3.16
3852 7768 6.014327 TCAATTGGGGTACTCTTACGTAACTT 60.014 38.462 3.29 0.00 0.00 2.66
3853 7769 5.481473 TCAATTGGGGTACTCTTACGTAACT 59.519 40.000 3.29 0.00 0.00 2.24
3854 7770 5.723295 TCAATTGGGGTACTCTTACGTAAC 58.277 41.667 3.29 0.00 0.00 2.50
3855 7771 5.999205 TCAATTGGGGTACTCTTACGTAA 57.001 39.130 7.94 7.94 0.00 3.18
3856 7772 5.999205 TTCAATTGGGGTACTCTTACGTA 57.001 39.130 5.42 0.00 0.00 3.57
3857 7773 4.895668 TTCAATTGGGGTACTCTTACGT 57.104 40.909 5.42 0.00 0.00 3.57
3858 7774 5.006358 CGATTTCAATTGGGGTACTCTTACG 59.994 44.000 5.42 0.00 0.00 3.18
3859 7775 5.296035 CCGATTTCAATTGGGGTACTCTTAC 59.704 44.000 5.42 0.00 36.47 2.34
3860 7776 5.433526 CCGATTTCAATTGGGGTACTCTTA 58.566 41.667 5.42 0.00 36.47 2.10
3861 7777 4.270008 CCGATTTCAATTGGGGTACTCTT 58.730 43.478 5.42 0.00 36.47 2.85
3862 7778 3.886123 CCGATTTCAATTGGGGTACTCT 58.114 45.455 5.42 0.00 36.47 3.24
3873 7789 1.064685 GTCTCCACCCCCGATTTCAAT 60.065 52.381 0.00 0.00 0.00 2.57
3893 7809 8.644318 ATCTTACGTAACTTGCCTAACTAATG 57.356 34.615 3.29 0.00 0.00 1.90
3922 8838 9.793259 TTCTGGTTTGAGTTGTAGAAAATCTAT 57.207 29.630 0.00 0.00 30.76 1.98
3933 8849 6.833933 AGGTTTTATCTTCTGGTTTGAGTTGT 59.166 34.615 0.00 0.00 0.00 3.32
3935 8851 6.490381 GGAGGTTTTATCTTCTGGTTTGAGTT 59.510 38.462 0.00 0.00 0.00 3.01
3941 8857 4.565028 GGACGGAGGTTTTATCTTCTGGTT 60.565 45.833 0.00 0.00 0.00 3.67
3942 8858 3.055312 GGACGGAGGTTTTATCTTCTGGT 60.055 47.826 0.00 0.00 0.00 4.00
3991 8999 3.438434 GCTCTTTTCACATCTCCTTGTCC 59.562 47.826 0.00 0.00 0.00 4.02
4089 9097 1.062587 CTAATCACCTTTTGCTCGCCG 59.937 52.381 0.00 0.00 0.00 6.46
4134 9142 2.550830 CCAGCTGGTGGTACATATCC 57.449 55.000 25.53 0.00 44.52 2.59
4144 9152 0.106569 TTCCATATGGCCAGCTGGTG 60.107 55.000 32.81 22.04 37.57 4.17
4217 9225 3.781079 TGGTCTGTTTGCAGTCTTTTG 57.219 42.857 0.00 0.00 43.05 2.44
4238 9246 2.390938 GTGTGTCTCGTGTCGATTTCA 58.609 47.619 0.00 0.00 34.61 2.69
4291 9305 0.953471 CCGGTGCTCGTCCATTTCAA 60.953 55.000 0.00 0.00 37.11 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.